Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
MGEA5	10724	broad.mit.edu	36	10	103553609	103553609	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012215	exon7	c.C909T	p.L303L	.	.	.
C10orf76	79591	broad.mit.edu	36	10	103597283	103597283	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024541	exon26	c.A2062G	p.I688V	.	.	.
TCF7L2	6934	broad.mit.edu	36	10	114891005	114891005	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001146284	exon5	c.G556T	p.E186X	.	.	.
HSPA12A	259217	broad.mit.edu	36	10	118424513	118424513	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025015	exon12	c.C1797T	p.V599V	.	.	.
CPXM2	119587	broad.mit.edu	36	10	125511573	125511573	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198148	exon11	c.G1582A	p.D528N	.	.	.
CHST15	51363	broad.mit.edu	36	10	125795379	125795379	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015892	exon2	c.G340A	p.G114R	.	.	.
CUBN	8029	broad.mit.edu	36	10	17010259	17010259	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001081	exon41	c.C6174A	p.I2058I	.	.	.
MLLT10	8028	broad.mit.edu	36	10	21924355	21924355	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001195626	exon4	c.C385T	p.P129S	.	.	.
GPR158	57512	broad.mit.edu	36	10	25917990	25917990	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020752	exon8	c.G1802A	p.R601Q	.	.	.
LDB3	11155	broad.mit.edu	36	10	88431394	88431394	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080115	exon4	c.C543T	p.L181L	.	.	.
ARHGAP20	57569	broad.mit.edu	36	11	110066530	110066530	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020809	exon3	c.C138T	p.S46S	.	.	.
HYOU1	10525	broad.mit.edu	36	11	118430930	118430930	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006389	exon6	c.C472T	p.R158C	.	.	.
ARHGEF12	23365	broad.mit.edu	36	11	119857214	119857214	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001198665	exon38	c.C4216A	p.Q1406K	.	.	.
KIRREL3	84623	broad.mit.edu	36	11	125838391	125838391	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032531	exon6	c.C613T	p.R205W	.	.	.
KRTAP5-5	439915	broad.mit.edu	36	11	1607805	1607805	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001480	exon1	c.G159A	p.A53A	.	.	.
KCNA4	3739	broad.mit.edu	36	11	29990694	29990694	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002233	exon2	c.C108G	p.S36S	.	.	.
OR51I2	390064	broad.mit.edu	36	11	5432192	5432192	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004754	exon1	c.C898T	p.R300C	.	.	.
NPAS4	266743	broad.mit.edu	36	11	65945386	65945386	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178864	exon1	c.G160A	p.V54I	.	.	.
CABP4	57010	broad.mit.edu	36	11	66980403	66980403	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_145200	exon3	c.G455A	p.R152Q	.	.	.
FOLR1	2348	broad.mit.edu	36	11	71584339	71584339	+	Silent	SNP	C	T	T	rs61735636	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016724	exon5	c.C393T	p.N131N	.	.	.
OR5P2	120065	broad.mit.edu	36	11	7775056	7775056	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153444	exon1	c.C10A	p.L4M	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122943746	122943746	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207437	exon52	c.G8655A	p.A2885A	.	.	.
PDE3A	5139	broad.mit.edu	36	12	20657677	20657677	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000921	exon3	c.G1045A	p.V349I	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
SSPN	8082	broad.mit.edu	36	12	26268570	26268570	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135823	exon2	c.T48C	p.F16F	.	.	.
TMTC1	83857	broad.mit.edu	36	12	29648470	29648470	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001193451	exon7	c.C1158T	p.G386G	.	.	.
LRRK2	120892	broad.mit.edu	36	12	38979269	38979269	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198578	exon25	c.A3439T	p.N1147Y	.	.	.
ARID2	196528	broad.mit.edu	36	12	44532824	44532824	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152641	exon15	c.G4651A	p.A1551T	.	.	.
KRT85	3891	broad.mit.edu	36	12	51045102	51045102	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002283	exon2	c.G540T	p.R180R	.	.	.
