Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target CALHM1 255022 broad.mit.edu 36 10 105205218 105205219 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001001412 exon2 c.832_833insC p.T278fs . . . ANK3 288 broad.mit.edu 36 10 61505314 61505315 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 - - - G - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020987 exon37 c.5331_5332insC p.P1777fs . . . CNNM1 26507 broad.mit.edu 36 10 101080084 101080084 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020348 exon1 c.G950A p.S317N . . . MGEA5 10724 broad.mit.edu 36 10 103548834 103548834 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012215 exon9 c.A1564G p.S522G . . . C10orf76 79591 broad.mit.edu 36 10 103756300 103756300 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024541 exon14 c.G1035A p.P345P . . . NOLC1 9221 broad.mit.edu 36 10 103907845 103907845 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004741 exon5 c.C491A p.A164D . . . TAF5 6877 broad.mit.edu 36 10 105128135 105128135 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006951 exon3 c.G951A p.L317L . . . COL17A1 1308 broad.mit.edu 36 10 105788213 105788213 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000494 exon45 c.C3011T p.P1004L . . . ITPRIP 85450 broad.mit.edu 36 10 106065493 106065493 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033397 exon3 c.T307C p.W103R . . . SORCS1 114815 broad.mit.edu 36 10 108379008 108379008 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052918 exon19 c.C2604T p.T868T . . . SORCS1 114815 broad.mit.edu 36 10 108526375 108526375 + Silent SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052918 exon4 c.T792G p.T264T . . . ABLIM1 3983 broad.mit.edu 36 10 116325226 116325226 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002313 exon3 c.G502A p.E168K . . . RAB11FIP2 22841 broad.mit.edu 36 10 119795607 119795607 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014904 exon1 c.C58T p.L20F . . . TIAL1 7073 broad.mit.edu 36 10 121331707 121331707 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033925 exon4 c.G298A p.A100T . . . TACC2 10579 broad.mit.edu 36 10 123838019 123838019 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206862 exon5 c.G5496A p.S1832S . . . C10orf120 399814 broad.mit.edu 36 10 124447443 124447443 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010912 exon3 c.C804T p.P268P . . . MMP21 118856 broad.mit.edu 36 10 127445406 127445406 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147191 exon7 c.G1525A p.A509T . . . C10orf90 118611 broad.mit.edu 36 10 128183460 128183460 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004298 exon3 c.T299C p.F100S . . . DOCK1 1793 broad.mit.edu 36 10 129073065 129073065 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001380 exon38 c.G3766A p.A1256T . . . MKI67 4288 broad.mit.edu 36 10 129787476 129787476 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145966 exon14 c.A8659G p.T2887A . . . MKI67 4288 broad.mit.edu 36 10 129793611 129793611 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145966 exon12 c.G5403A p.R1801R . . . CYP2E1 1571 broad.mit.edu 36 10 135190930 135190930 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000773 exon1 c.C41T p.A14V . . . PTER 9317 broad.mit.edu 36 10 16593055 16593055 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001484 exon6 c.C844T p.R282C . . . C10orf140 387640 broad.mit.edu 36 10 21844688 21844688 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207371 exon4 c.A2070G p.E690E . . . BMI1 648 broad.mit.edu 36 10 22655482 22655482 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005180 exon2 c.A98T p.E33V . . . PIP4K2A 5305 broad.mit.edu 36 10 22868962 22868962 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005028 exon9 c.A1084G p.T362A . . . KIAA1217 56243 broad.mit.edu 36 10 24873368 24873368 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019590 exon19 c.T5163C p.G1721G . . . GPR158 57512 broad.mit.edu 36 10 25928015 25928015 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020752 exon11 c.C3454T p.R1152C . . . PTCHD3 374308 broad.mit.edu 36 10 27742781 27742781 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001034842 exon1 c.C405T p.G135G . . . MAP3K8 1326 broad.mit.edu 36 10 30779288 30779288 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005204 exon5 c.T600C p.G200G . . . PITRM1 10531 broad.mit.edu 36 10 3198511 3198511 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014889 exon4 c.G328A p.V110I . . . ITGB1 3688 broad.mit.edu 36 10 33240583 33240583 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133376 exon13 c.G1730A p.R577H . . . GJD4 219770 broad.mit.edu 36 10 35936570 35936570 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153368 exon2 c.G123A p.G41G . . . ANKRD30A 91074 broad.mit.edu 36 10 37530219 37530219 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052997 exon31 c.A2661G p.T887T . . . DIP2C 22982 broad.mit.edu 36 10 384648 384648 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014974 exon26 c.T3164A p.I1055K . . . DIP2C 22982 broad.mit.edu 36 10 420000 420000 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014974 exon16 c.C1843T p.R615X . . . CXCL12 6387 broad.mit.edu 36 10 44191482 44191482 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033886 exon4 c.C271T p.R91C . . . OR13A1 79290 broad.mit.edu 36 10 45119038 45119038 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004297 exon4 c.C839T p.P280L . . . ZNF488 118738 broad.mit.edu 36 10 47991043 47991043 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153034 exon2 c.C505T p.R169X . . . SLC18A3 6572 broad.mit.edu 36 10 50489403 50489403 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003055 exon1 c.A611G p.Y204C . . . OGDHL 55753 broad.mit.edu 36 10 50621021 50621021 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143996 exon14 c.G1700A p.R567H . . . OGDHL 55753 broad.mit.edu 36 10 50622149 50622149 + Silent SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143996 exon13 c.C1587A p.P529P . . . OGDHL 55753 broad.mit.edu 36 10 50625207 50625207 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143996 exon8 c.C870T p.R290R . . . NCOA4 8031 broad.mit.edu 36 10 51255235 51255235 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145261 exon9 c.C1376A p.P459H . . . PCDH15 65217 broad.mit.edu 36 10 55643760 55643760 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142767 exon9 c.T929G p.L310R . . . GDI2 2665 broad.mit.edu 36 10 5850283 5850283 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001115156 exon7 c.T755C p.V252A . . . ANKRD16 54522 broad.mit.edu 36 10 5969907 5969907 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009943 exon2 c.C444T p.G148G . . . FBXO18 84893 broad.mit.edu 36 10 5988415 5988415 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032807 exon4 c.T720C p.P240P . . . FBXO18 84893 broad.mit.edu 36 10 5988504 5988504 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032807 exon4 c.T809A p.V270D . . . FAM13C 220965 broad.mit.edu 36 10 60782210 60782210 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001971 exon3 c.C150T p.D50D . . . ARID5B 84159 broad.mit.edu 36 10 63521260 63521260 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032199 exon10 c.C2032A p.L678I . . . ARID5B 84159 broad.mit.edu 36 10 63522420 63522420 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032199 exon10 c.C3192T p.G1064G . . . CTNNA3 29119 broad.mit.edu 36 10 68610178 68610178 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013266 exon7 c.C950T p.S317F . . . TET1 80312 broad.mit.edu 36 10 70116192 70116192 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030625 exon11 c.C5126A p.P1709H . . . UNC5B 219699 broad.mit.edu 36 10 72720699 72720699 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170744 exon9 c.C1121T p.A374V . . . CDH23 64072 broad.mit.edu 36 10 73131958 73131958 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022124 exon22 c.C2571T p.V857V . . . DNAJB12 54788 broad.mit.edu 36 10 73766318 73766318 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002762 exon7 c.C1078T p.R360W . . . PPP3CB 5532 broad.mit.edu 36 10 74897345 74897345 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142353 exon9 c.G1080A p.T360T . . . SYNPO2L 79933 broad.mit.edu 36 10 75076857 75076857 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024875 exon2 c.G1887T p.Q629H . . . ITIH5 80760 broad.mit.edu 36 10 7661928 7661928 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030569 exon9 c.C1214T p.T405M . . . ITIH5 80760 broad.mit.edu 36 10 7697956 7697956 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030569 exon7 c.C934T p.R312W . . . ATP5C1 509 broad.mit.edu 36 10 7881019 7881019 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001973 exon4 c.G284T p.G95V . . . DLG5 9231 broad.mit.edu 36 10 79251851 79251851 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004747 exon15 c.C2397T p.S799S . . . DLG5 9231 broad.mit.edu 36 10 79258687 79258687 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004747 exon13 c.G2248A p.A750T . . . POLR3A 11128 broad.mit.edu 36 10 79452074 79452074 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007055 exon6 c.G720A p.M240I . . . FAM190B 54462 broad.mit.edu 36 10 86121190 86121190 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018999 exon2 c.T402C p.S134S . . . LDB3 11155 broad.mit.edu 36 10 88467856 88467856 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171610 exon11 c.C1847T p.A616V . . . MMRN2 79812 broad.mit.edu 36 10 88694091 88694091 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024756 exon5 c.T563C p.V188A . . . LIPJ 142910 broad.mit.edu 36 10 90343844 90343844 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010939 exon5 c.T292C p.Y98H . . . ACTA2 59 broad.mit.edu 36 10 90690975 90690975 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001141945 exon6 c.G607A p.V203I . . . ACTA2 59 broad.mit.edu 36 10 90697079 90697079 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001141945 exon3 c.C174T p.D58D . . . MYOF 26509 broad.mit.edu 36 10 95119479 95119479 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133337 exon24 c.G2463A p.L821L . . . PLCE1 51196 broad.mit.edu 36 10 96008568 96008568 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165979 exon11 c.G2652A p.W884X . . . TLL2 7093 broad.mit.edu 36 10 98119905 98119905 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012465 exon20 c.T2820C p.V940V . . . TLL2 7093 broad.mit.edu 36 10 98134483 98134483 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012465 exon16 c.G2045T p.S682I . . . LCOR 84458 broad.mit.edu 36 10 98705400 98705400 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032440 exon8 c.C1033T p.R345C . . . SLIT1 6585 broad.mit.edu 36 10 98798789 98798789 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003061 exon14 c.G1378A p.E460K . . . PKD2L1 9033 broad.mit.edu 36 10 102047321 102047321 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016112 exon5 c.764delG p.G255fs . . . LZTS2 84445 broad.mit.edu 36 10 102752583 102752583 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032429 exon2 c.298delC p.P100fs . . . SH3PXD2A 9644 broad.mit.edu 36 10 105353381 105353381 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014631 exon14 c.1500delC p.P500fs . . . C10orf88 80007 broad.mit.edu 36 10 124701500 124701500 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024942 exon3 c.401delA p.N134fs . . . CPXM2 119587 broad.mit.edu 36 10 125504224 125504224 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198148 exon13 c.1962delA p.K654fs . . . UROS 7390 broad.mit.edu 36 10 127473511 127473511 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000375 exon9 c.588delT p.F196fs . . . FAM35A 54537 broad.mit.edu 36 10 88902370 88902370 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_019054 exon3 c.1279delA p.K427fs . . . C10orf82 143379 broad.mit.edu 36 10 118415105 118415105 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . KIAA1377 57562 broad.mit.edu 36 11 101338557 101338557 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020802 exon6 c.A1581G p.I527M . . . MMP3 4314 broad.mit.edu 36 11 102219455 102219455 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002422 exon1 c.C33T p.C11C . . . MMP12 4321 broad.mit.edu 36 11 102247846 102247846 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002426 exon3 c.G397A p.A133T . . . DYNC2H1 79659 broad.mit.edu 36 11 102560969 102560969 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001377 exon41 c.A6612G p.S2204S . . . PDGFD 80310 broad.mit.edu 36 11 103319524 103319524 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033135 exon5 c.A620C p.K207T . . . CASP5 838 broad.mit.edu 36 11 104384769 104384769 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136112 exon2 c.G195A p.T65T . . . AMPD3 272 broad.mit.edu 36 11 10471598 10471598 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025389 exon7 c.C1066T p.R356W . . . MUC2 4583 broad.mit.edu 36 11 1083690 1083690 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002457 exon31 c.A5497C p.T1833P . . . ZC3H12C 85463 broad.mit.edu 36 11 109541567 109541567 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033390 exon6 c.C2547T p.F849F . . . ARHGAP20 57569 broad.mit.edu 36 11 110066504 110066504 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020809 exon3 c.C164T p.A55V . . . SIK2 23235 broad.mit.edu 36 11 111096874 111096874 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015191 exon12 c.A1822C p.T608P . . . ALG9 79796 broad.mit.edu 36 11 111185620 111185620 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077691 exon14 c.G1177A p.E393K . . . TTC12 54970 broad.mit.edu 36 11 112699356 112699356 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017868 exon3 c.G195A p.M65I . . . GALNTL4 374378 broad.mit.edu 36 11 11271179 11271179 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198516 exon10 c.G1650A p.R550R . . . TMPRSS5 80975 broad.mit.edu 36 11 113065731 113065731 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030770 exon12 c.C1325T p.A442V . . . CADM1 23705 broad.mit.edu 36 11 114607378 114607378 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014333 exon4 c.C467T p.A156V . . . SIDT2 51092 broad.mit.edu 36 11 116557752 116557752 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040455 exon3 c.T325C p.Y109H . . . TAGLN 6876 broad.mit.edu 36 11 116580146 116580146 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003186 exon5 c.C467T p.A156V . . . RNF214 257160 broad.mit.edu 36 11 116657859 116657859 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077239 exon11 c.C1375A p.L459M . . . DSCAML1 57453 broad.mit.edu 36 11 116813091 116813091 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020693 exon26 c.C4857T p.C1619C . . . TMPRSS13 84000 broad.mit.edu 36 11 117284578 117284578 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077263 exon9 c.A1241G p.D414G . . . UBE4A 9354 broad.mit.edu 36 11 117758531 117758531 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004788 exon13 c.T2048C p.L683P . . . IFT46 56912 broad.mit.edu 36 11 117935754 117935754 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168618 exon3 c.A1G p.M1V . . . PHLDB1 23187 broad.mit.edu 36 11 118018298 118018298 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144758 exon13 c.C2853T p.P951P . . . HMBS 3145 broad.mit.edu 36 11 118468705 118468705 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000190 exon12 c.G799A p.V267M . . . ABCG4 64137 broad.mit.edu 36 11 118534513 118534513 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142505 exon11 c.A1204T p.I402F . . . USP47 55031 broad.mit.edu 36 11 11900943 11900943 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017944 exon10 c.G1111T p.G371C . . . PVRL1 5818 broad.mit.edu 36 11 119040886 119040886 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002855 exon6 c.C1335T p.G445G . . . USP47 55031 broad.mit.edu 36 11 11916393 11916393 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017944 exon17 c.A1887C p.K629N . . . TECTA 7007 broad.mit.edu 36 11 120528958 120528958 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005422 exon12 c.C4264T p.P1422S . . . SORL1 6653 broad.mit.edu 36 11 120934729 120934729 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003105 exon20 c.G2883A p.P961P . . . OR10S1 219873 broad.mit.edu 36 11 123352783 123352783 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004474 exon1 c.C826T p.P276S . . . OR10G4 390264 broad.mit.edu 36 11 123392068 123392068 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004462 exon1 c.G577A p.A193T . . . OR8B12 219858 broad.mit.edu 36 11 123918694 123918694 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005195 exon1 c.C67T p.R23W . . . ESAM 90952 broad.mit.edu 36 11 124129808 124129808 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138961 exon5 c.C669T p.V223V . . . ROBO3 64221 broad.mit.edu 36 11 124254338 124254338 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022370 exon24 c.G3576C p.Q1192H . . . ROBO4 54538 broad.mit.edu 36 11 124261867 124261867 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019055 exon16 c.G2497A p.V833I . . . CHEK1 1111 broad.mit.edu 36 11 125030402 125030402 + Nonsense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001274 exon13 c.A1408T p.K470X . . . KIRREL3 84623 broad.mit.edu 36 11 125820171 125820171 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032531 exon10 c.C1165T p.R389C . . . APLP2 334 broad.mit.edu 36 11 129501912 129501912 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001642 exon8 c.C1198T p.R400W . . . ZBTB44 29068 broad.mit.edu 36 11 129636867 129636867 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014155 exon2 c.C112T p.Q38X . . . ADAMTS8 11095 broad.mit.edu 36 11 129794315 129794315 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007037 exon2 c.T803A p.V268E . . . IGSF9B 22997 broad.mit.edu 36 11 133295758 133295758 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014987 exon18 c.G3072A p.T1024T . . . IGSF9B 22997 broad.mit.edu 36 11 133304779 133304779 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014987 exon12 c.T1628C p.V543A . . . GLB1L2 89944 broad.mit.edu 36 11 133734177 133734177 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138342 exon7 c.G665A p.R222H . . . BTBD10 84280 broad.mit.edu 36 11 13399856 13399856 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032320 exon3 c.C207T p.D69D . . . INSC 387755 broad.mit.edu 36 11 15168923 15168923 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042536 exon6 c.G680A p.R227H . . . ABCC8 6833 broad.mit.edu 36 11 17375108 17375108 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000352 exon33 c.C4050T p.S1350S . . . SPTY2D1 144108 broad.mit.edu 36 11 18588015 18588015 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194285 exon6 c.G2027A p.R676H . . . NAV2 89797 broad.mit.edu 36 11 20022373 20022373 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001111018 exon13 c.G2986A p.A996T . . . NAV2 89797 broad.mit.edu 36 11 20092794 20092794 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001111018 exon37 c.G6849A p.Q2283Q . . . SLC5A12 159963 broad.mit.edu 36 11 26681969 26681969 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178498 exon5 c.A627G p.G209G . . . CCDC34 91057 broad.mit.edu 36 11 27341008 27341008 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030771 exon1 c.G310A p.E104K . . . WT1 7490 broad.mit.edu 36 11 32370150 32370150 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198551 exon9 c.A740C p.K247T . . . ART1 417 broad.mit.edu 36 11 3637455 3637455 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004314 exon3 c.G130A p.A44T . . . RAG1 5896 broad.mit.edu 36 11 36552999 36552999 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000448 exon2 c.G1569A p.Q523Q . . . LRP4 4038 broad.mit.edu 36 11 46853706 46853706 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002334 exon27 c.A3802G p.T1268A . . . OR52A5 390054 broad.mit.edu 36 11 5110382 5110382 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005160 exon1 c.G67C p.E23Q . . . OR51V1 283111 broad.mit.edu 36 11 5178373 5178373 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004760 exon1 c.C134T p.A45V . . . HBE1 3046 broad.mit.edu 36 11 5247365 5247365 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005330 exon2 c.T210C p.T70T . . . HBE1 3046 broad.mit.edu 36 11 5247460 5247460 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005330 exon2 c.A115C p.T39P . . . OR51B6 390058 broad.mit.edu 36 11 5330003 5330003 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004750 exon1 c.A690G p.G230G . . . UBQLNL 143630 broad.mit.edu 36 11 5493645 5493645 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145053 exon1 c.G603A p.T201T . . . OR4P4 81300 broad.mit.edu 36 11 55162527 55162527 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004124 exon1 c.A118G p.N40D . . . OR4P4 81300 broad.mit.edu 36 11 55162859 55162859 + Silent SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004124 exon1 c.A450T p.G150G . . . SPRYD5 84767 broad.mit.edu 36 11 55412266 55412266 + Nonsense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032681 exon4 c.T690G p.Y230X . . . OR5W2 390148 broad.mit.edu 36 11 55438283 55438283 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001960 exon1 c.A352T p.M118L . . . OR5T2 219464 broad.mit.edu 36 11 55757062 55757062 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004746 exon1 c.A176C p.N59T . . . OR8H1 219469 broad.mit.edu 36 11 55814379 55814379 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005199 exon1 c.G736T p.G246X . . . TRIM6 117854 broad.mit.edu 36 11 5589131 5589131 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003818 exon8 c.C1534T p.R512C . . . OR5R1 219479 broad.mit.edu 36 11 55941925 55941925 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004744 exon1 c.C360T p.Y120Y . . . OR5M9 390162 broad.mit.edu 36 11 55987181 55987181 + Silent SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004743 exon1 c.C273A p.S91S . . . OR5M3 219482 broad.mit.edu 36 11 55993844 55993844 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004742 exon1 c.T706A p.F236I . . . OR5AK2 390181 broad.mit.edu 36 11 56513406 56513406 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005323 exon1 c.T442A p.S148T . . . APLNR 187 broad.mit.edu 36 11 56760870 56760870 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005161 exon1 c.G185A p.R62H . . . TRIM22 10346 broad.mit.edu 36 11 5684406 5684406 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199573 exon5 c.A745T p.I249F . . . SLC43A1 8501 broad.mit.edu 36 11 57020104 57020104 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003627 exon7 c.C668A p.P223H . . . CLP1 10978 broad.mit.edu 36 11 57185270 57185270 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142597 exon3 c.T872C p.V291A . . . ZDHHC5 25921 broad.mit.edu 36 11 57220058 57220058 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015457 exon9 c.T976G p.L326V . . . OR9Q2 219957 broad.mit.edu 36 11 57715343 57715343 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005283 exon1 c.G805A p.E269K . . . MPEG1 219972 broad.mit.edu 36 11 58736876 58736876 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039396 exon1 c.G39A p.A13A . . . OR56A3 390083 broad.mit.edu 36 11 5925703 5925703 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003443 exon1 c.C551T p.A184V . . . CYBASC3 220002 broad.mit.edu 36 11 60878012 60878012 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161454 exon5 c.G264A p.S88S . . . AHNAK 79026 broad.mit.edu 36 11 62055521 62055521 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001620 exon5 c.G2944A p.V982I . . . INTS5 80789 broad.mit.edu 36 11 62172338 62172338 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_030628 exon2 c.C1790T p.A597V . . . CHRM1 1128 broad.mit.edu 36 11 62434190 62434190 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000738 exon2 c.G959A p.R320Q . . . FLRT1 23769 broad.mit.edu 36 11 63641333 63641333 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013280 exon2 c.C1018T p.R340W . . . SMPD1 6609 broad.mit.edu 36 11 6369718 6369718 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007593 exon2 c.G844A p.A282T . . . APBB1 322 broad.mit.edu 36 11 6388704 6388704 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164 exon2 c.G450T p.E150D . . . HPX 3263 broad.mit.edu 36 11 6409545 6409545 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000613 exon9 c.G1031A p.R344Q . . . ARFIP2 23647 broad.mit.edu 36 11 6455879 6455879 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012402 exon6 c.G663A p.T221T . . . NAALADL1 10004 broad.mit.edu 36 11 64582026 64582026 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005468 exon3 c.T377G p.I126S . . . SYVN1 84447 broad.mit.edu 36 11 64652521 64652521 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032431 exon16 c.G1760A p.G587D . . . TIGD3 220359 broad.mit.edu 36 11 64880842 64880842 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145719 exon2 c.C987T p.A329A . . . SCYL1 57410 broad.mit.edu 36 11 65054811 65054811 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001048218 exon7 c.G985A p.V329I . . . KAT5 10524 broad.mit.edu 36 11 65237049 65237049 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182710 exon3 c.A328G p.T110A . . . SNX32 254122 broad.mit.edu 36 11 65374044 65374044 + Silent SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152760 exon3 c.C219A p.A73A . . . PACS1 55690 broad.mit.edu 36 11 65734435 65734435 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018026 exon3 c.C471T p.N157N . . . RRP8 23378 broad.mit.edu 36 11 6579896 6579896 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015324 exon2 c.C225T p.C75C . . . DPP3 10072 broad.mit.edu 36 11 66017171 66017171 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005700 exon11 c.C1241T p.A414V . . . ACTN3 89 broad.mit.edu 36 11 66084724 66084724 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001104 exon15 c.G1782A p.Q594Q . . . ANKRD13D 338692 broad.mit.edu 36 11 66824148 66824148 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207354 exon10 c.G1051A p.E351K . . . OR2D3 120775 broad.mit.edu 36 11 6899415 6899415 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004684 exon1 c.C607T p.L203L . . . NUMA1 4926 broad.mit.edu 36 11 71397698 71397698 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006185 exon19 c.G5021A p.R1674H . . . PDE2A 5138 broad.mit.edu 36 11 71973364 71973364 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002599 exon18 c.G1416A p.T472T . . . ARAP1 116985 broad.mit.edu 36 11 72074864 72074864 + Silent SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040118 exon34 c.C4206A p.P1402P . . . SLCO2B1 11309 broad.mit.edu 36 11 74554551 74554551 + Silent SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007256 exon4 c.C357A p.G119G . . . OLFML1 283298 broad.mit.edu 36 11 7487355 7487355 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198474 exon3 c.C569T p.A190V . . . CAPN5 726 broad.mit.edu 36 11 76504223 76504223 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004055 exon6 c.C834T p.D278D . . . MYO7A 4647 broad.mit.edu 36 11 76549755 76549755 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127179 exon12 c.G1289A p.R430H . . . MYO7A 4647 broad.mit.edu 36 11 76580945 76580945 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000260 exon31 c.A4126G p.K1376E . . . AQP11 282679 broad.mit.edu 36 11 76978914 76978914 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173039 exon1 c.T229C p.W77R . . . ODZ4 26011 broad.mit.edu 36 11 78097207 78097207 + Silent SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098816 exon27 c.C4056A p.G1352G . . . EIF3F 8665 broad.mit.edu 36 11 7969913 7969913 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003754 exon2 c.A374T p.D125V . . . C11orf82 220042 broad.mit.edu 36 11 82303491 82303491 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145018 exon3 c.A63G p.I21M . . . FZD4 8322 broad.mit.edu 36 11 86340775 86340775 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012193 exon2 c.C671A p.A224D . . . ST5 6764 broad.mit.edu 36 11 8680805 8680805 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005418 exon17 c.G2610T p.E870D . . . GRM5 2915 broad.mit.edu 36 11 88026063 88026063 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000842 exon4 c.A1068T p.Q356H . . . GRM5 2915 broad.mit.edu 36 11 88420290 88420290 + Silent SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000842 exon2 c.C399A p.S133S . . . TYR 7299 broad.mit.edu 36 11 88600705 88600705 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000372 exon3 c.T1103A p.I368N . . . NOX4 50507 broad.mit.edu 36 11 88773154 88773154 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016931 exon10 c.C888T p.A296A . . . MTMR2 8898 broad.mit.edu 36 11 95222513 95222513 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201278 exon11 c.G750A p.R250R . . . BCL9L 283149 broad.mit.edu 36 11 118278308 118278308 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182557 exon6 c.1354delC p.Q452fs . . . KCNA4 3739 broad.mit.edu 36 11 29990139 29990139 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002233 exon2 c.663delT p.F221fs . . . OR56A4 120793 broad.mit.edu 36 11 5980467 5980467 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001005179 exon1 c.488delT p.L163X . . . AHNAK 79026 broad.mit.edu 36 11 62051535 62051535 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001620 exon5 c.6930delC p.P2310fs . . . MYBPC1 4604 broad.mit.edu 36 12 100535118 100535118 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002465 exon3 c.T69C p.S23S . . . C12orf42 374470 broad.mit.edu 36 12 102220297 102220297 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099336 exon6 c.G802A p.A268T . . . KIAA1033 23325 broad.mit.edu 36 12 104058844 104058844 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015275 exon17 c.G1598A p.R533H . . . KLRC3 3823 broad.mit.edu 36 12 10479211 10479211 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002260 exon2 c.G253A p.A85T . . . NUAK1 9891 broad.mit.edu 36 12 104990670 104990670 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014840 exon5 c.C661T p.P221S . . . RFX4 5992 broad.mit.edu 36 12 105572214 105572214 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213594 exon4 c.C270T p.C90C . . . BTBD11 121551 broad.mit.edu 36 12 106535331 106535331 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017523 exon7 c.C830T p.A277V . . . PRDM4 11108 broad.mit.edu 36 12 106662538 106662538 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012406 exon7 c.G1307T p.R436L . . . SSH1 54434 broad.mit.edu 36 12 107706039 107706039 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018984 exon15 c.G3004A p.A1002T . . . MYO1H 283446 broad.mit.edu 36 12 108365727 108365727 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101421 exon27 c.A2666G p.D889G . . . ANKRD13A 88455 broad.mit.edu 36 12 108941411 108941411 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033121 exon6 c.G629A p.R210H . . . ATXN2 6311 broad.mit.edu 36 12 110438422 110438422 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002973 exon10 c.C1774T p.P592S . . . TAS2R46 259292 broad.mit.edu 36 12 11105527 11105527 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176887 exon1 c.C634A p.H212N . . . TRAFD1 10906 broad.mit.edu 36 12 111064437 111064437 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006700 exon6 c.G805A p.A269T . . . TAS2R30 259293 broad.mit.edu 36 12 11177287 11177287 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001097643 exon1 c.A824G p.H275R . . . RASAL1 8437 broad.mit.edu 36 12 112027911 112027911 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004658 exon17 c.T1818C p.P606P . . . DDX54 79039 broad.mit.edu 36 12 112101390 112101390 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024072 exon4 c.G505A p.A169T . . . TBX5 6910 broad.mit.edu 36 12 113325975 113325975 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000192 exon2 c.T112C p.S38P . . . ERC1 23085 broad.mit.edu 36 12 1169334 1169334 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178039 exon11 c.C2122T p.R708X . . . TAOK3 51347 broad.mit.edu 36 12 117084170 117084170 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016281 exon18 c.C1945T p.L649L . . . CCDC64 92558 broad.mit.edu 36 12 118920867 118920867 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207311 exon2 c.C589T p.R197W . . . HNF1A 6927 broad.mit.edu 36 12 119921563 119921563 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000545 exon8 c.G1611A p.T537T . . . KDM2B 84678 broad.mit.edu 36 12 120432032 120432032 + Silent SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032590 exon11 c.C1368A p.A456A . . . CCDC62 84660 broad.mit.edu 36 12 121852165 121852165 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201435 exon9 c.G1519A p.E507K . . . PITPNM2 57605 broad.mit.edu 36 12 122064462 122064462 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020845 exon3 c.C159T p.G53G . . . TCTN2 79867 broad.mit.edu 36 12 122722056 122722056 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024809 exon2 c.C132T p.S44S . . . TMEM132B 114795 broad.mit.edu 36 12 124701417 124701417 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052907 exon7 c.C1864G p.L622V . . . TMEM132D 121256 broad.mit.edu 36 12 128260068 128260068 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133448 exon5 c.G1393A p.E465K . . . RIMBP2 23504 broad.mit.edu 36 12 129492975 129492975 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015347 exon8 c.C824T p.A275V . . . GPR133 283383 broad.mit.edu 36 12 130005131 130005131 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198827 exon2 c.G76A p.V26I . . . EP400 57634 broad.mit.edu 36 12 131120058 131120058 + Silent SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015409 exon51 c.C8937A p.A2979A . . . CHFR 55743 broad.mit.edu 36 12 131933702 131933702 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018223 exon15 c.G1648T p.D550Y . . . MGST1 4257 broad.mit.edu 36 12 16408082 16408082 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145764 exon4 c.C308T p.A103V . . . RERGL 79785 broad.mit.edu 36 12 18128736 18128736 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024730 exon5 c.A317G p.Q106R . . . AEBP2 121536 broad.mit.edu 36 12 19517493 19517493 + Silent SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153207 exon3 c.A924T p.P308P . . . CMAS 55907 broad.mit.edu 36 12 22099442 22099442 