Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target PCDH15 65217 broad.mit.edu 36 10 55251774 55251775 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001142765 exon32 c.5511_5512insA p.N1837fs . . . LOXL4 84171 broad.mit.edu 36 10 100012761 100012761 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032211 exon2 c.G6A p.A2A . . . DNMBP 23268 broad.mit.edu 36 10 101649786 101649786 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015221 exon7 c.A2582G p.E861G . . . SEMA4G 57715 broad.mit.edu 36 10 102727400 102727400 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017893 exon4 c.C358T p.R120W . . . GTPBP4 23560 broad.mit.edu 36 10 1031911 1031911 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012341 exon3 c.G262A p.D88N . . . LDB1 8861 broad.mit.edu 36 10 103858796 103858796 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001113407 exon10 c.G985A p.A329T . . . NOLC1 9221 broad.mit.edu 36 10 103910352 103910352 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004741 exon10 c.C1253T p.T418M . . . SFXN2 118980 broad.mit.edu 36 10 104476484 104476484 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178858 exon2 c.G101A p.R34H . . . PDCD11 22984 broad.mit.edu 36 10 105184582 105184582 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014976 exon25 c.C3705T p.G1235G . . . PDCD11 22984 broad.mit.edu 36 10 105187779 105187779 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014976 exon26 c.C3863T p.T1288I . . . C10orf79 80217 broad.mit.edu 36 10 105893301 105893301 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025145 exon32 c.C4031T p.A1344V . . . SORCS3 22986 broad.mit.edu 36 10 107012199 107012199 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014978 exon26 c.T3564C p.P1188P . . . SORCS1 114815 broad.mit.edu 36 10 108913826 108913826 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052918 exon1 c.C449A p.A150D . . . CELF2 10659 broad.mit.edu 36 10 11247493 11247493 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025077 exon2 c.A92G p.H31R . . . VWA2 340706 broad.mit.edu 36 10 116036084 116036084 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198496 exon11 c.C1394T p.A465V . . . USP6NL 9712 broad.mit.edu 36 10 11609538 11609538 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014688 exon3 c.G39A p.Q13Q . . . PNLIPRP3 119548 broad.mit.edu 36 10 118210547 118210547 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011709 exon6 c.C645T p.D215D . . . PNLIPRP3 119548 broad.mit.edu 36 10 118226162 118226162 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011709 exon11 c.T1181G p.L394R . . . SEC61A2 55176 broad.mit.edu 36 10 12242956 12242956 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142627 exon10 c.G997A p.A333T . . . WDR11 55717 broad.mit.edu 36 10 122639434 122639434 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018117 exon18 c.C2266T p.R756C . . . MCM10 55388 broad.mit.edu 36 10 13257619 13257619 + Silent SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018518 exon6 c.G696T p.G232G . . . MCM10 55388 broad.mit.edu 36 10 13291105 13291105 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018518 exon19 c.G2507A p.G836D . . . BNIP3 664 broad.mit.edu 36 10 133632042 133632042 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004052 exon6 c.G561T p.L187L . . . KNDC1 85442 broad.mit.edu 36 10 134865084 134865084 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152643 exon17 c.C3079T p.R1027W . . . FRMD4A 55691 broad.mit.edu 36 10 13742344 13742344 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018027 exon20 c.C1876T p.R626C . . . CUBN 8029 broad.mit.edu 36 10 16982808 16982808 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081 exon53 c.G8232T p.W2744C . . . TRDMT1 1787 broad.mit.edu 36 10 17235528 17235528 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004412 exon10 c.A1059G p.G353G . . . SPAG6 9576 broad.mit.edu 36 10 22739991 22739991 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012443 exon10 c.G1340A p.R447Q . . . KIAA1217 56243 broad.mit.edu 36 10 24850776 24850776 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_019590 exon12 c.G2368A p.V790M . . . PDSS1 23590 broad.mit.edu 36 10 27075298 27075298 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014317 exon12 c.G1138A p.A380T . . . ANKRD26 22852 broad.mit.edu 36 10 27368941 27368941 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014915 exon21 c.G2334A p.E778E . . . MASTL 84930 broad.mit.edu 36 10 27494092 27494092 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172303 exon5 c.G647T p.S216I . . . RAB18 22931 broad.mit.edu 36 10 27855796 27855796 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021252 exon3 c.A158G p.D53G . . . MKX 283078 broad.mit.edu 36 10 28064170 28064170 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173576 exon4 c.A488T p.D163V . . . ARMC4 55130 broad.mit.edu 36 10 28189716 28189716 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018076 exon19 c.T2865C p.N955N . . . LYZL1 84569 broad.mit.edu 36 10 29621602 29621602 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032517 exon3 c.C426T p.V142V . . . SVIL 6840 broad.mit.edu 36 10 29862207 29862207 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021738 exon8 c.T1095C p.R365R . . . ZEB1 6935 broad.mit.edu 36 10 31855677 31855677 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174093 exon8 c.C2794T p.R932X . . . ITGB1 3688 broad.mit.edu 36 10 33261467 33261467 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133376 exon3 c.T135C p.C45C . . . RET 5979 broad.mit.edu 36 10 42924539 42924539 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020975 exon6 c.C1118T p.A373V RET,ovary,NS,Substitution - coding silent,-1 . . GDF2 2658 broad.mit.edu 36 10 48033590 48033590 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016204 exon2 c.C1284T p.C428C . . . ANK3 288 broad.mit.edu 36 10 61501949 61501949 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020987 exon37 c.C8696T p.S2899F . . . ANK3 288 broad.mit.edu 36 10 61709367 61709367 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020987 exon2 c.G151T p.A51S . . . EGR2 1959 broad.mit.edu 36 10 64243274 64243274 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000399 exon2 c.G1130A p.R377H . . . JMJD1C 221037 broad.mit.edu 36 10 64623127 64623127 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004241 exon12 c.T5189C p.M1730T . . . SIRT1 23411 broad.mit.edu 36 10 69342729 69342729 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142498 exon7 c.C965T p.A322V . . . MYPN 84665 broad.mit.edu 36 10 69627219 69627219 + Missense_Mutation SNP G A A rs71584501 unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032578 exon16 c.G3263A p.R1088H . . . SFMBT2 57713 broad.mit.edu 36 10 7254517 7254517 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029880 exon18 c.C2097T p.F699F . . . UNC5B 219699 broad.mit.edu 36 10 72714517 72714517 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170744 exon3 c.G339A p.S113S . . . MRPS16 51021 broad.mit.edu 36 10 74680664 74680664 + Silent SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016065 exon3 c.T366A p.S122S . . . USP54 159195 broad.mit.edu 36 10 74946691 74946691 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152586 exon18 c.G3499A p.D1167N . . . KIAA0913 23053 broad.mit.edu 36 10 75227181 75227181 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015037 exon18 c.G3474A p.S1158S . . . PLAU 5328 broad.mit.edu 36 10 75345135 75345135 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002658 exon10 c.A1091G p.D364G . . . ITIH5 80760 broad.mit.edu 36 10 7645147 7645147 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030569 exon14 c.G2734A p.A912T . . . ITIH2 3698 broad.mit.edu 36 10 7809673 7809673 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002216 exon11 c.C1155T p.G385G . . . DLG5 9231 broad.mit.edu 36 10 79271767 79271767 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004747 exon7 c.C1315T p.R439C . . . TUBB8 347688 broad.mit.edu 36 10 84002 84002 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164154 exon4 c.G114T p.A38A . . . GRID1 2894 broad.mit.edu 36 10 87888585 87888585 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017551 exon4 c.C697A p.P233T . . . LARP4B 23185 broad.mit.edu 36 10 878986 878986 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015155 exon6 c.T532C p.Y178H . . . OPN4 94233 broad.mit.edu 36 10 88408242 88408242 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001030015 exon5 c.G479A p.C160Y . . . GLUD1 2746 broad.mit.edu 36 10 88803090 88803090 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005271 exon12 c.C1546T p.R516C . . . STAMBPL1 57559 broad.mit.edu 36 10 90658483 90658483 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020799 exon4 c.G293A p.C98Y . . . PCGF5 84333 broad.mit.edu 36 10 93001140 93001140 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032373 exon6 c.T437C p.L146S . . . BTAF1 9044 broad.mit.edu 36 10 93776478 93776478 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003972 exon36 c.G5225A p.R1742H . . . MYOF 26509 broad.mit.edu 36 10 95073085 95073085 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133337 exon46 c.G5253T p.V1751V . . . PDE6C 5146 broad.mit.edu 36 10 95370472 95370472 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006204 exon2 c.G574A p.A192T . . . PLCE1 51196 broad.mit.edu 36 10 96056207 96056207 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165979 exon25 c.A4732G p.S1578G . . . PDLIM1 9124 broad.mit.edu 36 10 97013714 97013714 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020992 exon4 c.T430C p.Y144H . . . TM9SF3 56889 broad.mit.edu 36 10 98276992 98276992 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020123 exon14 c.C1670T p.A557V . . . SLIT1 6585 broad.mit.edu 36 10 98797488 98797488 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003061 exon16 c.G1583T p.S528I . . . RRP12 23223 broad.mit.edu 36 10 99140233 99140233 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015179 exon6 c.C690T p.G230G . . . UBTD1 80019 broad.mit.edu 36 10 99320049 99320049 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024954 exon3 c.C463A p.L155M . . . ANKRD2 26287 broad.mit.edu 36 10 99328054 99328054 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020349 exon3 c.A338G p.Q113R . . . SLC25A28 81894 broad.mit.edu 36 10 101363463 101363463 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031212 exon2 c.500delG p.G167fs . . . ABCC2 1244 broad.mit.edu 36 10 101534452 101534452 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000392 exon2 c.131delC p.A44fs . . . TCF7L2 6934 broad.mit.edu 36 10 114839151 114839151 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146283 exon5 c.486delC p.S162fs . . . LIPA 3988 broad.mit.edu 36 10 90974927 90974927 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127605 exon6 c.577delA p.R193fs . . . HBE1 3046 broad.mit.edu 36 11 5247857 5247858 + De_novo_Start_OutOfFrame INS - T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . MMP1 4312 broad.mit.edu 36 11 102167392 102167392 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145938 exon8 c.T880C p.Y294H . . . KBTBD3 143879 broad.mit.edu 36 11 105429143 105429143 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152433 exon3 c.C1483A p.Q495K . . . ACAT1 38 broad.mit.edu 36 11 107522275 107522275 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000019 exon11 c.T1142C p.V381A . . . ZC3H12C 85463 broad.mit.edu 36 11 109541629 109541629 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033390 exon6 c.T2609G p.L870R . . . ARHGAP20 57569 broad.mit.edu 36 11 109959658 109959658 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020809 exon14 c.C1429G p.L477V . . . HTR3B 9177 broad.mit.edu 36 11 113318923 113318923 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006028 exon7 c.C706T p.R236C . . . PCSK7 9159 broad.mit.edu 36 11 116605415 116605415 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004716 exon3 c.C356T p.A119V . . . DSCAML1 57453 broad.mit.edu 36 11 116897282 116897282 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020693 exon6 c.G1166A p.G389D . . . DSCAML1 57453 broad.mit.edu 36 11 116900917 116900917 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020693 exon5 c.G930A p.S310S . . . CD3G 917 broad.mit.edu 36 11 117727577 117727577 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000073 exon5 c.C464T p.P155L . . . UBE4A 9354 broad.mit.edu 36 11 117751149 117751149 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004788 exon9 c.T1466C p.M489T . . . MLL 4297 broad.mit.edu 36 11 117897895 117897895 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005933 exon36 c.G11708A p.R3903H . . . FOXR1 283150 broad.mit.edu 36 11 118356434 118356434 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181721 exon5 c.G636A p.T212T . . . TRAPPC4 51399 broad.mit.edu 36 11 118394864 118394864 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016146 exon1 c.C149T p.A50V . . . HYOU1 10525 broad.mit.edu 36 11 118427833 118427833 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006389 exon12 c.G1246A p.A416T . . . VPS11 55823 broad.mit.edu 36 11 118454757 118454757 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021729 exon13 c.C2105A p.T702N . . . NLRX1 79671 broad.mit.edu 36 11 118559810 118559810 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170722 exon10 c.C2677T p.P893S . . . ARHGEF12 23365 broad.mit.edu 36 11 119797765 119797765 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198665 exon5 c.C285T p.I95I . . . TECTA 7007 broad.mit.edu 36 11 120505633 120505633 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005422 exon9 c.C2444T p.T815M . . . MUC5B 727897 broad.mit.edu 36 11 1225172 1225172 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002458 exon31 c.G10486A p.A3496T . . . MUC5B 727897 broad.mit.edu 36 11 1226200 1226200 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002458 exon31 c.C11514T p.T3838T . . . ZNF202 7753 broad.mit.edu 36 11 123105726 123105726 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003455 exon5 c.C420T p.H140H . . . OR4D5 219875 broad.mit.edu 36 11 123315543 123315543 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001965 exon1 c.G10T p.A4S . . . VWA5A 4013 broad.mit.edu 36 11 123517653 123517653 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014622 exon15 c.G2018A p.S673N . . . OR8B4 283162 broad.mit.edu 36 11 123799305 123799305 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005196 exon1 c.C673A p.L225I . . . STT3A 3703 broad.mit.edu 36 11 124987797 124987797 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152713 exon12 c.G1310A p.R437H . . . TIRAP 114609 broad.mit.edu 36 11 125668210 125668210 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148910 exon5 c.T696C p.S232S . . . ST14 6768 broad.mit.edu 36 11 129573673 129573673 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021978 exon14 c.G1631A p.C544Y . . . VPS26B 112936 broad.mit.edu 36 11 133610045 133610045 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052875 exon2 c.G268A p.V90M . . . GLB1L2 89944 broad.mit.edu 36 11 133734194 133734194 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138342 exon7 c.C682A p.L228I . . . CALCA 796 broad.mit.edu 36 11 14947067 14947067 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001741 exon4 c.G280T p.G94C . . . ABCC8 6833 broad.mit.edu 36 11 17385569 17385569 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000352 exon24 c.T2828A p.V943D . . . SERGEF 26297 broad.mit.edu 36 11 17973967 17973967 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012139 exon6 c.C574A p.Q192K . . . E2F8 79733 broad.mit.edu 36 11 19212942 19212942 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024680 exon5 c.A691G p.I231V . . . SLC6A5 9152 broad.mit.edu 36 11 20615352 20615352 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004211 exon12 c.G1796A p.R599H . . . FANCF 2188 broad.mit.edu 36 11 22603126 22603126 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022725 exon1 c.G807A p.A269A . . . LGR4 55366 broad.mit.edu 36 11 27346509 27346509 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018490 exon18 c.C2337T p.P779P . . . KIF18A 81930 broad.mit.edu 36 11 28055257 28055257 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031217 exon10 c.G1298A p.R433Q . . . MPPED2 744 broad.mit.edu 36 11 30514262 30514262 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001584 exon2 c.G165A p.A55A . . . IFITM3 10410 broad.mit.edu 36 11 310793 310793 + Silent SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021034 exon1 c.C21A p.T7T . . . C11orf41 25758 broad.mit.edu 36 11 33636988 33636988 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012194 exon18 c.C5084T p.T1695M . . . FBXO3 26273 broad.mit.edu 36 11 33720040 33720040 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012175 exon11 c.G1406A p.R469H . . . TRAF6 7189 broad.mit.edu 36 11 36475383 36475383 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145803 exon5 c.G457T p.A153S . . . NUP98 4928 broad.mit.edu 36 11 3673283 3673283 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139132 exon26 c.G4139A p.R1380H . . . LRRC4C 57689 broad.mit.edu 36 11 40094236 40094236 + Silent SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020929 exon2 