ERBB3	2065	broad.mit.edu	36	12	54765121	54765121	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005915	exon3	c.G310A	p.V104M	 ERBB3,ovary,NS,Substitution - Missense,0 	.	.
CD163	9332	broad.mit.edu	36	12	7531878	7531878	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_203416	exon7	c.C1493A	p.T498K	.	.	.
ACSS3	79611	broad.mit.edu	36	12	80069921	80069921	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024560	exon7	c.C1013A	p.A338E	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8882243	8882243	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144670	exon9	c.C900A	p.T300T	.	.	.
UGGT2	55757	broad.mit.edu	36	13	95351161	95351162	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020121	exon22	c.2535_2536insA	p.Y845_N846delinsX	.	.	.
IFT88	8100	broad.mit.edu	36	13	20135643	20135643	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175605	exon25	c.G2102A	p.R701H	.	.	.
SACS	26278	broad.mit.edu	36	13	22809660	22809660	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014363	exon10	c.C6355T	p.R2119X	.	.	.
SLITRK5	26050	broad.mit.edu	36	13	87127551	87127551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015567	exon2	c.C1907T	p.A636V	.	.	.
SALL2	6297	broad.mit.edu	36	14	21062525	21062525	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005407	exon2	c.C1177T	p.R393C	.	.	.
RABGGTA	5875	broad.mit.edu	36	14	23809394	23809394	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004581	exon3	c.G225T	p.Q75H	.	.	.
MDGA2	161357	broad.mit.edu	36	14	46670757	46670757	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001113498	exon5	c.G835T	p.D279Y	.	.	.
FLRT2	23768	broad.mit.edu	36	14	85158802	85158802	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013231	exon2	c.T1191A	p.P397P	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93226287	93226287	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020818	exon46	c.A6743C	p.H2248P	.	.	.
TMCO5A	145942	broad.mit.edu	36	15	36016365	36016365	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152453	exon3	c.C166T	p.R56W	.	.	.
CGNL1	84952	broad.mit.edu	36	15	55517745	55517745	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032866	exon2	c.C256T	p.L86L	.	.	.
CHRNA5	1138	broad.mit.edu	36	15	76669340	76669340	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000745	exon5	c.T552C	p.C184C	.	.	.
BNC1	646	broad.mit.edu	36	15	81726687	81726687	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001717	exon3	c.C340T	p.R114W	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3764676	3764676	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004380	exon12	c.C2178T	p.P726P	.	.	.
SLC6A2	6530	broad.mit.edu	36	16	54263377	54263377	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001172504	exon3	c.G433A	p.A145T	.	.	.
CDH8	1006	broad.mit.edu	36	16	60245068	60245068	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001796	exon12	c.G2345A	p.R782H	.	.	.
KCTD19	146212	broad.mit.edu	36	16	65887590	65887590	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100915	exon8	c.C1221T	p.Y407Y	.	.	.
RBFOX1	54715	broad.mit.edu	36	16	7666833	7666833	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_145893	exon11	c.C1050A	p.Y350X	.	.	.
KLHL10	317719	broad.mit.edu	36	17	37247778	37247778	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152467	exon1	c.C68T	p.A23V	.	.	.
AMAC1L3	643664	broad.mit.edu	36	17	7326754	7326754	+	Missense_Mutation	SNP	C	T	T	rs71360891	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001102614	exon2	c.C727T	p.P243S	.	.	.
USP36	57602	broad.mit.edu	36	17	74343825	74343825	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025090	exon3	c.C216A	p.R72R	.	.	.
SERPINB11	89778	broad.mit.edu	36	18	59539062	59539062	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080475	exon7	c.G636A	p.V212V	.	.	.
PIK3R2	5296	broad.mit.edu	36	19	18134104	18134105	+	Frame_Shift_Ins	INS	-	GG	GG	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005027	exon8	c.994_995insGG	p.W332fs	.	.	.
HOOK2	29911	broad.mit.edu	36	19	12736856	12736856	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100176	exon18	c.G1674A	p.K558K	.	.	.
NFIX	4784	broad.mit.edu	36	19	13062145	13062145	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002501	exon9	c.C1287T	p.T429T	.	.	.