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018686 exon2 c.A353T p.D118V . . . SOX5 6660 broad.mit.edu 36 12 23890237 23890237 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152989 exon6 c.T389C p.V130A . . . KRAS 3845 broad.mit.edu 36 12 25289551 25289551 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004985 exon2 c.G35A p.G12D KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 . . ITPR2 3709 broad.mit.edu 36 12 26622935 26622935 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002223 exon34 c.T4608C p.C1536C . . . FOXM1 2305 broad.mit.edu 36 12 2838640 2838640 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_202003 exon8 c.G1672A p.A558T . . . KDM5A 5927 broad.mit.edu 36 12 287045 287045 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042603 exon23 c.T3766C p.W1256R . . . TMTC1 83857 broad.mit.edu 36 12 29601114 29601114 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193451 exon10 c.C1619T p.A540V . . . DDX11 1663 broad.mit.edu 36 12 31145234 31145234 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004399 exon20 c.T1955C p.V652A . . . C12orf35 55196 broad.mit.edu 36 12 32026198 32026198 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018169 exon4 c.C1042T p.Q348X . . . ABCD2 225 broad.mit.edu 36 12 38299012 38299012 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005164 exon1 c.T673C p.Y225H . . . LRRK2 120892 broad.mit.edu 36 12 39002237 39002237 + Silent SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198578 exon36 c.T5304G p.P1768P . . . CNTN1 1272 broad.mit.edu 36 12 39609879 39609879 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175038 exon6 c.C478T p.R160C . . . CCDC77 84318 broad.mit.edu 36 12 411321 411321 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130148 exon6 c.G516A p.S172S . . . NELL2 4753 broad.mit.edu 36 12 43459763 43459763 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145108 exon5 c.G556T p.G186C . . . ARID2 196528 broad.mit.edu 36 12 44497822 44497822 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152641 exon5 c.A521G p.D174G . . . ARID2 196528 broad.mit.edu 36 12 44532125 44532125 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152641 exon15 c.C3952T p.Q1318X . . . DYRK4 8798 broad.mit.edu 36 12 4570715 4570715 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003845 exon3 c.G108A p.L36L . . . TMEM106C 79022 broad.mit.edu 36 12 46645382 46645382 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024056 exon3 c.C238T p.R80C . . . ANP32D 23519 broad.mit.edu 36 12 47153091 47153091 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012404 exon1 c.C377T p.T126I . . . DDX23 9416 broad.mit.edu 36 12 47511340 47511340 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004818 exon16 c.A2091G p.G697G . . . MLL2 8085 broad.mit.edu 36 12 47722238 47722238 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003482 exon28 c.C6010T p.Q2004X . . . PRPH 5630 broad.mit.edu 36 12 47976945 47976945 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006262 exon4 c.C709T p.R237X . . . TROAP 10024 broad.mit.edu 36 12 48010541 48010541 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005480 exon13 c.C1646A p.P549H . . . SCN8A 6334 broad.mit.edu 36 12 50466700 50466700 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014191 exon22 c.G4050A p.A1350A . . . KRT1 3848 broad.mit.edu 36 12 51360301 51360301 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006121 exon1 c.C99T p.S33S . . . MFSD5 84975 broad.mit.edu 36 12 51933404 51933404 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032889 exon2 c.G518A p.R173Q . . . ESPL1 9700 broad.mit.edu 36 12 51956756 51956756 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012291 exon8 c.C1786T p.R596W . . . PFDN5 5204 broad.mit.edu 36 12 51977943 51977943 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145897 exon2 c.A115G p.I39V . . . LACRT 90070 broad.mit.edu 36 12 53312367 53312367 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033277 exon3 c.G178A p.A60T . . . KIAA0748 9840 broad.mit.edu 36 12 53646139 53646139 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098815 exon7 c.C411T p.S137S . . . NEUROD4 58158 broad.mit.edu 36 12 53706986 53706986 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021191 exon2 c.A496G p.T166A . . . RPS26 6231 broad.mit.edu 36 12 54723445 54723445 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029 exon3 c.A213G p.L71L . . . ERBB3 2065 broad.mit.edu 36 12 54780018 54780018 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001982 exon25 c.G3067A p.A1023T . . . NACA 4666 broad.mit.edu 36 12 55399623 55399623 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001113203 exon3 c.C1958T p.A653V . . . RDH16 8608 broad.mit.edu 36 12 55632195 55632195 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003708 exon4 c.G839A p.R280H . . . ZBTB39 9880 broad.mit.edu 36 12 55684062 55684062 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014830 exon2 c.G907A p.D303N . . . DCTN2 10540 broad.mit.edu 36 12 56214038 56214038 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006400 exon7 c.C635T p.S212L . . . ARHGEF25 115557 broad.mit.edu 36 12 56293790 56293790 + Missense_Mutation SNP G A A rs61935728 unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111270 exon6 c.G649A p.D217N . . . B4GALNT1 2583 broad.mit.edu 36 12 56311105 56311105 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001478 exon4 c.G415T p.A139S . . . AVIL 10677 broad.mit.edu 36 12 56483646 56483646 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006576 exon14 c.T1745C p.V582A . . . VWF 7450 broad.mit.edu 36 12 6054967 6054967 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000552 exon7 c.G669T p.E223D . . . AVPR1A 552 broad.mit.edu 36 12 61830748 61830748 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000706 exon1 c.C136T p.R46C . . . XPOT 11260 broad.mit.edu 36 12 63100511 63100511 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007235 exon8 c.A786G p.K262K . . . TBK1 29110 broad.mit.edu 36 12 63164523 63164523 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013254 exon9 c.C1166T p.T389I . . . SCNN1A 6337 broad.mit.edu 36 12 6333895 6333895 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159576 exon7 c.T1507C p.Y503H . . . LEMD3 23592 broad.mit.edu 36 12 63850895 63850895 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014319 exon1 c.G1252A p.A418T . . . CHD4 1108 broad.mit.edu 36 12 6570893 6570893 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001273 exon22 c.G3340A p.A1114T . . . CHD4 1108 broad.mit.edu 36 12 6573014 6573014 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001273 exon16 c.C2343T p.S781S . . . PTMS 5763 broad.mit.edu 36 12 6749603 6749603 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002824 exon4 c.G216T p.E72D . . . CPM 1368 broad.mit.edu 36 12 67547062 67547062 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198320 exon7 c.A821G p.Q274R . . . CPSF6 11052 broad.mit.edu 36 12 67931212 67931212 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007007 exon2 c.T97C p.Y33H . . . C1R 715 broad.mit.edu 36 12 7058814 7058814 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001733 exon8 c.C1089T p.I363I . . . TBC1D15 64786 broad.mit.edu 36 12 70603062 70603062 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146214 exon18 c.G1860A p.G620G . . . CLSTN3 9746 broad.mit.edu 36 12 7177484 7177484 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014718 exon3 c.C236T p.A79V . . . CD163L1 283316 broad.mit.edu 36 12 7440069 7440069 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174941 exon8 c.C1939T p.L647F . . . BBS10 79738 broad.mit.edu 36 12 75264666 75264666 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024685 exon2 c.T1230C p.H410H . . . E2F7 144455 broad.mit.edu 36 12 75943791 75943791 + Nonsense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203394 exon12 c.T2243A p.L748X . . . NAV3 89795 broad.mit.edu 36 12 77117302 77117302 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014903 exon36 c.T6509G p.L2170R . . . CCDC59 29080 broad.mit.edu 36 12 81275038 81275038 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014167 exon2 c.C296A p.A99D . . . LRRIQ1 84125 broad.mit.edu 36 12 84042092 84042092 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032165 exon17 c.A3671C p.K1224T . . . CEP290 80184 broad.mit.edu 36 12 87004355 87004355 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025114 exon33 c.C4246T p.R1416C . . . TMTC3 160418 broad.mit.edu 36 12 87090604 87090604 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181783 exon8 c.G1150T p.G384W . . . ATP2B1 490 broad.mit.edu 36 12 88573789 88573789 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001323 exon1 c.C6T p.G2G . . . PHC1 1911 broad.mit.edu 36 12 8965488 8965488 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004426 exon5 c.G331A p.A111T . . . KERA 11081 broad.mit.edu 36 12 89973574 89973574 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007035 exon2 c.A616G p.N206D . . . PZP 5858 broad.mit.edu 36 12 9201070 9201070 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002864 exon28 c.T3518C p.L1173P . . . FGD6 55785 broad.mit.edu 36 12 94127225 94127225 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018351 exon2 c.G1966T p.D656Y . . . IKBIP 121457 broad.mit.edu 36 12 97544330 97544330 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153687 exon3 c.A643T p.T215S . . . APAF1 317 broad.mit.edu 36 12 97589490 97589490 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013229 exon12 c.G1622A p.G541E . . . CLECL1 160365 broad.mit.edu 36 12 9776890 9776890 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172004 exon1 c.G238A p.A80T . . . UHRF1BP1L 23074 broad.mit.edu 36 12 98966024 98966024 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015054 exon18 c.T3800C p.I1267T . . . ACTR6 64431 broad.mit.edu 36 12 99122942 99122942 + Silent SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022496 exon2 c.C162A p.L54L . . . NAA25 80018 broad.mit.edu 36 12 110951765 110951765 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024953 exon24 c.2872delG p.E958fs . . . ZNF84 7637 broad.mit.edu 36 12 132145579 132145579 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127372 exon5 c.2205delA p.V735fs . . . RECQL 5965 broad.mit.edu 36 12 21535814 21535814 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032941 exon4 c.120delA p.K40fs . . . ACVR1B 91 broad.mit.edu 36 12 50665388 50665388 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020327 exon6 c.969delG p.V323fs . . . CYP27B1 1594 broad.mit.edu 36 12 56443753 56443753 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000785 exon8 c.1321delC p.H441fs . . . ZFC3H1 196441 broad.mit.edu 36 12 70325048 70325048 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144982 exon4 c.1155delA p.K385fs . . . E2F7 144455 broad.mit.edu 36 12 75973958 75973958 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203394 exon3 c.177delA p.K59fs . . . EEA1 8411 broad.mit.edu 36 12 91769045 91769045 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003566 exon9 c.771delA p.K257fs . . . PLXNC1 10154 broad.mit.edu 36 12 93216656 93216656 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005761 exon27 c.4192delA p.K1398fs . . . PLEKHA9 51054 broad.mit.edu 36 12 43854119 43854119 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . NALCN 259232 broad.mit.edu 36 13 100534068 100534068 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052867 exon31 c.G3578A p.R1193H . . . NALCN 259232 broad.mit.edu 36 13 100595151 100595151 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052867 exon16 c.T1937C p.I646T . . . FGF14 2259 broad.mit.edu 36 13 101173234 101173234 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175929 exon5 c.C707T p.A236V . . . MYO16 23026 broad.mit.edu 36 13 108116425 108116425 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198950 exon2 c.G219A p.A73A . . . MYO16 23026 broad.mit.edu 36 13 108551184 108551184 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198950 exon28 c.C3386T p.A1129V . . . TUBGCP3 10426 broad.mit.edu 36 13 112222254 112222254 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006322 exon15 c.G1828A p.A610T . . . TUBGCP3 10426 broad.mit.edu 36 13 112224724 112224724 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006322 exon14 c.G1656C p.K552N . . . TFDP1 7027 broad.mit.edu 36 13 113336917 113336917 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007111 exon8 c.A686G p.Q229R . . . TUBA3C 7278 broad.mit.edu 36 13 18649492 18649492 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006001 exon4 c.G631T p.D211Y . . . IFT88 8100 broad.mit.edu 36 13 20103194 20103194 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175605 exon18 c.A1366G p.R456G . . . SACS 26278 broad.mit.edu 36 13 22813617 22813617 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014363 exon10 c.A2398T p.M800L . . . PARP4 143 broad.mit.edu 36 13 23958375 23958375 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006437 exon11 c.G1283T p.S428I . . . CENPJ 55835 broad.mit.edu 36 13 24379072 24379072 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018451 exon7 c.A1104G p.K368K . . . CENPJ 55835 broad.mit.edu 36 13 24379280 24379280 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018451 exon6 c.A1026T p.L342F . . . PABPC3 5042 broad.mit.edu 36 13 24568521 24568521 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030979 exon1 c.C185G p.T62R . . . MTMR6 9107 broad.mit.edu 36 13 24733855 24733855 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004685 exon6 c.A677T p.K226I . . . PRHOXNB 646625 broad.mit.edu 36 13 27460713 27460713 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105577 exon1 c.C62T p.A21V . . . FLT1 2321 broad.mit.edu 36 13 27877994 27877994 + Missense_Mutation SNP G C C rs55675306 unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002019 exon11 c.C1474G p.L492V . . . BRCA2 675 broad.mit.edu 36 13 31808987 31808987 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000059 exon11 c.A2495G p.E832G . . . PDS5B 23047 broad.mit.edu 36 13 32179086 32179086 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015032 exon18 c.A1872G p.Q624Q . . . TRPC4 7223 broad.mit.edu 36 13 37109653 37109653 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135956 exon10 c.C2126T p.S709L . . . ELF1 1997 broad.mit.edu 36 13 40413153 40413153 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172373 exon8 c.A1160G p.H387R . . . NAA16 79612 broad.mit.edu 36 13 40841362 40841362 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024561 exon15 c.A1890T p.E630D . . . RB1 5925 broad.mit.edu 36 13 47931854 47931854 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000321 exon20 c.A1990G p.T664A . . . INTS6 26512 broad.mit.edu 36 13 50848277 50848277 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012141 exon13 c.A1637G p.D546G . . . ATP7B 540 broad.mit.edu 36 13 51440683 51440683 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000053 exon4 c.G1605T p.E535D . . . PCDH17 27253 broad.mit.edu 36 13 57104916 57104916 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040429 exon1 c.G235A p.A79T . . . PCDH17 27253 broad.mit.edu 36 13 57106695 57106695 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040429 exon1 c.A2014G p.T672A . . . PCDH17 27253 broad.mit.edu 36 13 57197137 57197137 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040429 exon4 c.C3188A p.A1063D . . . PCDH9 5101 broad.mit.edu 36 13 66699991 66699991 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020403 exon2 c.A583C p.T195P . . . C13orf34 79866 broad.mit.edu 36 13 72219162 72219162 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024808 exon10 c.G1394A p.G465D . . . LMO7 4008 broad.mit.edu 36 13 75325280 75325280 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015842 exon25 c.G3717A p.Q1239Q . . . MYCBP2 23077 broad.mit.edu 36 13 76524054 76524054 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015057 exon81 c.G13648A p.A4550T . . . SLITRK1 114798 broad.mit.edu 36 13 83351882 83351882 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052910 exon1 c.A1762G p.T588A . . . DCT 1638 broad.mit.edu 36 13 93929318 93929318 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001922 exon1 c.C193G p.R65G . . . CLDN10 9071 broad.mit.edu 36 13 94884219 94884219 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160100 exon1 c.A131G p.Y44C . . . IPO5 3843 broad.mit.edu 36 13 97453239 97453239 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002271 exon16 c.T1498C p.L500L . . . CLYBL 171425 broad.mit.edu 36 13 99321208 99321208 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206808 exon7 c.A818G p.H273R . . . PCCA 5095 broad.mit.edu 36 13 99875941 99875941 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178004 exon20 c.G1800A p.S600S . . . CUL4A 8451 broad.mit.edu 36 13 112947323 112947324 + Frame_Shift_Del DEL AA - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 AA AA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001008895 exon13 c.1393_1394del p.465_465del . . . TUBA3C 7278 broad.mit.edu 36 13 18649694 18649694 + Frame_Shift_Del DEL A - - rs9507567 byCluster;byFrequency;byHapMap TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NM_006001 exon4 c.429delT p.G143fs . . . ZMYM2 7750 broad.mit.edu 36 13 19536677 19536677 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_197968 exon19 c.3124delA p.K1042fs . . . LECT1 11061 broad.mit.edu 36 13 52211767 52211767 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011705 exon1 c.71delC p.P24fs . . . TRAF3 7187 broad.mit.edu 36 14 102433378 102433379 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001199427 exon6 c.598_599insA p.E200fs . . . DLK1 8788 broad.mit.edu 36 14 100270286 100270286 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003836 exon5 c.C452T p.A151V . . . DYNC1H1 1778 broad.mit.edu 36 14 101531295 101531295 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001376 exon15 c.T3469G p.S1157A . . . AKT1 207 broad.mit.edu 36 14 104310324 104310324 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014432 exon12 c.C1108T p.R370C . . . AHNAK2 113146 broad.mit.edu 36 14 104480083 104480083 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138420 exon7 c.G12750A p.A4250A . . . AHNAK2 113146 broad.mit.edu 36 14 104482296 104482296 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138420 exon7 c.C10537T p.Q3513X . . . AHNAK2 113146 broad.mit.edu 36 14 104485362 104485362 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138420 exon7 c.C7471T p.P2491S . . . AHNAK2 113146 broad.mit.edu 36 14 104490627 104490627 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138420 exon7 c.G2206A p.D736N . . . OR4N2 390429 broad.mit.edu 36 14 19365820 19365820 + Missense_Mutation SNP G A A rs4060171 unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004723 exon1 c.G373A p.A125T . . . OR4K15 81127 broad.mit.edu 36 14 19513939 19513939 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005486 exon1 c.C422T p.S141F . . . TEP1 7011 broad.mit.edu 36 14 19909563 19909563 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007110 exon50 c.G7145A p.G2382D . . . APEX1 328 broad.mit.edu 36 14 19994809 19994809 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080648 exon4 c.G389A p.G130D . . . ARHGEF40 55701 broad.mit.edu 36 14 20616226 20616226 + Silent SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018071 exon9 c.G2085T p.R695R . . . OR5AU1 390445 broad.mit.edu 36 14 20693090 20693090 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004731 exon1 c.G935A p.R312H . . . RPGRIP1 57096 broad.mit.edu 36 14 20863902 20863902 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020366 exon16 c.C2440T p.R814X . . . TOX4 9878 broad.mit.edu 36 14 21030643 21030643 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014828 exon7 c.T1028C p.V343A . . . OXA1L 5018 broad.mit.edu 36 14 22305616 22305616 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005015 exon1 c.G46T p.A16S . . . C14orf93 60686 broad.mit.edu 36 14 22535159 22535159 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130708 exon3 c.G756T p.E252D . . . TSSK4 283629 broad.mit.edu 36 14 23745723 23745723 + De_novo_Start_OutOfFrame SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174944 exon2 c.C394A p.L132M . . . GMPR2 51292 broad.mit.edu 36 14 23775088 23775088 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016576 exon4 c.G421A p.V141M . . . TGM1 7051 broad.mit.edu 36 14 23794212 23794212 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000359 exon12 c.A1733G p.D578G . . . NYNRIN 57523 broad.mit.edu 36 14 23950193 23950193 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025081 exon5 c.A2486G p.H829R . . . SSTR1 6751 broad.mit.edu 36 14 37748754 37748754 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001049 exon3 c.G409A p.D137N . . . PNN 5411 broad.mit.edu 36 14 38719588 38719588 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002687 exon9 c.A924C p.E308D . . . FSCB 84075 broad.mit.edu 36 14 44043801 44043801 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032135 exon1 c.G2140A p.V714I . . . FANCM 57697 broad.mit.edu 36 14 44706086 44706086 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020937 exon11 c.C1972T p.R658X . . . ATL1 51062 broad.mit.edu 36 14 50157131 50157131 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181598 exon9 c.C927A p.S309R . . . DLGAP5 9787 broad.mit.edu 36 14 54707217 54707217 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146015 exon11 c.G1343A p.C448Y . . . DAAM1 23002 broad.mit.edu 36 14 58900201 58900201 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014992 exon24 c.C2804A p.A935D . . . RTN1 6252 broad.mit.edu 36 14 59143943 59143943 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021136 exon4 c.C1786T p.R596W . . . PPM1A 5494 broad.mit.edu 36 14 59819200 59819200 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021003 exon2 c.A26C p.K9T . . . PPM1A 5494 broad.mit.edu 36 14 59819517 59819517 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021003 exon2 c.A343G p.M115V . . . SYT16 83851 broad.mit.edu 36 14 61617618 61617618 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031914 exon4 c.G1307A p.R436H . . . SYNE2 23224 broad.mit.edu 36 14 63523081 63523081 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015180 exon19 c.C2306T p.S769F . . . SYNE2 23224 broad.mit.edu 36 14 63601979 63601979 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015180 exon51 c.G10289T p.R3430M . . . SYNE2 23224 broad.mit.edu 36 14 63758125 63758125 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182913 exon7 c.G1084A p.D362N . . . AKAP5 9495 broad.mit.edu 36 14 64005423 64005423 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004857 exon2 c.C558T p.I186I . . . RDH11 51109 broad.mit.edu 36 14 67214821 67214821 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016026 exon7 c.T927C p.S309S . . . ADAM21 8747 broad.mit.edu 36 14 69994620 69994620 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003813 exon1 c.C651T p.N217N . . . SIPA1L1 26037 broad.mit.edu 36 14 71160581 71160581 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015556 exon4 c.G1693A p.A565T . . . RBM25 58517 broad.mit.edu 36 14 72639824 72639824 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021239 exon10 c.C1039T p.R347W . . . ALDH6A1 4329 broad.mit.edu 36 14 73608678 73608678 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005589 exon4 c.A329C p.Q110P . . . VRTN 55237 broad.mit.edu 36 14 73894449 73894449 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018228 exon2 c.C1210T p.R404W . . . LTBP2 4053 broad.mit.edu 36 14 74039765 74039765 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000428 exon33 c.C4798T p.R1600C . . . ESRRB 2103 broad.mit.edu 36 14 76034488 76034488 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004452 exon9 c.C1236T p.S412S . . . ADCK1 57143 broad.mit.edu 36 14 77467726 77467726 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142545 exon9 c.G1115A p.G372D . . . GALC 2581 broad.mit.edu 36 14 87470956 87470956 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000153 exon17 c.T1931A p.M644K . . . PTPN21 11099 broad.mit.edu 36 14 88016191 88016191 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007039 exon13 c.G1337A p.R446H . . . EML5 161436 broad.mit.edu 36 14 88193530 88193530 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183387 exon27 c.G3947A p.R1316H . . . RPS6KA5 9252 broad.mit.edu 36 14 90435488 90435488 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004755 exon12 c.G1411A p.A471T . . . TC2N 123036 broad.mit.edu 36 14 91328466 91328466 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128596 exon9 c.T1045C p.S349P . . . RIN3 79890 broad.mit.edu 36 14 92195393 92195393 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024832 exon7 c.G2161A p.A721T . . . AK7 122481 broad.mit.edu 36 14 96023071 96023071 + Silent SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152327 exon17 c.C2058A p.T686T . . . OSGEP 55644 broad.mit.edu 36 14 19990374 19990375 + Frame_Shift_Del DEL CT - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 CT CT Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017807 exon2 c.188_189del p.63_63del . . . C14orf39 317761 broad.mit.edu 36 14 59973318 59973318 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_174978 exon18 c.1762delT p.X588E . . . BTBD7 55727 broad.mit.edu 36 14 92830946 92830946 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018167 exon3 c.173delA p.K58fs . . . TARSL2 123283 broad.mit.edu 36 15 100029295 100029295 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152334 exon15 c.G1884T p.K628N . . . OR4M2 390538 broad.mit.edu 36 15 19870478 19870478 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004719 exon1 c.A539G p.D180G . . . OR4N4 283694 broad.mit.edu 36 15 19883987 19883987 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005241 exon1 c.T151C p.S51P . . . NIPA2 81614 broad.mit.edu 36 15 20557804 20557804 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008860 exon7 c.G941A p.R314Q . . . MKRN3 7681 broad.mit.edu 36 15 21362376 21362376 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005664 exon1 c.G354A p.S118S . . . NDN 4692 broad.mit.edu 36 15 21482773 21482773 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002487 exon1 c.G685T p.G229W . . . SNRPN 6638 broad.mit.edu 36 15 22771617 22771617 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022807 exon8 c.A23G p.K8R . . . UBE3A 7337 broad.mit.edu 36 15 23152213 23152213 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130839 exon9 c.G2043T p.Q681H . . . OCA2 4948 broad.mit.edu 36 15 25876345 25876345 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000275 exon16 c.C1768T p.L590L . . . HERC2 8924 broad.mit.edu 36 15 26093276 26093276 + Nonsense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004667 exon65 c.T9917G p.L3306X . . . HERC2 8924 broad.mit.edu 36 15 26149195 26149195 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004667 exon31 c.C4722T p.N1574N . . . TJP1 7082 broad.mit.edu 36 15 27851585 27851585 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175610 exon4 c.A286T p.R96W . . . ARHGAP11B 89839 broad.mit.edu 36 15 28713720 28713720 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039841 exon4 c.C353T p.A118V . . . FAN1 22909 broad.mit.edu 36 15 28987672 28987672 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146095 exon3 c.A1294G p.T432A . . . OTUD7A 161725 broad.mit.edu 36 15 29638677 29638677 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130901 exon3 c.C337T p.R113W . . . ARHGAP11A 9824 broad.mit.edu 36 15 30709215 30709215 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199357 exon8 c.G1065A p.L355L . . . RYR3 6263 broad.mit.edu 36 15 31659572 31659572 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon13 c.C1372T p.R458X . . . RYR3 6263 broad.mit.edu 36 15 31743102 31743102 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon36 c.G5491A p.D1831N . . . SLC12A6 9990 broad.mit.edu 36 15 32340493 32340493 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042497 exon2 c.C292T p.R98X . . . C15orf55 256646 broad.mit.edu 36 15 32430255 32430255 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175741 exon3 c.C784T p.P262S . . . THBS1 7057 broad.mit.edu 36 15 37670036 37670036 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003246 exon14 c.G2173T p.G725W . . . MGA 23269 broad.mit.edu 36 15 39845707 39845707 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164273 exon24 c.C8135T p.T2712M . . . UBR1 197131 broad.mit.edu 36 15 41100850 41100850 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174916 exon27 c.C2855T p.A952V . . . TP53BP1 7158 broad.mit.edu 36 15 41486904 41486904 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005657 exon28 c.C5888T p.P1963L . . . DUOX2 50506 broad.mit.edu 36 15 43186358 43186358 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014080 exon15 c.G1795A p.A599T . . . DUOX1 53905 broad.mit.edu 36 15 43222765 43222765 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017434 exon17 c.G1908A p.V636V . . . SLC12A1 6557 broad.mit.edu 36 15 46354097 46354097 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184832 exon20 c.A2440G p.R814G . . . SLC12A1 6557 broad.mit.edu 36 15 46371344 46371344 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184832 exon24 c.A2951C p.N984T . . . CCPG1 9236 broad.mit.edu 36 15 53439802 53439802 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004748 exon8 c.T1461C p.G487G . . . CCPG1 9236 broad.mit.edu 36 15 53457802 53457802 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004748 exon4 c.C240T p.S80S . . . ZNF280D 54816 broad.mit.edu 36 15 54786594 54786594 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017661 exon3 c.C6T p.G2G . . . LIPC 3990 broad.mit.edu 36 15 56627829 56627829 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000236 exon6 c.C817A p.Q273K . . . RNF111 54778 broad.mit.edu 36 15 57110559 57110559 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017610 exon2 c.G246A p.Q82Q . . . MYO1E 4643 broad.mit.edu 36 15 57257895 57257895 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004998 exon19 c.G2038A p.A680T . . . TLN2 83660 broad.mit.edu 36 15 60772376 60772376 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015059 exon10 c.G1159A p.E387K . . . IGDCC3 9543 broad.mit.edu 36 15 63412653 63412653 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004884 exon6 c.T977G p.V326G . . . DPP8 54878 broad.mit.edu 36 15 63580098 63580098 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017743 exon4 c.G445A p.G149R . . . SLC24A1 9187 broad.mit.edu 36 15 63733350 63733350 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004727 exon10 c.C3180T p.C1060C . . . DENND4A 10260 broad.mit.edu 36 15 63821130 63821130 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144823 exon5 c.C608T p.T203M . . . DIS3L 115752 broad.mit.edu 36 15 64400049 64400049 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143688 exon9 c.C1251T p.I417I . . . RPL4 6124 broad.mit.edu 36 15 64582888 64582888 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000968 exon2 c.G37A p.E13K . . . IQCH 64799 broad.mit.edu 36 15 65451767 65451767 + Missense_Mutation SNP T C C rs34599707 unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031715 exon9 c.T1018C p.Y340H . . . SKOR1 390598 broad.mit.edu 36 15 65913168 65913168 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031807 exon10 c.G2706A p.K902K . . . PIAS1 8554 broad.mit.edu 36 15 66253155 66253155 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016166 exon9 c.G1040A p.R347Q . . . ITGA11 22801 broad.mit.edu 36 15 66444165 66444165 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004439 exon4 c.C291T p.S97S . . . NOX5 79400 broad.mit.edu 36 15 67115273 67115273 + Silent SNP G C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184779 exon7 c.G1047C p.L349L . . . KIF23 9493 broad.mit.edu 36 15 67519706 67519706 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004856 exon17 c.T1893C p.R631R . . . CT62 196993 broad.mit.edu 36 15 69191570 69191570 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102658 exon3 c.T106C p.S36P . . . GRAMD2 196996 broad.mit.edu 36 15 70241737 70241737 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012642 exon11 c.C992T p.A331V . . . PML 5371 broad.mit.edu 36 15 72123654 72123654 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033238 exon9 c.G1901T p.S634I . . . MAN2C1 4123 broad.mit.edu 36 15 73437672 73437672 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006715 exon21 c.G2470A p.A824T . . . UBE2Q2 92912 broad.mit.edu 36 15 73948403 73948403 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145335 exon4 c.T396C p.A132A . . . LINGO1 84894 broad.mit.edu 36 15 75693809 75693809 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032808 exon2 c.G1495A p.A499T . . . LINGO1 84894 broad.mit.edu 36 15 75694109 75694109 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032808 exon2 c.C1195T p.P399S . . . ACSBG1 23205 broad.mit.edu 36 15 76253835 76253835 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199377 exon12 c.G1777A p.A593T . . . PSMA4 5685 broad.mit.edu 36 15 76628300 76628300 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102668 exon8 c.C532T p.R178C . . . RASGRF1 5923 broad.mit.edu 36 15 77052729 77052729 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002891 exon26 c.G3631A p.G1211S . . . ZFAND6 54469 broad.mit.edu 36 15 78210599 78210599 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019006 exon6 c.G387A p.Q129Q . . . IL16 3603 broad.mit.edu 36 15 79388125 79388125 + Silent SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172128 exon19 c.A3927T p.G1309G . . . TM6SF1 53346 broad.mit.edu 36 15 81575603 81575603 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023003 exon3 c.T199C p.Y67H . . . BNC1 646 broad.mit.edu 36 15 81722743 81722743 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001717 exon4 c.G2264A p.C755Y . . . ZNF592 9640 broad.mit.edu 36 15 83142569 83142569 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014630 exon7 c.T2596C p.C866R . . . ALPK3 57538 broad.mit.edu 36 15 83171816 83171816 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020778 exon3 c.G886A p.V296I . . . AKAP13 11214 broad.mit.edu 36 15 83877923 83877923 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006738 exon4 c.G286A p.A96T . . . AKAP13 11214 broad.mit.edu 36 15 83925344 83925344 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006738 exon7 