c.T183A p.I61I . . . API5 8539 broad.mit.edu 36 11 43301724 43301724 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142930 exon6 c.C712T p.L238F . . . OR52K2 119774 broad.mit.edu 36 11 4427800 4427800 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005172 exon1 c.T655A p.S219T . . . PRDM11 56981 broad.mit.edu 36 11 45161163 45161163 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020229 exon5 c.C501T p.N167N . . . CHST1 8534 broad.mit.edu 36 11 45628591 45628591 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003654 exon4 c.C459T p.R153R . . . TRIM68 55128 broad.mit.edu 36 11 4583013 4583013 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018073 exon2 c.C298T p.R100C . . . PHF21A 51317 broad.mit.edu 36 11 45943507 45943507 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101802 exon9 c.A928G p.T310A . . . ACP2 53 broad.mit.edu 36 11 47220999 47220999 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001610 exon10 c.G989A p.R330Q . . . MADD 8567 broad.mit.edu 36 11 47304884 47304884 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003682 exon34 c.A4742G p.H1581R . . . NUP160 23279 broad.mit.edu 36 11 47818086 47818086 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015231 exon4 c.T633C p.S211S . . . OR4C46 119749 broad.mit.edu 36 11 51371988 51371988 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004703 exon1 c.T131G p.V44G . . . OR51I2 390064 broad.mit.edu 36 11 5431353 5431353 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004754 exon1 c.T59G p.L20R . . . OR4C11 219429 broad.mit.edu 36 11 55128106 55128106 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004700 exon1 c.G320A p.C107Y . . . OR5D14 219436 broad.mit.edu 36 11 55320011 55320011 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004735 exon1 c.C404A p.T135K . . . P2RX3 5024 broad.mit.edu 36 11 56892099 56892099 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002559 exon9 c.C883T p.R295C . . . OR5B21 219968 broad.mit.edu 36 11 58031787 58031787 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005218 exon1 c.C368T p.A123V . . . DTX4 23220 broad.mit.edu 36 11 58716154 58716154 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015177 exon6 c.C1229T p.T410I . . . OR10V1 390201 broad.mit.edu 36 11 59237313 59237313 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005324 exon1 c.C582T p.R194R . . . AHNAK 79026 broad.mit.edu 36 11 62044361 62044361 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001620 exon5 c.G14104A p.A4702T . . . AHNAK 79026 broad.mit.edu 36 11 62051245 62051245 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001620 exon5 c.A7220G p.D2407G . . . EML3 256364 broad.mit.edu 36 11 62129194 62129194 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153265 exon16 c.G1949T p.G650V . . . B3GAT3 26229 broad.mit.edu 36 11 62140764 62140764 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012200 exon4 c.C699T p.D233D . . . BSCL2 26580 broad.mit.edu 36 11 62226557 62226557 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130702 exon4 c.C445T p.P149S . . . ZBTB3 79842 broad.mit.edu 36 11 62277334 62277334 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024784 exon2 c.G529A p.A177T . . . CHRM1 1128 broad.mit.edu 36 11 62434000 62434000 + Silent SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000738 exon2 c.C1149A p.I383I . . . PRKCDBP 112464 broad.mit.edu 36 11 6297190 6297190 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145040 exon2 c.C565A p.L189I . . . APBB1 322 broad.mit.edu 36 11 6379907 6379907 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164 exon8 c.G1363A p.V455I . . . ESRRA 2101 broad.mit.edu 36 11 63839208 63839208 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004451 exon6 c.G902A p.G301D . . . SLC22A11 55867 broad.mit.edu 36 11 64092785 64092785 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018484 exon8 c.C1341A p.C447X . . . TRIM3 10612 broad.mit.edu 36 11 6436045 6436045 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006458 exon4 c.G189A p.R63R . . . ZFPL1 7542 broad.mit.edu 36 11 64612154 64612154 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006782 exon8 c.C925A p.P309T . . . SIPA1 6494 broad.mit.edu 36 11 65173827 65173827 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006747 exon12 c.C2661T p.G887G . . . KLC2 64837 broad.mit.edu 36 11 65788225 65788225 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134775 exon8 c.G1075A p.G359R . . . B3GNT1 11041 broad.mit.edu 36 11 65870281 65870281 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006876 exon2 c.G1063A p.E355K . . . NPAS4 266743 broad.mit.edu 36 11 65947887 65947887 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178864 exon7 c.T950C p.M317T . . . PC 5091 broad.mit.edu 36 11 66374158 66374158 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040716 exon20 c.G2724A p.T908T . . . KDM2A 22992 broad.mit.edu 36 11 66731659 66731659 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012308 exon6 c.G410A p.R137Q . . . RPS6KB2 6199 broad.mit.edu 36 11 66957054 66957054 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003952 exon8 c.C672T p.A224A . . . NDUFV1 4723 broad.mit.edu 36 11 67135965 67135965 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166102 exon8 c.G1075A p.A359T . . . ALDH3B1 221 broad.mit.edu 36 11 67545689 67545689 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001030010 exon6 c.G611A p.G204D . . . TPCN2 219931 broad.mit.edu 36 11 68610640 68610640 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139075 exon23 c.A2077G p.I693V . . . OR2D3 120775 broad.mit.edu 36 11 6899415 6899415 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004684 exon1 c.C607A p.L203M . . . FOLR3 2352 broad.mit.edu 36 11 71528404 71528404 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000804 exon5 c.G617A p.R206Q . . . UCP3 7352 broad.mit.edu 36 11 73393218 73393218 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022803 exon5 c.A602G p.D201G . . . POLD3 10714 broad.mit.edu 36 11 74008723 74008723 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006591 exon7 c.G674A p.G225D . . . OR2AT4 341152 broad.mit.edu 36 11 74477695 74477695 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005285 exon1 c.G712T p.G238X . . . RPS3 6188 broad.mit.edu 36 11 74790382 74790382 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005 exon3 c.C212A p.A71D . . . SERPINH1 871 broad.mit.edu 36 11 74957732 74957732 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001235 exon4 c.C822T p.H274H . . . C11orf30 56946 broad.mit.edu 36 11 75926549 75926549 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020193 exon16 c.C2422T p.P808S . . . INTS4 92105 broad.mit.edu 36 11 77280104 77280104 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033547 exon21 c.C2501A p.P834H . . . ODZ4 26011 broad.mit.edu 36 11 78047287 78047287 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098816 exon34 c.C7774T p.R2592X . . . DLG2 1740 broad.mit.edu 36 11 83319091 83319091 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001364 exon10 c.A1109G p.D370G . . . TMEM126B 55863 broad.mit.edu 36 11 85024792 85024792 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193537 exon6 c.G504A p.T168T . . . CTSC 1075 broad.mit.edu 36 11 87685274 87685274 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001814 exon3 c.G415A p.G139R . . . MMP10 4319 broad.mit.edu 36 11 102154676 102154677 + Frame_Shift_Del DEL AA - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 AA AA AA - AA AA Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002425 exon4 c.510_511del p.170_171del . . . LAYN 143903 broad.mit.edu 36 11 110931201 110931201 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178834 exon5 c.634delA p.K212fs . . . C11orf57 55216 broad.mit.edu 36 11 111458670 111458670 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001082969 exon6 c.646delA p.K216fs . . . TMEM25 84866 broad.mit.edu 36 11 117908170 117908170 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144037 exon3 c.166delG p.G56fs . . . CCDC15 80071 broad.mit.edu 36 11 124350259 124350259 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025004 exon5 c.574delA p.K192fs . . . TMEM218 219854 broad.mit.edu 36 11 124477245 124477245 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080546 exon2 c.103delG p.A35fs . . . KCNA4 3739 broad.mit.edu 36 11 29989516 29989516 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002233 exon2 c.1286delG p.G429fs . . . QSER1 79832 broad.mit.edu 36 11 32910898 32910898 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001076786 exon4 c.1131delT p.T377fs . . . DEPDC7 91614 broad.mit.edu 36 11 33010908 33010908 