OR10H5	284433	broad.mit.edu	36	19	15765971	15765971	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004466	exon1	c.C113T	p.T38M	.	.	.
SLC35E1	79939	broad.mit.edu	36	19	16525644	16525644	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024881	exon6	c.G1079A	p.R360H	.	.	.
SLC35E1	79939	broad.mit.edu	36	19	16539926	16539926	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024881	exon3	c.G547A	p.E183K	.	.	.
HNRNPL	3191	broad.mit.edu	36	19	44022616	44022616	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005335	exon8	c.G794A	p.R265Q	.	.	.
LIPE	3991	broad.mit.edu	36	19	47604018	47604018	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005357	exon4	c.G1606A	p.V536M	.	.	.
PSG1	5669	broad.mit.edu	36	19	48075540	48075540	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006905	exon1	c.C34A	p.R12S	.	.	.
IRGC	56269	broad.mit.edu	36	19	48915541	48915541	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019612	exon2	c.C991T	p.R331C	.	.	.
EXOC3L2	90332	broad.mit.edu	36	19	50426912	50426912	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138568	exon2	c.C39T	p.L13L	.	.	.
ZNF808	388558	broad.mit.edu	36	19	57750382	57750382	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001039886	exon5	c.G2401A	p.V801M	.	.	.
ZNF160	90338	broad.mit.edu	36	19	58263681	58263681	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198893	exon7	c.C1918T	p.R640W	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61070961	61070961	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_134444	exon6	c.C2261T	p.T754M	.	.	.
NLRP13	126204	broad.mit.edu	36	19	61115052	61115052	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_176810	exon5	c.A1943G	p.E648G	.	.	.
AKNAD1	254268	broad.mit.edu	36	1	109179080	109179080	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152763	exon8	c.C1658T	p.P553L	.	.	.
GJA8	2703	broad.mit.edu	36	1	145847871	145847871	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005267	exon2	c.G1165A	p.E389K	.	.	.
IGSF9	57549	broad.mit.edu	36	1	158167884	158167884	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135050	exon12	c.C1496T	p.T499M	.	.	.
TAS1R2	80834	broad.mit.edu	36	1	19053563	19053563	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152232	exon3	c.G988A	p.V330M	.	.	.
KCNK2	3776	broad.mit.edu	36	1	213326470	213326470	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001017424	exon2	c.G171A	p.T57T	.	.	.
ZBTB40	9923	broad.mit.edu	36	1	22700595	22700595	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014870	exon4	c.T855C	p.G285G	.	.	.
EPHA8	2046	broad.mit.edu	36	1	22800513	22800513	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020526	exon16	c.G2863A	p.G955R	.	.	.
OR2L13	284521	broad.mit.edu	36	1	246329529	246329529	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175911	exon3	c.G229A	p.V77I	.	.	.
OR2T12	127064	broad.mit.edu	36	1	246524993	246524993	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004692	exon1	c.G511A	p.E171K	.	.	.
EIF2C3	192669	broad.mit.edu	36	1	36210342	36210342	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024852	exon4	c.C443T	p.P148L	.	.	.
HIVEP3	59269	broad.mit.edu	36	1	41763130	41763130	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024503	exon6	c.G5246A	p.R1749H	.	.	.
ZCCHC11	23318	broad.mit.edu	36	1	52735418	52735418	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001009881	exon5	c.G1025A	p.R342H	.	.	.
DAB1	1600	broad.mit.edu	36	1	57253317	57253317	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021080	exon14	c.C1271T	p.P424L	.	.	.
TNNI3K	51086	broad.mit.edu	36	1	74592284	74592284	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199327	exon13	c.C1363T	p.R455C	.	.	.
PHACTR3	116154	broad.mit.edu	36	20	57763735	57763735	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080672	exon4	c.C462T	p.P154P	.	.	.
KRTAP22-1	337979	broad.mit.edu	36	21	30895356	30895356	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181620	exon1	c.G46T	p.G16X	.	.	.
TPTE	7179	broad.mit.edu	36	21	9973204	9973204	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199259	exon9	c.C325T	p.R109C	.	.	.