c.C3041T p.A1014V . . . KLHL25 64410 broad.mit.edu 36 15 84113828 84113828 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022480 exon2 c.C218T p.A73V . . . AEN 64782 broad.mit.edu 36 15 86973523 86973523 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022767 exon3 c.G603A p.A201A . . . ACAN 176 broad.mit.edu 36 15 87183158 87183158 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135 exon3 c.G331T p.A111S . . . MESP2 145873 broad.mit.edu 36 15 88122308 88122308 + Silent SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039958 exon2 c.T933A p.S311S . . . IDH2 3418 broad.mit.edu 36 15 88428539 88428539 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002168 exon11 c.T1322C p.I441T . . . MAN2A2 4122 broad.mit.edu 36 15 89254746 89254746 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006122 exon10 c.T1589C p.V530A . . . MCTP2 55784 broad.mit.edu 36 15 92802383 92802383 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159643 exon17 c.A2099G p.K700R . . . NR2F2 7026 broad.mit.edu 36 15 94681722 94681722 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145155 exon3 c.G713A p.R238H . . . LRRK1 79705 broad.mit.edu 36 15 99426498 99426498 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024652 exon34 c.C5970T p.G1990G . . . ULK3 25989 broad.mit.edu 36 15 72919973 72919973 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099436 exon5 c.532delC p.L178fs . . . ZNF843 283933 broad.mit.edu 36 16 31355656 31355657 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001136509 exon2 c.16_17insC p.F6fs . . . GRIN2A 2903 broad.mit.edu 36 16 10181591 10181591 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134408 exon2 c.C179T p.A60V . . . CIITA 4261 broad.mit.edu 36 16 10924626 10924626 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000246 exon19 c.C3358A p.L1120M . . . MYH11 4629 broad.mit.edu 36 16 15726256 15726256 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040114 exon30 c.A3974G p.Q1325R . . . ABCC1 4363 broad.mit.edu 36 16 16126264 16126264 + Nonsense_Mutation SNP C G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019862 exon24 c.C3531G p.Y1177X . . . PDILT 204474 broad.mit.edu 36 16 20278215 20278215 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174924 exon12 c.T1682A p.V561E . . . DNAH3 55567 broad.mit.edu 36 16 20883676 20883676 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017539 exon53 c.G9031A p.A3011T . . . DNAH3 55567 broad.mit.edu 36 16 20940907 20940907 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017539 exon40 c.T5663C p.M1888T . . . DNAH3 55567 broad.mit.edu 36 16 20981444 20981444 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017539 exon25 c.C3580T p.R1194X . . . DNAH3 55567 broad.mit.edu 36 16 21064852 21064852 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017539 exon2 c.C176A p.P59H . . . MLST8 64223 broad.mit.edu 36 16 2197076 2197076 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199174 exon5 c.C384T p.N128N . . . HS3ST2 9956 broad.mit.edu 36 16 22833928 22833928 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006043 exon2 c.G648A p.T216T . . . USP31 57478 broad.mit.edu 36 16 23005990 23005990 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020718 exon9 c.C1546T p.R516C . . . SCNN1G 6340 broad.mit.edu 36 16 23105250 23105250 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039 exon2 c.C157T p.R53C . . . ARHGAP17 55114 broad.mit.edu 36 16 24868277 24868277 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006634 exon13 c.A1076G p.D359G . . . TUFM 7284 broad.mit.edu 36 16 28762889 28762889 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003321 exon8 c.C957T p.A319A . . . SPNS1 83985 broad.mit.edu 36 16 28903038 28903038 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142449 exon10 c.G1282A p.E428K . . . SEZ6L2 26470 broad.mit.edu 36 16 29815694 29815694 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114100 exon3 c.C461T p.T154M . . . MMP25 64386 broad.mit.edu 36 16 3047317 3047317 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022468 exon6 c.G844A p.A282T . . . BCKDK 10295 broad.mit.edu 36 16 31031044 31031044 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005881 exon12 c.G1196A p.R399Q . . . ITGAM 3684 broad.mit.edu 36 16 31243567 31243567 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000632 exon18 c.T2252C p.V751A . . . C16orf58 64755 broad.mit.edu 36 16 31418150 31418150 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022744 exon5 c.A574T p.T192S . . . ZNF267 10308 broad.mit.edu 36 16 31834312 31834312 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003414 exon4 c.G1241A p.G414D . . . SLX4 84464 broad.mit.edu 36 16 3579301 3579301 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032444 exon12 c.G4339T p.G1447C . . . SLX4 84464 broad.mit.edu 36 16 3596683 3596683 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032444 exon3 c.G553T p.D185Y . . . CREBBP 1387 broad.mit.edu 36 16 3719830 3719830 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004380 exon31 c.A5219G p.H1740R . . . CREBBP 1387 broad.mit.edu 36 16 3721279 3721279 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004380 exon30 c.A5087G p.H1696R . . . NETO2 81831 broad.mit.edu 36 16 45719960 45719960 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018092 exon4 c.G258A p.L86L . . . ZNF423 23090 broad.mit.edu 36 16 48228729 48228729 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015069 exon5 c.T1835C p.V612A . . . RHBDF1 64285 broad.mit.edu 36 16 48713 48713 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022450 exon18 c.G2194A p.V732M . . . ADCY7 113 broad.mit.edu 36 16 48906515 48906515 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114 exon24 c.C3061T p.R1021X . . . NAGPA 51172 broad.mit.edu 36 16 5015527 5015527 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016256 exon10 c.G1501A p.A501T . . . MT1A 4489 broad.mit.edu 36 16 55230720 55230720 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005946 exon2 c.C72T p.C24C . . . SLC12A3 6559 broad.mit.edu 36 16 55464073 55464073 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000339 exon8 c.C969T p.D323D . . . HERPUD1 9709 broad.mit.edu 36 16 55531639 55531639 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014685 exon6 c.G886A p.A296T . . . CCDC102A 92922 broad.mit.edu 36 16 56104210 56104210 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033212 exon9 c.G1597A p.E533K . . . ZNF319 57567 broad.mit.edu 36 16 56588973 56588973 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020807 exon2 c.C698T p.T233M . . . CNOT1 23019 broad.mit.edu 36 16 57135266 57135266 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206999 exon31 c.C4180T p.R1394C . . . CDH11 1009 broad.mit.edu 36 16 63539143 63539143 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001797 exon13 c.C2255T p.A752V . . . CES4A 283848 broad.mit.edu 36 16 65595541 65595541 + Silent SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190201 exon7 c.T699G p.P233P . . . KIAA0895L 653319 broad.mit.edu 36 16 65771824 65771824 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040715 exon2 c.A191G p.Q64R . . . FAM65A 79567 broad.mit.edu 36 16 66134034 66134034 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193522 exon13 c.C1856A p.P619H . . . DDX28 55794 broad.mit.edu 36 16 66613588 66613588 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018380 exon1 c.T1019C p.L340S . . . PDPR 55066 broad.mit.edu 36 16 68734982 68734982 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017990 exon14 c.C1674T p.G558G . . . COG4 25839 broad.mit.edu 36 16 69072501 69072501 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015386 exon19 c.G2283A p.T761T . . . SF3B3 23450 broad.mit.edu 36 16 69145991 69145991 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012426 exon12 c.C1544T p.A515V . . . HYDIN 54768 broad.mit.edu 36 16 69487409 69487409 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon54 c.G9121A p.A3041T . . . ZFHX3 463 broad.mit.edu 36 16 71551058 71551058 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006885 exon2 c.G488C p.S163T . . . MON1B 22879 broad.mit.edu 36 16 75786045 75786045 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014940 exon4 c.C788T p.A263V . . . ADAMTS18 170692 broad.mit.edu 36 16 75953574 75953574 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199355 exon7 c.G1145A p.R382K ADAMTS18,large_intestine,colon,Substitution - Missense,0 . . NUDT7 283927 broad.mit.edu 36 16 76327268 76327268 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105663 exon3 c.C232T p.R78C . . . CENPN 55839 broad.mit.edu 36 16 79611327 79611327 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018455 exon6 c.C476T p.P159L . . . GAN 8139 broad.mit.edu 36 16 79948941 79948941 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022041 exon5 c.C877T p.R293X . . . MBTPS1 8720 broad.mit.edu 36 16 82645632 82645632 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003791 exon23 c.C3082T p.P1028S . . . USP10 9100 broad.mit.edu 36 16 83350472 83350472 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005153 exon6 c.A1287G p.T429T . . . KIAA0182 23199 broad.mit.edu 36 16 84257306 84257306 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134473 exon12 c.C2670T p.G890G . . . FOXF1 2294 broad.mit.edu 36 16 85101991 85101991 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001451 exon1 c.C315T p.C105C . . . JPH3 57338 broad.mit.edu 36 16 86235921 86235921 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020655 exon2 c.C939T p.G313G . . . CA5A 763 broad.mit.edu 36 16 86493574 86493574 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001739 exon4 c.C513T p.V171V . . . ZC3H18 124245 broad.mit.edu 36 16 87192224 87192224 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144604 exon4 c.G826A p.A276T . . . USP7 7874 broad.mit.edu 36 16 8901078 8901078 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003470 exon22 c.G2347A p.A783T . . . NTAN1 123803 broad.mit.edu 36 16 15039491 15039491 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173474 exon10 c.831delA p.K277fs . . . SPN 6693 broad.mit.edu 36 16 29583739 29583739 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001030288 exon2 c.1189delG p.G397fs . . . PRRT2 112476 broad.mit.edu 36 16 29732517 29732517 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145239 exon2 c.641delC p.A214fs . . . CLDN6 9074 broad.mit.edu 36 16 3005487 3005487 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021195 exon2 c.537delG p.G179fs . . . CYLD 1540 broad.mit.edu 36 16 49383020 49383020 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015247 exon16 c.2159delA p.E720fs . . . CHST4 10164 broad.mit.edu 36 16 70128094 70128094 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166395 exon2 c.13delA p.K5fs . . . PLCG2 5336 broad.mit.edu 36 16 80462012 80462012 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002661 exon7 c.619delA p.K207fs . . . CCDC137 339230 broad.mit.edu 36 17 77247879 77247880 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_199287 exon3 c.488_489insA p.A163fs . . . MYH13 8735 broad.mit.edu 36 17 10206210 10206210 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003802 exon5 c.C455T p.P152L . . . MYH4 4622 broad.mit.edu 36 17 10288729 10288729 + Missense_Mutation SNP G A A rs34260986 byCluster;byFrequency TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017533 exon39 c.C5584T p.R1862C . . . MYH1 4619 broad.mit.edu 36 17 10345164 10345164 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005963 exon27 c.C3726T p.V1242V . . . MYH1 4619 broad.mit.edu 36 17 10347186 10347186 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005963 exon23 c.T2796C p.D932D . . . MYH3 4621 broad.mit.edu 36 17 10498990 10498990 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002470 exon2 c.C117T p.F39F . . . DNAH9 1770 broad.mit.edu 36 17 11719088 11719088 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001372 exon53 c.G10340A p.R3447H . . . YWHAE 7531 broad.mit.edu 36 17 1211268 1211268 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006761 exon4 c.T446G p.L149R . . . CRK 1398 broad.mit.edu 36 17 1286883 1286883 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016823 exon2 c.C558T p.Y186Y . . . RILP 83547 broad.mit.edu 36 17 1497982 1497982 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031430 exon6 c.C841T p.R281W . . . PRPF8 10594 broad.mit.edu 36 17 1533607 1533607 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006445 exon3 c.A239G p.K80R . . . MPRIP 23164 broad.mit.edu 36 17 16922063 16922063 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015134 exon3 c.G215A p.R72Q . . . RAI1 10743 broad.mit.edu 36 17 17637891 17637891 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030665 exon3 c.A904C p.T302P . . . RAI1 10743 broad.mit.edu 36 17 17638194 17638194 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030665 exon3 c.G1207A p.A403T . . . RTN4RL1 146760 broad.mit.edu 36 17 1787079 1787079 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178568 exon2 c.G787A p.A263T . . . LLGL1 3996 broad.mit.edu 36 17 18078952 18078952 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004140 exon9 c.G980A p.R327Q . . . SPECC1 92521 broad.mit.edu 36 17 20089971 20089971 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033555 exon6 c.G2249A p.R750H . . . SMG6 23293 broad.mit.edu 36 17 2148974 2148974 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170957 exon2 c.G1730A p.G577D . . . MNT 4335 broad.mit.edu 36 17 2237689 2237689 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020310 exon6 c.T1005C p.G335G . . . PIGS 94005 broad.mit.edu 36 17 23914611 23914611 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033198 exon5 c.T433C p.Y145H . . . ERAL1 26284 broad.mit.edu 36 17 24209939 24209939 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005702 exon7 c.C931A p.L311I . . . CPD 1362 broad.mit.edu 36 17 25773900 25773900 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199775 exon5 c.A649G p.T217A . . . GOSR1 9527 broad.mit.edu 36 17 25841348 25841348 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007024 exon5 c.C232T p.R78X . . . C17orf102 400591 broad.mit.edu 36 17 29928698 29928698 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207454 exon2 c.G465A p.R155R . . . TMEM132E 124842 broad.mit.edu 36 17 29980175 29980175 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207313 exon5 c.C907T p.L303L . . . LIG3 3980 broad.mit.edu 36 17 30348955 30348955 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013975 exon12 c.A1909G p.T637A . . . FNDC8 54752 broad.mit.edu 36 17 30478468 30478468 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017559 exon2 c.G504A p.T168T . . . OR1A2 26189 broad.mit.edu 36 17 3047980 3047980 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012352 exon1 c.T418G p.S140A . . . AP2B1 163 broad.mit.edu 36 17 30959471 30959471 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001282 exon5 c.G477T p.Q159H . . . ACACA 31 broad.mit.edu 36 17 32671555 32671555 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198834 exon24 c.T3071C p.V1024A . . . GPR179 440435 broad.mit.edu 36 17 33736244 33736244 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004334 exon11 c.A6734G p.E2245G . . . GPR179 440435 broad.mit.edu 36 17 33736944 33736944 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004334 exon11 c.A6034G p.S2012G . . . MLLT6 4302 broad.mit.edu 36 17 34116771 34116771 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005937 exon2 c.G152A p.C51Y . . . PIP4K2B 8396 broad.mit.edu 36 17 34187568 34187568 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003559 exon7 c.G705A p.L235L . . . SHPK 23729 broad.mit.edu 36 17 3460831 3460831 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013276 exon7 c.C1209A p.C403X . . . NEUROD2 4761 broad.mit.edu 36 17 35015825 35015825 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006160 exon2 c.T554C p.L185P . . . P2RX5 5026 broad.mit.edu 36 17 3529732 3529732 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002561 exon11 c.C1160T p.P387L . . . GSDMA 284110 broad.mit.edu 36 17 35385758 35385758 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178171 exon11 c.A1077G p.L359L . . . WIPF2 147179 broad.mit.edu 36 17 35674623 35674623 + Silent SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133264 exon5 c.A669T p.G223G . . . KRT25 147183 broad.mit.edu 36 17 36164165 36164165 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181534 exon2 c.A511G p.K171E . . . JUP 3728 broad.mit.edu 36 17 37167514 37167514 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021991 exon11 c.C1822T p.L608L . . . NAGLU 4669 broad.mit.edu 36 17 37946729 37946729 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000263 exon5 c.G1000A p.V334I . . . MLX 6945 broad.mit.edu 36 17 37974479 37974479 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198205 exon3 c.G178A p.A60T . . . EZH1 2145 broad.mit.edu 36 17 38109328 38109328 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001991 exon19 c.T2054A p.I685N . . . AOC3 8639 broad.mit.edu 36 17 38257266 38257266 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003734 exon1 c.T380C p.I127T . . . IFI35 3430 broad.mit.edu 36 17 38418702 38418702 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005533 exon3 c.C233T p.A78V . . . VAT1 10493 broad.mit.edu 36 17 38424307 38424307 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006373 exon2 c.G423A p.G141G . . . BRCA1 672 broad.mit.edu 36 17 38499608 38499608 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007294 exon10 c.A1466G p.E489G . . . MPP2 4355 broad.mit.edu 36 17 39315266 39315266 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005374 exon6 c.G593T p.R198L . . . GRN 2896 broad.mit.edu 36 17 39785360 39785360 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002087 exon12 c.C1539T p.H513H . . . FZD2 2535 broad.mit.edu 36 17 39992127 39992127 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001466 exon1 c.G1545A p.S515S . . . DBF4B 80174 broad.mit.edu 36 17 40181359 40181359 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025104 exon13 c.G1189A p.V397M . . . ARHGAP27 201176 broad.mit.edu 36 17 40837655 40837655 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199282 exon5 c.G329A p.S110N . . . KIAA1267 284058 broad.mit.edu 36 17 41604859 41604859 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015443 exon2 c.C428T p.T143M . . . ITGB3 3690 broad.mit.edu 36 17 42735142 42735142 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000212 exon13 c.G2071A p.V691I . . . MYBBP1A 10514 broad.mit.edu 36 17 4391573 4391573 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014520 exon24 c.G3231A p.A1077A . . . IGF2BP1 10642 broad.mit.edu 36 17 44478362 44478362 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160423 exon11 c.A1090G p.I364V . . . SLC35B1 10237 broad.mit.edu 36 17 45133823 45133823 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005827 exon9 c.A965T p.H322L . . . CHAD 1101 broad.mit.edu 36 17 45900405 45900405 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001267 exon1 c.G769T p.E257X . . . MYCBPAP 84073 broad.mit.edu 36 17 45959742 45959742 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032133 exon15 c.G2394A p.L798L . . . SPATA20 64847 broad.mit.edu 36 17 45983079 45983079 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022827 exon11 c.C1185T p.F395F . . . WFIKKN2 124857 broad.mit.edu 36 17 46273166 46273166 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175575 exon2 c.C1518T p.V506V . . . CAMTA2 23125 broad.mit.edu 36 17 4816521 4816521 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015099 exon16 c.G2538A p.S846S . . . KIF2B 84643 broad.mit.edu 36 17 49255977 49255977 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032559 exon1 c.G584A p.R195H . . . PCTP 58488 broad.mit.edu 36 17 51207214 51207214 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021213 exon5 c.G574A p.A192T . . . TRIM25 7706 broad.mit.edu 36 17 52324376 52324376 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005082 exon9 c.T1577C p.V526A . . . MIS12 79003 broad.mit.edu 36 17 5333468 5333468 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024039 exon3 c.C562T p.L188L . . . NLRP1 22861 broad.mit.edu 36 17 5359077 5359077 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033007 exon15 c.T3921C p.F1307F . . . LPO 4025 broad.mit.edu 36 17 53681510 53681510 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006151 exon5 c.G416A p.R139H . . . RNF43 54894 broad.mit.edu 36 17 53790071 53790071 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017763 exon9 c.G2065A p.A689T . . . MTMR4 9110 broad.mit.edu 36 17 53928577 53928577 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004687 exon16 c.T1925C p.V642A . . . TEX14 56155 broad.mit.edu 36 17 54031755 54031755 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198393 exon14 c.A1950G p.G650G . . . TEX14 56155 broad.mit.edu 36 17 54055212 54055212 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198393 exon4 c.A412G p.T138A . . . TRIM37 4591 broad.mit.edu 36 17 54474026 54474026 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005207 exon17 c.T1683C p.D561D . . . C17orf71 55181 broad.mit.edu 36 17 54645643 54645643 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018149 exon3 c.T2677C p.S893P . . . TUBD1 51174 broad.mit.edu 36 17 55306682 55306682 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193613 exon3 c.G286T p.G96C . . . CA4 762 broad.mit.edu 36 17 55589581 55589581 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000717 exon4 c.C280T p.L94L . . . INTS2 57508 broad.mit.edu 36 17 57344183 57344183 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020748 exon6 c.G704A p.R235Q . . . EFCAB3 146779 broad.mit.edu 36 17 57847244 57847244 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173503 exon10 c.G1139A p.W380X . . . STRADA 92335 broad.mit.edu 36 17 59135650 59135650 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165969 exon9 c.A796T p.T266S . . . FTSJ3 117246 broad.mit.edu 36 17 59256365 59256365 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017647 exon7 c.T564C p.H188H . . . GH1 2688 broad.mit.edu 36 17 59348514 59348514 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022560 exon4 c.G421A p.A141T . . . SCN4A 6329 broad.mit.edu 36 17 59375874 59375874 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000334 exon21 c.A3803G p.N1268S . . . WSCD1 23302 broad.mit.edu 36 17 5964433 5964433 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015253 exon9 c.C1456T p.L486L . . . ABCA9 10350 broad.mit.edu 36 17 64528210 64528210 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080283 exon19 c.C2514T p.G838G . . . KCNJ2 3759 broad.mit.edu 36 17 65683428 65683428 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000891 exon2 c.G653A p.R218Q . . . TEKT1 83659 broad.mit.edu 36 17 6659223 6659223 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053285 exon5 c.C612T p.A204A . . . SLC39A11 201266 broad.mit.edu 36 17 68156679 68156679 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159770 exon9 c.G808A p.G270S . . . C17orf80 55028 broad.mit.edu 36 17 68743234 68743234 + Silent SNP C G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100622 exon3 c.C18G p.P6P . . . SDK2 54549 broad.mit.edu 36 17 68865873 68865873 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144952 exon40 c.T5533C p.S1845P . . . SLC9A3R1 9368 broad.mit.edu 36 17 70269852 70269852 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004252 exon2 c.A548T p.D183V . . . FADS6 283985 broad.mit.edu 36 17 70387140 70387140 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178128 exon5 c.A895G p.M299V . . . DVL2 1856 broad.mit.edu 36 17 7073063 7073063 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004422 exon9 c.T983C p.M328T . . . ACAP1 9744 broad.mit.edu 36 17 7190908 7190908 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014716 exon13 c.G1065A p.V355V . . . TNRC6C 57690 broad.mit.edu 36 17 73558109 73558109 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018996 exon4 c.C1371T p.N457N . . . DNAH2 146754 broad.mit.edu 36 17 7661709 7661709 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020877 exon65 c.G10126A p.A3376T . . . NPLOC4 55666 broad.mit.edu 36 17 77199645 77199645 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017921 exon3 c.G161A p.G54E . . . CHD3 1107 broad.mit.edu 36 17 7737458 7737458 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005852 exon5 c.G639A p.A213A . . . CHD3 1107 broad.mit.edu 36 17 7738589 7738589 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005852 exon8 c.C1207A p.L403I . . . HEXDC 284004 broad.mit.edu 36 17 77988475 77988475 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173620 exon8 c.G846A p.A282A . . . B3GNTL1 146712 broad.mit.edu 36 17 78586257 78586257 + De_novo_Start_InFrame SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009905 exon4 c.C285T p.Y95Y . . . PER1 5187 broad.mit.edu 36 17 7993878 7993878 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002616 exon5 c.G571A p.E191K . . . NDEL1 81565 broad.mit.edu 36 17 8304083 8304083 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025579 exon8 c.A824T p.N275I . . . GLP2R 9340 broad.mit.edu 36 17 9733694 9733694 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004246 exon13 c.G1609T p.D537Y . . . SHMT1 6470 broad.mit.edu 36 17 18191614 18191614 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004169 exon5 c.440delG p.G147fs . . . NOS2 4843 broad.mit.edu 36 17 23118898 23118898 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000625 exon18 c.2127delC p.Y709X . . . C17orf85 55421 broad.mit.edu 36 17 3663203 3663203 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001114118 exon13 c.1747delG p.A583fs . . . SPAG9 9043 broad.mit.edu 36 17 46432040 46432040 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003971 exon13 c.1603delA p.R535fs . . . RNF43 54894 broad.mit.edu 36 17 53790160 53790160 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017763 exon9 c.1976delG p.G659fs . . . ACE 1636 broad.mit.edu 36 17 58914158 58914158 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000789 exon9 c.1379delA p.E460fs . . . TOM1L1 10040 broad.mit.edu 36 17 50369592 50369592 + Nonstop_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . MC2R 4158 broad.mit.edu 36 18 13875485 13875485 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000529 exon2 c.C33T p.I11I . . . DSG3 1830 broad.mit.edu 36 18 27291033 27291033 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001944 exon3 c.C164T p.A55V . . . SMCHD1 23347 broad.mit.edu 36 18 2733861 2733861 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015295 exon29 c.C3736T p.R1246X . . . SMCHD1 23347 broad.mit.edu 36 18 2741361 2741361 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015295 exon33 c.G4251A p.L1417L . . . TRAPPC8 22878 broad.mit.edu 36 18 27708569 27708569 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014939 exon13 c.C1825T p.R609C . . . DTNA 1837 broad.mit.edu 36 18 30654799 30654799 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198938 exon10 c.G923T p.S308I . . . ELP2 55250 broad.mit.edu 36 18 31998541 31998541 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018255 exon18 c.T1867C p.S623P . . . FHOD3 80206 broad.mit.edu 36 18 32551974 32551974 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025135 exon16 c.T2190C p.L730L . . . DLGAP1 9229 broad.mit.edu 36 18 3492621 3492621 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003809 exon9 c.C1688A p.P563H . . . SETBP1 26040 broad.mit.edu 36 18 40786039 40786039 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015559 exon4 c.G2736T p.K912N . . . HAUS1 115106 broad.mit.edu 36 18 41958851 41958851 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138443 exon7 c.A732T p.L244F . . . HDHD2 84064 broad.mit.edu 36 18 42893367 42893367 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032124 exon6 c.C655T p.L219L . . . MRO 83876 broad.mit.edu 36 18 46587090 46587090 + Silent SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031939 exon4 c.C228A p.A76A . . . DCC 1630 broad.mit.edu 36 18 48843766 48843766 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005215 exon6 c.C1079A p.P360H . . . WDR7 23335 broad.mit.edu 36 18 52845329 52845329 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015285 exon28 c.T4366C p.S1456P . . . EPB41L3 23136 broad.mit.edu 36 18 5396869 5396869 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012307 exon16 c.G2256A p.T752T . . . NEDD4L 23327 broad.mit.edu 36 18 54159322 54159322 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015277 exon13 c.C1138T p.R380C . . . EPB41L3 23136 broad.mit.edu 36 18 5435192 5435192 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012307 exon4 c.T433G p.L145V . . . ARHGAP28 79822 broad.mit.edu 36 18 6858208 6858208 + Silent SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010000 exon5 c.A309T p.G103G . . . ARHGAP28 79822 broad.mit.edu 36 18 6872152 6872152 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010000 exon10 c.T830C p.L277P . . . LAMA1 284217 broad.mit.edu 36 18 6954726 6954726 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005559 exon51 c.T7272C p.S2424S . . . LAMA1 284217 broad.mit.edu 36 18 7039112 7039112 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005559 exon5 c.G733A p.E245K . . . ZNF236 7776 broad.mit.edu 36 18 72709757 72709757 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007345 exon4 c.C486T p.F162F . . . ZNF236 7776 broad.mit.edu 36 18 72735966 72735966 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007345 exon10 c.G1421A p.R474H . . . ZNF236 7776 broad.mit.edu 36 18 72768119 72768119 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007345 exon23 c.C4160T p.T1387M . . . PTPRM 5797 broad.mit.edu 36 18 8360941 8360941 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002845 exon22 c.A3069C p.K1023N . . . ANKRD12 23253 broad.mit.edu 36 18 9201613 9201613 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015208 exon6 c.G483A p.T161T . . . RALBP1 10928 broad.mit.edu 36 18 9523423 9523423 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006788 exon8 c.C1546T p.R516C . . . SERPINB10 5273 broad.mit.edu 36 18 59735719 59735719 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005024 exon2 c.218delA p.E73fs . . . RBFA 79863 broad.mit.edu 36 18 75906865 75906865 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001171967 exon6 c.669delA p.T223fs . . . ANGPTL6 83854 broad.mit.edu 36 19 10066579 10066579 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031917 exon3 c.G618A p.P206P . . . ABCA7 10347 broad.mit.edu 36 19 1007917 1007917 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019112 exon34 c.C4598T p.S1533L . . . KEAP1 9817 broad.mit.edu 36 19 10471337 10471337 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203500 exon2 c.A373G p.I125V . . . ATG4D 84971 broad.mit.edu 36 19 10523903 10523903 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032885 exon9 c.G1145A p.R382H . . . SLC44A2 57153 broad.mit.edu 36 19 10603209 10603209 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020428 exon7 c.C500A p.P167H . . . ZNF700 90592 broad.mit.edu 36 19 11920853 11920853 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144566 exon4 c.A1014G p.Q338Q . . . CACNA1A 773 broad.mit.edu 36 19 13271103 13271103 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001174080 exon19 c.C2347T p.R783X . . . ASF1B 55723 broad.mit.edu 36 19 14098031 14098031 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018154 exon2 c.T128G p.I43S . . . CCDC105 126402 broad.mit.edu 36 19 14992279 14992279 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173482 exon3 c.G682A p.A228T . . . OR1I1 126370 broad.mit.edu 36 19 15059440 15059440 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004713 exon1 c.C564T p.S188S . . . ILVBL 10994 broad.mit.edu 36 19 15088063 15088063 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006844 exon12 c.G1371A p.T457T . . . OR10H1 26539 broad.mit.edu 36 19 15779449 15779449 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013940 exon1 c.C399T p.N133N . . . C19orf44 84167 broad.mit.edu 36 19 16475030 16475030 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032207 exon3 c.G914A p.S305N . . . NWD1 284434 broad.mit.edu 36 19 16751222 16751222 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007525 exon12 c.G2677A p.A893T . . . CPAMD8 27151 broad.mit.edu 36 19 16897130 16897130 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015692 exon26 c.G3564A p.P1188P . . . USHBP1 83878 broad.mit.edu 36 19 17234374 17234374 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031941 exon4 c.C629T p.T210M . . . UNC13A 23025 broad.mit.edu 36 19 17593650 17593650 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080421 exon35 c.A4233G p.G1411G . . . UNC13A 23025 broad.mit.edu 36 19 17621388 17621388 + Missense_Mutation SNP C T T rs34741580 unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080421 exon13 c.G1448A p.G483D . . . KIAA1683 80726 broad.mit.edu 36 19 18229624 18229624 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025249 exon4 c.C2909A p.A970E . . . UBA52 7311 broad.mit.edu 36 19 18546770 18546770 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033930 exon4 c.T281C p.M94T . . . DDX49 54555 broad.mit.edu 36 19 18899980 18899980 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019070 exon13 c.T1307C p.I436T . . . SUGP2 10147 broad.mit.edu 36 19 18997781 18997781 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014884 exon3 c.C376T p.R126W . . . MAU2 23383 broad.mit.edu 36 19 19326227 19326227 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015329 exon17 c.C1612T p.Q538X . . . TSSK6 83983 broad.mit.edu 36 19 19486969 19486969 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032037 exon1 c.A268G p.M90V . . . LPAR2 9170 broad.mit.edu 36 19 19598408 19598408 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004720 exon2 c.A686G p.H229R . . . MOBKL2A 126308 broad.mit.edu 36 19 2029328 2029328 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130807 exon3 c.A232G p.T78A . . . ZNF100 163227 broad.mit.edu 36 19 21702332 21702332 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173531 exon5 c.A622G p.K208E . . . ZNF99 7652 broad.mit.edu 36 19 22731737 22731737 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080409 exon6 c.A2434T p.N812Y . . . MIER2 54531 broad.mit.edu 36 19 278962 278962 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017550 exon4 c.C271T p.L91F . . . ZNF555 148254 broad.mit.edu 36 19 2803846 2803846 + Nonsense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172775 exon4 c.T780A p.C260X . . . ZNF536 9745 broad.mit.edu 36 19 35626880 35626880 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014717 exon2 c.C571T p.R191C . . . SLC7A10 56301 broad.mit.edu 36 19 38394230 38394230 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019849 exon6 c.C842T p.T281M . . . KIAA0355 9710 broad.mit.edu 36 19 39510586 39510586 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014686 exon5 c.C917T p.P306L . . . UBA2 10054 broad.mit.edu 36 19 39649640 39649640 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005499 exon16 c.A1622T p.D541V . . . USF2 7392 broad.mit.edu 36 19 40461460 40461460 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003367 exon8 c.C747A p.D249E . . . UPK1A 11045 broad.mit.edu 36 19 40851375 40851375 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007000 exon2 c.C264T p.R88R . . . MLL4 9757 broad.mit.edu 36 19 40902759 40902759 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014727 exon3 c.C670T p.P224S . . . KIRREL2 84063 broad.mit.edu 36 19 41044698 41044698 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199180 exon11 c.G1442T p.R481M . . . CLIP3 25999 broad.mit.edu 36 19 41202006 41202006 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199570 exon7 c.G961A p.G321S . . . COX7A1 1346 broad.mit.edu 36 19 41334230 41334230 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001864 exon3 c.G161A p.R54Q . . . ZNF420 147923 broad.mit.edu 36 19 42311430 42311430 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144689 exon5 c.A1697C p.K566T . . . ZNF585A 199704 broad.mit.edu 36 19 42334750 42334750 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199126 exon6 c.G1726C p.E576Q . . . ZNF585B 92285 broad.mit.edu 36 19 42368572 42368572 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152279 exon5 c.G1707T p.Q569H . . . ZNF383 163087 broad.mit.edu 36 19 42425644 42425644 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152604 exon5 c.C666T p.G222G . . . TMIGD2 126259 broad.mit.edu 36 19 4249206 4249206 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001169126 exon2 c.G183T p.K61N . . . HKR1 284459 broad.mit.edu 36 19 42545154 42545154 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181786 exon6 c.C617T p.A206V . . . ZNF571 51276 broad.mit.edu 36 19 42748491 42748491 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016536 exon4 c.G679A p.A227T . . . RYR1 6261 broad.mit.edu 36 19 43648861 43648861 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042723 exon24 c.C3161A p.P1054H . . . LGALS4 3960 broad.mit.edu 36 19 43994930 43994930 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006149 exon2 c.G115A p.A39T . . . ECH1 1891 broad.mit.edu 36 19 43998935 43998935 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001398 exon7 c.G657T p.Q219H . . . HNRNPL 3191 broad.mit.edu 36 19 44026499 44026499 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005335 exon5 c.G397A p.E133K . . . SUPT5H 6829 broad.mit.edu 36 19 44655386 44655386 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003169 exon21 c.G2132A p.R711H . . . EID2 163126 broad.mit.edu 36 19 44722243 44722243 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153232 exon1 c.C317T p.A106V . . . AKT2 208 broad.mit.edu 36 19 45433710 45433710 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001626 exon11 c.C1102T p.R368C . . . AKT2 208 broad.mit.edu 36 19 45433777 45433777 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001626 exon11 c.C1035T p.C345C . . . SPTBN4 57731 broad.mit.edu 36 19 45690763 45690763 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020971 exon5 c.G549T p.K183N . . . CYP2A13 1553 broad.mit.edu 36 19 46288262 46288262 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000766 exon4 c.C607T p.R203C . . . CYP2F1 1572 broad.mit.edu 36 19 46318115 46318115 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000774 exon4 c.C358T p.R120X . . . CIC 23152 broad.mit.edu 36 19 47489725 47489725 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015125 exon16 c.C3937T p.R1313W . . . TICAM1 148022 broad.mit.edu 36 19 4768394 4768394 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182919 exon2 c.G996A p.T332T . . . PSG6 5675 broad.mit.edu 36 19 48112442 48112442 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031850 exon2 c.C102T p.A34A . . . PSG2 5670 broad.mit.edu 36 19 48267901 48267901 + Missense_Mutation SNP C T T rs1135795 unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031246 exon4 c.G755A p.R252H . . . ZNF229 7772 broad.mit.edu 36 19 49625343 49625343 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014518 exon6 c.G1453A p.G485S . . . CLPTM1 1209 broad.mit.edu 36 19 50185681 50185681 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001294 exon10 c.C1321T p.R441W . . . PPM1N 147699 broad.mit.edu 36 19 50695581 50695581 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080401 exon3 c.C1085A p.P362H . . . SLC1A5 6510 broad.mit.edu 36 19 51972495 51972495 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145145 exon5 c.A460G p.T154A . . . GRLF1 2909 broad.mit.edu 36 19 52114183 52114183 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004491 exon1 c.C411T p.D137D . . . MEIS3 56917 broad.mit.edu 36 19 52602196 52602196 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020160 exon10 c.G1084A p.A362T . . . EHD2 30846 broad.mit.edu 36 19 52920986 52920986 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014601 exon4 c.C608A p.A203D . . . EHD2 30846 broad.mit.edu 36 19 52936363 52936363 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014601 exon6 c.C1494T p.D498D . . . PLA2G4C 8605 broad.mit.edu 36 19 53300469 53300469 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159323 exon3 c.C53T p.A18V . . . TMEM143 55260 broad.mit.edu 36 19 53558593 53558593 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018273 exon2 c.G31T p.G11X . . . FUT2 2524 broad.mit.edu 36 19 53898264 53898264 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001097638 exon2 c.C239A p.A80D . . . FGF21 26291 broad.mit.edu 36 19 53953147 53953147 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019113 exon3 c.G488A p.R163H . . . CD37 951 broad.mit.edu 36 19 54533800 54533800 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040031 exon6 c.A275G p.D92G . . . PTH2 113091 broad.mit.edu 36 19 54617539 54617539 + Nonstop_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178449 exon2 c.T301C p.X101R . . . RCN3 57333 broad.mit.edu 36 19 54732174 54732174 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020650 exon4 c.G518A p.R173Q . . . NOSIP 51070 broad.mit.edu 36 19 54755029 54755029 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015953 exon4 c.G150A p.L50L . . . ZNF473 25888 broad.mit.edu 36 19 55241705 55241705 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006656 exon5 c.A2193G p.V731V . . . KCNC3 3748 broad.mit.edu 36 19 55518697 55518697 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004977 exon2 c.G1325A p.R442H . . . SHANK1 50944 broad.mit.edu 36 19 55893014 55893014 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016148 exon12 c.G1759A p.G587R . . . SIGLEC12 89858 broad.mit.edu 36 19 56686749 56686749 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033329 exon7 c.G1392T p.E464D . . . SIGLEC12 89858 broad.mit.edu 36 19 56695278 56695278 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033329 exon1 c.T162C p.S54S . . . TMEM146 257062 broad.mit.edu 36 19 5702780 5702780 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152784 exon12 c.C1110T p.L370L . . . ZNF616 90317 broad.mit.edu 36 19 57311813 57311813 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178523 exon4 c.A416C p.Q139P . . . ZNF578 147660 broad.mit.edu 36 19 57705651 57705651 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099694 exon6 c.C205T p.R69C . . . ZNF611 81856 broad.mit.edu 36 19 57900258 57900258 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161501 exon5 c.C1655T p.P552L . . . ZNF28 7576 broad.mit.edu 36 19 57996038 57996038 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006969 exon4 c.C872T p.A291V . . . ZNF677 342926 broad.mit.edu 36 19 58438938 58438938 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182609 exon4 c.G40A p.A14T . . . LENG1 79165 broad.mit.edu 36 19 59352400 59352400 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024316 exon3 c.A488T p.H163L . . . BRSK1 84446 broad.mit.edu 36 19 60509573 60509573 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032430 exon17 c.C2032T p.R678X . . . NLRP11 204801 broad.mit.edu 36 19 61012169 61012169 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145007 exon5 c.C1619T p.T540M . . . MLLT1 4298 broad.mit.edu 36 19 6181669 6181669 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005934 exon4 c.A332G p.N111S . . . USP29 57663 broad.mit.edu 36 19 62334405 62334405 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020903 exon4 c.G2550A p.K850K . . . ZIM3 114026 broad.mit.edu 36 19 62338944 62338944 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052882 exon5 c.T573C p.C191C . . . ZIM3 114026 broad.mit.edu 36 19 62341653 62341653 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052882 exon3 c.G141A p.V47V . . . ZNF264 9422 broad.mit.edu 36 19 62415784 62415784 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003417 exon4 c.C1507T p.R503W . . . ZNF304 57343 broad.mit.edu 36 19 62557025 62557025 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020657 exon2 c.A154G p.T52A . . . ZNF548 147694 broad.mit.edu 36 19 62603002 62603002 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152909 exon3 c.A1535G p.N512S . . . ZNF134 7693 broad.mit.edu 36 19 62824494 62824494 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003435 exon3 c.C1195T p.P399S . . . ZNF671 79891 broad.mit.edu 36 19 62924462 62924462 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024833 exon4 c.C804T p.P268P . . . ZNF256 10172 broad.mit.edu 36 19 63147183 63147183 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005773 exon2 c.C91A p.L31I . . . ZSCAN1 284312 broad.mit.edu 36 19 63256947 63256947 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182572 exon6 c.C943T p.R315C . . . GTF2F1 2962 broad.mit.edu 36 19 6331335 6331335 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002096 exon13 c.G1511A p.R504H . . . ZNF324B 388569 broad.mit.edu 36 19 63658953 63658953 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207395 exon4 c.G830A p.R277H . . . C3 718 broad.mit.edu 36 19 6628996 6628996 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000064 exon41 c.A4889G p.H1630R . . . INSR 3643 broad.mit.edu 36 19 7068292 7068292 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000208 exon22 c.G3924T p.E1308D . . . PTBP1 5725 broad.mit.edu 36 19 755922 755922 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031991 exon7 c.G700A p.A234T . . . ELAVL1 1994 broad.mit.edu 36 19 7952013 7952013 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001419 exon3 c.C230T p.A77V . . . FBN3 84467 broad.mit.edu 36 19 8067391 8067391 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032447 exon43 c.G5476T p.G1826C . . . OR2Z1 284383 broad.mit.edu 36 19 8703274 8703274 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004699 exon1 c.C884T p.P295L . . . MBD3L1 85509 broad.mit.edu 36 19 8814886 8814886 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145208 exon1 c.G532A p.A178T . . . MUC16 94025 broad.mit.edu 36 19 8935301 8935301 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.C13145A p.S4382Y . . . MUC16 94025 broad.mit.edu 36 19 8949708 8949708 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon1 c.C3107T p.A1036V . . . ZNF559 84527 broad.mit.edu 36 19 9314096 9314096 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032497 exon6 c.A969C p.K323N . . . CD97 976 broad.mit.edu 36 19 14379759 14379759 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001025160 exon18 c.2269delG p.G757fs . . . SUPT5H 6829 broad.mit.edu 36 19 44641314 44641316 + In_Frame_Del DEL TGT - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 TGT TGT Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003169 exon5 c.336_338del p.112_113del . . . CEACAM4 1089 broad.mit.edu 36 19 46825160 46825160 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001817 exon1 c.12delC p.P4fs . . . ZNF418 147686 broad.mit.edu 36 19 63131141 63131141 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_133460 exon4 c.220delG p.A74fs . . . FBXL12 54850 broad.mit.edu 36 19 9783291 9783291 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017703 exon3 c.262delC p.Q88fs . . . C19orf34 255193 broad.mit.edu 36 19 1904917 1904917 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . CEACAM16 388551 broad.mit.edu 36 19 49894542 49894542 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . TRIM17 51127 broad.mit.edu 36 1 226663401 226663402 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001134855 exon6 c.978_979insG p.G326fs . . . AGL 178 broad.mit.edu 36 1 100122328 100122328 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000645 exon16 c.G2322T p.K774N . . . COL11A1 1301 broad.mit.edu 36 1 103185056 103185056 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001854 exon42 c.T3213G p.I1071M . . . COL11A1 1301 broad.mit.edu 36 1 103242803 103242803 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001854 exon19 c.T1848C p.G616G . . . NTNG1 22854 broad.mit.edu 36 1 107668558 107668558 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001113228 exon3 c.T378C p.Y126Y . . . C1orf194 127003 broad.mit.edu 36 1 109451159 109451159 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122961 exon3 c.A271G p.T91A . . . KIAA1324 57535 broad.mit.edu 36 1 109544985 109544985 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020775 exon21 c.C2913T p.D971D . . . PSRC1 84722 broad.mit.edu 36 1 109625943 109625943 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032636 exon4 c.C340T p.R114W . . . CYB561D1 284613 broad.mit.edu 36 1 109840237 109840237 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134402 exon2 c.C352T p.L118L . . . GPR61 83873 broad.mit.edu 36 1 109887303 109887303 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031936 exon2 c.C136A p.L46I . . . AMPD2 271 broad.mit.edu 36 1 109974057 109974057 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004037 exon15 c.G2141A p.R714H . . . C1orf103 55791 broad.mit.edu 36 1 111296779 111296779 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018372 exon2 c.A250T p.I84F . . . MTOR 2475 broad.mit.edu 36 1 11225765 11225765 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004958 exon9 c.G1405A p.A469T . . . KCND3 3752 broad.mit.edu 36 1 112326386 112326386 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004980 exon2 c.G486A p.S162S . . . SLC16A1 6566 broad.mit.edu 36 1 113262021 113262021 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166496 exon4 c.G530T p.S177I . . . VANGL1 81839 broad.mit.edu 36 1 116028171 116028171 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172411 exon6 c.T1024C p.Y342H . . . PTGFRN 5738 broad.mit.edu 36 1 117293398 117293398 + Silent SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020440 exon4 c.C894A p.T298T . . . WARS2 10352 broad.mit.edu 36 1 119377102 119377102 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015836 exon6 c.A1038G p.A346A . . . PLOD1 5351 broad.mit.edu 36 1 11955584 11955584 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000302 exon18 c.T1971C p.H657H . . . HSD3B1 3283 broad.mit.edu 36 1 119851755 119851755 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000862 exon2 c.G133A p.E45K . . . NOTCH2 4853 broad.mit.edu 36 1 120284889 120284889 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024408 exon19 c.G2995T p.G999C . . . PRAMEF12 390999 broad.mit.edu 36 1 12758665 12758665 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080830 exon2 c.G680A p.G227D . . . PDE4DIP 9659 broad.mit.edu 36 1 143588414 143588414 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198832 exon31 c.C4498T p.L1500F . . . FMO5 2330 broad.mit.edu 36 1 145139611 145139611 + Silent SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001461 exon7 c.A930C p.T310T . . . BCL9 607 broad.mit.edu 36 1 145562653 145562653 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004326 exon10 c.C3550A p.P1184T . . . HIST2H2AB 317772 broad.mit.edu 36 1 148125802 148125802 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175065 exon1 c.T289C p.L97L . . . HIST2H2AB 317772 broad.mit.edu 36 1 148125984 148125984 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175065 exon1 c.G107A p.R36H . . . SV2A 9900 broad.mit.edu 36 1 148144205 148144205 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014849 exon12 c.C1896T p.S632S . . . ADAMTSL4 54507 broad.mit.edu 36 1 148797129 148797129 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019032 exon14 c.T2262G p.F754L . . . CTSS 1520 broad.mit.edu 36 1 148991017 148991017 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004079 exon5 c.C491T p.A164V . . . RORC 6097 broad.mit.edu 36 1 150054099 150054099 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001523 exon4 c.G662T p.G221V . . . TCHHL1 126637 broad.mit.edu 36 1 150324371 150324371 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008536 exon3 c.A2411G p.Y804C . . . TCHHL1 126637 broad.mit.edu 36 1 150325596 150325596 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008536 exon3 c.G1186T p.G396C . . . TCHH 7062 broad.mit.edu 36 1 150348459 150348459 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007113 exon2 c.G3858T p.W1286C . . . TCHH 7062 broad.mit.edu 36 1 150351919 150351919 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007113 exon2 c.C398T p.P133L . . . KPRP 448834 broad.mit.edu 36 1 150999084 150999084 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025231 exon2 c.C396T p.F132F . . . C1orf77 26097 broad.mit.edu 36 1 151881446 151881446 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015607 exon4 c.T320C p.I107T . . . C1orf189 388701 broad.mit.edu 36 1 152439614 152439614 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010979 exon3 c.G149T p.R50M . . . IL6R 3570 broad.mit.edu 36 1 152704259 152704259 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000565 exon10 c.G1186A p.A396T . . . ADAR 103 broad.mit.edu 36 1 152841720 152841720 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015841 exon2 c.T22A p.S8T . . . PBXIP1 57326 broad.mit.edu 36 1 153184146 153184146 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020524 exon11 c.A2174G p.H725R . . . FLAD1 80308 broad.mit.edu 36 1 153227450 153227450 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025207 exon2 c.A618G p.E206E . . . DCST1 149095 broad.mit.edu 36 1 153280704 153280704 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143687 exon6 c.C664T p.R222C . . . TRIM46 80128 broad.mit.edu 36 1 153414592 153414592 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025058 exon2 c.C170T p.A57V . . . TRIM46 80128 broad.mit.edu 36 1 153416068 153416068 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025058 exon4 c.C706A p.H236N . . . ASH1L 55870 broad.mit.edu 36 1 153652224 153652224 + Silent SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018489 exon6 c.C5943A p.P1981P . . . UBQLN4 56893 broad.mit.edu 36 1 154273537 154273537 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020131 exon11 c.G1662A p.T554T . . . IQGAP3 128239 broad.mit.edu 36 1 154790685 154790685 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178229 exon13 c.G1414T p.G472C . . . FCRL3 115352 broad.mit.edu 36 1 155917480 155917480 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052939 exon12 c.G1872A p.S624S . . . FCRL2 79368 broad.mit.edu 36 1 156003811 156003811 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030764 exon6 c.C996T p.Y332Y . . . OR10R2 343406 broad.mit.edu 36 1 156717221 156717221 + Nonsense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004472 exon1 c.T930A p.Y310X . . . OR10Z1 128368 broad.mit.edu 36 1 156843194 156843194 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004478 exon1 c.T342C p.L114L . . . MNDA 4332 broad.mit.edu 36 1 157082069 157082069 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002432 exon5 c.A639G p.T213T . . . PYHIN1 149628 broad.mit.edu 36 1 157180377 157180377 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198930 exon6 c.G1149T p.M383I . . . OR10J5 127385 broad.mit.edu 36 1 157771913 157771913 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004469 exon1 c.G509A p.G170D . . . IGSF9 57549 broad.mit.edu 36 1 158165202 158165202 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135050 exon19 c.G2600A p.G867D . . . ATP1A4 480 broad.mit.edu 36 1 158418200 158418200 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144699 exon19 c.C2839T p.R947C . . . VANGL2 57216 broad.mit.edu 36 1 158655518 158655518 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020335 exon4 c.G295A p.V99I . . . PVRL4 81607 broad.mit.edu 36 1 159310196 159310196 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030916 exon7 c.A1171G p.T391A . . . FCGR2A 2212 broad.mit.edu 36 1 159742838 159742838 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136219 exon3 c.G197A p.R66H . . . EPHA2 1969 broad.mit.edu 36 1 16332375 16332375 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004431 exon11 c.C1940T p.T647M . . . POGK 57645 broad.mit.edu 36 1 165082517 165082517 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017542 exon3 c.G177T p.E59D . . . POGK 57645 broad.mit.edu 36 1 165083409 165083409 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017542 exon4 c.C314T p.S105F . . . FMO4 2329 broad.mit.edu 36 1 169570378 169570378 + Silent SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002022 exon8 c.C1032A p.L344L . . . RC3H1 149041 broad.mit.edu 36 1 172206305 172206305 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172071 exon8 c.C1295T p.A432V . . . RABGAP1L 9910 broad.mit.edu 36 1 172511608 172511608 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014857 exon9 c.G1068T p.K356N . . . TNR 7143 broad.mit.edu 36 1 173639056 173639056 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003285 exon4 c.G819T p.K273N . . . PAPPA2 60676 broad.mit.edu 36 1 174935182 174935182 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020318 exon8 c.A3070C p.T1024P . . . PADI6 353238 broad.mit.edu 36 1 17593494 17593494 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207421 exon11 c.T1295C p.V432A . . . KIAA1614 57710 broad.mit.edu 36 1 179172088 179172088 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020950 exon5 c.C2420T p.A807V . . . KIAA1614 57710 broad.mit.edu 36 1 179181215 179181215 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020950 exon9 c.C3441T p.C1147C . . . ACTL8 81569 broad.mit.edu 36 1 18022296 18022296 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030812 exon2 c.G206A p.R69Q . . . LAMC1 3915 broad.mit.edu 36 1 181366222 181366222 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002293 exon19 c.C3401T p.A1134V . . . TAS1R2 80834 broad.mit.edu 36 1 19039499 19039499 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152232 exon6 c.C1701T p.I567I . . . TROVE2 6738 broad.mit.edu 36 1 191304842 191304842 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173524 exon2 c.A35G p.N12S . . . KIAA0090 23065 broad.mit.edu 36 1 19438907 19438907 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015047 exon8 c.T946C p.F316L . . . KCNT2 343450 broad.mit.edu 36 1 194843978 194843978 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198503 exon1 c.A85G p.N29D . . . CAMSAP1L1 23271 broad.mit.edu 36 1 199089072 199089072 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203459 exon13 c.C3649T p.R1217C . . . CACNA1S 779 broad.mit.edu 36 1 199289319 199289319 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000069 exon30 c.G3686A p.R1229H . . . CSRP1 1465 broad.mit.edu 36 1 199721034 199721034 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193572 exon5 c.G505T p.G169X . . . NAV1 89796 broad.mit.edu 36 1 200047704 200047704 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167738 exon23 c.A3821G p.H1274R . . . KDM5B 10765 broad.mit.edu 36 1 201009030 201009030 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006618 exon4 c.G415A p.E139K . . . PLA2G2E 30814 broad.mit.edu 36 1 20119486 20119486 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014589 exon4 c.G330A p.K110K . . . FMOD 2331 broad.mit.edu 36 1 201583842 201583842 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002023 exon2 c.G180A p.G60G . . . ATP2B4 493 broad.mit.edu 36 1 201943774 201943774 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001396 exon10 c.C1476T p.S492S . . . CNTN2 6900 broad.mit.edu 36 1 203307736 203307736 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005076 exon20 c.G2583A p.A861A . . . IL24 11009 broad.mit.edu 36 1 205141618 205141618 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185156 exon5 c.A463T p.S155C . . . FCAMR 83953 broad.mit.edu 36 1 205202326 205202326 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032029 exon5 c.T507C p.R169R . . . CR1 1378 broad.mit.edu 36 1 205785373 205785373 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000651 exon14 c.C2334T p.P778P . . . MUL1 79594 broad.mit.edu 36 1 20700011 20700011 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024544 exon4 c.A818G p.K273R . . . MUL1 79594 broad.mit.edu 36 1 20700297 20700297 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024544 exon4 c.C532T p.R178W . . . IRF6 3664 broad.mit.edu 36 1 208036394 208036394 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006147 exon4 c.A301G p.K101E . . . KCNK2 3776 broad.mit.edu 36 1 213409187 213409187 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017424 exon4 c.C486T p.R162R . . . USH2A 7399 broad.mit.edu 36 1 213868866 213868866 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon71 c.C15432T p.S5144S . . . USH2A 7399 broad.mit.edu 36 1 214030176 214030176 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon51 c.T10030C p.S3344P . . . USH2A 7399 broad.mit.edu 36 1 214318083 214318083 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon27 c.A5543C p.N1848T . . . IARS2 55699 broad.mit.edu 36 1 218365269 218365269 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018060 exon13 c.C1708T p.P570S . . . HLX 3142 broad.mit.edu 36 1 219124481 219124481 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021958 exon4 c.A1279G p.S427G . . . HSPG2 3339 broad.mit.edu 36 1 22086687 22086687 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005529 exon8 c.G771A p.R257R . . . AIDA 64853 broad.mit.edu 36 1 220934187 220934187 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022831 exon3 c.T222C p.S74S . . . DISP1 84976 broad.mit.edu 36 1 221245861 221245861 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032890 exon8 c.A4499G p.N1500S . . . LEFTY1 10637 broad.mit.edu 36 1 224141293 224141293 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020997 exon4 c.G858A p.P286P . . . ACTA1 58 broad.mit.edu 36 1 227635394 227635394 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100 exon2 c.C92T p.A31V . . . GALNT2 2590 broad.mit.edu 36 1 228445770 228445770 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004481 exon7 c.G703A p.E235K . . . LUZP1 7798 broad.mit.edu 36 1 23291740 23291740 + Silent SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033631 exon4 c.C1602A p.S534S . . . LYST 1130 broad.mit.edu 36 1 234007156 234007156 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000081 exon17 c.G5290T p.G1764C . . . NID1 4811 broad.mit.edu 36 1 234278685 234278685 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002508 exon2 c.C453T p.S151S . . . RYR2 6262 broad.mit.edu 36 1 235796654 235796654 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon28 c.G3379A p.E1127K . . . RYR2 6262 broad.mit.edu 36 1 235823455 235823455 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon33 c.C4332T p.G1444G . . . RYR2 6262 broad.mit.edu 36 1 235885809 235885809 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon53 c.T8031C p.P2677P . . . RYR2 6262 broad.mit.edu 36 1 236014219 236014219 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon90 c.A12584G p.D4195G . . . CEP170 9859 broad.mit.edu 36 1 241394575 241394575 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042405 exon12 c.C3016T p.R1006C . . . CEP170 9859 broad.mit.edu 36 1 241430532 241430532 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042405 exon6 c.C407T p.A136V . . . ADSS 159 broad.mit.edu 36 1 242653913 242653913 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126 exon6 c.C546T p.C182C . . . KIF26B 55083 broad.mit.edu 36 1 243597054 243597054 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018012 exon3 c.C761T p.T254I . . . TFB2M 64216 broad.mit.edu 36 1 244771118 244771118 + Silent SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022366 exon8 c.T1029A p.T343T . . . OR2L3 391192 broad.mit.edu 36 1 246291046 246291046 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004687 exon1 c.C440A p.S147Y . . . OR2M4 26245 broad.mit.edu 36 1 246469404 246469404 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017504 exon1 c.T551C p.L184P . . . OR2T33 391195 broad.mit.edu 36 1 246502811 246502811 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004695 exon1 c.A929C p.K310T . . . OR2T12 127064 broad.mit.edu 36 1 246524851 246524851 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004692 exon1 c.T653C p.L218P . . . OR2T2 401992 broad.mit.edu 36 1 246682924 246682924 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004136 exon1 c.C203T p.S68F . . . SRRM1 10250 broad.mit.edu 36 1 24848050 24848050 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005839 exon4 c.C348T p.I116I . . . TMEM57 55219 broad.mit.edu 36 1 25657604 25657604 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018202 exon6 c.C788T p.A263V . . . MAN1C1 57134 broad.mit.edu 36 1 25963019 25963019 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020379 exon7 c.G1115T p.S372I . . . SEPN1 57190 broad.mit.edu 36 1 26014734 26014734 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020451 exon13 c.G1711A p.A571T . . . C1orf38 9473 broad.mit.edu 36 1 28081974 28081974 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105556 exon4 c.T1552A p.L518M . . . RCC1 1104 broad.mit.edu 36 1 28735866 28735866 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001269 exon9 c.C958T p.R320W . . . EPB41 2035 broad.mit.edu 36 1 29257692 29257692 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203342 exon14 c.A1223G p.E408G . . . EPB41 2035 broad.mit.edu 36 1 29296964 29296964 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203342 exon17 c.G1574A p.S525N . . . PTPRU 10076 broad.mit.edu 36 1 29503111 29503111 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005704 exon17 c.G2664A p.T888T . . . BAI2 576 broad.mit.edu 36 1 31980053 31980053 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001703 exon9 c.C1520T p.T507M . . . KHDRBS1 10657 broad.mit.edu 36 1 32276223 32276223 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006559 exon6 c.A1106G p.Y369C . . . TXLNA 200081 broad.mit.edu 36 1 32428370 32428370 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175852 exon6 c.G896A p.R299H . . . TXLNA 200081 broad.mit.edu 36 1 32433305 32433305 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175852 exon11 c.G1563A p.A521A . . . TSSK3 81629 broad.mit.edu 36 1 32601807 32601807 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052841 exon2 c.G170A p.R57Q . . . S100PBP 64766 broad.mit.edu 36 1 33094179 33094179 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022753 exon7 c.C1180T p.R394X . . . PHC2 1912 broad.mit.edu 36 1 33605363 33605363 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198040 exon6 c.G917A p.G306D . . . CSMD2 114784 broad.mit.edu 36 1 33954581 33954581 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052896 exon20 c.C2989T p.R997W . . . KIAA0562 9731 broad.mit.edu 36 1 3743940 3743940 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014704 exon9 c.C895T p.R299X . . . MACF1 23499 broad.mit.edu 36 1 39595966 39595966 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012090 exon41 c.G5571A p.R1857R . . . OXCT2 64064 broad.mit.edu 36 1 40008832 40008832 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022120 exon1 c.G683A p.R228H . . . TRIT1 54802 broad.mit.edu 36 1 40088417 40088417 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017646 exon5 c.T664C p.S222P . . . CTPS 1503 broad.mit.edu 36 1 41235687 41235687 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001905 exon9 c.C907A p.L303I . . . MPL 4352 broad.mit.edu 36 1 43578384 43578384 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005373 exon5 c.G853T p.V285L . . . ELOVL1 64834 broad.mit.edu 36 1 43602599 43602599 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022821 exon7 c.A601G p.M201V . . . KIAA0467 23334 broad.mit.edu 36 1 43642700 43642700 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012961 exon4 c.C384T p.G128G . . . IPO13 9670 broad.mit.edu 36 1 44194686 44194686 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014652 exon3 c.G929A p.R310H . . . B4GALT2 8704 broad.mit.edu 36 1 44228678 44228678 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005417 exon7 c.C1090T p.R364W . . . PLK3 1263 broad.mit.edu 36 1 45041563 45041563 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004073 exon8 c.G985A p.V329M . . . MUTYH 4595 broad.mit.edu 36 1 45567679 45567679 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001048173 exon16 c.G1452A p.Q484Q . . . TESK2 10420 broad.mit.edu 36 1 45583683 45583683 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007170 exon11 c.C1132T p.R378C . . . POMGNT1 55624 broad.mit.edu 36 1 46430814 46430814 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017739 exon15 c.A1247G p.D416G . . . SLC5A9 200010 broad.mit.edu 36 1 48475994 48475994 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135181 exon12 c.G1424T p.S475I . . . TTC39A 22996 broad.mit.edu 36 1 51560034 51560034 + Silent SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144832 exon2 c.G105T p.L35L . . . ZCCHC11 23318 broad.mit.edu 36 1 52669601 52669601 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009881 exon28 c.G4383A p.Q1461Q . . . ACOT11 26027 broad.mit.edu 36 1 54830846 54830846 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147161 