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_139160 exon7 c.1229delT p.V410fs . . . OR52M1 119772 broad.mit.edu 36 11 4523183 4523183 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004137 exon1 c.187delT p.F63fs . . . LRP4 4038 broad.mit.edu 36 11 46878423 46878425 + In_Frame_Del DEL GTT - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 GTT GTT GTT - GTT GTT Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002334 exon3 c.280_282del p.94_94del . . . CPSF7 79869 broad.mit.edu 36 11 60940225 60940225 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136040 exon6 c.893delC p.P298fs . . . DLG2 1740 broad.mit.edu 36 11 82930392 82930392 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001142700 exon12 c.1474delG p.V492fs . . . AP2A2 161 broad.mit.edu 36 11 960195 960195 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012305 exon3 c.163delA p.K55fs . . . NFE2 4778 broad.mit.edu 36 12 52972796 52972797 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006163 exon3 c.751_752insT p.N251_E252delinsX . . . GNPTAB 79158 broad.mit.edu 36 12 100682470 100682470 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024312 exon13 c.C2356T p.Q786X . . . KIAA1033 23325 broad.mit.edu 36 12 104062679 104062679 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015275 exon22 c.C2233A p.L745I . . . CRY1 1407 broad.mit.edu 36 12 105917554 105917554 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004075 exon7 c.C1042T p.R348C . . . CRY1 1407 broad.mit.edu 36 12 105917953 105917953 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004075 exon6 c.C722T p.A241V . . . FICD 11153 broad.mit.edu 36 12 107436333 107436333 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007076 exon3 c.C328T p.L110L . . . SART3 9733 broad.mit.edu 36 12 107478791 107478791 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014706 exon1 c.G270A p.E90E . . . TCHP 84260 broad.mit.edu 36 12 108831100 108831100 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143852 exon8 c.G854A p.R285H . . . CUX2 23316 broad.mit.edu 36 12 110264215 110264215 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015267 exon21 c.G3634A p.V1212I . . . ATXN2 6311 broad.mit.edu 36 12 110392364 110392364 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002973 exon20 c.G3247A p.A1083T . . . DDX54 79039 broad.mit.edu 36 12 112088092 112088092 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024072 exon13 c.G1543A p.A515T . . . DDX54 79039 broad.mit.edu 36 12 112092013 112092013 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024072 exon12 c.G1359A p.L453L . . . DDX54 79039 broad.mit.edu 36 12 112094627 112094627 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024072 exon11 c.C1193T p.A398V . . . C12orf52 84934 broad.mit.edu 36 12 112113578 112113578 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032848 exon4 c.G383A p.R128Q . . . IQCD 115811 broad.mit.edu 36 12 112130306 112130306 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138451 exon2 c.A49G p.I17V . . . RBM19 9904 broad.mit.edu 36 12 112864534 112864534 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016196 exon14 c.T1715C p.V572A . . . RBM19 9904 broad.mit.edu 36 12 112880151 112880151 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016196 exon6 c.C659T p.S220L . . . SRRM4 84530 broad.mit.edu 36 12 118039189 118039189 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194286 exon4 c.C430T p.R144X . . . PRKAB1 5564 broad.mit.edu 36 12 118594554 118594554 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006253 exon2 c.C225A p.A75A . . . CIT 11113 broad.mit.edu 36 12 118695051 118695051 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007174 exon17 c.G1988A p.R663H . . . GCN1L1 10985 broad.mit.edu 36 12 119082145 119082145 + Silent SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006836 exon24 c.C2616A p.G872G . . . ANAPC5 51433 broad.mit.edu 36 12 120257899 120257899 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001137559 exon7 c.G473A p.S158N . . . KDM2B 84678 broad.mit.edu 36 12 120498129 120498129 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032590 exon3 c.T290C p.V97A . . . DIABLO 56616 broad.mit.edu 36 12 121275028 121275028 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138929 exon3 c.C167T p.A56V . . . LRP6 4040 broad.mit.edu 36 12 12224115 12224115 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002336 exon7 c.C1441T p.R481C . . . SBNO1 55206 broad.mit.edu 36 12 122379381 122379381 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018183 exon9 c.A1146C p.K382N . . . LOH12CR1 118426 broad.mit.edu 36 12 12509876 12509876 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058169 exon4 c.G490A p.D164N . . . TMEM132D 121256 broad.mit.edu 36 12 128125325 128125325 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133448 exon9 c.A2348C p.K783T . . . TMEM132D 121256 broad.mit.edu 36 12 128751132 128751132 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133448 exon2 c.C144T p.P48P . . . EP400 57634 broad.mit.edu 36 12 131096048 131096048 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015409 exon38 c.C7013T p.A2338V . . . PLBD1 79887 broad.mit.edu 36 12 14597552 14597552 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024829 exon2 c.A177G p.V59V . . . RERG 85004 broad.mit.edu 36 12 15153348 15153348 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032918 exon5 c.A563G p.Q188R . . . PTPRO 5800 broad.mit.edu 36 12 15528228 15528228 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002848 exon2 c.A129G p.S43S . . . PYROXD1 79912 broad.mit.edu 36 12 21512711 21512711 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024854 exon12 c.T1259C p.V420A . . . CMAS 55907 broad.mit.edu 36 12 22105099 22105099 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018686 exon5 c.T760C p.W254R . . . KRAS 3845 broad.mit.edu 36 12 25271544 25271545 + Missense_Mutation DNP GA TT TT novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 GA GA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004985 exon3 c.180_181AA . KRAS,thyroid,NS,Substitution - Missense,+1 . . CACNA1C 775 broad.mit.edu 36 12 2659122 2659122 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129842 exon42 c.C5343T p.P1781P . . . PPFIBP1 8496 broad.mit.edu 36 12 27717980 27717980 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198915 exon14 c.C925T p.Q309X . . . TEAD4 7004 broad.mit.edu 36 12 3001280 3001280 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003213 exon10 c.C733T p.H245Y . . . FGD4 121512 broad.mit.edu 36 12 32626443 32626443 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139241 exon4 c.G375A p.T125T . . . PKP2 5318 broad.mit.edu 36 12 32846651 32846651 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004572 exon11 c.C2252T p.S751L . . . ALG10B 144245 broad.mit.edu 36 12 37000666 37000666 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013620 exon3 c.T806C p.V269A . . . CNTN1 1272 broad.mit.edu 36 12 39624071 39624071 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175038 exon13 c.G1482A p.T494T . . . PDZRN4 29951 broad.mit.edu 36 12 40253817 40253817 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164595 exon10 c.T2969G p.L990R . . . GXYLT1 283464 broad.mit.edu 36 12 40777637 40777637 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173601 exon7 c.T1035C p.H345H . . . C12orf5 57103 broad.mit.edu 36 12 4330765 4330765 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020375 exon5 c.C342T p.C114C . . . NELL2 4753 broad.mit.edu 36 12 43345538 43345538 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145108 exon13 c.T1440C p.C480C . . . ARID2 196528 broad.mit.edu 36 12 44516943 44516943 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152641 exon8 c.A925G p.N309D . . . SLC38A2 54407 broad.mit.edu 36 12 45041230 45041230 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018976 exon16 c.G1452A p.L484L . . . AMIGO2 347902 broad.mit.edu 36 12 45757508 45757508 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181847 exon2 c.C1545T p.D515D . . . FAM113B 91523 broad.mit.edu 36 12 45916221 45916221 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138371 exon2 c.G1108T p.E370X . . . RPAP3 79657 broad.mit.edu 36 12 46359559 46359559 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146076 exon11 c.C794T p.P265L . . . ENDOU 8909 broad.mit.edu 36 12 46405415 46405415 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172439 exon1 c.T49A p.W17R . . . OR8S1 341568 broad.mit.edu 36 12 47206155 47206155 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005203 exon1 c.C474A p.I158I . . . RND1 27289 broad.mit.edu 36 12 47541065 47541065 