PNPLA5	150379	broad.mit.edu	36	22	42611526	42611526	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138814	exon7	c.C982T	p.R328W	.	.	.
RIBC2	26150	broad.mit.edu	36	22	44200497	44200497	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015653	exon5	c.C665T	p.S222L	.	.	.
LONRF2	164832	broad.mit.edu	36	2	100273179	100273179	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198461	exon10	c.G1893A	p.A631A	.	.	.
NPAS2	4862	broad.mit.edu	36	2	100947045	100947045	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002518	exon8	c.G692A	p.R231H	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141357897	141357897	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018557	exon25	c.C4128A	p.A1376A	.	.	.
TPO	7173	broad.mit.edu	36	2	1486816	1486816	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175719	exon13	c.G2305A	p.A769T	.	.	.
SLC4A10	57282	broad.mit.edu	36	2	162459468	162459468	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001178016	exon11	c.C1171T	p.R391C	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166578568	166578568	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001165964	exon18	c.C3553T	p.R1185X	.	.	.
GAD1	2571	broad.mit.edu	36	2	171395765	171395765	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000817	exon5	c.G364T	p.D122Y	.	.	.
WDR35	57539	broad.mit.edu	36	2	20037772	20037772	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001006657	exon7	c.C674T	p.P225L	.	.	.
ERBB4	2066	broad.mit.edu	36	2	212274986	212274986	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005235	exon12	c.A1440T	p.T480T	.	.	.
TNS1	7145	broad.mit.edu	36	2	218421572	218421572	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022648	exon17	c.C1538T	p.A513V	.	.	.
TTLL4	9654	broad.mit.edu	36	2	219320131	219320131	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014640	exon9	c.C2136G	p.S712R	.	.	.
COL4A4	1286	broad.mit.edu	36	2	227580397	227580397	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000092	exon48	c.C4961T	p.T1654M	.	.	.
CXCR7	57007	broad.mit.edu	36	2	237154805	237154805	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020311	exon2	c.C958T	p.R320C	.	.	.
PPP1CB	5500	broad.mit.edu	36	2	28853328	28853328	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_206876	exon3	c.T160G	p.L54V	.	.	.
PRKCE	5581	broad.mit.edu	36	2	46065236	46065236	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005400	exon6	c.G736A	p.G246S	.	.	.
CCDC88A	55704	broad.mit.edu	36	2	55415585	55415585	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135597	exon15	c.C1876T	p.R626X	.	.	.
KALRN	8997	broad.mit.edu	36	3	125656788	125656788	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003947	exon22	c.G3621A	p.T1207T	.	.	.
EPHB1	2047	broad.mit.edu	36	3	136334263	136334263	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004441	exon5	c.C979T	p.R327C	.	.	.
C3orf43	255798	broad.mit.edu	36	3	197719192	197719192	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001077657	exon3	c.C608A	p.S203X	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4727034	4727034	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001099952	exon38	c.G4841A	p.R1614H	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77734108	77734108	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001128929	exon19	c.G2853A	p.W951X	.	.	.
SEC24B	10427	broad.mit.edu	36	4	110667942	110667942	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006323	exon18	c.G2981A	p.R994K	.	.	.
ALPK1	80216	broad.mit.edu	36	4	113580435	113580435	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025144	exon14	c.T3496A	p.Y1166N	.	.	.
DDX60	55601	broad.mit.edu	36	4	169441229	169441229	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017631	exon13	c.G1665A	p.V555V	.	.	.
LRRC66	339977	broad.mit.edu	36	4	52555701	52555701	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001024611	exon4	c.G2244A	p.T748T	.	.	.
KDR	3791	broad.mit.edu	36	4	55666838	55666838	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002253	exon12	c.G1563A	p.A521A	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79457624	79457624	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025074	exon17	c.G1898A	p.R633H	.	.	.
NUDT12	83594	broad.mit.edu	36	5	102915852	102915852	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031438	exon6	c.G1243A	p.E415K	.	.	.
APC	324	broad.mit.edu	36	5	112144491	112144491	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon5	c.C667T	p.R223X	 APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.
