Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
MMS19	64210	broad.mit.edu	36	10	99212354	99212354	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022362	exon20	c.C1988T	p.T663I	.	.	.
BCL9L	283149	broad.mit.edu	36	11	118277982	118277982	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182557	exon6	c.C1680T	p.P560P	.	.	.
DNHD1	144132	broad.mit.edu	36	11	6549090	6549090	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144666	exon42	c.G13772A	p.R4591H	.	.	.
CMKLR1	1240	broad.mit.edu	36	12	107210159	107210159	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142343	exon4	c.A711C	p.T237T	.	.	.
SBNO1	55206	broad.mit.edu	36	12	122366158	122366158	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018183	exon21	c.C2935T	p.R979C	.	.	.
PLXNC1	10154	broad.mit.edu	36	12	93165961	93165961	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005761	exon13	c.C2540T	p.T847M	.	.	.
NBEA	26960	broad.mit.edu	36	13	34631237	34631237	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015678	exon22	c.A2929C	p.K977Q	.	.	.
MYH6	4624	broad.mit.edu	36	14	22936301	22936301	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002471	exon17	c.T1968C	p.N656N	.	.	.
RGS6	9628	broad.mit.edu	36	14	71994830	71994830	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004296	exon5	c.C334T	p.R112C	.	.	.
MAP1A	4130	broad.mit.edu	36	15	41606093	41606093	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002373	exon4	c.C5130T	p.H1710H	.	.	.
CHSY1	22856	broad.mit.edu	36	15	99535169	99535169	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014918	exon3	c.G2356A	p.D786N	.	.	.
NUP93	9688	broad.mit.edu	36	16	55349964	55349964	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014669	exon3	c.G193A	p.G65R	.	.	.
ABAT	18	broad.mit.edu	36	16	8770281	8770281	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000663	exon11	c.G766A	p.E256K	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9835573	9835573	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001134408	exon8	c.C1667A	p.S556Y	.	.	.
EPX	8288	broad.mit.edu	36	17	53635669	53635669	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000502	exon11	c.A1937T	p.D646V	.	.	.
NOL4	8715	broad.mit.edu	36	18	29791433	29791433	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001198549	exon4	c.C428A	p.P143Q	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21946869	21946869	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007153	exon4	c.A2807C	p.K936T	.	.	.
GLTSCR1	29998	broad.mit.edu	36	19	52868676	52868676	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015711	exon3	c.C33T	p.D11D	.	.	.
PLEKHA4	57664	broad.mit.edu	36	19	54055424	54055424	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020904	exon6	c.C471T	p.D157D	.	.	.
PHTF1	10745	broad.mit.edu	36	1	114055955	114055955	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006608	exon9	c.G983A	p.C328Y	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118338637	118338637	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_206996	exon35	c.C5093A	p.A1698E	.	.	.
SEC16B	89866	broad.mit.edu	36	1	176190050	176190050	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033127	exon11	c.T1450A	p.W484R	.	.	.
MYBPH	4608	broad.mit.edu	36	1	201407262	201407262	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004997	exon5	c.T665G	p.M222R	.	.	.
CR1	1378	broad.mit.edu	36	1	205856723	205856723	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000651	exon41	c.G6842A	p.G2281E	.	.	.
KIAA1804	84451	broad.mit.edu	36	1	231578332	231578332	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032435	exon7	c.C1723T	p.R575X	.	.	.
CSMD2	114784	broad.mit.edu	36	1	34327207	34327207	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052896	exon2	c.C242T	p.S81L	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37063999	37063999	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000831	exon11	c.G1546T	p.V516L	.	.	.
FAM73A	374986	broad.mit.edu	36	1	78113152	78113152	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198549	exon16	c.G1714T	p.D572Y	.	.	.
NKX2-2	4821	broad.mit.edu	36	20	21441012	21441013	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002509	exon2	c.371_372insG	p.D124fs	.	.	.
PCNA	5111	broad.mit.edu	36	20	5046117	5046117	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002592	exon5	c.C581T	p.A194V	.	.	.
CACNA1I	8911	broad.mit.edu	36	22	38398258	38398258	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021096	exon27	c.C4648T	p.R1550X	.	.	.
PKDREJ	10343	broad.mit.edu	36	22	45036926	45036926	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006071	exon1	c.G958A	p.E320K	.	.	.
CERK	64781	broad.mit.edu	36	22	45495545	45495545	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022766	exon2	c.C174T	p.I58I	.	.	.