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014470 exon4 c.G435A p.A145A . . . MLL2 8085 broad.mit.edu 36 12 47721315 47721315 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003482 exon31 c.G6505A p.A2169T . . . MLL2 8085 broad.mit.edu 36 12 47726207 47726207 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003482 exon17 c.G4601A p.C1534Y . . . MLL2 8085 broad.mit.edu 36 12 47730204 47730204 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003482 exon11 c.C3434A p.A1145D . . . RHEBL1 121268 broad.mit.edu 36 12 47745172 47745172 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144593 exon8 c.G533A p.R178H . . . KCNH3 23416 broad.mit.edu 36 12 48237601 48237601 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012284 exon15 c.G2850A p.Q950Q . . . SMARCD1 6602 broad.mit.edu 36 12 48770445 48770445 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139071 exon8 c.T1028C p.L343P . . . LIMA1 51474 broad.mit.edu 36 12 48857628 48857628 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001113546 exon11 c.G1769A p.R590H . . . KCNA1 3736 broad.mit.edu 36 12 4890899 4890899 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000217 exon2 c.G94C p.D32H . . . DIP2B 57609 broad.mit.edu 36 12 49394526 49394526 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173602 exon23 c.G2731T p.G911X . . . SLC4A8 9498 broad.mit.edu 36 12 50140146 50140146 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039960 exon8 c.C1000T p.P334S . . . KCNA5 3741 broad.mit.edu 36 12 5024440 5024440 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002234 exon1 c.A866G p.H289R . . . KRT83 3889 broad.mit.edu 36 12 50999336 50999336 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002282 exon2 c.A464G p.N155S . . . KRT83 3889 broad.mit.edu 36 12 51001207 51001207 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002282 exon1 c.C180T p.R60R . . . KRT85 3891 broad.mit.edu 36 12 51041062 51041062 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002283 exon9 c.G1366A p.G456S . . . KRT84 3890 broad.mit.edu 36 12 51060510 51060510 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033045 exon7 c.G1328T p.R443L . . . KRT6B 3854 broad.mit.edu 36 12 51128940 51128940 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005555 exon6 c.C1156T p.R386C . . . AMHR2 269 broad.mit.edu 36 12 52105911 52105911 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164691 exon6 c.C793T p.R265W . . . SMUG1 23583 broad.mit.edu 36 12 52863990 52863990 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014311 exon3 c.T2C p.M1T . . . ITGA7 3679 broad.mit.edu 36 12 54380335 54380335 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144997 exon5 c.G489A p.P163P . . . GDF11 10220 broad.mit.edu 36 12 54428840 54428840 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005811 exon2 c.C649T p.R217C . . . NTF3 4908 broad.mit.edu 36 12 5473678 5473678 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102654 exon2 c.C76A p.L26I . . . ERBB3 2065 broad.mit.edu 36 12 54768112 54768112 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001982 exon7 c.G773A p.R258H . . . TIMELESS 8914 broad.mit.edu 36 12 55112533 55112533 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003920 exon7 c.G574T p.A192S . . . NACA 4666 broad.mit.edu 36 12 55393142 55393142 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001113203 exon7 c.A6070C p.T2024P . . . MYO1A 4640 broad.mit.edu 36 12 55718918 55718918 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005379 exon16 c.G1475A p.R492H . . . LRP1 4035 broad.mit.edu 36 12 55857231 55857231 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002332 exon25 c.C4132T p.R1378W . . . LRP1 4035 broad.mit.edu 36 12 55890831 55890831 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002332 exon83 c.C12818T p.A4273V . . . MARS 4141 broad.mit.edu 36 12 56192877 56192877 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004990 exon15 c.G1830A p.T610T . . . VWF 7450 broad.mit.edu 36 12 5955657 5955657 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000552 exon43 c.G7318A p.V2440M . . . SRGAP1 57522 broad.mit.edu 36 12 62664108 62664108 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020762 exon2 c.C182T p.T61M . . . CD27 939 broad.mit.edu 36 12 6430721 6430721 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001242 exon6 c.G685A p.A229T . . . HELB 92797 broad.mit.edu 36 12 65011246 65011246 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033647 exon12 c.C2716T p.R906C . . . ACRBP 84519 broad.mit.edu 36 12 6623676 6623676 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032489 exon5 c.A832G p.T278A . . . DYRK2 8445 broad.mit.edu 36 12 66337377 66337377 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003583 exon2 c.G204A p.K68K . . . CPSF6 11052 broad.mit.edu 36 12 67942595 67942595 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007007 exon9 c.C1645T p.R549C . . . CD4 920 broad.mit.edu 36 12 6795431 6795431 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001195014 exon4 c.C19T p.H7Y . . . GPR162 27239 broad.mit.edu 36 12 6803744 6803744 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019858 exon2 c.G419A p.G140D . . . EMG1 10436 broad.mit.edu 36 12 6954659 6954659 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006331 exon5 c.A478G p.R160G . . . TRHDE 29953 broad.mit.edu 36 12 71149898 71149898 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013381 exon4 c.T1274C p.V425A . . . CD163L1 283316 broad.mit.edu 36 12 7442377 7442377 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174941 exon7 c.C1479T p.Y493Y . . . ZDHHC17 23390 broad.mit.edu 36 12 75723278 75723278 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015336 exon3 c.T248C p.V83A . . . E2F7 144455 broad.mit.edu 36 12 75961029 75961029 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203394 exon7 c.G1070A p.R357Q . . . SLC2A14 144195 broad.mit.edu 36 12 7858363 7858363 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153449 exon12 c.C1379T p.T460I . . . MYF6 4618 broad.mit.edu 36 12 79625776 79625776 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002469 exon1 c.C147T p.P49P . . . MYF5 4617 broad.mit.edu 36 12 79635206 79635206 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005593 exon1 c.A233G p.K78R . . . TSPAN19 144448 broad.mit.edu 36 12 83941260 83941260 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100917 exon5 c.C314T p.A105V . . . M6PR 4074 broad.mit.edu 36 12 8985749 8985749 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002355 exon7 c.C766T p.R256C . . . A2M 2 broad.mit.edu 36 12 9121633 9121633 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000014 exon26 c.G3207A p.W1069X . . . A2M 2 broad.mit.edu 36 12 9137438 9137438 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000014 exon18 c.A2130G p.S710S . . . NDUFA12 55967 broad.mit.edu 36 12 93889495 93889495 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018838 exon4 c.C290A p.P97H . . . USP44 84101 broad.mit.edu 36 12 94451337 94451337 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042403 exon2 c.G827A p.R276K . . . AMDHD1 144193 broad.mit.edu 36 12 94874742 94874742 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152435 exon4 c.T458C p.V153A . . . PWP1 11137 broad.mit.edu 36 12 106610920 106610920 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007062 exon5 c.419delG p.R140fs . . . SSH1 54434 broad.mit.edu 36 12 107718786 107718786 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161331 exon11 c.1080delT p.F360fs . . . FBXO21 23014 broad.mit.edu 36 12 116108703 116108703 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015002 exon3 c.432delT p.F144fs . . . MLXIP 22877 broad.mit.edu 36 12 121184138 121184138 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014938 exon9 c.1383delC p.N461fs . . . DNAH10 196385 broad.mit.edu 36 12 122945187 122945187 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207437 exon53 c.8890delC p.P2964fs . . . RIMBP2 23504 broad.mit.edu 36 12 129478717 129478717 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015347 exon12 c.2321delG p.G774fs . . . CEP290 80184 broad.mit.edu 36 12 87002542 87002542 + Frame_Shift_Del DEL T - - rs62640572 unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025114 exon35 c.4656delA p.K1552fs . . . MYO16 23026 broad.mit.edu 36 13 108577805 108577805 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198950 exon31 c.G3957A p.P1319P . . . COL4A1 1282 broad.mit.edu 36 13 109616595 109616595 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001845 exon45 c.G4006A p.V1336I . . . COL4A2 1284 broad.mit.edu 36 13 109954252 109954252 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001846 