TRPC7	57113	broad.mit.edu	36	5	135720463	135720463	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020389	exon2	c.C512T	p.A171V	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13767550	13767550	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001369	exon75	c.G13089T	p.M4363I	.	.	.
PCDHB1	29930	broad.mit.edu	36	5	140412361	140412361	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013340	exon1	c.G1122A	p.R374R	.	.	.
PCDHB1	29930	broad.mit.edu	36	5	140412719	140412719	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013340	exon1	c.C1480A	p.P494T	.	.	.
PCDHGA6	56109	broad.mit.edu	36	5	140735446	140735446	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032086	exon1	c.G1612A	p.G538R	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167550047	167550047	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001122679	exon14	c.G2670T	p.V890V	.	.	.
HCN1	348980	broad.mit.edu	36	5	45298240	45298240	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021072	exon8	c.T2213C	p.V738A	.	.	.
IQGAP2	10788	broad.mit.edu	36	5	76032715	76032715	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006633	exon34	c.G4426A	p.A1476T	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79068271	79068271	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153610	exon2	c.C7927T	p.R2643C	.	.	.
VCAN	1462	broad.mit.edu	36	5	82853723	82853723	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164098	exon7	c.C3842T	p.T1281M	.	.	.
LYRM2	57226	broad.mit.edu	36	6	90403735	90403736	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020466	exon3	c.245_246insA	p.T82fs	.	.	.
TXLNB	167838	broad.mit.edu	36	6	139605916	139605916	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153235	exon10	c.G1495A	p.A499T	.	.	.
GRM1	2911	broad.mit.edu	36	6	146522299	146522299	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001114329	exon3	c.C823T	p.R275C	.	.	.
UHRF1BP1	54887	broad.mit.edu	36	6	34932679	34932679	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017754	exon11	c.C1426T	p.H476Y	.	.	.
TRERF1	55809	broad.mit.edu	36	6	42341479	42341479	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033502	exon6	c.C1472T	p.S491F	.	.	.
KLC4	89953	broad.mit.edu	36	6	43137076	43137076	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_201521	exon2	c.C25T	p.R9W	.	.	.
EXOC2	55770	broad.mit.edu	36	6	509658	509658	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018303	exon15	c.C1554T	p.R518R	.	.	.
PHF3	23469	broad.mit.edu	36	6	64452417	64452417	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015153	exon3	c.A835G	p.K279E	.	.	.
FILIP1	27145	broad.mit.edu	36	6	76081514	76081514	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015687	exon5	c.G754A	p.D252N	.	.	.
RELN	5649	broad.mit.edu	36	7	102972891	102972891	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005045	exon42	c.A6439G	p.K2147E	.	.	.
SLC26A3	1811	broad.mit.edu	36	7	107204148	107204148	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000111	exon15	c.G1662A	p.R554R	.	.	.
NRCAM	4897	broad.mit.edu	36	7	107625655	107625655	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001037132	exon11	c.C1332T	p.N444N	.	.	.
FLNC	2318	broad.mit.edu	36	7	128279999	128279999	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001458	exon36	c.C5961T	p.N1987N	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131522891	131522891	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020911	exon15	c.G2872T	p.D958Y	.	.	.
CHRM2	1129	broad.mit.edu	36	7	136351294	136351294	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000739	exon4	c.G1142A	p.R381Q	.	.	.
OR2A5	393046	broad.mit.edu	36	7	143379095	143379095	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012365	exon1	c.C668T	p.A223V	.	.	.
SSPO	23145	broad.mit.edu	36	7	149160839	149160839	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198455	exon102	c.C15339T	p.P5113P	.	.	.
CHPF2	54480	broad.mit.edu	36	7	150563267	150563267	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019015	exon2	c.G464A	p.R155Q	.	.	.
EIF2AK1	27102	broad.mit.edu	36	7	6050722	6050722	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001134335	exon7	c.C727T	p.R243X	.	.	.
POM121C	100101267	broad.mit.edu	36	7	74890323	74890323	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099415	exon13	c.T1148C	p.L383P	.	.	.