STAT1	6772	broad.mit.edu	36	2	191555432	191555432	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007315	exon18	c.C1504T	p.L502L	.	.	.
CCDC108	255101	broad.mit.edu	36	2	219592599	219592599	+	Missense_Mutation	SNP	T	C	C	rs34309488	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_194302	exon20	c.A3346G	p.M1116V	.	.	.
SP140	11262	broad.mit.edu	36	2	230858739	230858739	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007237	exon17	c.C1593A	p.V531V	.	.	.
CEBPZ	10153	broad.mit.edu	36	2	37309368	37309368	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005760	exon2	c.A472G	p.K158E	.	.	.
PRKCE	5581	broad.mit.edu	36	2	46057108	46057108	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005400	exon3	c.G449A	p.R150H	.	.	.
BCL11A	53335	broad.mit.edu	36	2	60541368	60541368	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022893	exon4	c.C2183T	p.P728L	.	.	.
MEIS1	4211	broad.mit.edu	36	2	66518385	66518385	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002398	exon2	c.C25T	p.P9S	.	.	.
BCL6	604	broad.mit.edu	36	3	188928963	188928964	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130845	exon6	c.1419_1420insC	p.P473fs	.	.	.
NR2C2	7182	broad.mit.edu	36	3	15037405	15037405	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003298	exon6	c.G575A	p.R192Q	.	.	.
GRM7	2917	broad.mit.edu	36	3	7431754	7431754	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000844	exon5	c.A1078C	p.R360R	.	.	.
EPHA3	2042	broad.mit.edu	36	3	89342040	89342040	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005233	exon3	c.A494G	p.N165S	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13187649	13187649	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_148894	exon25	c.G8949A	p.E2983E	.	.	.
PAM	5066	broad.mit.edu	36	5	102288606	102288606	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138822	exon5	c.G403A	p.A135T	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11164106	11164106	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001332	exon14	c.C2327T	p.A776V	.	.	.
APC	324	broad.mit.edu	36	5	112202011	112202011	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.G2767T	p.E923X	 APC,stomach,NS,Substitution - Nonsense,+2 	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140692574	140692574	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031993	exon1	c.G2139A	p.A713A	.	.	.
ZNF300	91975	broad.mit.edu	36	5	150255442	150255442	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001172831	exon7	c.G1600T	p.E534X	.	.	.
IL12B	3593	broad.mit.edu	36	5	158676298	158676298	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002187	exon7	c.C960T	p.S320S	.	.	.
ITGA2	3673	broad.mit.edu	36	5	52383085	52383085	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002203	exon7	c.T718A	p.S240T	.	.	.
SERAC1	84947	broad.mit.edu	36	6	158458792	158458792	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032861	exon13	c.A1358G	p.Y453C	.	.	.
KIF13A	63971	broad.mit.edu	36	6	17902461	17902461	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022113	exon25	c.C3220T	p.Q1074X	.	.	.
DEF6	50619	broad.mit.edu	36	6	35388222	35388222	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022047	exon4	c.G589A	p.V197M	.	.	.
CPA1	1357	broad.mit.edu	36	7	129808755	129808755	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001868	exon3	c.C196T	p.R66X	.	.	.
CHRM2	1129	broad.mit.edu	36	7	136351468	136351468	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000739	exon4	c.G1316A	p.C439Y	.	.	.
CNTNAP2	26047	broad.mit.edu	36	7	147545433	147545433	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014141	exon19	c.C3131T	p.P1044L	.	.	.
SDK1	221935	broad.mit.edu	36	7	4120219	4120219	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152744	exon25	c.G3610A	p.G1204R	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48402224	48402224	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152701	exon36	c.T11652C	p.S3884S	.	.	.
ADCY8	114	broad.mit.edu	36	8	131931127	131931127	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001115	exon10	c.G2315A	p.R772Q	.	.	.
SLA	6503	broad.mit.edu	36	8	134131350	134131350	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001045556	exon5	c.G227T	p.C76F	.	.	.
OR13F1	138805	broad.mit.edu	36	9	106306728	106306728	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004485	exon1	c.C364T	p.R122W	.	.	.
DIRAS2	54769	broad.mit.edu	36	9	92415833	92415833	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017594	exon2	c.C97T	p.R33W	.	.	.
CCDC160	347475	broad.mit.edu	36	X	133207077	133207077	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001101357	exon2	c.C581A	p.T194K	.	.	.