exon44 c.T4196C p.V1399A . . . CARS2 79587 broad.mit.edu 36 13 110155872 110155872 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024537 exon2 c.C272A p.A91D . . . MCF2L 23263 broad.mit.edu 36 13 112792041 112792041 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024979 exon26 c.A2963G p.K988R . . . SPATA13 221178 broad.mit.edu 36 13 23761160 23761160 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166271 exon8 c.G2691A p.K897K . . . ATP12A 479 broad.mit.edu 36 13 24170901 24170901 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185085 exon12 c.G1636A p.G546S . . . CENPJ 55835 broad.mit.edu 36 13 24355330 24355330 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018451 exon17 c.G4002T p.M1334I . . . FAM123A 219287 broad.mit.edu 36 13 24642073 24642073 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152704 exon1 c.C1685T p.P562L . . . ATP8A2 51761 broad.mit.edu 36 13 25171408 25171408 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016529 exon25 c.A2309C p.K770T . . . ATP8A2 51761 broad.mit.edu 36 13 25247060 25247060 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016529 exon27 c.A2642G p.Y881C . . . GPR12 2835 broad.mit.edu 36 13 26231613 26231613 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005288 exon2 c.G352A p.G118S . . . PDS5B 23047 broad.mit.edu 36 13 32225626 32225626 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015032 exon25 c.A2893G p.N965D . . . KL 9365 broad.mit.edu 36 13 32533103 32533103 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004795 exon4 c.C1887T p.V629V . . . SOHLH2 54937 broad.mit.edu 36 13 35646935 35646935 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017826 exon7 c.C713T p.A238V . . . TRPC4 7223 broad.mit.edu 36 13 37218306 37218306 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135957 exon3 c.A665G p.Q222R . . . FREM2 341640 broad.mit.edu 36 13 38161381 38161381 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207361 exon1 c.G1900A p.A634T . . . MED4 29079 broad.mit.edu 36 13 47553811 47553811 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014166 exon5 c.C479A p.A160D . . . CDADC1 81602 broad.mit.edu 36 13 48746471 48746471 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030911 exon6 c.G1044A p.G348G . . . FAM124A 220108 broad.mit.edu 36 13 50752855 50752855 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145019 exon5 c.C1211T p.T404M . . . CKAP2 26586 broad.mit.edu 36 13 51947043 51947043 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098525 exon9 c.G1818A p.K606K . . . PCDH17 27253 broad.mit.edu 36 13 57105251 57105251 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040429 exon1 c.C570A p.T190T . . . PCDH20 64881 broad.mit.edu 36 13 60884526 60884526 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022843 exon2 c.A1707C p.Q569H . . . PCDH9 5101 broad.mit.edu 36 13 66103437 66103437 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020403 exon3 c.C3144T p.H1048H . . . TBC1D4 9882 broad.mit.edu 36 13 74771656 74771656 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014832 exon17 c.G2967T p.L989L . . . LMO7 4008 broad.mit.edu 36 13 75306488 75306488 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015842 exon14 c.C2491T p.H831Y . . . LMO7 4008 broad.mit.edu 36 13 75313259 75313259 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015842 exon20 c.G2897A p.R966H . . . STK24 8428 broad.mit.edu 36 13 97916655 97916655 + Silent SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003576 exon6 c.C795A p.A265A . . . GPR183 1880 broad.mit.edu 36 13 98746042 98746042 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004951 exon2 c.A359G p.N120S . . . CLYBL 171425 broad.mit.edu 36 13 99341591 99341591 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206808 exon8 c.G946T p.G316W . . . SDR39U1 56948 broad.mit.edu 36 14 23979516 23979517 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020195 exon6 c.495_496insG p.G165fs . . . AHNAK2 113146 broad.mit.edu 36 14 104479663 104479663 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138420 exon7 c.G13170T p.K4390N . . . AHNAK2 113146 broad.mit.edu 36 14 104489958 104489958 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138420 exon7 c.G2875C p.V959L . . . BRF1 2972 broad.mit.edu 36 14 104823701 104823701 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001519 exon2 c.C242T p.S81L . . . RNASE9 390443 broad.mit.edu 36 14 20094918 20094918 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001110357 exon3 c.T151A p.F51I . . . RNASE4 6038 broad.mit.edu 36 14 20237761 20237761 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002937 exon2 c.G391A p.V131I . . . NDRG2 57447 broad.mit.edu 36 14 20560407 20560407 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016250 exon4 c.C165T p.H55H . . . ARHGEF40 55701 broad.mit.edu 36 14 20613435 20613435 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018071 exon4 c.T1555C p.S519P . . . RPGRIP1 57096 broad.mit.edu 36 14 20866495 20866495 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020366 exon18 c.G2968A p.G990R . . . CDH24 64403 broad.mit.edu 36 14 22594402 22594402 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022478 exon3 c.C202T p.L68L . . . RNF31 55072 broad.mit.edu 36 14 23690865 23690865 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017999 exon11 c.G1954A p.A652T . . . TINF2 26277 broad.mit.edu 36 14 23779735 23779735 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012461 exon6 c.G791A p.G264D . . . FOXG1 2290 broad.mit.edu 36 14 28307056 28307056 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005249 exon1 c.C820T p.R274W . . . STRN3 29966 broad.mit.edu 36 14 30451014 30451014 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014574 exon9 c.G1248T p.E416D . . . RALGAPA1 253959 broad.mit.edu 36 14 35299795 35299795 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194301 exon6 c.C538A p.L180I . . . CTAGE5 4253 broad.mit.edu 36 14 38884932 38884932 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203354 exon21 c.T1869C p.S623S . . . FAM179B 23116 broad.mit.edu 36 14 44550986 44550986 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015091 exon7 c.A3196G p.K1066E . . . SOS2 6655 broad.mit.edu 36 14 49675200 49675200 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006939 exon18 c.A2838T p.L946F . . . NIN 51199 broad.mit.edu 36 14 50329217 50329217 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182944 exon5 c.C398T p.A133V . . . FBXO34 55030 broad.mit.edu 36 14 54887820 54887820 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152231 exon2 c.G959A p.S320N . . . TOMM20L 387990 broad.mit.edu 36 14 57943893 57943893 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207377 exon4 c.C359A p.P120H . . . SLC38A6 145389 broad.mit.edu 36 14 60521224 60521224 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153811 exon3 c.T260C p.L87P . . . TMEM30B 161291 broad.mit.edu 36 14 60816726 60816726 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017970 exon1 c.G893A p.G298D . . . HSPA2 3306 broad.mit.edu 36 14 64078131 64078131 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021979 exon1 c.G811A p.E271K . . . SLC10A1 6554 broad.mit.edu 36 14 69333542 69333542 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003049 exon1 c.C84T p.S28S . . . SIPA1L1 26037 broad.mit.edu 36 14 71266728 71266728 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015556 exon18 c.G4881A p.P1627P . . . HEATR4 399671 broad.mit.edu 36 14 73057411 73057411 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203309 exon3 c.C826A p.L276I . . . ABCD4 5826 broad.mit.edu 36 14 73832323 73832323 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005050 exon6 c.G655T p.E219X . . . YLPM1 56252 broad.mit.edu 36 14 74345958 74345958 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019589 exon7 c.A4644G p.P1548P . . . FAM164C 79696 broad.mit.edu 36 14 74608085 74608085 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024643 exon2 c.G1056A p.P352P . . . C14orf179 112752 broad.mit.edu 36 14 75612729 75612729 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052873 exon4 c.C252T p.N84N . . . SPTLC2 9517 broad.mit.edu 36 14 77091551 77091551 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004863 exon8 c.T1021C p.L341L . . . SNW1 22938 broad.mit.edu 36 14 77259355 77259355 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012245 exon11 c.A1052C p.E351A . . . FLRT2 23768 broad.mit.edu 36 14 85158154 85158154 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013231 exon2 c.C543A p.D181E . . . FLRT2 23768 broad.mit.edu 36 14 85159120 85159120 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013231 exon2 