RP1L1	94137	broad.mit.edu	36	8	10504490	10504490	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178857	exon4	c.G4528A	p.A1510T	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139218662	139218662	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015912	exon19	c.G3925A	p.V1309M	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139925547	139925547	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152888	exon4	c.G695A	p.R232H	.	.	.
TRAPPC9	83696	broad.mit.edu	36	8	140991590	140991590	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001160372	exon20	c.G2947A	p.G983S	.	.	.
PREX2	80243	broad.mit.edu	36	8	69113014	69113014	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025170	exon7	c.G772T	p.G258X	.	.	.
TNC	3371	broad.mit.edu	36	9	116848713	116848713	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002160	exon17	c.C4922A	p.T1641K	.	.	.
PSMD5	5711	broad.mit.edu	36	9	122635435	122635435	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005047	exon2	c.T294A	p.S98S	.	.	.
SLC25A25	114789	broad.mit.edu	36	9	129909466	129909466	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001006643	exon10	c.G1023T	p.M341I	.	.	.
FNBP1	23048	broad.mit.edu	36	9	131702101	131702101	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015033	exon15	c.G1651A	p.A551T	.	.	.
GBA2	57704	broad.mit.edu	36	9	35728792	35728792	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020944	exon12	c.C1904T	p.T635M	.	.	.
AK3	50808	broad.mit.edu	36	9	4708526	4708526	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199854	exon4	c.C456G	p.D152E	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79032898	79032898	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001018037	exon17	c.C1493A	p.S498Y	.	.	.
FBP2	8789	broad.mit.edu	36	9	96369454	96369454	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003837	exon5	c.G624T	p.K208N	.	.	.
NCBP1	4686	broad.mit.edu	36	9	99442977	99442977	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002486	exon2	c.G115A	p.G39R	.	.	.
ARMCX5	64860	broad.mit.edu	36	X	101745382	101745382	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001168485	exon5	c.C1657T	p.R553X	.	.	.
NRK	203447	broad.mit.edu	36	X	105040170	105040170	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198465	exon13	c.A1881T	p.L627L	.	.	.
GRIA3	2892	broad.mit.edu	36	X	122147478	122147478	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007325	exon2	c.G223A	p.V75I	.	.	.
FRMPD4	9758	broad.mit.edu	36	X	12645744	12645744	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014728	exon16	c.G2878A	p.A960T	.	.	.
SLC9A6	10479	broad.mit.edu	36	X	134920373	134920373	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001177651	exon8	c.G850C	p.A284P	.	.	.
SLC9A6	10479	broad.mit.edu	36	X	134950004	134950004	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001177651	exon16	c.G1675A	p.E559K	.	.	.
BRS3	680	broad.mit.edu	36	X	135400302	135400302	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001727	exon2	c.G779A	p.R260H	.	.	.
MAGEA4	4103	broad.mit.edu	36	X	150843483	150843483	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002362	exon3	c.G691C	p.V231L	.	.	.
IL9R	3581	broad.mit.edu	36	X	154885862	154885862	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002186	exon2	c.C126G	p.V42V	.	.	.
FAM47A	158724	broad.mit.edu	36	X	34060100	34060100	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_203408	exon1	c.C217T	p.R73C	.	.	.
PJA1	64219	broad.mit.edu	36	X	68298132	68298132	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001032396	exon2	c.G1510A	p.A504T	.	.	.
MAGEE1	57692	broad.mit.edu	36	X	75565726	75565726	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020932	exon1	c.G999A	p.P333P	.	.	.
PGK1	5230	broad.mit.edu	36	X	77265455	77265455	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000291	exon8	c.T864C	p.T288T	.	.	.
KLHL4	56062	broad.mit.edu	36	X	86759664	86759664	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_057162	exon4	c.C801G	p.V267V	.	.	.
TBL1X	6907	broad.mit.edu	36	X	9619688	9619688	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001139468	exon8	c.G533A	p.R178Q	.	.	.
TBL1X	6907	broad.mit.edu	36	X	9644278	9644278	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001139468	exon18	c.C1573T	p.R525W	.	.	.