exon4 c.G351A p.R117R . . . NPHP4 261734 broad.mit.edu 36 1 5855949 5855949 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015102 exon23 c.G3265A p.D1089N . . . C1orf87 127795 broad.mit.edu 36 1 60228971 60228971 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152377 exon12 c.C1603A p.L535I . . . ALG6 29929 broad.mit.edu 36 1 63675120 63675120 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013339 exon15 c.G1365A p.L455L . . . DNAJC11 55735 broad.mit.edu 36 1 6663562 6663562 + Silent SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018198 exon2 c.T195G p.A65A . . . DEPDC1 55635 broad.mit.edu 36 1 68727289 68727289 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114120 exon4 c.T488A p.I163K . . . CTH 1491 broad.mit.edu 36 1 70662655 70662655 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190463 exon4 c.G460A p.V154M CTH,lung,NS,Substitution - coding silent,-2 . . C1orf173 127254 broad.mit.edu 36 1 74845127 74845127 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002912 exon10 c.C1235A p.S412Y . . . SLC44A5 204962 broad.mit.edu 36 1 75466014 75466014 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152697 exon13 c.A970C p.T324P . . . SLC44A5 204962 broad.mit.edu 36 1 75472352 75472352 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152697 exon12 c.G760A p.V254I . . . TNFRSF9 3604 broad.mit.edu 36 1 7922573 7922573 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001561 exon3 c.A69G p.S23S . . . LPHN2 23266 broad.mit.edu 36 1 82075266 82075266 + Silent SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012302 exon2 c.T9A p.S3S . . . ZNHIT6 54680 broad.mit.edu 36 1 85944565 85944565 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170670 exon4 c.G667A p.A223T . . . RPAP2 79871 broad.mit.edu 36 1 92538346 92538346 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024813 exon2 c.A81G p.K27K . . . ABCA4 24 broad.mit.edu 36 1 94349630 94349630 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000350 exon3 c.C254T p.P85L . . . SLC44A3 126969 broad.mit.edu 36 1 95065743 95065743 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114106 exon4 c.A371G p.Q124R . . . FRRS1 391059 broad.mit.edu 36 1 99947219 99947219 + Silent SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013660 exon17 c.A1704T p.G568G . . . SF3B4 10262 broad.mit.edu 36 1 148162186 148162186 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005850 exon6 c.1147delC p.H383fs . . . FCRL5 83416 broad.mit.edu 36 1 155760814 155760814 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031281 exon10 c.2118delC p.P706fs . . . PLEKHA6 22874 broad.mit.edu 36 1 202495034 202495034 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014935 exon8 c.982delG p.V328fs . . . OR2W3 343171 broad.mit.edu 36 1 246126356 246126356 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001001957 exon1 c.845delC p.T282fs . . . GBP3 2635 broad.mit.edu 36 1 89249248 89249248 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018284 exon8 c.1289delG p.G430fs . . . SLC44A3 126969 broad.mit.edu 36 1 95130520 95130520 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001114106 exon14 c.1716delT p.A572fs . . . C1orf157 284573 broad.mit.edu 36 1 202273239 202273239 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . PSMF1 9491 broad.mit.edu 36 20 1054274 1054274 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006814 exon2 c.G263T p.S88I . . . SNPH 9751 broad.mit.edu 36 20 1229257 1229257 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014723 exon5 c.G210A p.P70P . . . TASP1 55617 broad.mit.edu 36 20 13319019 13319019 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017714 exon14 c.C1251T p.S417S . . . TASP1 55617 broad.mit.edu 36 20 13487709 13487709 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017714 exon8 c.A621G p.E207E . . . RRBP1 6238 broad.mit.edu 36 20 17543477 17543477 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042576 exon25 c.G2800A p.A934T . . . PDYN 5173 broad.mit.edu 36 20 1909062 1909062 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190892 exon3 c.G672A p.K224K . . . SLC24A3 57419 broad.mit.edu 36 20 19444186 19444186 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020689 exon3 c.C326T p.A109V . . . RIN2 54453 broad.mit.edu 36 20 19904307 19904307 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018993 exon7 c.C1638T p.C546C . . . TGM3 7053 broad.mit.edu 36 20 2238899 2238899 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003245 exon3 c.C257T p.A86V . . . CD93 22918 broad.mit.edu 36 20 23013992 23013992 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012072 exon1 c.G838A p.D280N . . . CD93 22918 broad.mit.edu 36 20 23014390 23014390 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_012072 exon1 c.A440T p.D147V . . . GZF1 64412 broad.mit.edu 36 20 23293612 23293612 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022482 exon1 c.C592T p.P198S . . . GGTLC1 92086 broad.mit.edu 36 20 23914810 23914810 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178312 exon3 c.C207T p.S69S . . . SNRPB 6628 broad.mit.edu 36 20 2396273 2396273 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003091 exon2 c.T135C p.C45C . . . PYGB 5834 broad.mit.edu 36 20 25224304 25224304 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002862 exon19 c.C2377T p.R793W . . . NINL 22981 broad.mit.edu 36 20 25433550 25433550 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025176 exon6 c.G682A p.V228I . . . NRSN2 80023 broad.mit.edu 36 20 282171 282171 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024958 exon4 c.G507A p.Q169Q . . . DEFB119 245932 broad.mit.edu 36 20 29428898 29428898 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153289 exon2 c.C67T p.R23C . . . ASXL1 171023 broad.mit.edu 36 20 30482860 30482860 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015338 exon8 c.G794A p.R265H . . . C20orf112 140688 broad.mit.edu 36 20 30504950 30504950 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080616 exon5 c.C583T p.R195C . . . NCOA6 23054 broad.mit.edu 36 20 32792128 32792128 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014071 exon11 c.A5593G p.M1865V . . . EDEM2 55741 broad.mit.edu 36 20 33167325 33167325 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018217 exon11 c.C1309A p.L437I . . . CEP250 11190 broad.mit.edu 36 20 33518261 33518261 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007186 exon8 c.G549A p.E183E . . . CPNE1 8904 broad.mit.edu 36 20 33683965 33683965 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152927 exon4 c.A197G p.Y66C . . . EPB41L1 2036 broad.mit.edu 36 20 34242106 34242106 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012156 exon11 c.T1273C p.Y425H . . . C20orf118 140711 broad.mit.edu 36 20 34940887 34940887 + Silent SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080628 exon3 c.C219A p.T73T . . . ADAM33 80332 broad.mit.edu 36 20 3602770 3602770 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025220 exon8 c.C679T p.H227Y . . . TGM2 7052 broad.mit.edu 36 20 36200146 36200146 + Silent SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198951 exon10 c.C1398A p.A466A . . . SLC32A1 140679 broad.mit.edu 36 20 36790513 36790513 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080552 exon2 c.C1395T p.G465G . . . PPP1R16B 26051 broad.mit.edu 36 20 36898180 36898180 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172735 exon2 c.C198T p.F66F . . . CDC25B 994 broad.mit.edu 36 20 3729905 3729905 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004358 exon8 c.T668A p.L223H . . . CHD6 84181 broad.mit.edu 36 20 39575045 39575045 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032221 exon5 c.C706T p.R236X . . . PTPRT 11122 broad.mit.edu 36 20 40146835 40146835 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133170 exon30 c.C4094T p.T1365M . . . PTPRT 11122 broad.mit.edu 36 20 40164242 40164242 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133170 exon27 c.G3707A p.C1236Y . . . L3MBTL1 26013 broad.mit.edu 36 20 41596137 41596137 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032107 exon14 c.C1523T p.A508V . . . WFDC5 149708 broad.mit.edu 36 20 43172470 43172470 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145652 exon3 c.C352T p.R118W . . . SEMG1 6406 broad.mit.edu 36 20 43270395 43270395 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003007 exon2 c.A1043G p.Y348C . . . SNX21 90203 broad.mit.edu 36 20 43897130 43897130 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152897 exon3 c.A415G p.N139D . . . MMP9 4318 broad.mit.edu 36 20 44071055 44071055 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004994 exon1 c.T83C p.L28P . . . SLC13A3 64849 broad.mit.edu 36 20 44675579 44675579 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193339 exon2 c.G304A p.A102T . . . PREX1 57580 broad.mit.edu 36 20 46758345 46758345 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020820 exon6 c.G643A p.G215S . . . CSE1L 1434 broad.mit.edu 36 20 47116430 47116430 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001316 exon5 c.G452A p.R151H . . . DDX27 55661 broad.mit.edu 36 20 47286359 47286359 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017895 exon14 c.G1685A p.R562H . . . SLC23A2 9962 broad.mit.edu 36 20 4861125 4861125 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203327 exon3 c.G84A p.K28K . . . MC3R 4159 broad.mit.edu 36 20 54258254 54258254 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019888 exon1 c.C948T p.G316G . . . RBM38 55544 broad.mit.edu 36 20 55416115 55416115 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017495 exon4 c.G526A p.A176T . . . ZBP1 81030 broad.mit.edu 36 20 55613217 55613217 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160417 exon8 c.G1105A p.D369N . . . TH1L 51497 broad.mit.edu 36 20 56998089 56998089 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198976 exon6 c.C683T p.A228V . . . CTSZ 1522 broad.mit.edu 36 20 57010067 57010067 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001336 exon3 c.C335T p.A112V . . . C20orf177 63939 broad.mit.edu 36 20 57953068 57953068 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190826 exon5 c.G675A p.K225K . . . CHGB 1114 broad.mit.edu 36 20 5851182 5851182 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001819 exon4 c.G392A p.R131Q . . . DIDO1 11083 broad.mit.edu 36 20 61012777 61012777 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022105 exon3 c.C633T p.G211G . . . MYT1 4661 broad.mit.edu 36 20 62319025 62319025 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004535 exon11 c.G1793A p.R598H . . . C20orf54 113278 broad.mit.edu 36 20 692381 692381 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033409 exon3 c.G834A p.T278T . . . ANGPT4 51378 broad.mit.edu 36 20 808412 808412 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015985 exon6 c.G1031T p.R344L . . . PLCB1 23236 broad.mit.edu 36 20 8730728 8730728 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182734 exon32 c.C3449T p.S1150L . . . SPAG4 6676 broad.mit.edu 36 20 33672217 33672217 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003116 exon12 c.1173delC p.D391fs . . . C20orf200 253868 broad.mit.edu 36 20 60554188 60554188 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . C20orf200 253868 broad.mit.edu 36 20 60554264 60554264 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . LIPI 149998 broad.mit.edu 36 21 14476035 14476035 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198996 exon4 c.G621A p.G207G . . . USP25 29761 broad.mit.edu 36 21 16120526 16120526 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013396 exon13 c.T1437C p.S479S . . . TMPRSS15 5651 broad.mit.edu 36 21 18620703 18620703 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002772 exon16 c.C1838T p.T613I . . . NCAM2 4685 broad.mit.edu 36 21 21618650 21618650 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004540 exon6 c.C696T p.C232C . . . ADAMTS5 11096 broad.mit.edu 36 21 27224238 27224238 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007038 exon7 c.C2063G p.T688S . . . RWDD2B 10069 broad.mit.edu 36 21 29300704 29300704 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016940 exon5 c.G865A p.G289R . . . HUNK 30811 broad.mit.edu 36 21 32293209 32293209 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014586 exon11 c.G1986A p.R662R . . . C21orf63 59271 broad.mit.edu 36 21 32747504 32747504 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058187 exon2 c.A174G p.K58K . . . UMODL1 89766 broad.mit.edu 36 21 42416183 42416183 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199527 exon16 c.G3169A p.A1057T . . . TRPM2 7226 broad.mit.edu 36 21 44611067 44611067 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003307 exon4 c.C426T p.Y142Y . . . C21orf29 54084 broad.mit.edu 36 21 44771736 44771736 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144991 exon7 c.G1016T p.G339V . . . PCNT 5116 broad.mit.edu 36 21 46597636 46597636 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006031 exon10 c.G1647A p.R549R . . . OR11H1 81061 broad.mit.edu 36 22 14829126 14829126 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005239 exon1 c.C679A p.L227I . . . DGCR8 54487 broad.mit.edu 36 22 18453954 18453954 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190326 exon2 c.T468C p.S156S . . . ZNF74 7625 broad.mit.edu 36 22 19085613 19085613 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003426 exon4 c.C294T p.G98G . . . HIC2 23119 broad.mit.edu 36 22 20130926 20130926 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015094 exon3 c.G1742A p.R581H . . . PPIL2 23759 broad.mit.edu 36 22 20366780 20366780 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148176 exon8 c.G442A p.E148K . . . BCR 613 broad.mit.edu 36 22 21943759 21943759 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021574 exon6 c.C1901T p.T634M . . . BCR 613 broad.mit.edu 36 22 21957225 21957225 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021574 exon10 c.C2243T p.T748M . . . LRP5L 91355 broad.mit.edu 36 22 24083241 24083241 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135772 exon4 c.C419A p.A140D . . . GAL3ST1 9514 broad.mit.edu 36 22 29281318 29281318 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004861 exon4 c.C894T p.T298T . . . SFI1 9814 broad.mit.edu 36 22 30301354 30301354 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014775 exon10 c.C1060T p.R354C . . . DEPDC5 9681 broad.mit.edu 36 22 30569747 30569747 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014662 exon29 c.A2723G p.K908R . . . SLC5A4 6527 broad.mit.edu 36 22 30973472 30973472 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014227 exon5 c.C403T p.R135W . . . MCM5 4174 broad.mit.edu 36 22 34138651 34138652 + Missense_Mutation DNP GC TT TT novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 GC GC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006739 exon8 c.1068_1069TT . . . . RBFOX2 23543 broad.mit.edu 36 22 34470188 34470188 + Nonstop_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014309 exon12 c.A1104T p.X368C . . . MYH9 4627 broad.mit.edu 36 22 35075203 35075203 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002473 exon2 c.T25C p.Y9H . . . EIF3D 8664 broad.mit.edu 36 22 35245476 35245476 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003753 exon8 c.G633A p.T211T . . . NCF4 4689 broad.mit.edu 36 22 35601986 35601986 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013416 exon8 c.G973A p.A325T . . . DDX17 10521 broad.mit.edu 36 22 37212331 37212331 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098504 exon13 c.A1751T p.D584V . . . RPL3 6122 broad.mit.edu 36 22 38039596 38039596 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033853 exon8 c.A889G p.T297A . . . SLC25A17 10478 broad.mit.edu 36 22 39503021 39503021 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006358 exon7 c.A662G p.Y221C . . . SLC25A17 10478 broad.mit.edu 36 22 39505050 39505050 + Silent SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006358 exon5 c.T360A p.T120T . . . EP300 2033 broad.mit.edu 36 22 39875843 39875843 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001429 exon14 c.C2512T p.R838C . . . TEF 7008 broad.mit.edu 36 22 40113311 40113311 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145398 exon2 c.G78T p.K26N . . . POLR3H 171568 broad.mit.edu 36 22 40258680 40258680 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138338 exon4 c.T224C p.V75A . . . XRCC6 2547 broad.mit.edu 36 22 40382873 40382873 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001469 exon10 c.C1312T p.P438S . . . XRCC6 2547 broad.mit.edu 36 22 40389732 40389732 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001469 exon13 c.G1797A p.L599L . . . TCF20 6942 broad.mit.edu 36 22 40938859 40938859 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005650 exon1 c.T2397C p.A799A . . . MCAT 27349 broad.mit.edu 36 22 41859249 41859249 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173467 exon4 c.A917G p.Y306C . . . SAMM50 25813 broad.mit.edu 36 22 42703345 42703345 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015380 exon8 c.G726A p.A242A . . . PARVG 64098 broad.mit.edu 36 22 42933629 42933629 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001137606 exon14 c.C986G p.A329G . . . SMC1B 27127 broad.mit.edu 36 22 44168218 44168218 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148674 exon9 c.A1505G p.E502G . . . BRD1 23774 broad.mit.edu 36 22 48603354 48603354 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014577 exon1 c.G616A p.E206K . . . SELO 83642 broad.mit.edu 36 22 48991238 48991238 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031454 exon5 c.G1122A p.A374A . . . UPB1 51733 broad.mit.edu 36 22 23226213 23226213 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016327 exon2 c.243delC p.I81fs . . . TTN 7273 broad.mit.edu 36 2 179206461 179206462 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133432 exon61 c.16050_16051insA p.K5350fs . . . NMUR1 10316 broad.mit.edu 36 2 232101876 232101877 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006056 exon2 c.100_101insG p.H34fs . . . DNMT3A 1788 broad.mit.edu 36 2 25358934 25358935 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_175630 exon4 c.328_329insG p.Q110fs . . . CYP1B1 1545 broad.mit.edu 36 2 38155167 38155168 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000104 exon2 c.869_870insC p.R290fs . . . CHST10 9486 broad.mit.edu 36 2 100376468 100376468 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004854 exon7 c.A742T p.N248Y . . . RRM2 6241 broad.mit.edu 36 2 10182361 10182361 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165931 exon5 c.A682G p.M228V . . . SLC9A2 6549 broad.mit.edu 36 2 102685330 102685330 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003048 exon9 c.G1782A p.T594T . . . ODC1 4953 broad.mit.edu 36 2 10502128 10502128 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002539 exon4 c.G199A p.A67T . . . PDIA6 10130 broad.mit.edu 36 2 10848363 10848363 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005742 exon7 c.C632T p.T211M . . . CHCHD5 84269 broad.mit.edu 36 2 113060151 113060151 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032309 exon2 c.C132A p.C44X . . . DDX18 8886 broad.mit.edu 36 2 118299016 118299016 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006773 exon9 c.T1237A p.F413I . . . LPIN1 23175 broad.mit.edu 36 2 11842482 11842482 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145693 exon9 c.G1270A p.A424T . . . GLI2 2736 broad.mit.edu 36 2 121401411 121401411 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005270 exon2 c.G153A p.P51P . . . MYO7B 4648 broad.mit.edu 36 2 128052279 128052279 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080527 exon9 c.C951T p.D317D . . . SAP130 79595 broad.mit.edu 36 2 128460865 128460865 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145928 exon14 c.G2000T p.R667L . . . NCKAP5 344148 broad.mit.edu 36 2 133199796 133199796 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207481 exon17 c.G1630A p.A544T . . . YSK4 80122 broad.mit.edu 36 2 135438950 135438950 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025052 exon10 c.G3927C p.Q1309H . . . NXPH2 11249 broad.mit.edu 36 2 139145631 139145631 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007226 exon2 c.G126A p.T42T . . . ARHGAP15 55843 broad.mit.edu 36 2 143629677 143629677 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018460 exon2 c.G148A p.G50R . . . KIF5C 3800 broad.mit.edu 36 2 149543713 149543713 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004522 exon12 c.C1253T p.A418V . . . RIF1 55183 broad.mit.edu 36 2 152029861 152029861 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177664 exon30 c.A5581G p.T1861A . . . NEB 4703 broad.mit.edu 36 2 152054820 152054820 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon181 c.A25315C p.T8439P . . . CACNB4 785 broad.mit.edu 36 2 152406669 152406669 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005746 exon13 c.G1242A p.G414G . . . RPRM 56475 broad.mit.edu 36 2 154043310 154043310 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_019845 exon1 c.G16A p.G6S . . . GPD2 2820 broad.mit.edu 36 2 157133635 157133635 + Silent SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083112 exon10 c.A1218T p.T406T . . . BAZ2B 29994 broad.mit.edu 36 2 159947459 159947459 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013450 exon25 c.C3862T p.R1288C . . . FAP 2191 broad.mit.edu 36 2 162782784 162782784 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004460 exon9 c.C720T p.G240G . . . KCNH7 90134 broad.mit.edu 36 2 162999968 162999968 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173162 exon7 c.T1919A p.V640D . . . SCN3A 6328 broad.mit.edu 36 2 165705689 165705689 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006922 exon13 c.T1737G p.S579R . . . XIRP2 129446 broad.mit.edu 36 2 167809169 167809169 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.A2355C p.E785D . . . XIRP2 129446 broad.mit.edu 36 2 167815383 167815383 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.A8569G p.T2857A . . . LRP2 4036 broad.mit.edu 36 2 169738784 169738784 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon56 c.C10905T p.C3635C . . . LRP2 4036 broad.mit.edu 36 2 169746346 169746346 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon52 c.C10027T p.R3343C . . . FASTKD1 79675 broad.mit.edu 36 2 170136726 170136726 + Silent SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024622 exon2 c.T60G p.A20A . . . GAD1 2571 broad.mit.edu 36 2 171395943 171395943 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000817 exon5 c.G542A p.R181H . . . GAD1 2571 broad.mit.edu 36 2 171417492 171417492 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000817 exon13 c.C1207A p.P403T . . . RAPGEF4 11069 broad.mit.edu 36 2 173563871 173563871 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007023 exon15 c.A1462G p.N488D . . . SP3 6670 broad.mit.edu 36 2 174528610 174528610 + Silent SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172712 exon4 c.C867A p.A289A . . . TTC30A 92104 broad.mit.edu 36 2 178191229 178191229 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152275 exon1 c.A447G p.G149G . . . RBM45 129831 broad.mit.edu 36 2 178699022 178699022 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152945 exon9 c.C1298T p.A433V . . . TTN 7273 broad.mit.edu 36 2 179106061 179106061 + Silent SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon186 c.T76331A p.F25444Y . . . TTN 7273 broad.mit.edu 36 2 179120114 179120114 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon168 c.C67188T p.C22396C . . . TTN 7273 broad.mit.edu 36 2 179120266 179120266 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon168 c.C67036T p.L22346F . . . TTN 7273 broad.mit.edu 36 2 179143993 179143993 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.A47916C p.R15972S . . . TTN 7273 broad.mit.edu 36 2 179148775 179148775 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.C43134T p.G14378G . . . TTN 7273 broad.mit.edu 36 2 179174400 179174400 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon115 c.A28374G p.G9458G . . . TTN 7273 broad.mit.edu 36 2 179177067 179177067 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon110 c.A27397G p.I9133V . . . TTN 7273 broad.mit.edu 36 2 179178202 179178202 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon108 c.C26752T p.P8918S . . . TTN 7273 broad.mit.edu 36 2 179189508 179189508 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon85 c.T21060A p.S7020R . . . TTN 7273 broad.mit.edu 36 2 179224878 179224878 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon159 c.A32055G p.P10685P . . . TTN 7273 broad.mit.edu 36 2 179246672 179246672 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon147 c.G30816A p.V10272V . . . TTN 7273 broad.mit.edu 36 2 179248066 179248066 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon145 c.G30654T p.K10218N . . . TTN 7273 broad.mit.edu 36 2 179352372 179352372 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133379 exon23 c.G3792T p.K1264N . . . CCDC141 285025 broad.mit.edu 36 2 179409880 179409880 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173648 exon23 c.G4311A p.E1437E . . . MYT1L 23040 broad.mit.edu 36 2 1822099 1822099 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015025 exon21 c.C2903T p.A968V . . . NCKAP1 10787 broad.mit.edu 36 2 183596790 183596790 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013436 exon2 c.C208T p.R70C . . . ZNF804A 91752 broad.mit.edu 36 2 185509013 185509013 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194250 exon4 c.T645C p.S215S . . . NT5C1B 93034 broad.mit.edu 36 2 18628939 18628939 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033253 exon5 c.G787A p.G263S . . . COL3A1 1281 broad.mit.edu 36 2 189571285 189571285 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000090 exon28 c.G1972A p.E658K . . . ASNSD1 54529 broad.mit.edu 36 2 190240086 190240086 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019048 exon4 c.G983A p.G328E . . . ANKAR 150709 broad.mit.edu 36 2 190249579 190249579 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_144708 exon2 c.C118T p.R40W . . . MYT1L 23040 broad.mit.edu 36 2 1905671 1905671 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015025 exon10 c.G877T p.D293Y . . . STAT1 6772 broad.mit.edu 36 2 191549924 191549924 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007315 exon22 c.G1946A p.R649H . . . MATN3 4148 broad.mit.edu 36 2 20069427 20069427 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002381 exon2 c.C349T p.P117S . . . CASP8 841 broad.mit.edu 36 2 201858210 201858210 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033356 exon7 c.T1184C p.V395A . . . TRAK2 66008 broad.mit.edu 36 2 201971308 201971308 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015049 exon6 c.G495T p.Q165H . . . ALS2 57679 broad.mit.edu 36 2 202334673 202334673 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135745 exon4 c.G289T p.A97S . . . NBEAL1 65065 broad.mit.edu 36 2 203709643 203709643 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114132 exon28 c.A4379G p.D1460G . . . NRP2 8828 broad.mit.edu 36 2 206316378 206316378 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201266 exon9 c.G1498T p.G500C . . . CRYGB 1419 broad.mit.edu 36 2 208718817 208718817 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005210 exon2 c.C178T p.R60C . . . C2orf80 389073 broad.mit.edu 36 2 208745038 208745038 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099334 exon7 c.C373T p.R125X . . . IKZF2 22807 broad.mit.edu 36 2 213629960 213629960 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016260 exon4 c.C248T p.P83L . . . FN1 2335 broad.mit.edu 36 2 215943359 215943359 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_212476 exon39 c.C6213T p.G2071G . . . FN1 2335 broad.mit.edu 36 2 215948211 215948211 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_212476 exon36 c.G5585A p.R1862H . . . FN1 2335 broad.mit.edu 36 2 215952230 215952230 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_212476 exon32 c.C4947T p.S1649S . . . TNS1 7145 broad.mit.edu 36 2 218391514 218391514 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022648 exon24 c.G3474A p.P1158P . . . TNS1 7145 broad.mit.edu 36 2 218421455 218421455 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022648 exon17 c.C1655T p.P552L . . . TTLL4 9654 broad.mit.edu 36 2 219312046 219312046 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014640 exon3 c.G1403A p.R468H . . . TTLL4 9654 broad.mit.edu 36 2 219325811 219325811 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014640 exon17 c.C3058T p.R1020C . . . PRKAG3 53632 broad.mit.edu 36 2 219403041 219403041 + Silent SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017431 exon4 c.C537A p.P179P . . . EPHA4 2043 broad.mit.edu 36 2 222055564 222055564 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004438 exon5 c.G1070A p.R357H . . . PAX3 5077 broad.mit.edu 36 2 222775097 222775097 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127366 exon8 c.C1227T p.Y409Y . . . SH3YL1 26751 broad.mit.edu 36 2 224178 224178 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015677 exon5 c.C386T p.A129V . . . WDFY1 57590 broad.mit.edu 36 2 224468541 224468541 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020830 exon7 c.G649A p.G217R . . . MRPL44 65080 broad.mit.edu 36 2 224530471 224530471 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022915 exon1 c.A38G p.H13R . . . COL4A4 1286 broad.mit.edu 36 2 227624066 227624066 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000092 exon33 c.C3021T p.Y1007Y . . . COL4A4 1286 broad.mit.edu 36 2 227635515 227635515 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000092 exon26 c.C2031T p.G677G . . . COL4A4 1286 broad.mit.edu 36 2 227675754 227675754 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000092 exon15 c.C925T p.P309S . . . SPHKAP 80309 broad.mit.edu 36 2 228590741 228590741 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142644 exon7 c.T3073A p.S1025T . . . SP140 11262 broad.mit.edu 36 2 230860900 230860900 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007237 exon18 c.T1695C p.A565A . . . DGKD 8527 broad.mit.edu 36 2 234024362 234024362 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152879 exon17 c.T2094C p.S698S . . . UGT1A5 54579 broad.mit.edu 36 2 234341674 234341674 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001072 exon4 c.G1151A p.G384D . . . SH3BP4 23677 broad.mit.edu 36 2 235615871 235615871 + Silent SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014521 exon4 c.C1719A p.I573I . . . AGAP1 116987 broad.mit.edu 36 2 236371243 236371243 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037131 exon7 c.C775A p.Q259K . . . AGAP1 116987 broad.mit.edu 36 2 236456744 236456744 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037131 exon10 c.G1067A p.R356Q . . . IQCA1 79781 broad.mit.edu 36 2 236941654 236941654 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024726 exon14 c.C1591T p.R531C . . . COL6A3 1293 broad.mit.edu 36 2 237961303 237961303 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057167 exon3 c.G355A p.A119T . . . LRRFIP1 9208 broad.mit.edu 36 2 238336058 238336058 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001137552 exon11 c.T963C p.T321T . . . KIF1A 547 broad.mit.edu 36 2 241349422 241349422 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004321 exon23 c.G2135A p.R712Q . . . SNED1 25992 broad.mit.edu 36 2 241670383 241670383 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080437 exon29 c.G4052A p.R1351H . . . HDLBP 3069 broad.mit.edu 36 2 241844381 241844381 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005336 exon7 c.G764A p.R255H . . . FARP2 9855 broad.mit.edu 36 2 242063982 242063982 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014808 exon19 c.A2169G p.L723L . . . PREB 10113 broad.mit.edu 36 2 27208708 27208708 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013388 exon6 c.C820A p.L274M . . . IFT172 26160 broad.mit.edu 36 2 27557446 27557446 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015662 exon8 c.C756T p.G252G . . . C2orf16 84226 broad.mit.edu 36 2 27657255 27657255 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032266 exon1 c.G4312A p.A1438T . . . ALK 238 broad.mit.edu 36 2 29404827 29404827 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004304 exon6 c.C1307T p.A436V . . . EHD3 30845 broad.mit.edu 36 2 31337139 31337139 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014600 exon4 c.C762T p.I254I . . . XDH 7498 broad.mit.edu 36 2 31456271 31456271 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000379 exon13 c.T1208C p.I403T . . . SPAST 6683 broad.mit.edu 36 2 32194369 32194369 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199436 exon5 c.G869A p.S290N . . . NLRC4 58484 broad.mit.edu 36 2 32328437 32328437 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021209 exon4 c.G2000C p.R667P . . . LTBP1 4052 broad.mit.edu 36 2 33475853 33475853 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000627 exon29 c.G4006A p.D1336N . . . HEATR5B 54497 broad.mit.edu 36 2 37113312 37113312 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019024 exon22 c.G3325A p.A1109T . . . CEBPZ 10153 broad.mit.edu 36 2 37297038 37297038 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005760 exon7 c.C2236T p.P746S . . . DHX57 90957 broad.mit.edu 36 2 38903809 38903809 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198963 exon17 c.C3121T p.R1041X . . . SOS1 6654 broad.mit.edu 36 2 39103846 39103846 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005633 exon10 c.T1227C p.S409S . . . SLC8A1 6546 broad.mit.edu 36 2 40196034 40196034 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001112800 exon9 c.C2770T p.R924W . . . MSH6 2956 broad.mit.edu 36 2 47879996 47879996 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000179 exon4 c.C1370A p.A457D . . . MSH6 2956 broad.mit.edu 36 2 47881470 47881470 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000179 exon4 c.A2844G p.E948E . . . MSH6 2956 broad.mit.edu 36 2 47884174 47884174 + Missense_Mutation SNP G A A rs63750253 unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000179 exon5 c.G3284A p.R1095H . . . KLRAQ1 129285 broad.mit.edu 36 2 48540500 48540500 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135629 exon5 c.G479A p.G160D . . . NRXN1 9378 broad.mit.edu 36 2 50024433 50024433 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138735 exon5 