c.G1509A p.A503A . . . NDUFB1 4707 broad.mit.edu 36 14 91657798 91657798 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004545 exon1 c.C77T p.A26V . . . LGMN 5641 broad.mit.edu 36 14 92248019 92248019 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008530 exon10 c.G645A p.S215S . . . UBR7 55148 broad.mit.edu 36 14 92755338 92755338 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100417 exon7 c.G610A p.A204T . . . KIAA1409 57578 broad.mit.edu 36 14 93209546 93209546 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020818 exon42 c.C6319T p.L2107F . . . KIAA1409 57578 broad.mit.edu 36 14 93224790 93224790 + Silent SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020818 exon45 c.T6522G p.P2174P . . . SERPINA6 866 broad.mit.edu 36 14 93845865 93845865 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001756 exon3 c.G845A p.R282Q SERPINA6,skin,NS,Substitution - Missense,0 . . SERPINA5 5104 broad.mit.edu 36 14 94123533 94123533 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000624 exon3 c.G81T p.M27I . . . BDKRB2 624 broad.mit.edu 36 14 95776659 95776659 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000623 exon3 c.G241A p.V81I . . . AP1G2 8906 broad.mit.edu 36 14 23100665 23100665 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003917 exon18 c.1753delA p.M585fs . . . ATL1 51062 broad.mit.edu 36 14 50157087 50157087 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181598 exon9 c.883delA p.K295fs . . . RHOJ 57381 broad.mit.edu 36 14 62827407 62827407 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020663 exon5 c.557delT p.V186fs . . . CLMN 79789 broad.mit.edu 36 14 94732702 94732702 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024734 exon10 c.2594delA p.K865fs . . . MIR323 442897 broad.mit.edu 36 14 100561891 100561891 + RNA SNP C G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . CYFIP1 23191 broad.mit.edu 36 15 20505713 20505713 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014608 exon14 c.C1422T p.H474H . . . MAGEL2 54551 broad.mit.edu 36 15 21441109 21441109 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_019066 exon1 c.G2874T p.W958C . . . UBE3A 7337 broad.mit.edu 36 15 23152934 23152934 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130839 exon8 c.C1956T p.H652H . . . UBE3A 7337 broad.mit.edu 36 15 23167766 23167766 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130839 exon6 c.G648A p.Q216Q . . . ATP10A 57194 broad.mit.edu 36 15 23510457 23510457 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024490 exon10 c.T1801G p.S601A . . . GABRB3 2562 broad.mit.edu 36 15 24363956 24363956 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021912 exon7 c.T700A p.S234T . . . GABRA5 2558 broad.mit.edu 36 15 24679677 24679677 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165037 exon6 c.G377A p.S126N . . . RYR3 6263 broad.mit.edu 36 15 31811027 31811027 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon48 c.C7264T p.L2422F . . . RYR3 6263 broad.mit.edu 36 15 31933929 31933929 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon97 c.T13847C p.V4616A . . . THBS1 7057 broad.mit.edu 36 15 37663587 37663587 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003246 exon5 c.C810T p.C270C . . . THBS1 7057 broad.mit.edu 36 15 37673595 37673595 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003246 exon20 c.C3271T p.R1091C . . . PLCB2 5330 broad.mit.edu 36 15 38370283 38370283 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004573 exon28 c.G3084T p.E1028D . . . C15orf52 388115 broad.mit.edu 36 15 38418275 38418275 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207380 exon4 c.T485C p.V162A . . . CHAC1 79094 broad.mit.edu 36 15 39035142 39035142 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001142776 exon4 c.G538A p.A180T . . . MGA 23269 broad.mit.edu 36 15 39776381 39776381 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164273 exon3 c.A1881G p.R627R . . . MGA 23269 broad.mit.edu 36 15 39834044 39834044 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164273 exon18 c.T7126C p.S2376P . . . TTBK2 146057 broad.mit.edu 36 15 40854670 40854670 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173500 exon13 c.G1953A p.T651T . . . TP53BP1 7158 broad.mit.edu 36 15 41511738 41511738 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005657 exon17 c.T3606C p.S1202S . . . WDR76 79968 broad.mit.edu 36 15 41930701 41930701 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167941 exon9 c.G965A p.R322H . . . SLC28A2 9153 broad.mit.edu 36 15 43347868 43347868 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004212 exon13 c.G1368T p.Q456H . . . MYEF2 50804 broad.mit.edu 36 15 46246854 46246854 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016132 exon3 c.C407T p.A136V . . . FBN1 2200 broad.mit.edu 36 15 46588173 46588173 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000138 exon15 c.A1735G p.R579G . . . TRPM7 54822 broad.mit.edu 36 15 48717010 48717010 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017672 exon7 c.T733A p.F245I . . . AP4E1 23431 broad.mit.edu 36 15 49077073 49077073 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007347 exon18 c.T2605C p.Y869H . . . AP4E1 23431 broad.mit.edu 36 15 49078707 49078707 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007347 exon19 c.T3051C p.A1017A . . . TMOD2 29767 broad.mit.edu 36 15 49885968 49885968 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014548 exon9 c.C979T p.R327X . . . MAPK6 5597 broad.mit.edu 36 15 50126482 50126482 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002748 exon2 c.T533C p.M178T . . . UNC13C 440279 broad.mit.edu 36 15 52343752 52343752 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080534 exon7 c.C3543A p.N1181K . . . CCPG1 9236 broad.mit.edu 36 15 53439704 53439704 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004748 exon8 c.A1559G p.E520G . . . NEDD4 4734 broad.mit.edu 36 15 53996305 53996305 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198400 exon1 c.G17A p.R6Q . . . CGNL1 84952 broad.mit.edu 36 15 55531007 55531007 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032866 exon5 c.T1821C p.S607S . . . ALDH1A2 8854 broad.mit.edu 36 15 56093708 56093708 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003888 exon2 c.G181A p.A61T . . . ADAM10 102 broad.mit.edu 36 15 56707265 56707265 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001110 exon10 c.A1286G p.N429S . . . RBPMS2 348093 broad.mit.edu 36 15 62827776 62827776 + Silent SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194272 exon6 c.C462A p.A154A . . . CLPX 10845 broad.mit.edu 36 15 63236290 63236290 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006660 exon9 c.G1091A p.G364D . . . C15orf59 388135 broad.mit.edu 36 15 71819420 71819420 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039614 exon2 c.A773C p.Q258P . . . PML 5371 broad.mit.edu 36 15 72077533 72077533 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033238 exon2 c.C265A p.P89T . . . SGK269 79834 broad.mit.edu 36 15 75259857 75259857 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024776 exon3 c.C1467T p.L489L . . . LINGO1 84894 broad.mit.edu 36 15 75694673 75694673 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032808 exon2 c.C631A p.L211M . . . CTSH 1512 broad.mit.edu 36 15 77010870 77010870 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004390 exon7 c.T526C p.F176L . . . IL16 3603 broad.mit.edu 36 15 79345113 79345113 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172128 exon4 c.G480A p.A160A . . . MEX3B 84206 broad.mit.edu 36 15 80123678 80123678 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032246 exon2 c.G588A p.T196T . . . SH3GL3 6457 broad.mit.edu 36 15 82036393 82036393 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003027 exon6 c.C520T p.R174X . . . ZNF592 9640 broad.mit.edu 36 15 83135051 83135051 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014630 exon5 c.C2332T p.R778C . . . ALPK3 57538 broad.mit.edu 36 15 83201121 83201121 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020778 exon6 c.G2754A p.A918A . . . KLHL25 64410 broad.mit.edu 36 15 84113715 84113715 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022480 exon2 c.G331A p.A111T . . . MRPL46 26589 broad.mit.edu 36 15 86803981 86803981 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022163 exon4 c.C707A p.A236E . . . ACAN 176 broad.mit.edu 36 15 87202309 87202309 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135 exon12 c.C5489A p.T1830K . . . HAPLN3 145864 broad.mit.edu 36 15 87222431 87222431 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178232 exon5 c.G857A p.C286Y . . . RLBP1 6017 