c.A934G p.T312A . . . SPTBN1 6711 broad.mit.edu 36 2 54730286 54730286 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003128 exon26 c.C5233T p.R1745X . . . RTN4 57142 broad.mit.edu 36 2 55068201 55068201 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020532 exon4 c.A3151G p.T1051A . . . USP34 9736 broad.mit.edu 36 2 61270951 61270951 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014709 exon78 c.A9832G p.N3278D . . . ACTR2 10097 broad.mit.edu 36 2 65331673 65331673 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005386 exon5 c.T399C p.F133F . . . SPRED2 200734 broad.mit.edu 36 2 65394173 65394173 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181784 exon6 c.G1223T p.R408M . . . SPRED2 200734 broad.mit.edu 36 2 65394673 65394673 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181784 exon6 c.G723A p.P241P . . . GKN2 200504 broad.mit.edu 36 2 69026079 69026079 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182536 exon6 c.C480T p.V160V . . . CD207 50489 broad.mit.edu 36 2 70916171 70916171 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015717 exon2 c.C149T p.T50M . . . MPHOSPH10 10199 broad.mit.edu 36 2 71214166 71214166 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005791 exon2 c.T720C p.I240I . . . SLC4A5 57835 broad.mit.edu 36 2 74308469 74308469 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021196 exon21 c.C2892A p.G964G . . . WBP1 23559 broad.mit.edu 36 2 74540613 74540613 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012477 exon3 c.T278A p.I93N . . . LOXL3 84695 broad.mit.edu 36 2 74614560 74614560 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032603 exon13 c.C2145T p.C715C . . . GGCX 2677 broad.mit.edu 36 2 85632529 85632529 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000821 exon11 c.T1526C p.L509P . . . KIDINS220 57498 broad.mit.edu 36 2 8851486 8851486 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020738 exon12 c.G1181A p.G394E . . . RPIA 22934 broad.mit.edu 36 2 88830621 88830621 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144563 exon9 c.G847A p.D283N . . . ITGB1BP1 9270 broad.mit.edu 36 2 9471759 9471759 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022334 exon3 c.A150G p.S50S . . . ACTR1B 10120 broad.mit.edu 36 2 97642299 97642299 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005735 exon4 c.G263A p.R88H . . . LYG2 254773 broad.mit.edu 36 2 99228287 99228287 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_175735 exon4 c.T251C p.I84T . . . EIF5B 9669 broad.mit.edu 36 2 99361917 99361917 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015904 exon11 c.C1846T p.R616W . . . DNAH7 56171 broad.mit.edu 36 2 196445275 196445278 + Frame_Shift_Del DEL ACAA - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 ACAA ACAA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018897 exon40 c.6574_6577del p.2192_2193del . . . SP140 11262 broad.mit.edu 36 2 230867269 230867269 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007237 exon21 c.2008delA p.K670fs . . . ZNF638 27332 broad.mit.edu 36 2 71503607 71503607 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014497 exon22 c.3455delA p.E1152fs . . . TTC31 64427 broad.mit.edu 36 2 74571959 74571959 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022492 exon7 c.633delC p.S211fs . . . FANCD2 2177 broad.mit.edu 36 3 10081444 10081444 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033084 exon23 c.G2053A p.G685R . . . FILIP1L 11259 broad.mit.edu 36 3 101051777 101051777 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182909 exon5 c.G1433A p.R478Q . . . TFG 10342 broad.mit.edu 36 3 101950009 101950009 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006070 exon8 c.C1147T p.R383C . . . IRAK2 3656 broad.mit.edu 36 3 10255571 10255571 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001570 exon12 c.A1613T p.D538V . . . ZBTB11 27107 broad.mit.edu 36 3 102853008 102853008 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014415 exon11 c.C2854A p.L952I . . . FAM55C 91775 broad.mit.edu 36 3 103008637 103008637 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134456 exon6 c.C899T p.T300I . . . BBX 56987 broad.mit.edu 36 3 108974958 108974958 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142568 exon11 c.A1700C p.E567A . . . SLC6A11 6538 broad.mit.edu 36 3 10955004 10955004 + Silent SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014229 exon14 c.G1815T p.R605R . . . MYH15 22989 broad.mit.edu 36 3 109666251 109666251 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014981 exon16 c.C1715T p.S572L . . . SLC6A1 6529 broad.mit.edu 36 3 11051346 11051346 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003042 exon15 c.G1657A p.A553T . . . CCDC80 151887 broad.mit.edu 36 3 113841100 113841100 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199511 exon2 c.C343T p.R115C . . . ZNF80 7634 broad.mit.edu 36 3 115438030 115438030 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007136 exon1 c.C582T p.C194C . . . TIGIT 201633 broad.mit.edu 36 3 115497376 115497376 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173799 exon2 c.C356G p.T119S . . . C3orf15 89876 broad.mit.edu 36 3 120927759 120927759 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033364 exon7 c.G734A p.R245H . . . GSK3B 2932 broad.mit.edu 36 3 121114243 121114243 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002093 exon6 c.T713C p.I238T . . . GTF2E1 2960 broad.mit.edu 36 3 121982994 121982994 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005513 exon5 c.A1307G p.D436G . . . HCLS1 3059 broad.mit.edu 36 3 122835765 122835765 + Silent SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005335 exon10 c.G882T p.L294L . . . IQCB1 9657 broad.mit.edu 36 3 122983357 122983357 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001023570 exon13 c.C1333G p.R445G . . . PARP14 54625 broad.mit.edu 36 3 123901888 123901888 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017554 exon6 c.G1797A p.K599K . . . PARP14 54625 broad.mit.edu 36 3 123921801 123921801 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017554 exon15 c.C4817A p.P1606H . . . MYLK 4638 broad.mit.edu 36 3 124935304 124935304 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053025 exon10 c.A1229G p.D410G . . . KALRN 8997 broad.mit.edu 36 3 125876015 125876015 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024660 exon49 c.G7057A p.V2353I . . . OSBPL11 114885 broad.mit.edu 36 3 126753777 126753777 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022776 exon9 c.C1592T p.A531V . . . CCDC37 348807 broad.mit.edu 36 3 127635755 127635755 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182628 exon15 c.G1469A p.R490Q . . . KBTBD12 166348 broad.mit.edu 36 3 129124602 129124602 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207335 exon1 c.G8A p.C3Y . . . IQSEC1 9922 broad.mit.edu 36 3 12924980 12924980 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014869 exon12 c.A2666G p.Q889R . . . RUVBL1 8607 broad.mit.edu 36 3 129314433 129314433 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003707 exon3 c.C349T p.R117C . . . COPG 22820 broad.mit.edu 36 3 130470143 130470143 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016128 exon17 c.G1764A p.E588E . . . IFT122 55764 broad.mit.edu 36 3 130721220 130721220 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052990 exon26 c.A3261G p.S1087S . . . COL6A6 131873 broad.mit.edu 36 3 131775786 131775786 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102608 exon7 c.C3274T p.P1092S . . . PIK3R4 30849 broad.mit.edu 36 3 131917999 131917999 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014602 exon9 c.T2262C p.G754G . . . DNAJC13 23317 broad.mit.edu 36 3 133732550 133732550 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015268 exon55 c.C6544T p.R2182C . . . ACAD11 84129 broad.mit.edu 36 3 133841055 133841055 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032169 exon5 c.C673T p.L225L . . . ACAD11 84129 broad.mit.edu 36 3 133861207 133861207 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032169 exon1 c.G79A p.A27T . . . A4GNT 51146 broad.mit.edu 36 3 139326359 139326359 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016161 exon3 c.C460A p.R154S . . . PRR23B 389151 broad.mit.edu 36 3 140221677 140221677 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013650 exon1 c.G517A p.G173S . . . CLSTN2 64084 broad.mit.edu 36 3 141767677 141767677 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022131 exon17 c.C2760T p.D920D . . . SR140 23350 broad.mit.edu 36 3 144228732 144228732 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080415 exon14 c.G1326A p.G442G . . . IGSF10 285313 broad.mit.edu 36 3 152644218 152644218 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178822 exon5 c.T5207C p.V1736A . . . SH3BP5 9467 broad.mit.edu 36 3 15278725 15278725 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018009 exon5 c.A100G p.M34V . . . MBNL1 4154 broad.mit.edu 36 3 153615496 153615496 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207293 exon2 c.G251A p.R84H . . . ARHGEF26 26084 broad.mit.edu 36 3 155426347 155426347 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015595 exon11 c.G1948A p.V650I . . . ARHGEF26 26084 broad.mit.edu 36 3 155455281 155455281 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015595 exon14 c.T2451C p.R817R . . . PLCH1 23007 broad.mit.edu 36 3 156681949 156681949 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130960 exon23 c.C4584T p.G1528G . . . PLCH1 23007 broad.mit.edu 36 3 156682595 156682595 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130960 exon23 c.G3938C p.G1313A . . . PLCH1 23007 broad.mit.edu 36 3 156683452 156683452 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130960 exon23 c.C3081T p.S1027S . . . VEPH1 79674 broad.mit.edu 36 3 158695766 158695766 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167911 exon2 c.T67G p.L23V . . . SERPINI2 5276 broad.mit.edu 36 3 168665766 168665766 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006217 exon5 c.A788G p.E263G . . . TNIK 23043 broad.mit.edu 36 3 172340901 172340901 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161565 exon13 c.G1313T p.R438M . . . TBC1D5 9779 broad.mit.edu 36 3 17324620 17324620 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134380 exon14 c.C1006T p.R336W . . . NCEH1 57552 broad.mit.edu 36 3 173834404 173834404 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146276 exon5 c.A902G p.D301G . . . PIK3CA 5290 broad.mit.edu 36 3 180434779 180434779 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006218 exon21 c.A3140G p.H1047R PIK3CA,breast,NS,Substitution - Missense,0 . . KLHL24 54800 broad.mit.edu 36 3 184851131 184851131 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017644 exon3 c.A293G p.D98G . . . AP2M1 1173 broad.mit.edu 36 3 185382399 185382399 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025205 exon8 c.G827A p.R276H . . . PSMD2 5708 broad.mit.edu 36 3 185509207 185509207 + Silent SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002808 exon21 c.C2562A p.G854G . . . EIF4G1 1981 broad.mit.edu 36 3 185528329 185528329 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182917 exon25 c.G3801A p.V1267V . . . AHSG 197 broad.mit.edu 36 3 187821311 187821311 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001622 exon7 c.G1002A p.S334S . . . RTP1 132112 broad.mit.edu 36 3 188400187 188400187 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153708 exon2 c.T427A p.S143T . . . KCNH8 131096 broad.mit.edu 36 3 19364277 19364277 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144633 exon5 c.G627A p.K209K . . . OPA1 4976 broad.mit.edu 36 3 194863353 194863353 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130832 exon24 c.A2350G p.N784D . . . ATP13A3 79572 broad.mit.edu 36 3 195649040 195649040 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024524 exon13 c.T1402C p.Y468H . . . UBXN7 26043 broad.mit.edu 36 3 197573691 197573691 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015562 exon9 c.A1099G p.T367A . . . RNF168 165918 broad.mit.edu 36 3 197699917 197699917 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152617 exon2 c.A336C p.K112N . . . ZNF385D 79750 broad.mit.edu 36 3 21453637 21453637 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024697 exon5 c.G502A p.V168I . . . UBE2E1 7324 broad.mit.edu 36 3 23827966 23827966 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003341 exon3 c.A164G p.E55G . . . RPL15 6138 broad.mit.edu 36 3 23935029 23935029 + Silent SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002948 exon3 c.T267A p.V89V . . . CMC1 152100 broad.mit.edu 36 3 28279856 28279856 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182523 exon2 c.G90A p.R30R . . . CNTN4 152330 broad.mit.edu 36 3 3005071 3005071 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175613 exon5 c.T417C p.V139V . . . CHL1 10752 broad.mit.edu 36 3 344959 344959 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006614 exon5 c.T307C p.F103L . . . MLH1 4292 broad.mit.edu 36 3 37010068 37010068 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000249 exon1 c.G26A p.R9Q . . . MLH1 4292 broad.mit.edu 36 3 37064050 37064050 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000249 exon16 c.T1768A p.L590I . . . LRRFIP2 9209 broad.mit.edu 36 3 37075371 37075371 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017724 exon11 c.G821A p.R274Q . . . DLEC1 9940 broad.mit.edu 36 3 38124198 38124198 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007337 exon20 c.G2984A p.G995D . . . SCN5A 6331 broad.mit.edu 36 3 38567830 38567830 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099405 exon27 c.C4983T p.F1661F . . . LRRN1 57633 broad.mit.edu 36 3 3862626 3862626 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020873 exon2 c.G1301A p.R434H . . . TRAK1 22906 broad.mit.edu 36 3 42239538 42239538 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042646 exon16 c.T2167G p.S723A . . . ZNF445 353274 broad.mit.edu 36 3 44471677 44471677 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181489 exon3 c.C369T p.G123G . . . ZNF167 55888 broad.mit.edu 36 3 44587669 44587669 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018651 exon6 c.A2063G p.E688G . . . ZNF502 91392 broad.mit.edu 36 3 44737462 44737462 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033210 exon4 c.A149G p.Y50C . . . FYCO1 79443 broad.mit.edu 36 3 45984415 45984415 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024513 exon8 c.G1415A p.R472Q . . . ITPR1 3708 broad.mit.edu 36 3 4681902 4681902 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099952 exon17 c.G1635A p.R545R . . . PTH1R 5745 broad.mit.edu 36 3 46915813 46915813 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184744 exon9 c.C851T p.A284V . . . ITPR1 3708 broad.mit.edu 36 3 4693460 4693460 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099952 exon24 c.A2915G p.K972R . . . NBEAL2 23218 broad.mit.edu 36 3 47016443 47016443 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015175 exon27 c.T3850C p.W1284R . . . NBEAL2 23218 broad.mit.edu 36 3 47016763 47016763 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015175 exon27 c.G4170A p.S1390S . . . KLHL18 23276 broad.mit.edu 36 3 47360127 47360127 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025010 exon10 c.G1417A p.A473T . . . DHX30 22907 broad.mit.edu 36 3 47862961 47862961 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138615 exon11 c.G1395A p.T465T . . . TREX1 11277 broad.mit.edu 36 3 48481362 48481362 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130384 exon12 c.C2184T p.H728H . . . QRICH1 54870 broad.mit.edu 36 3 49044632 49044632 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198880 exon9 c.A2126G p.Y709C . . . BSN 8927 broad.mit.edu 36 3 49667977 49667977 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003458 exon5 c.A5984G p.N1995S . . . GNAT1 2779 broad.mit.edu 36 3 50205776 50205776 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000172 exon3 c.A224G p.Q75R . . . RAD54L2 23132 broad.mit.edu 36 3 51655424 51655424 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015106 exon18 c.C2913A p.S971R . . . ACY1 95 broad.mit.edu 36 3 51995336 51995336 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198897 exon6 c.A385G p.K129E . . . DNAH1 25981 broad.mit.edu 36 3 52377904 52377904 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015512 exon37 c.A5873G p.N1958S . . . PBRM1 55193 broad.mit.edu 36 3 52585646 52585646 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018313 exon23 c.A3567G p.E1189E . . . WNT5A 7474 broad.mit.edu 36 3 55479376 55479376 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003392 exon5 c.C927T p.C309C . . . APPL1 26060 broad.mit.edu 36 3 57257265 57257265 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012096 exon10 c.C709T p.R237C . . . ACOX2 8309 broad.mit.edu 36 3 58495730 58495730 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003500 exon2 c.A144G p.A48A . . . FEZF2 55079 broad.mit.edu 36 3 62330921 62330921 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018008 exon5 c.C1257T p.C419C . . . FEZF2 55079 broad.mit.edu 36 3 62332011 62332011 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018008 exon4 c.G1041A p.T347T . . . CADPS 8618 broad.mit.edu 36 3 62611679 62611679 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183393 exon5 c.C1086T p.G362G . . . ATXN7 6314 broad.mit.edu 36 3 63873917 63873917 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177387 exon3 c.G370A p.E124K . . . ROBO1 6091 broad.mit.edu 36 3 78759328 78759328 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002941 exon26 c.A3708G p.E1236E . . . ROBO1 6091 broad.mit.edu 36 3 78789097 78789097 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002941 exon18 c.G2455A p.G819S . . . HTR1F 3355 broad.mit.edu 36 3 88122650 88122650 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000866 exon2 c.C61T p.P21S . . . EPHA3 2042 broad.mit.edu 36 3 89472814 89472814 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005233 exon4 c.G873A p.P291P . . . SRGAP3 9901 broad.mit.edu 36 3 9141547 9141547 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014850 exon2 c.C122T p.S41L . . . IL17RC 84818 broad.mit.edu 36 3 9944880 9944880 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032732 exon9 c.A808G p.T270A . . . ST3GAL6 10402 broad.mit.edu 36 3 99989933 99989933 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006100 exon9 c.C692A p.P231H . . . CNTN6 27255 broad.mit.edu 36 3 1346501 1346501 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014461 exon11 c.1246delA p.K416fs . . . USP19 10869 broad.mit.edu 36 3 49129734 49129736 + In_Frame_Del DEL AGT - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 AGT AGT Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001199162 exon6 c.639_641del p.213_214del . . . LAMB2 3913 broad.mit.edu 36 3 49142311 49142313 + In_Frame_Del DEL AAG - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 AAG AAG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002292 exon10 c.1368_1370del p.456_457del . . . TRAIP 10293 broad.mit.edu 36 3 49842126 49842126 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005879 exon13 c.1164delT p.F388fs . . . DOCK3 1795 broad.mit.edu 36 3 51392644 51392644 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004947 exon52 c.5508delC p.Y1836fs . . . FAM116A 201627 broad.mit.edu 36 3 57594063 57594063 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152678 exon15 c.1322delT p.L441fs . . . ROBO2 6092 broad.mit.edu 36 3 77625192 77625192 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128929 exon4 c.716delA p.E239fs . . . METAP1 23173 broad.mit.edu 36 4 100188967 100188967 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015143 exon9 c.A848T p.N283I . . . ADH6 130 broad.mit.edu 36 4 100349024 100349024 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000672 exon6 c.G652C p.A218P . . . RG9MTD2 93587 broad.mit.edu 36 4 100689449 100689449 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134665 exon8 c.C839T p.P280L . . . RG9MTD2 93587 broad.mit.edu 36 4 100699429 100699429 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134665 exon2 c.G90A p.K30K . . . NHEDC1 150159 broad.mit.edu 36 4 104087266 104087266 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139173 exon5 c.G512T p.G171V . . . TET2 54790 broad.mit.edu 36 4 106376178 106376178 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017628 exon3 c.C1630T p.R544X . . . DKK2 27123 broad.mit.edu 36 4 108064750 108064750 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014421 exon4 c.G590A p.R197H . . . RRH 10692 broad.mit.edu 36 4 110983167 110983167 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006583 exon6 c.C814A p.P272T . . . PRSS12 8492 broad.mit.edu 36 4 119456841 119456841 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003619 exon6 c.T1236C p.C412C . . . SYNPO2 171024 broad.mit.edu 36 4 120167622 120167622 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133477 exon3 c.C650T p.A217V . . . SYNPO2 171024 broad.mit.edu 36 4 120171148 120171148 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133477 exon4 c.A1770C p.K590N . . . SYNPO2 171024 broad.mit.edu 36 4 120172044 120172044 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133477 exon4 c.A2666G p.D889G . . . MYOZ2 51778 broad.mit.edu 36 4 120291579 120291579 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016599 exon3 c.C181T p.R61C . . . BBS7 55212 broad.mit.edu 36 4 122973992 122973992 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176824 exon15 c.A1520G p.N507S . . . ANKRD50 57182 broad.mit.edu 36 4 125811943 125811943 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167882 exon3 c.G1402T p.A468S . . . FAT4 79633 broad.mit.edu 36 4 126459932 126459932 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon1 c.T2916C p.G972G . . . SLC25A31 83447 broad.mit.edu 36 4 128914080 128914080 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031291 exon6 c.C849T p.G283G . . . HSPA4L 22824 broad.mit.edu 36 4 128963464 128963464 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014278 exon15 c.C1903T p.L635L . . . HSPA4L 22824 broad.mit.edu 36 4 128973306 128973306 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014278 exon19 c.A2347T p.N783Y . . . MAEA 10296 broad.mit.edu 36 4 1299303 1299303 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017405 exon3 c.G371A p.R124H . . . BOD1L 259282 broad.mit.edu 36 4 13201127 13201127 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148894 exon14 c.C8190T p.S2730S . . . BOD1L 259282 broad.mit.edu 36 4 13215417 13215417 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148894 exon10 c.G2205A p.S735S . . . PCDH10 57575 broad.mit.edu 36 4 134291727 134291727 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032961 exon1 c.G982A p.V328M . . . PCDH18 54510 broad.mit.edu 36 4 138670336 138670336 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019035 exon1 c.A2357T p.E786V . . . CCRN4L 25819 broad.mit.edu 36 4 140185394 140185394 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012118 exon3 c.G612A p.Q204Q . . . GAB1 2549 broad.mit.edu 36 4 144609772 144609772 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207123 exon11 c.C2155T p.P719S . . . OTUD4 54726 broad.mit.edu 36 4 146287013 146287013 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102653 exon14 c.A1083T p.R361S . . . POU4F2 5458 broad.mit.edu 36 4 147780872 147780872 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004575 exon2 c.C692A p.A231E . . . FBXL5 26234 broad.mit.edu 36 4 15236666 15236666 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012161 exon9 c.G1157A p.R386Q . . . FGA 2243 broad.mit.edu 36 4 155728114 155728114 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021871 exon4 c.G510T p.E170D . . . RBM46 166863 broad.mit.edu 36 4 155939508 155939508 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144979 exon4 c.A744G p.T248T . . . GLRB 2743 broad.mit.edu 36 4 158261217 158261217 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166060 exon3 c.A182T p.N61I . . . GRIA2 2891 broad.mit.edu 36 4 158481880 158481880 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083620 exon12 c.G1718A p.R573H . . . FAM198B 51313 broad.mit.edu 36 4 159311243 159311243 + Silent SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001128424 exon2 c.T735G p.R245R . . . FNIP2 57600 broad.mit.edu 36 4 160009823 160009823 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020840 exon13 c.C2585A p.P862H . . . FAM53A 152877 broad.mit.edu 36 4 1613045 1613045 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174070 exon5 c.C988A p.L330I . . . SPOCK3 50859 broad.mit.edu 36 4 167949904 167949904 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016950 exon8 c.A710C p.E237A . . . TACC3 10460 broad.mit.edu 36 4 1694959 1694959 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006342 exon2 c.G13T p.V5F . . . MFAP3L 9848 broad.mit.edu 36 4 171149532 171149532 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021647 exon3 c.C802T p.Q268X . . . GALNTL6 442117 broad.mit.edu 36 4 172972364 172972364 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001034845 exon2 c.A58G p.I20V . . . STOX2 56977 broad.mit.edu 36 4 185167668 185167668 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020225 exon3 c.C683T p.P228L . . . HELT 391723 broad.mit.edu 36 4 186178540 186178540 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029887 exon4 c.C604T p.R202C . . . F11 2160 broad.mit.edu 36 4 187438508 187438508 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000128 exon9 c.G1003A p.A335T . . . FAT1 2195 broad.mit.edu 36 4 187776143 187776143 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005245 exon10 c.T8591C p.M2864T . . . GBA3 57733 broad.mit.edu 36 4 22358291 22358291 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020973 exon3 c.G561A p.G187G . . . PPARGC1A 10891 broad.mit.edu 36 4 23425081 23425081 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013261 exon8 c.C1123T p.R375W . . . SLC34A2 10568 broad.mit.edu 36 4 25287315 25287315 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177999 exon13 c.G1916A p.R639H . . . RFC1 5981 broad.mit.edu 36 4 38986759 38986759 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002913 exon13 c.A1777G p.T593A . . . PDS5A 23244 broad.mit.edu 36 4 39606059 39606059 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100399 exon3 c.C259T p.R87C . . . DCAF4L1 285429 broad.mit.edu 36 4 41679132 41679132 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029955 exon1 c.C566T p.A189V . . . GABRA2 2555 broad.mit.edu 36 4 45947203 45947203 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000807 exon10 c.A1235G p.N412S . . . GABRB1 2560 broad.mit.edu 36 4 47122649 47122649 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000812 exon9 c.C1282T p.R428C . . . ATP10D 57205 broad.mit.edu 36 4 47232724 47232724 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020453 exon7 c.G932A p.R311H . . . CORIN 10699 broad.mit.edu 36 4 47483683 47483683 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006587 exon3 c.C225T p.V75V . . . CNGA1 1259 broad.mit.edu 36 4 47633685 47633685 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000087 exon11 c.C1583A p.A528E . . . CNGA1 1259 broad.mit.edu 36 4 47649382 47649382 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000087 exon4 c.C94T p.R32X . . . TMEM165 55858 broad.mit.edu 36 4 55972751 55972751 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018475 exon2 c.A421G p.T141A . . . AASDH 132949 broad.mit.edu 36 4 56914508 56914508 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181806 exon9 c.G1395A p.E465E . . . EVC 2121 broad.mit.edu 36 4 5863021 5863021 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153717 exon20 c.T2837C p.L946P . . . LPHN3 23284 broad.mit.edu 36 4 62441260 62441260 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015236 exon7 c.C1568T p.A523V . . . CENPC1 1060 broad.mit.edu 36 4 68060848 68060848 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001812 exon9 c.A1479T p.E493D . . . GNRHR 2798 broad.mit.edu 36 4 68302183 68302183 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000406 exon1 c.G466A p.G156R . . . UGT2A3 79799 broad.mit.edu 36 4 69830281 69830281 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024743 exon6 c.C1423T p.R475X . . . MUC7 4589 broad.mit.edu 36 4 71381747 71381747 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152291 exon3 c.G697T p.E233X . . . ENAM 10117 broad.mit.edu 36 4 71729347 71729347 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031889 exon9 c.G3340T p.D1114Y . . . DCK 1633 broad.mit.edu 36 4 72111247 72111247 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000788 exon6 c.A667G p.T223A . . . ADAMTS3 9508 broad.mit.edu 36 4 73395680 73395680 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014243 exon14 c.G2004A p.T668T . . . ANKRD17 26057 broad.mit.edu 36 4 74233421 74233421 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198889 exon8 c.G1540T p.E514X . . . FRAS1 80144 broad.mit.edu 36 4 79527710 79527710 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025074 exon29 c.T3806G p.L1269R . . . FRAS1 80144 broad.mit.edu 36 4 79540968 79540968 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025074 exon30 c.G4032A p.G1344G . . . COQ2 27235 broad.mit.edu 36 4 84419211 84419211 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015697 exon2 c.C484T p.L162F . . . MRPS18C 51023 broad.mit.edu 36 4 84601300 84601300 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016067 exon6 c.T355G p.F119V . . . WDFY3 23001 broad.mit.edu 36 4 85861586 85861586 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014991 exon47 c.G7605T p.K2535N . . . HERC5 51191 broad.mit.edu 36 4 89609353 89609353 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016323 exon9 c.G1157T p.R386M . . . HERC3 8916 broad.mit.edu 36 4 89794283 89794283 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014606 exon7 c.A753C p.E251D . . . UNC5C 8633 broad.mit.edu 36 4 96310483 96310483 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003728 exon15 c.G2475A p.P825P . . . C4orf37 285555 broad.mit.edu 36 4 98699255 98699255 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174952 exon11 c.G1357A p.E453K . . . TSPAN5 10098 broad.mit.edu 36 4 99626952 99626952 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005723 exon3 c.G239A p.C80Y . . . TET2 54790 broad.mit.edu 36 4 106375149 106375149 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017628 exon3 c.601delA p.K201fs . . . MLF1IP 79682 broad.mit.edu 36 4 185875285 185875285 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024629 exon5 c.380delA p.K127fs . . . LIAS 11019 broad.mit.edu 36 4 39138859 39138859 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_194451 exon2 c.100delA p.K34fs . . . GABRG1 2565 broad.mit.edu 36 4 45755115 45755115 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_173536 exon7 c.792delT p.F264fs . . . CDH18 1016 broad.mit.edu 36 5 19519301 19519302 + In_Frame_Ins INS - TGC TGC novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004934 exon12 c.1748_1749insGCA p.T583delinsST . . . SLCO4C1 353189 broad.mit.edu 36 5 101655009 101655009 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_180991 exon2 c.G556A p.A186T . . . CTNND2 1501 broad.mit.edu 36 5 11076072 11076072 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001332 exon17 c.C2808A p.D936E . . . C5orf13 9315 broad.mit.edu 36 5 111094632 111094632 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142475 exon4 c.C224T p.P75L . . . APC 324 broad.mit.edu 36 5 112202510 112202510 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127511 exon14 c.C3266T p.A1089V . . . YTHDC2 64848 broad.mit.edu 36 5 112906073 112906073 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022828 exon10 c.A1469C p.H490P . . . SEMA6A 57556 broad.mit.edu 36 5 115855372 115855372 + Silent SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020796 exon7 c.A498C p.P166P . . . FTMT 94033 broad.mit.edu 36 5 121216254 121216254 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177478 exon1 c.C697T p.H233Y . . . FAM13B 51306 broad.mit.edu 36 5 137309535 137309535 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016603 exon19 c.G2229A p.R743R . . . BRD8 10902 broad.mit.edu 36 5 137534461 137534461 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006696 exon6 c.C399G p.H133Q . . . ANKHD1-EIF4EBP3 404734 broad.mit.edu 36 5 139818474 139818474 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017747 exon8 c.A1323G p.P441P . . . ANKHD1-EIF4EBP3 404734 broad.mit.edu 36 5 139885859 139885859 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017747 exon26 c.G4587A p.G1529G . . . PCDHA1 56147 broad.mit.edu 36 5 140148203 140148203 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031410 exon1 c.T2144C p.L715P . . . PCDHAC2 56134 broad.mit.edu 36 5 140326974 140326974 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018899 exon1 c.C439T p.R147C . . . PCDHB1 29930 broad.mit.edu 36 5 140411947 140411947 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013340 exon1 c.C708T p.N236N . . . PCDHB2 56133 broad.mit.edu 36 5 140456693 140456693 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018936 exon1 c.C2135T p.A712V . . . PCDHB4 56131 broad.mit.edu 36 5 140483559 140483559 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018938 exon1 c.G1795A p.A599T . . . PCDHB16 57717 broad.mit.edu 36 5 140544356 140544356 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020957 exon1 c.C2038T p.Q680X . . . PCDHB10 56126 broad.mit.edu 36 5 140554673 140554673 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018930 exon1 c.T2364A p.N788K . . . PCDHB12 56124 broad.mit.edu 36 5 140570542 140570542 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018932 exon1 c.G1879T p.A627S . . . PCDHGA2 56113 broad.mit.edu 36 5 140699714 140699714 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032009 exon1 c.C992T p.A331V . . . PCDHGB3 56102 broad.mit.edu 36 5 140731175 140731175 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018924 exon1 c.G1030A p.A344T . . . PCDHGA8 9708 broad.mit.edu 36 5 140754342 140754342 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032088 exon1 c.C1778T p.A593V . . . PCDHGB6 56100 broad.mit.edu 36 5 140769860 140769860 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018926 exon1 c.A1907G p.D636G . . . ARAP3 64411 broad.mit.edu 36 5 141031717 141031717 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022481 exon11 c.C1600A p.L534M . . . PCDH1 5097 broad.mit.edu 36 5 141225055 141225055 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032420 exon3 c.A1025G p.Q342R . . . RBM27 54439 broad.mit.edu 36 5 145590457 145590457 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018989 exon6 c.G634A p.E212K . . . TCERG1 10915 broad.mit.edu 36 5 145868959 145868959 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040006 exon20 c.A2990T p.D997V . . . DPYSL3 1809 broad.mit.edu 36 5 146765451 146765451 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001387 exon8 c.T726C p.I242I . . . FAM105B 90268 broad.mit.edu 36 5 14734686 14734686 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138348 exon4 c.G438A p.P146P . . . ABLIM3 22885 broad.mit.edu 36 5 148560166 148560166 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014945 exon5 c.A430G p.K144E . . . FAT2 2196 broad.mit.edu 36 5 150926054 150926054 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001447 exon1 c.A2632G p.T878A . . . NMUR2 56923 broad.mit.edu 36 5 151755286 151755286 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020167 exon3 c.A864G p.R288R . . . GALNT10 55568 broad.mit.edu 36 5 153689339 153689339 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198321 exon4 c.G416A p.R139H . . . GEMIN5 25929 broad.mit.edu 36 5 154295767 154295767 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015465 exon3 c.A336G p.I112M . . . C5orf40 408263 broad.mit.edu 36 5 156702781 156702781 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001343 exon2 c.G342A p.W114X . . . ATP10B 23120 broad.mit.edu 36 5 160045770 160045770 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025153 exon6 c.T364G p.L122V . . . GABRA6 2559 broad.mit.edu 36 5 161045824 161045824 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000811 exon2 c.G49A p.A17T . . . ZNF622 90441 broad.mit.edu 36 5 16518299 16518299 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033414 exon1 c.T476C p.V159A . . . DOCK2 1794 broad.mit.edu 36 5 169368179 169368179 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004946 exon31 c.A3173C p.K1058T . . . SH3PXD2B 285590 broad.mit.edu 36 5 171699392 171699392 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017995 exon13 c.C1322T p.P441L . . . ZNF346 23567 broad.mit.edu 36 5 176401407 176401407 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012279 exon3 c.T302C p.V101A . . . FGFR4 2264 broad.mit.edu 36 5 176451327 176451327 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213647 exon6 c.C639T p.S213S . . . F12 2161 broad.mit.edu 36 5 176765623 176765623 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000505 exon3 c.A161G p.H54R . . . DDX41 51428 broad.mit.edu 36 5 176875733 176875733 + De_novo_Start_OutOfFrame SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016222 exon4 c.G366T p.E122D . . . FAM153A 285596 broad.mit.edu 36 5 177096189 177096189 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173663 exon11 c.G430A p.E144K . . . ADAMTS2 9509 broad.mit.edu 36 5 178489638 178489638 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014244 exon16 c.A2358G p.K786K . . . CANX 821 broad.mit.edu 36 5 179069583 179069583 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024649 exon7 c.C632T p.T211M . . . TRIM7 81786 broad.mit.edu 36 5 180558334 180558334 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203295 exon5 c.A326C p.K109T . . . PRDM9 56979 broad.mit.edu 36 5 23553751 23553751 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020227 exon5 c.A306G p.K102K . . . PRDM9 56979 broad.mit.edu 36 5 23562244 23562244 + Silent SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020227 exon11 c.C1290A p.P430P . . . IRX2 153572 broad.mit.edu 36 5 2802864 2802864 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134222 exon2 c.G287A p.G96D . . . DROSHA 29102 broad.mit.edu 36 5 31562769 31562769 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013235 exon4 c.A28G p.M10V . . . PDZD2 23037 broad.mit.edu 36 5 32124529 32124529 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178140 exon19 c.G5218C p.D1740H . . . TTC23L 153657 broad.mit.edu 36 5 34904828 34904828 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144725 exon8 c.C902T p.A301V . . . AGXT2 64902 broad.mit.edu 36 5 35034621 35034621 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031900 exon14 c.G1505A p.R502H . . . IRX1 79192 broad.mit.edu 36 5 3652714 3652714 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024337 exon2 c.G652A p.E218K . . . NIPBL 25836 broad.mit.edu 36 5 37021020 37021020 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015384 exon10 c.T1981C p.C661R . . . C5orf42 65250 broad.mit.edu 36 5 37204766 37204766 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023073 exon34 c.C7117T p.P2373S . . . LIFR 3977 broad.mit.edu 36 5 38520720 38520720 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127671 exon18 c.A2505G p.G835G . . . FYB 2533 broad.mit.edu 36 5 39161988 39161988 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001465 exon12 c.A1914G p.T638T . . . FYB 2533 broad.mit.edu 36 5 39238314 39238314 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199335 exon2 c.C506T p.A169V . . . PLCXD3 345557 broad.mit.edu 36 5 41349618 41349618 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005473 exon3 c.C824T p.A275V . . . FBXO4 26272 broad.mit.edu 36 5 41965683 41965683 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012176 exon3 c.G553A p.G185S . . . MGC42105 167359 broad.mit.edu 36 5 43316468 43316468 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153361 exon4 c.G1191A p.K397K . . . PARP8 79668 broad.mit.edu 36 5 50126857 50126857 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178055 exon13 c.A1277G p.H426R . . . ISL1 3670 broad.mit.edu 36 5 50719278 50719278 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002202 exon3 c.C416A p.A139D . . . ISL1 3670 broad.mit.edu 36 5 50721455 50721455 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002202 exon4 c.C697T p.R233W . . . KIAA0947 23379 broad.mit.edu 36 5 5517045 5517045 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015325 exon13 c.A4598G p.Q1533R . . . MAP3K1 4214 broad.mit.edu 36 5 56206882 56206882 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005921 exon10 c.C1953T p.Y651Y . . . MIER3 166968 broad.mit.edu 36 5 56255499 56255499 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152622 exon11 c.C1049T p.T350M . . . IPO11 51194 broad.mit.edu 36 5 61768957 61768957 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134779 exon2 c.T214G p.L72V . . . HTR1A 3350 broad.mit.edu 36 5 63292264 63292264 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000524 exon1 c.C1039T p.L347L . . . MAST4 375449 broad.mit.edu 36 5 66432164 66432164 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015183 exon7 c.C491T p.S164F . . . FCHO2 115548 broad.mit.edu 36 5 72413432 72413432 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146032 exon22 c.A1948G p.T650A . . . GCNT4 51301 broad.mit.edu 36 5 74360802 74360802 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016591 exon1 c.C817T p.R273W . . . POC5 134359 broad.mit.edu 36 5 75024049 75024049 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099271 exon7 c.G723T p.K241N . . . ADCY2 108 broad.mit.edu 36 5 7762414 7762414 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020546 exon10 c.T1492G p.L498V . . . DMGDH 29958 broad.mit.edu 36 5 78364346 78364346 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013391 exon9 c.G1437A p.E479E . . . MTX3 345778 broad.mit.edu 36 5 79320771 79320771 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010891 exon4 c.C281A p.A94D . . . HAPLN1 1404 broad.mit.edu 36 5 82984172 82984172 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001884 exon3 c.G328T p.G110C . . . SEMA5A 9037 broad.mit.edu 36 5 9189619 9189619 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003966 exon13 c.T1596C p.C532C . . . TTC37 9652 broad.mit.edu 36 5 94829351 94829351 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014639 exon42 c.C4595T p.A1532V . . . RGMB 285704 broad.mit.edu 36 5 98156824 98156824 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012761 exon5 c.G904T p.V302L . . . CCDC112 153733 broad.mit.edu 36 5 114638815 114638815 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001040440 exon6 c.915delA p.K305fs . . . WWC1 23286 broad.mit.edu 36 5 167768127 167768127 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161661 exon7 c.758delG p.R253fs . . . IL6ST 3572 broad.mit.edu 36 5 55283626 55283626 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190981 exon12 c.1404delA p.K468fs . . . ANKRD55 79722 broad.mit.edu 36 5 55443323 55443323 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024669 exon10 c.1009delC p.Q337fs . . . AP3B1 8546 broad.mit.edu 36 5 77347046 77347048 + In_Frame_Del DEL CTT - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 CTT CTT Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003664 exon26 c.3073_3075del p.1025_1025del . . . LNPEP 4012 broad.mit.edu 36 5 96386023 96386023 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005575 exon15 c.2604delA p.A868fs . . . RIOK2 55781 broad.mit.edu 36 5 96532758 96532758 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018343 exon6 c.687delT p.F229fs . . . ASCC3 10973 broad.mit.edu 36 6 101160277 101160277 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006828 exon33 c.C5065T p.R1689C . . . GRIK2 2898 broad.mit.edu 36 6 102444314 102444314 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021956 exon11 c.A1631C p.K544T . . . SYCP2L 221711 broad.mit.edu 36 6 11069760 11069760 + Nonsense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040274 exon28 c.T2397A p.C799X . . . CDK19 23097 broad.mit.edu 36 6 111066549 111066549 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015076 exon5 c.A510C p.K170N . . . REV3L 5980 broad.mit.edu 36 6 111757439 111757439 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002912 exon25 c.C8230T p.P2744S . . . LAMA4 3910 broad.mit.edu 36 6 112542001 112542001 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105207 exon38 c.G5276A p.R1759K . . . LAMA4 3910 broad.mit.edu 36 6 112586771 112586771 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105207 exon14 c.C1652T p.A551V . . . NEDD9 4739 broad.mit.edu 36 6 11293494 11293494 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006403 exon7 c.G2392A p.A798T . . . TSPYL1 7259 broad.mit.edu 36 6 116706965 116706965 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003309 exon1 c.C722T p.T241I . . . RFX6 222546 broad.mit.edu 36 6 117352594 117352594 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173560 exon15 c.A1625G p.N542S . . . RFX6 222546 broad.mit.edu 36 6 117355182 117355182 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173560 exon17 c.G2185A p.A729T . . . MAN1A1 4121 broad.mit.edu 36 6 119542732 119542732 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005907 exon13 c.T1913C p.L638P . . . C6orf170 221322 broad.mit.edu 36 6 121453792 121453792 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152730 exon31 c.A3560T p.D1187V . . . ECHDC1 55862 broad.mit.edu 36 6 127652861 127652861 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002030 exon6 c.C752T p.P251L . . . PTPRK 5796 broad.mit.edu 36 6 128348599 128348599 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002844 exon22 c.T3211A p.S1071T . . . TMEM200A 114801 broad.mit.edu 36 6 130804605 130804605 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052913 exon2 c.G1345A p.A449T . . . MED23 9439 broad.mit.edu 36 6 131965114 131965114 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015979 exon18 c.G2050A p.A684T . . . GFOD1 54438 broad.mit.edu 36 6 13473313 13473313 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018988 exon2 c.G814C p.A272P . . . HBS1L 10767 broad.mit.edu 36 6 135402595 135402595 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145207 exon4 c.G239A p.R80H . . . SIRT5 23408 broad.mit.edu 36 6 13699988 13699988 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193267 exon5 c.G358A p.A120T . . . OLIG3 167826 broad.mit.edu 36 6 137856912 137856912 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_175747 exon1 c.A89G p.H30R . . . TXLNB 167838 broad.mit.edu 36 6 139606078 139606078 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153235 exon10 c.C1333T p.R445C . . . GPR126 57211 broad.mit.edu 36 6 142765555 142765555 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001032394 exon12 c.T1766C p.V589A . . . STX11 8676 broad.mit.edu 36 6 144549920 144549920 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003764 exon2 c.G463A p.D155N . . . UTRN 7402 broad.mit.edu 36 6 144824036 144824036 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007124 exon21 c.C2718T p.G906G . . . SHPRH 257218 broad.mit.edu 36 6 146249603 146249603 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042683 exon30 c.T4969A p.S1657T . . . SHPRH 257218 broad.mit.edu 36 6 146285525 146285525 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173082 exon19 c.G3698A p.C1233Y . . . ZC3H12D 340152 broad.mit.edu 36 6 149815523 149815523 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_207360 exon5 c.C709T p.R237C . . . C6orf97 80129 broad.mit.edu 36 6 151907450 151907450 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025059 exon4 c.G494A p.C165Y . . . C6orf97 80129 broad.mit.edu 36 6 151911136 151911136 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025059 exon5 c.G593A p.R198K . . . SYNE1 23345 broad.mit.edu 36 6 152514951 152514951 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015293 exon49 c.C7720A p.H2574N . . . SYNE1 23345 broad.mit.edu 36 6 152599748 152599748 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015293 exon24 c.A3668G p.Q1223R . . . SYNE1 23345 broad.mit.edu 36 6 152632097 152632097 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015293 exon14 c.G2163A p.K721K . . . SYNE1 23345 broad.mit.edu 36 6 152868142 152868142 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033071 exon9 c.C686T p.P229L . . . FOXC1 2296 broad.mit.edu 36 6 1556194 1556194 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001453 exon1 c.G515A p.R172Q . . . JARID2 3720 broad.mit.edu 36 6 15609191 15609191 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004973 exon8 c.C2020T p.L674F . . . JARID2 3720 broad.mit.edu 36 6 15620458 15620458 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004973 exon14 c.A2993G p.H998R . . . SERAC1 84947 broad.mit.edu 36 6 158484170 158484170 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032861 exon8 c.T644C p.L215P . . . TULP4 56995 broad.mit.edu 36 6 158839728 158839728 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007466 exon12 c.A1910G p.Q637R . . . SYTL3 94120 broad.mit.edu 36 6 159105578 159105578 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009991 exon17 c.T1583C p.L528P . . . ACAT2 39 broad.mit.edu 36 6 160119264 160119264 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005891 exon8 c.G985T p.A329S . . . LPA 4018 broad.mit.edu 36 6 160927474 160927474 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005577 exon26 c.G4126T p.E1376X . . . MAP3K4 4216 broad.mit.edu 36 6 161389711 161389711 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006724 exon3 c.C417A p.S139R . . . MYLIP 29116 broad.mit.edu 36 6 16253512 16253512 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013262 exon6 c.C1233T p.C411C . . . SFT2D1 113402 broad.mit.edu 36 6 166661772 166661772 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145169 exon4 c.T297C p.L99L . . . RNASET2 8635 broad.mit.edu 36 6 167264571 167264571 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003730 exon8 c.C518T p.A173V . . . KIAA0319 9856 broad.mit.edu 36 6 24672442 24672442 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168377 exon15 c.G2398A p.D800N . . . SCGN 10590 broad.mit.edu 36 6 25773198 25773198 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006998 exon4 c.C295T p.R99C . . . HIST1H4B 8366 broad.mit.edu 36 6 26135175 26135175 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003544 exon1 c.A285G p.G95G . . . HIST1H4B 8366 broad.mit.edu 36 6 26135268 26135268 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003544 exon1 c.G192A p.E64E . . . HIST1H2BF 8343 broad.mit.edu 36 6 26307869 26307869 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003522 exon1 c.A104G p.K35R . . . HIST1H4E 8367 broad.mit.edu 36 6 26312999 26312999 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003545 exon1 c.C148T p.L50F . . . HIST1H1D 3007 broad.mit.edu 36 6 26342937 26342937 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005320 exon1 c.G204A p.A68A . . . HIST1H1D 3007 broad.mit.edu 36 6 26343019 26343019 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005320 exon1 c.T122C p.V41A . . . HIST1H4F 8361 broad.mit.edu 36 6 26348802 26348802 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003540 exon1 c.G170A p.G57D . . . HIST1H2AJ 8331 broad.mit.edu 36 6 27890166 27890166 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021066 exon1 c.A332G p.N111S . . . HIST1H4L 8368 broad.mit.edu 36 6 27949018 27949018 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003546 exon1 c.G250A p.A84T . . . DUSP22 56940 broad.mit.edu 36 6 280124 280124 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020185 exon4 c.A149G p.Y50C . . . PGBD1 84547 broad.mit.edu 36 6 28377465 28377465 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184743 exon7 c.C1855T p.Q619X . . . OR10C1 442194 broad.mit.edu 36 6 29516037 29516037 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013941 exon1 c.G266A p.R89H . . . DHX16 8449 broad.mit.edu 36 6 30732182 30732182 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003587 exon15 c.C2395A p.L799M . . . KIAA1949 170954 broad.mit.edu 36 6 30761475 30761475 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134870 exon2 c.G300A p.Q100Q . . . TUBB 203068 broad.mit.edu 36 6 30799334 30799334 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178014 exon4 c.A516G p.S172S . . . BAT2 7916 broad.mit.edu 36 6 31705013 31705013 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004638 exon13 c.C1879T p.R627C . . . C6orf27 80737 broad.mit.edu 36 6 31848825 31848825 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025258 exon7 c.C972T p.G324G . . . HSPA1L 3305 broad.mit.edu 36 6 31885867 31885867 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005527 exon2 c.C1862T p.A621V . . . RXRB 6257 broad.mit.edu 36 6 33270803 33270803 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021976 exon9 c.G1351A p.A451T . . . SPDEF 25803 broad.mit.edu 36 6 34619861 34619861 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012391 exon2 c.A350G p.H117R . . . TCP11 6954 broad.mit.edu 36 6 35194226 35194226 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001093728 exon10 c.G1349A p.C450Y . . . SCUBE3 222663 broad.mit.edu 36 6 35316240 35316240 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152753 exon9 c.G1064A p.C355Y . . . MTCH1 23787 broad.mit.edu 36 6 37044716 37044716 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014341 exon12 c.C1060T p.R354X . . . MDGA1 266727 broad.mit.edu 36 6 37730651 37730651 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153487 exon5 c.G615A p.R205R . . . LRFN2 57497 broad.mit.edu 36 6 40507613 40507613 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020737 exon2 c.C1218T p.S406S . . . LRFN2 57497 broad.mit.edu 36 6 40507957 40507957 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020737 exon2 c.A874T p.T292S . . . LRFN2 57497 broad.mit.edu 36 6 40508255 40508255 + Silent SNP G C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020737 exon2 c.C576G p.T192T . . . UNC5CL 222643 broad.mit.edu 36 6 41109836 41109836 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173561 exon3 c.G448A p.A150T . . . TREML2 79865 broad.mit.edu 36 6 41273881 41273881 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024807 exon2 c.G320A p.R107H . . . FOXP4 116113 broad.mit.edu 36 6 41665551 41665551 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012426 exon10 c.C1130A p.P377H . . . PRPH2 5961 broad.mit.edu 36 6 42780303 42780303 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000322 exon2 c.G606A p.G202G . . . TBCC 6903 broad.mit.edu 36 6 42821530 42821530 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003192 exon1 c.C260A p.A87E . . . ZNF318 24149 broad.mit.edu 36 6 43416131 43416131 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014345 exon10 c.C3583T p.R1195X . . . SLC35B2 347734 broad.mit.edu 36 6 44330599 44330599 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178148 exon4 c.G1121A p.R374H . . . CYP39A1 51302 broad.mit.edu 36 6 46626110 46626110 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016593 exon12 c.C1362T p.V454V . . . GPR116 221395 broad.mit.edu 36 6 46942771 46942771 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098518 exon13 c.G1684A p.V562I . . . GPR116 221395 broad.mit.edu 36 6 46955580 46955580 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098518 exon9 c.G970A p.A324T . . . GPR115 221393 broad.mit.edu 36 6 47790264 47790264 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153838 exon6 c.T1324C p.C442R . . . TFAP2B 7021 broad.mit.edu 36 6 50913724 50913724 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003221 exon5 c.G899A p.R300H . . . MCM3 4172 broad.mit.edu 36 6 52237353 52237353 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002388 exon17 c.C2419A p.L807I . . . GSTA1 2938 broad.mit.edu 36 6 52764691 52764691 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145740 exon7 c.T593C p.L198P . . . BAG2 9532 broad.mit.edu 36 6 57156942 57156942 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004282 exon3 c.A631C p.N211H . . . KHDRBS2 202559 broad.mit.edu 36 6 62815805 62815805 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152688 exon3 c.A273G p.L91L . . . RIMS1 22999 broad.mit.edu 36 6 72735453 72735453 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014989 exon2 c.A211G p.R71G . . . RIMS1 22999 broad.mit.edu 36 6 73100259 73100259 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168407 exon20 c.G2326T p.E776X . . . RIMS1 22999 broad.mit.edu 36 6 73157137 73157137 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168409 exon18 c.A1687G p.N563D . . . KCNQ5 56479 broad.mit.edu 36 6 73843879 73843879 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160133 exon4 c.C730T p.R244C KCNQ5,large_intestine,colon,Substitution - Missense,0 . . DSP 1832 broad.mit.edu 36 6 7531018 7531018 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001008844 exon24 c.C6727T p.R2243C . . . MYO6 4646 broad.mit.edu 36 6 76659102 76659102 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004999 exon28 c.G3082A p.A1028T . . . PHIP 55023 broad.mit.edu 36 6 79732410 79732410 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017934 exon28 c.T3288C p.P1096P . . . IBTK 25998 broad.mit.edu 36 6 82984524 82984524 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015525 exon10 c.C1298T p.A433V . . . TBX18 9096 broad.mit.edu 36 6 85514493 85514493 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080508 exon5 c.C803T p.P268L . . . ZNF292 23036 broad.mit.edu 36 6 88023963 88023963 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015021 exon8 c.A3897G p.S1299S . . . RARS2 57038 broad.mit.edu 36 6 88297320 88297320 + De_novo_Start_OutOfFrame SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020320 exon9 c.G672T p.Q224H . . . RNGTT 8732 broad.mit.edu 36 6 89380811 89380811 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003800 exon15 c.A1529T p.Y510F . . . ANKRD6 22881 broad.mit.edu 36 6 90397260 90397260 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014942 exon16 c.T1985G p.L662R . . . MDN1 23195 broad.mit.edu 36 6 90438654 90438654 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014611 exon82 c.G13780A p.A4594T . . . MDN1 23195 broad.mit.edu 36 6 90478621 90478621 + Silent SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014611 exon49 c.A7506T p.A2502A . . . MDN1 23195 broad.mit.edu 36 6 90504805 90504805 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014611 exon33 c.C4684A p.L1562I . . . EPHA7 2045 broad.mit.edu 36 6 94185692 94185692 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004440 exon1 c.C89T p.A30V . . . FUT9 10690 broad.mit.edu 36 6 96758202 96758202 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006581 exon3 c.C450A p.H150Q . . . KIAA0776 23376 broad.mit.edu 36 6 97083134 97083134 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015323 exon6 c.A501G p.G167G . . . KIAA0776 23376 broad.mit.edu 36 6 97093316 97093316 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015323 exon10 c.T1067C p.V356A . . . SLC16A10 117247 broad.mit.edu 36 6 111634519 111634519 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018593 exon4 c.974delA p.E325fs . . . NOL7 51406 broad.mit.edu 36 6 13728971 13728971 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016167 exon8 c.707delA p.Q236fs . . . PLG 5340 broad.mit.edu 36 6 161054026 161054026 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000301 exon5 c.426delC p.H142fs . . . QKI 9444 broad.mit.edu 36 6 163819910 163819910 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206855 exon3 c.394delA p.K132fs . . . SLC39A7 7922 broad.mit.edu 36 6 33277015 33277015 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006979 exon1 c.15delG p.L5fs . . . TAF11 6882 broad.mit.edu 36 6 34954359 34954359 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005643 exon5 c.622delA p.I208fs . . . SMAP1 60682 broad.mit.edu 36 6 71603395 71603395 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001044305 exon7 c.607delA p.K203fs . . . HDAC2 3066 broad.mit.edu 36 6 114384552 114384552 + Splice_Site SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . PRRT1 80863 broad.mit.edu 36 6 32224974 32224974 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . EPHB4 2050 broad.mit.edu 36 7 100248434 100248434 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004444 exon12 c.C1989T p.S663S . . . SLC12A9 56996 broad.mit.edu 36 7 100301282 100301282 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020246 exon14 c.A1864G p.M622V . . . MUC17 140453 broad.mit.edu 36 7 100468817 100468817 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040105 exon3 c.C7400T p.P2467L . . . MUC17 140453 broad.mit.edu 36 7 100469877 100469877 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040105 exon3 c.G8460A p.T2820T . . . TRIM56 81844 broad.mit.edu 36 7 100519409 100519409 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030961 exon3 c.T2096C p.V699A . . . PLOD3 8985 broad.mit.edu 36 7 100646287 100646287 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001084 exon4 c.A379C p.K127Q . . . MYL10 93408 broad.mit.edu 36 7 101054228 101054228 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138403 exon2 c.G115A p.A39T . . . ARMC10 83787 broad.mit.edu 36 7 102526143 102526143 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161012 exon5 c.T657C p.H219H . . . RELN 5649 broad.mit.edu 36 7 102978906 102978906 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005045 exon41 c.C6146T p.A2049V . . . RELN 5649 broad.mit.edu 36 7 102981346 102981346 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005045 exon39 c.C5966T p.A1989V . . . MLL5 55904 broad.mit.edu 36 7 104539722 104539722 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182931 exon27 c.T4283C p.L1428P . . . SRPK2 6733 broad.mit.edu 36 7 104595089 104595089 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182691 exon5 c.A452G p.D151G . . . SRPK2 6733 broad.mit.edu 36 7 104631408 104631408 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182691 exon2 c.A99G p.P33P . . . PHF14 9678 broad.mit.edu 36 7 10989288 10989288 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014660 exon3 c.C877A p.L293I . . . PHF14 9678 broad.mit.edu 36 7 11020007 11020007 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014660 exon5 c.G1154A p.C385Y . . . LRRN3 54674 broad.mit.edu 36 7 110551392 110551392 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018334 exon2 c.A1328T p.H443L . . . LRRN3 54674 broad.mit.edu 36 7 110551518 110551518 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018334 exon2 c.G1454A p.G485D . . . TMEM168 64418 broad.mit.edu 36 7 112200162 112200162 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022484 exon4 c.G1456A p.E486K . . . FOXP2 93986 broad.mit.edu 36 7 114117081 114117081 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014491 exon17 c.T2012A p.I671N . . . CTTNBP2 83992 broad.mit.edu 36 7 117162628 117162628 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033427 exon15 c.G3619A p.E1207K . . . CTTNBP2 83992 broad.mit.edu 36 7 117219502 117219502 + Silent SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033427 exon4 c.A984T p.V328V . . . PTPRZ1 5803 broad.mit.edu 36 7 121411099 121411099 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002851 exon7 c.T764C p.I255T . . . GPR37 2861 broad.mit.edu 36 7 124191747 124191747 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005302 exon1 c.C520T p.P174S . . . POT1 25913 broad.mit.edu 36 7 124319645 124319645 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015450 exon6 c.C35T p.T12I . . . GRM8 2918 broad.mit.edu 36 7 125960883 125960883 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127323 exon9 c.G1789A p.A597T . . . GCC1 79571 broad.mit.edu 36 7 127009903 127009903 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024523 exon2 c.C1729A p.R577S . . . LEP 3952 broad.mit.edu 36 7 127679329 127679329 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000230 exon2 c.G22A p.G8R . . . FLNC 2318 broad.mit.edu 36 7 128276663 128276663 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001458 exon30 c.T4994C p.V1665A . . . FLNC 2318 broad.mit.edu 36 7 128280181 128280181 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001458 exon37 c.A6068G p.H2023R . . . FAM40B 57464 broad.mit.edu 36 7 128910094 128910094 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020704 exon20 c.G2225A p.R742H . . . PLXNA4 91584 broad.mit.edu 36 7 131842930 131842930 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181775 exon3 c.C1063A p.L355M . . . AKR1B1 231 broad.mit.edu 36 7 133784310 133784310 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001628 exon5 c.G531A p.K177K . . . WDR91 29062 broad.mit.edu 36 7 134521560 134521560 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014149 exon15 c.C2127T p.G709G . . . CNOT4 4850 broad.mit.edu 36 7 134750492 134750492 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190850 exon4 c.T432C p.N144N . . . CHRM2 1129 broad.mit.edu 36 7 136350559 136350559 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000739 exon4 c.C407T p.T136I . . . SVOPL 136306 broad.mit.edu 36 7 137931753 137931753 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174959 exon11 c.C960T p.C320C . . . ETV1 2115 broad.mit.edu 36 7 13906952 13906952 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163147 exon11 c.C1079T p.A360V . . . BRAF 673 broad.mit.edu 36 7 140099605 140099605 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004333 exon15 c.T1799A p.V600E BRAF,pituitary,NS,Substitution - Missense,0 . . BRAF 673 broad.mit.edu 36 7 140154327 140154327 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004333 exon5 c.A613C p.K205Q . . . AGK 55750 broad.mit.edu 36 7 140961794 140961794 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018238 exon8 c.T478G p.L160V . . . PRSS37 136242 broad.mit.edu 36 7 141182765 141182765 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171951 exon5 c.C604A p.Q202K . . . MGAM 8972 broad.mit.edu 36 7 141376674 141376674 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004668 exon11 c.A1265G p.D422G . . . TRPV5 56302 broad.mit.edu 36 7 142319916 142319916 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019841 exon13 c.G1642A p.D548N . . . TRPV5 56302 broad.mit.edu 36 7 142336703 142336703 + Silent SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019841 exon4 c.C429A p.V143V . . . PIP 5304 broad.mit.edu 36 7 142542436 142542436 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002652 exon2 c.C123T p.D41D . . . CASP2 835 broad.mit.edu 36 7 142701509 142701509 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032983 exon4 c.T322C p.S108P . . . ARHGEF5 7984 broad.mit.edu 36 7 143691692 143691692 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005435 exon2 c.C997T p.P333S . . . ZNF282 8427 broad.mit.edu 36 7 148526692 148526692 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003575 exon2 c.G500A p.R167Q . . . RARRES2 5919 broad.mit.edu 36 7 149667095 149667095 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002889 exon4 c.G288A p.R96R . . . GIMAP2 26157 broad.mit.edu 36 7 150020839 150020839 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015660 exon3 c.C532T p.R178X . . . ACCN3 9311 broad.mit.edu 36 7 150380460 150380460 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020321 exon10 c.C1483T p.R495X . . . UBE3C 9690 broad.mit.edu 36 7 156654512 156654512 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014671 exon3 c.C130T p.R44X . . . UBE3C 9690 broad.mit.edu 36 7 156706219 156706219 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014671 exon15 c.T1990C p.S664P . . . WDR60 55112 broad.mit.edu 36 7 158427392 158427392 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018051 exon24 c.G2794A p.G932R . . . SOSTDC1 25928 broad.mit.edu 36 7 16468861 16468861 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015464 exon2 c.G458A p.R153H . . . AHR 196 broad.mit.edu 36 7 17345150 17345150 + Silent SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001621 exon10 c.A1176C p.T392T . . . AHR 196 broad.mit.edu 36 7 17345353 17345353 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001621 exon10 c.T1379G p.M460R . . . FERD3L 222894 broad.mit.edu 36 7 19151087 19151087 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152898 exon1 c.A424G p.T142A . . . ABCB5 340273 broad.mit.edu 36 7 20734555 20734555 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178559 exon14 c.G1484A p.G495E . . . ABCB5 340273 broad.mit.edu 36 7 20761768 20761768 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178559 exon19 c.A2435G p.Q812R . . . DNAH11 8701 broad.mit.edu 36 7 21597562 21597562 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003777 exon14 c.A2509T p.I837F . . . CARD11 84433 broad.mit.edu 36 7 2943271 2943271 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032415 exon9 c.C1267T p.R423W . . . C7orf16 10842 broad.mit.edu 36 7 31703251 31703251 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006658 exon4 c.C383T p.A128V . . . PDE1C 5137 broad.mit.edu 36 7 31831008 31831008 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001191056 exon13 c.G1404A p.S468S . . . SEPT7 989 broad.mit.edu 36 7 35909282 35909282 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001788 exon12 c.T1204C p.S402P . . . GPR141 353345 broad.mit.edu 36 7 37747211 37747211 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181791 exon1 c.A691T p.I231L . . . SFRP4 6424 broad.mit.edu 36 7 37920512 37920512 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003014 exon2 c.C514T p.R172C . . . GLI3 2737 broad.mit.edu 36 7 41971652 41971652 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000168 exon15 c.C3544T p.R1182W . . . AEBP1 165 broad.mit.edu 36 7 44119976 44119976 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129 exon21 c.T3068C p.L1023P . . . ADCY1 107 broad.mit.edu 36 7 45684060 45684060 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021116 exon9 c.A1673G p.Y558C . . . ACTB 60 broad.mit.edu 36 7 5534845 5534845 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101 exon4 c.T395C p.M132T . . . ZNF479 90827 broad.mit.edu 36 7 57191967 57191967 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033273 exon5 c.C1097T p.S366L . . . AIMP2 7965 broad.mit.edu 36 7 6023993 6023993 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006303 exon3 c.T365C p.I122T . . . AIMP2 7965 broad.mit.edu 36 7 6024089 6024089 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006303 exon3 c.C461T p.T154M . . . RSPH10B 222967 broad.mit.edu 36 7 6764034 6764034 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173565 exon3 c.C201T p.N67N . . . AUTS2 26053 broad.mit.edu 36 7 69002282 69002282 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015570 exon2 c.A384G p.A128A . . . WBSCR17 64409 broad.mit.edu 36 7 70768444 70768444 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022479 exon7 c.C1193T p.A398V . . . FKBP6 8468 broad.mit.edu 36 7 72382165 72382165 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003602 exon4 c.G342A p.P114P . . . PHTF2 57157 broad.mit.edu 36 7 77407857 77407857 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020432 exon12 c.G1703A p.R568Q . . . GNAI1 2770 broad.mit.edu 36 7 79666487 79666487 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002069 exon4 c.G314A p.R105H . . . CACNA2D1 781 broad.mit.edu 36 7 81429255 81429255 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000722 exon36 c.T2857C p.F953L . . . PCLO 27445 broad.mit.edu 36 7 82419239 82419239 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033026 exon5 c.G8966A p.G2989E . . . PCLO 27445 broad.mit.edu 36 7 82422740 82422740 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033026 exon5 c.G5465T p.R1822M . . . SUN1 23353 broad.mit.edu 36 7 872152 872152 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130965 exon16 c.C1902T p.Y634Y . . . C7orf63 79846 broad.mit.edu 36 7 89739154 89739154 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160138 exon8 c.A752G p.E251G . . . AKAP9 10142 broad.mit.edu 36 7 91468818 91468818 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147185 exon8 c.A1651G p.I551V . . . KRIT1 889 broad.mit.edu 36 7 91703730 91703730 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194455 exon7 c.C418T p.R140X . . . SAMD9L 219285 broad.mit.edu 36 7 92602107 92602107 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152703 exon5 c.T1114C p.S372P . . . COL1A2 1278 broad.mit.edu 36 7 93872951 93872951 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000089 exon11 c.C517T p.L173F . . . PPP1R9A 55607 broad.mit.edu 36 7 94665695 94665695 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166163 exon5 c.A1853C p.E618A . . . PON3 5446 broad.mit.edu 36 7 94839570 94839570 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000940 exon4 c.G218A p.G73D . . . TRRAP 8295 broad.mit.edu 36 7 98401326 98401326 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003496 exon47 c.C6973T p.R2325W . . . ZKSCAN5 23660 broad.mit.edu 36 7 98966797 98966797 + Silent SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145102 exon7 c.C1509A p.G503G . . . AGFG2 3268 broad.mit.edu 36 7 99989755 99989755 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006076 exon5 c.G689A p.G230D . . . ATP6V0A4 50617 broad.mit.edu 36 7 138082828 138082828 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_130840 exon12 c.1202delT p.F401fs . . . OR2A14 135941 broad.mit.edu 36 7 143457519 143457519 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001001659 exon1 c.381delC p.H127fs . . . INTS1 26173 broad.mit.edu 36 7 1491572 1491572 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080453 exon23 c.3036delC p.P1012fs . . . ZDHHC4 55146 broad.mit.edu 36 7 6588374 6588374 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018106 exon5 c.337delT p.F113fs . . . SRCRB4D 136853 broad.mit.edu 36 7 75871568 75871570 + In_Frame_Del DEL AGG - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 AGG AGG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_080744 exon2 c.123_125del p.41_42del . . . ICA1 3382 broad.mit.edu 36 7 8164776 8164776 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004968 exon7 c.611delA p.N204fs . . . ANK1 286 broad.mit.edu 36 8 41691735 41691736 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 - - - G - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020475 exon15 c.1617_1618insC p.P539fs . . . VPS13B 157680 broad.mit.edu 36 8 100563071 100563071 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152564 exon25 c.T3735A p.N1245K . . . VPS13B 157680 broad.mit.edu 36 8 100602346 100602346 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152564 exon30 c.C4677T p.G1559G . . . DPYS 1807 broad.mit.edu 36 8 105505728 105505728 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001385 exon7 c.T1158A p.F386L . . . ZFPM2 23414 broad.mit.edu 36 8 106883286 106883286 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012082 exon8 c.C1800T p.G600G . . . TTC35 9694 broad.mit.edu 36 8 109531880 109531880 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014673 exon3 c.C202G p.R68G . . . PKHD1L1 93035 broad.mit.edu 36 8 110463935 110463935 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177531 exon4 c.A376G p.T126A . . . CSMD3 114788 broad.mit.edu 36 8 113490346 113490346 + Silent SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198123 exon33 c.T5487A p.S1829S . . . CSMD3 114788 broad.mit.edu 36 8 113574046 113574046 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198123 exon31 c.A5126G p.N1709S . . . CSMD3 114788 broad.mit.edu 36 8 113718395 113718395 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198123 exon22 c.C3542G p.P1181R . . . TRPS1 7227 broad.mit.edu 36 8 116496161 116496161 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014112 exon7 c.C3151A p.Q1051K . . . EIF3H 8667 broad.mit.edu 36 8 117728006 117728006 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003756 exon7 c.G846A p.Q282Q . . . EXT1 2131 broad.mit.edu 36 8 119192015 119192015 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000127 exon1 c.C452T p.A151V . . . COLEC10 10584 broad.mit.edu 36 8 120187264 120187264 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006438 exon6 c.G487A p.V163M . . . USP17L2 377630 broad.mit.edu 36 8 12032157 12032157 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201402 exon1 c.C1522G p.L508V . . . ATAD2 29028 broad.mit.edu 36 8 124419104 124419104 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014109 exon21 c.A2993G p.H998R . . . TRIB1 10221 broad.mit.edu 36 8 126517699 126517699 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025195 exon3 c.C923T p.S308F . . . DLC1 10395 broad.mit.edu 36 8 13401275 13401275 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182643 exon2 c.T677G p.L226R . . . FAM135B 51059 broad.mit.edu 36 8 139214168 139214168 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015912 exon20 c.G4071T p.K1357N . . . FAM135B 51059 broad.mit.edu 36 8 139233115 139233115 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015912 exon13 c.C2785T p.L929F . . . EIF2C2 27161 broad.mit.edu 36 8 141637820 141637820 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164623 exon7 c.T824C p.M275T . . . DENND3 22898 broad.mit.edu 36 8 142254664 142254664 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014957 exon14 c.T2219C p.M740T . . . GML 2765 broad.mit.edu 36 8 143919560 143919560 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002066 exon3 c.A98T p.D33V . . . CYP11B1 1584 broad.mit.edu 36 8 143958029 143958029 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001026213 exon1 c.T203C p.V68A . . . PLEC 5339 broad.mit.edu 36 8 145063066 145063066 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201383 exon32 c.A12923T p.D4308V . . . MTMR7 9108 broad.mit.edu 36 8 17272949 17272949 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004686 exon3 c.T278C p.V93A . . . MTUS1 57509 broad.mit.edu 36 8 17656854 17656854 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001925 exon2 c.A743G p.D248G . . . ASAH1 427 broad.mit.edu 36 8 17959342 17959342 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004315 exon14 c.A1217G p.D406G . . . LPL 4023 broad.mit.edu 36 8 19862765 19862765 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000237 exon8 c.T1213G p.L405V . . . PHYHIP 9796 broad.mit.edu 36 8 22141761 22141761 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014759 exon2 c.T55C p.S19P . . . POLR3D 661 broad.mit.edu 36 8 22161394 22161394 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001722 exon4 c.C289T p.R97X . . . EGR3 1960 broad.mit.edu 36 8 22604038 22604038 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004430 exon2 c.A1057G p.K353E . . . ENTPD4 9583 broad.mit.edu 36 8 23353237 23353237 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004901 exon9 c.G1019A p.R340K . . . ADAM7 8756 broad.mit.edu 36 8 24400592 24400592 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003817 exon11 c.T963C p.D321D . . . DOCK5 80005 broad.mit.edu 36 8 25309081 25309081 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024940 exon45 c.C4633T p.H1545Y . . . ADRA1A 148 broad.mit.edu 36 8 26778068 26778068 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033302 exon1 c.G336A p.A112A . . . SCARA3 51435 broad.mit.edu 36 8 27584400 27584400 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016240 exon6 c.C1434T p.G478G . . . SCARA5 286133 broad.mit.edu 36 8 27820595 27820595 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173833 exon6 c.G1085A p.R362H . . . CSMD1 64478 broad.mit.edu 36 8 2843078 2843078 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon54 c.G8240T p.R2747L . . . EXTL3 2137 broad.mit.edu 36 8 28629746 28629746 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001440 exon3 c.G251A p.R84H . . . TEX15 56154 broad.mit.edu 36 8 30814670 30814670 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031271 exon3 c.C7523T p.A2508V . . . PURG 29942 broad.mit.edu 36 8 30973661 30973661 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001015508 exon2 c.T959A p.V320D . . . MAK16 84549 broad.mit.edu 36 8 33466195 33466195 + Silent SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032509 exon5 c.C388A p.R130R . . . KCNU1 157855 broad.mit.edu 36 8 36882445 36882445 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031836 exon20 c.T2071C p.W691R . . . DDHD2 23259 broad.mit.edu 36 8 38214826 38214826 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164232 exon5 c.G564T p.Q188H . . . FGFR1 2260 broad.mit.edu 36 8 38405021 38405021 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174066 exon3 c.C181T p.P61S . . . ADAM32 203102 broad.mit.edu 36 8 39198345 39198345 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145004 exon13 c.A1293T p.K431N . . . ADAM18 8749 broad.mit.edu 36 8 39561987 39561987 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190956 exon2 c.C91T p.R31W . . . ADAM18 8749 broad.mit.edu 36 8 39585725 39585725 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190956 exon4 c.T196G p.L66V . . . MYST3 7994 broad.mit.edu 36 8 41909831 41909831 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099413 exon18 c.G5064A p.Q1688Q . . . DKK4 27121 broad.mit.edu 36 8 42350830 42350830 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014420 exon4 c.C620T p.T207I . . . HOOK3 84376 broad.mit.edu 36 8 42938754 42938754 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032410 exon9 c.G759A p.Q253Q . . . CSMD1 64478 broad.mit.edu 36 8 4482396 4482396 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon2 c.T178A p.W60R . . . PRKDC 5591 broad.mit.edu 36 8 48924349 48924349 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081640 exon54 c.T7198C p.W2400R . . . PXDNL 137902 broad.mit.edu 36 8 52547380 52547380 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144651 exon8 c.G732A p.E244E . . . CA8 767 broad.mit.edu 36 8 61341141 61341141 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004056 exon3 c.C314A p.P105H . . . ASPH 444 broad.mit.edu 36 8 62637911 62637911 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004318 exon18 c.C1383T p.G461G . . . ANGPT2 285 broad.mit.edu 36 8 6407659 6407659 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001118888 exon1 c.G205A p.A69T . . . TTPA 7274 broad.mit.edu 36 8 64141018 64141018 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000370 exon3 c.C551T p.T184M . . . DNAJC5B 85479 broad.mit.edu 36 8 67126379 67126379 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033105 exon3 c.A43G p.T15A . . . MSC 9242 broad.mit.edu 36 8 72917489 72917489 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005098 exon2 c.A582C p.E194D . . . JPH1 56704 broad.mit.edu 36 8 75319588 75319588 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020647 exon4 c.G1635T p.E545D . . . ZFHX4 79776 broad.mit.edu 36 8 77781295 77781295 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024721 exon2 c.A2417C p.Q806P . . . ZFHX4 79776 broad.mit.edu 36 8 77926450 77926450 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024721 exon10 c.G4738A p.V1580I . . . TPD52 7163 broad.mit.edu 36 8 81113005 81113005 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025252 exon6 c.G576A p.K192K . . . RALYL 138046 broad.mit.edu 36 8 85937183 85937183 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100392 exon7 c.G511T p.G171X . . . ATP6V0D2 245972 broad.mit.edu 36 8 87180405 87180405 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152565 exon1 c.C82A p.L28M . . . WWP1 11059 broad.mit.edu 36 8 87462859 87462859 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007013 exon5 c.G219A p.T73T . . . CNGB3 54714 broad.mit.edu 36 8 87748406 87748406 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019098 exon6 c.C715T p.R239C . . . TMEM55A 55529 broad.mit.edu 36 8 92102733 92102733 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018710 exon2 c.G182A p.C61Y . . . RBM12B 389677 broad.mit.edu 36 8 94815639 94815639 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203390 exon3 c.C2176A p.P726T . . . RBM12B 389677 broad.mit.edu 36 8 94816419 94816419 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203390 exon3 c.C1396T p.L466L . . . CDH17 1015 broad.mit.edu 36 8 95212341 95212341 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001144663 exon16 c.C2223T p.V741V . . . GDF6 392255 broad.mit.edu 36 8 97226101 97226101 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001557 exon2 c.C1234T p.P412S . . . PTDSS1 9791 broad.mit.edu 36 8 97343485 97343485 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014754 exon1 c.A41G p.D14G . . . PGCP 10404 broad.mit.edu 36 8 97866320 97866320 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016134 exon2 c.G19A p.A7T . . . POP1 10940 broad.mit.edu 36 8 99232011 99232011 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145860 exon14 c.G2025A p.E675E POP1,breast,NS,Substitution - Missense,+2 . . STK3 6788 broad.mit.edu 36 8 99629510 99629510 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006281 exon9 c.G1004A p.G335D . . . CNOT7 29883 broad.mit.edu 36 8 17139190 17139190 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013354 exon4 c.375delA p.K125fs . . . INTS8 55656 broad.mit.edu 36 8 95961597 95961597 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017864 exon27 c.2947delA p.K983fs . . . GALNT12 79695 broad.mit.edu 36 9 100646285 100646285 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024642 exon8 c.C1431T p.Y477Y . . . INVS 27130 broad.mit.edu 36 9 102094696 102094696 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014425 exon14 c.G2336A p.R779Q . . . DMRT2 10655 broad.mit.edu 36 9 1046222 1046222 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181872 exon4 c.G635A p.R212H . . . TAL2 6887 broad.mit.edu 36 9 107464814 107464814 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005421 exon1 c.G216A p.G72G . . . ZNF462 58499 broad.mit.edu 36 9 108730385 108730385 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021224 exon3 c.G4371A p.Q1457Q . . . ACTL7A 10881 broad.mit.edu 36 9 110664716 110664716 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006687 exon1 c.C293T p.T98M . . . SVEP1 79987 broad.mit.edu 36 9 112203105 112203105 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153366 exon40 c.T9672C p.D3224D . . . C9orf84 158401 broad.mit.edu 36 9 113516626 113516626 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173521 exon15 c.A2143G p.K715E . . . ALAD 210 broad.mit.edu 36 9 115191112 115191112 + Silent SNP G C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000031 exon11 c.C897G p.A299A . . . COL27A1 85301 broad.mit.edu 36 9 116067056 116067056 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032888 exon30 c.G3281A p.R1094Q . . . DFNB31 25861 broad.mit.edu 36 9 116226520 116226520 + Missense_Mutation SNP T C C rs45530335 unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015404 exon6 c.A1331G p.Y444C . . . DFNB31 25861 broad.mit.edu 36 9 116226623 116226623 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015404 exon6 c.G1228A p.G410S . . . TNC 3371 broad.mit.edu 36 9 116850424 116850424 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002160 exon16 c.G4788T p.E1596D . . . TRIM32 22954 broad.mit.edu 36 9 118500237 118500237 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099679 exon2 c.G395A p.G132D . . . MEGF9 1955 broad.mit.edu 36 9 122424831 122424831 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080497 exon3 c.T827C p.V276A . . . MORN5 254956 broad.mit.edu 36 9 123976651 123976651 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198469 exon4 c.C363T p.Y121Y . . . ZBTB26 57684 broad.mit.edu 36 9 124721679 124721679 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020924 exon2 c.G356A p.C119Y . . . OLFML2A 169611 broad.mit.edu 36 9 126610042 126610042 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182487 exon7 c.C1330T p.R444C . . . GARNL3 84253 broad.mit.edu 36 9 129138260 129138260 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032293 exon11 c.C906T p.I302I . . . GARNL3 84253 broad.mit.edu 36 9 129157435 129157435 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032293 exon20 c.G1798T p.E600X . . . STXBP1 6812 broad.mit.edu 36 9 129470274 129470274 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003165 exon10 c.G889A p.A297T . . . CIZ1 25792 broad.mit.edu 36 9 129980573 129980573 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001131015 exon10 c.C1348T p.P450S . . . DNM1 1759 broad.mit.edu 36 9 130020766 130020766 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005336 exon3 c.G320A p.R107K . . . DNM1 1759 broad.mit.edu 36 9 130044370 130044370 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005336 exon14 c.C1595T p.A532V . . . C9orf114 51490 broad.mit.edu 36 9 130629222 130629222 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016390 exon4 c.G278A p.R93H . . . ABL1 25 broad.mit.edu 36 9 132749227 132749227 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005157 exon11 c.C1729T p.R577X . . . LAMC3 10319 broad.mit.edu 36 9 132910794 132910794 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006059 exon8 c.G1445A p.C482Y . . . NUP214 8021 broad.mit.edu 36 9 133029085 133029085 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005085 exon20 c.A2731G p.S911G . . . POMT1 10585 broad.mit.edu 36 9 133375505 133375505 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007171 exon9 c.C803A p.A268D . . . BARHL1 56751 broad.mit.edu 36 9 134454494 134454494 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020064 exon3 c.T748C p.Y250H . . . GTF3C5 9328 broad.mit.edu 36 9 134907418 134907418 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122823 exon2 c.A277G p.R93G . . . REXO4 57109 broad.mit.edu 36 9 135267836 135267836 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020385 exon3 c.A599G p.D200G . . . ADAMTS13 11093 broad.mit.edu 36 9 135295303 135295303 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139025 exon16 c.C1804T p.R602C . . . COL5A1 1289 broad.mit.edu 36 9 136857545 136857545 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000093 exon63 c.G5041A p.V1681I . . . MRPS2 51116 broad.mit.edu 36 9 137535415 137535415 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016034 exon4 c.G506A p.R169H . . . CAMSAP1 157922 broad.mit.edu 36 9 137852896 137852896 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015447 exon11 c.G3432A p.T1144T . . . CAMSAP1 157922 broad.mit.edu 36 9 137853481 137853481 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015447 exon11 c.C2847T p.D949D . . . CAMSAP1 157922 broad.mit.edu 36 9 137853933 137853933 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015447 exon11 c.G2395T p.A799S . . . UBAC1 10422 broad.mit.edu 36 9 137977991 137977991 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016172 exon5 c.G489A p.A163A . . . SEC16A 9919 broad.mit.edu 36 9 138470024 138470024 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014866 exon20 c.C5707T p.Q1903X . . . SEC16A 9919 broad.mit.edu 36 9 138491220 138491220 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014866 exon3 c.G669A p.Q223Q . . . TRAF2 7186 broad.mit.edu 36 9 138922425 138922425 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021138 exon5 c.G449A p.R150H . . . COBRA1 25920 broad.mit.edu 36 9 139270680 139270680 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015456 exon3 c.C345T p.C115C . . . EHMT1 79813 broad.mit.edu 36 9 139828711 139828711 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024757 exon22 c.T3188C p.V1063A . . . ADAMTSL1 92949 broad.mit.edu 36 9 18665872 18665872 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052866 exon10 c.T1103G p.I368S . . . FAM154A 158297 broad.mit.edu 36 9 18940922 18940922 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153707 exon2 c.C52T p.P18S . . . IFNA16 3449 broad.mit.edu 36 9 21206970 21206970 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002173 exon1 c.T335G p.L112R . . . ELAVL2 1993 broad.mit.edu 36 9 23682803 23682803 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171197 exon6 c.A793T p.I265L . . . KCNV2 169522 broad.mit.edu 36 9 2708013 2708013 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133497 exon1 c.C274T p.P92S . . . FANCG 2189 broad.mit.edu 36 9 35066007 35066007 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004629 exon9 c.G1095T p.E365D . . . UNC13B 10497 broad.mit.edu 36 9 35226523 35226523 + Silent SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006377 exon4 c.C210A p.I70I . . . RUSC2 9853 broad.mit.edu 36 9 35537106 35537106 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014806 exon2 c.A588G p.E196E . . . RUSC2 9853 broad.mit.edu 36 9 35538047 35538047 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014806 exon2 c.G1529T p.R510L . . . GBA2 57704 broad.mit.edu 36 9 35729047 35729047 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020944 exon11 c.G1747T p.A583S . . . NPR2 4882 broad.mit.edu 36 9 35782776 35782776 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003995 exon1 c.C371T p.A124V . . . OR13J1 392309 broad.mit.edu 36 9 35860002 35860002 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004487 exon1 c.C397T p.H133Y . . . GNE 10020 broad.mit.edu 36 9 36223937 36223937 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128227 exon5 c.G1055A p.R352H . . . CNTNAP3 79937 broad.mit.edu 36 9 39089923 39089923 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033655 exon18 c.C2980T p.P994S . . . JAK2 3717 broad.mit.edu 36 9 5079700 5079700 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004972 exon20 c.C2598T p.C866C . . . FAM75A5 727905 broad.mit.edu 36 9 65246289 65246289 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015667 exon4 c.G1091A p.R364Q . . . RORB 6096 broad.mit.edu 36 9 76435081 76435081 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006914 exon2 c.T71C p.V24A . . . TLE4 7091 broad.mit.edu 36 9 81457410 81457410 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007005 exon7 c.C473T p.P158L . . . CTSL1 1514 broad.mit.edu 36 9 89533468 89533468 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145918 exon5 c.T545C p.L182P . . . CDK20 23552 broad.mit.edu 36 9 89773979 89773979 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170640 exon5 c.C606T p.C202C . . . CDK20 23552 broad.mit.edu 36 9 89775984 89775984 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170640 exon3 c.G276A p.V92V . . . SHC3 53358 broad.mit.edu 36 9 90842998 90842998 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016848 exon11 c.C1386T p.N462N . . . NOL8 55035 broad.mit.edu 36 9 94121454 94121454 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017948 exon5 c.C287T p.A96V . . . PTCH1 5727 broad.mit.edu 36 9 97271062 97271062 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083605 exon14 c.C1589T p.P530L PTCH1,skin,chest,Substitution - Missense,0 . . ZNF510 22869 broad.mit.edu 36 9 98562019 98562019 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014930 exon6 c.G914T p.G305V . . . SLC31A2 1318 broad.mit.edu 36 9 114959894 114959894 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001860 exon2 c.73delG p.G25fs . . . COL27A1 85301 broad.mit.edu 36 9 116024344 116024344 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032888 exon14 c.2442delC p.G814fs . . . GOLGA2 2801 broad.mit.edu 36 9 130059211 130059211 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004486 exon26 c.2965delT p.Y989fs . . . C9orf86 55684 broad.mit.edu 36 9 138854039 138854039 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001173988 exon13 c.1834delC p.P612fs . . . ZNF658 26149 broad.mit.edu 36 9 40762182 40762183 + Frame_Shift_Del DEL AA - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 AA AA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033160 exon5 c.3092_3093del p.1031_1031del . . . FAM74A3 728495 broad.mit.edu 36 9 40705906 40705906 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . PNMA3 29944 broad.mit.edu 36 X 151976099 151976100 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 - - - G - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013364 exon2 c.31_32insG p.R11fs . . . TCEAL4 79921 broad.mit.edu 36 X 102728766 102728766 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024863 exon3 c.G507T p.K169N . . . MORF4L2 9643 broad.mit.edu 36 X 102817785 102817785 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142429 exon5 c.A827G p.Y276C . . . RNF128 79589 broad.mit.edu 36 X 105917815 105917815 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194463 exon4 c.T816C p.P272P . . . TEX13B 56156 broad.mit.edu 36 X 107111785 107111785 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031273 exon2 c.C229T p.R77C . . . ZBTB33 10009 broad.mit.edu 36 X 119271345 119271345 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006777 exon2 c.G47A p.G16D . . . GRIA3 2892 broad.mit.edu 36 X 122215045 122215045 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007325 exon3 c.A479C p.K160T . . . ODZ1 10178 broad.mit.edu 36 X 123345678 123345678 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014253 exon29 c.C6763T p.R2255X . . . DCAF12L2 340578 broad.mit.edu 36 X 125126701 125126701 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013628 exon1 c.C888T p.S296S . . . OCRL 4952 broad.mit.edu 36 X 128548710 128548710 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001587 exon19 c.A2166G p.R722R . . . ARHGAP36 158763 broad.mit.edu 36 X 130043537 130043537 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144967 exon2 c.G217A p.A73T . . . IL3RA 3563 broad.mit.edu 36 X 1424308 1424308 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002183 exon3 c.A164G p.D55G . . . SLITRK4 139065 broad.mit.edu 36 X 142545981 142545981 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173078 exon2 c.C610T p.R204C . . . MAGEA6 4105 broad.mit.edu 36 X 151620655 151620655 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005363 exon3 c.T689G p.V230G . . . PNMA5 114824 broad.mit.edu 36 X 151909909 151909909 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103150 exon2 c.C890T p.A297V . . . FIGF 2277 broad.mit.edu 36 X 15291249 15291249 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004469 exon2 c.G204A p.R68R . . . MECP2 4204 broad.mit.edu 36 X 152949413 152949413 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004992 exon4 c.C1060T p.R354C . . . MTCP1 4515 broad.mit.edu 36 X 153946995 153946995 + Silent SNP T C C novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018025 exon4 c.A288G p.V96V . . . GRPR 2925 broad.mit.edu 36 X 16078597 16078597 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005314 exon2 c.T662A p.I221N . . . PDHA1 5160 broad.mit.edu 36 X 19283521 19283521 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173454 exon8 c.G851A p.G284D . . . CNKSR2 22866 broad.mit.edu 36 X 21444550 21444550 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168647 exon9 c.G837A p.V279V . . . DHRSX 207063 broad.mit.edu 36 X 2149238 2149238 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145177 exon7 c.C837T p.Y279Y . . . YY2 404281 broad.mit.edu 36 X 21773356 21773356 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015884 exon3 c.C371G p.S124C . . . ACOT9 23597 broad.mit.edu 36 X 23632781 23632781 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037171 exon15 c.G1209A p.T403T . . . FAM47C 442444 broad.mit.edu 36 X 36938227 36938227 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013736 exon1 c.C1823T p.P608L . . . MED14 9282 broad.mit.edu 36 X 40403776 40403776 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004229 exon27 c.G3712A p.G1238R . . . USP11 8237 broad.mit.edu 36 X 46987775 46987775 + Silent SNP C A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004651 exon13 c.C1749A p.G583G . . . SYN1 6853 broad.mit.edu 36 X 47320878 47320878 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133499 exon7 c.C943T p.R315C . . . TBC1D25 4943 broad.mit.edu 36 X 48304186 48304186 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002536 exon6 c.G1946A p.R649H . . . OTUD5 55593 broad.mit.edu 36 X 48677018 48677018 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136157 exon4 c.C820T p.R274W . . . MAGED1 9500 broad.mit.edu 36 X 51656887 51656887 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006986 exon4 c.C1396T p.R466X . . . SMC1A 8243 broad.mit.edu 36 X 53453138 53453138 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006306 exon8 c.C1276T p.R426W . . . RIBC1 158787 broad.mit.edu 36 X 53473631 53473631 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031745 exon6 c.G649A p.A217T . . . PFKFB1 5207 broad.mit.edu 36 X 55002986 55002986 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002625 exon4 c.C383T p.A128V . . . ALAS2 212 broad.mit.edu 36 X 55056698 55056698 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037967 exon9 c.C1435A p.L479M . . . RRAGB 10325 broad.mit.edu 36 X 55801473 55801473 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016656 exon11 c.G1097A p.G366E . . . AR 367 broad.mit.edu 36 X 66858530 66858530 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011645 exon6 c.A853T p.I285F . . . PJA1 64219 broad.mit.edu 36 X 68298131 68298131 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001032396 exon2 c.C1511T p.A504V . . . P2RY4 5030 broad.mit.edu 36 X 69395120 69395120 + Silent SNP A G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002565 exon1 c.T1080C p.P360P . . . TAF1 6872 broad.mit.edu 36 X 70596183 70596183 + Silent SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138923 exon36 c.G5118A p.Q1706Q . . . MAGEE1 57692 broad.mit.edu 36 X 75567141 75567141 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020932 exon1 c.T2414G p.L805R . . . PCDH11X 27328 broad.mit.edu 36 X 91760167 91760167 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032968 exon7 c.G3616A p.A1206T . . . PCDH19 57526 broad.mit.edu 36 X 99549646 99549646 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105243 exon1 c.G606A p.S202S . . . TSPAN6 7105 broad.mit.edu 36 X 99778342 99778342 + Silent SNP C T T novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003270 exon1 c.G6A p.A2A . . . DCX 1641 broad.mit.edu 36 X 110531125 110531125 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178153 exon3 c.454delA p.T152fs . . . SAGE1 55511 broad.mit.edu 36 X 134821720 134821720 + Frame_Shift_Del DEL G - - rs4829584 byCluster;byFrequency;by2Hit2Allele;by1000genomes TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NM_018666 exon18 c.2463delG p.K821fs . . . TKTL1 8277 broad.mit.edu 36 X 153202442 153202442 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145933 exon8 c.1156delG p.G386fs . . . USP9X 8239 broad.mit.edu 36 X 40973979 40973979 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039590 exon43 c.7434delA p.V2478fs . . . ARAF 369 broad.mit.edu 36 X 47311038 47311038 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001654 exon7 c.614delC p.A205fs . . . HMGN5 79366 broad.mit.edu 36 X 80257119 80257119 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030763 exon7 c.534delA p.K178fs . . . TBL1X 6907 broad.mit.edu 36 X 9619692 9619692 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3715-01A-01W-0900-09 TCGA-AA-3715-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001139468 exon8 c.537delC p.G179fs . . .