broad.mit.edu 36 15 87561486 87561486 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000326 exon5 c.C215T p.A72V . . . ANPEP 290 broad.mit.edu 36 15 88150319 88150319 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001150 exon2 c.A500G p.K167R . . . IDH2 3418 broad.mit.edu 36 15 88432939 88432939 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002168 exon4 c.C418T p.R140W . . . MAN2A2 4122 broad.mit.edu 36 15 89254440 89254440 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006122 exon9 c.G1491A p.A497A . . . LRRC28 123355 broad.mit.edu 36 15 97691785 97691785 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144598 exon6 c.C520T p.R174C . . . LASS3 204219 broad.mit.edu 36 15 98842362 98842362 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178842 exon6 c.T323C p.L108S . . . CHSY1 22856 broad.mit.edu 36 15 99536114 99536114 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014918 exon3 c.G1411A p.A471T . . . ZNF280D 54816 broad.mit.edu 36 15 54722478 54722478 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017661 exon20 c.2223delA p.K741fs . . . DENND4A 10260 broad.mit.edu 36 15 63770339 63770340 + Frame_Shift_Del DEL AG - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 AG AG AG - AG AG Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144823 exon23 c.3643_3644del p.1215_1215del . . . SCAMP2 10066 broad.mit.edu 36 15 72928049 72928049 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005697 exon7 c.679delT p.C227fs . . . C15orf39 56905 broad.mit.edu 36 15 73286017 73286017 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015492 exon2 c.575delG p.R192fs . . . ATF7IP2 80063 broad.mit.edu 36 16 10473492 10473492 + Silent SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024997 exon7 c.T1377A p.I459I . . . LITAF 9516 broad.mit.edu 36 16 11555027 11555027 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136473 exon3 c.C240T p.Y80Y . . . UBE2I 7329 broad.mit.edu 36 16 1304045 1304045 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194259 exon3 c.G13A p.A5T . . . BFAR 51283 broad.mit.edu 36 16 14666309 14666309 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016561 exon7 c.T1040A p.F347Y . . . IFT140 9742 broad.mit.edu 36 16 1574252 1574252 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014714 exon11 c.C1326T p.T442T . . . ABCC1 4363 broad.mit.edu 36 16 16047255 16047255 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019862 exon9 c.G1102A p.V368M . . . ABCC1 4363 broad.mit.edu 36 16 16133283 16133283 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019862 exon26 c.G3779T p.G1260V . . . NOMO3 408050 broad.mit.edu 36 16 16257510 16257510 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004067 exon11 c.C1214T p.A405V . . . XYLT1 64131 broad.mit.edu 36 16 17142625 17142625 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022166 exon7 c.C1473T p.G491G . . . RAB26 25837 broad.mit.edu 36 16 2143404 2143404 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014353 exon9 c.C752T p.A251V . . . OTOA 146183 broad.mit.edu 36 16 21604127 21604127 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144672 exon6 c.G343A p.A115T . . . PLK1 5347 broad.mit.edu 36 16 23608761 23608761 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005030 exon10 c.G1688A p.R563H . . . CACNG3 10368 broad.mit.edu 36 16 24273759 24273759 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006539 exon3 c.G400A p.V134I . . . GTF3C1 2975 broad.mit.edu 36 16 27411182 27411182 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001520 exon19 c.C3129T p.C1043C . . . SRRM2 23524 broad.mit.edu 36 16 2757203 2757203 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016333 exon11 c.G6673A p.A2225T . . . SULT1A1 6817 broad.mit.edu 36 16 28527342 28527342 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177529 exon3 c.C232T p.R78W . . . ATP2A1 487 broad.mit.edu 36 16 28821017 28821017 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004320 exon17 c.C2333T p.T778I . . . RABEP2 79874 broad.mit.edu 36 16 28829964 28829964 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024816 exon6 c.G932A p.R311H . . . KCTD13 253980 broad.mit.edu 36 16 29844682 29844682 + Silent SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178863 exon1 c.C174A p.T58T . . . ALDOA 226 broad.mit.edu 36 16 29986385 29986385 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_184041 exon3 c.G226T p.G76C . . . CLDN6 9074 broad.mit.edu 36 16 3005880 3005880 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021195 exon2 c.G144T p.E48D . . . ZNF205 7755 broad.mit.edu 36 16 3105535 3105535 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042428 exon3 c.G236A p.G79D . . . ITGAD 3681 broad.mit.edu 36 16 31336972 31336972 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005353 exon21 c.C2575T p.R859C . . . CREBBP 1387 broad.mit.edu 36 16 3718834 3718834 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004380 exon31 c.G6215A p.R2072Q . . . DNAJA2 10294 broad.mit.edu 36 16 45548541 45548541 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005880 exon9 c.A1140G p.R380R . . . ABCC12 94160 broad.mit.edu 36 16 46706940 46706940 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033226 exon13 c.C1876A p.L626M . . . ZNF423 23090 broad.mit.edu 36 16 48230061 48230061 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015069 exon5 c.G503A p.C168Y . . . SALL1 6299 broad.mit.edu 36 16 49730428 49730428 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002968 exon2 c.C3206A p.P1069H . . . NAGPA 51172 broad.mit.edu 36 16 5015660 5015660 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016256 exon10 c.G1368A p.A456A . . . FTO 79068 broad.mit.edu 36 16 52471280 52471280 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080432 exon6 c.T999C p.Y333Y . . . IRX5 10265 broad.mit.edu 36 16 53523986 53523986 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005853 exon2 c.T325C p.Y109H . . . CES1 1066 broad.mit.edu 36 16 54411797 54411797 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001266 exon6 c.G786C p.K262N . . . GNAO1 2775 broad.mit.edu 36 16 54920151 54920151 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138736 exon4 c.C411T p.I137I . . . CETP 1071 broad.mit.edu 36 16 55572583 55572583 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000078 exon12 c.A1159G p.T387A . . . NLRC5 84166 broad.mit.edu 36 16 55618171 55618171 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032206 exon6 c.C1815T p.R605R . . . CCDC135 84229 broad.mit.edu 36 16 56289557 56289557 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032269 exon2 c.G195A p.A65A . . . ZNF319 57567 broad.mit.edu 36 16 56588829 56588829 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020807 exon2 c.C842T p.S281L . . . MMP15 4324 broad.mit.edu 36 16 56631503 56631503 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002428 exon4 c.G664A p.A222T . . . CNOT1 23019 broad.mit.edu 36 16 57134923 57134923 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206999 exon31 c.C4523T p.A1508V . . . CNOT1 23019 broad.mit.edu 36 16 57170237 57170237 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206999 exon13 c.T1451G p.L484R . . . GOT2 2806 broad.mit.edu 36 16 57308202 57308202 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002080 exon7 c.C719T p.A240V . . . CDH8 1006 broad.mit.edu 36 16 60492841 60492841 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001796 exon3 c.A290C p.K97T . . . C16orf13 84326 broad.mit.edu 36 16 624633 624633 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040160 exon5 c.G512A p.S171N . . . DYNC1LI2 1783 broad.mit.edu 36 16 65327563 65327563 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006141 exon5 c.C615T p.S205S . . . EXOC3L 283849 broad.mit.edu 36 16 65778935 65778935 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_178516 exon5 c.G734A p.R245H . . . FHOD1 29109 broad.mit.edu 36 16 65828702 65828702 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013241 exon9 c.C934T p.R312C . . . EDC4 23644 broad.mit.edu 36 16 66471178 66471178 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014329 exon15 c.G1821T p.Q607H . . . NFATC3 4775 broad.mit.edu 36 16 66782272 66782272 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173163 exon9 c.A2199G p.S733S . . . HAS3 3038 broad.mit.edu 36 16 67704850 67704850 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005329 exon3 c.C642T p.C214C . . . DDX19A 55308 broad.mit.edu 36 16 68952885 68952885 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018332 exon5 c.G357T p.E119D . . . ZFHX3 463 broad.mit.edu 36 16 71549477 71549477 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006885 exon2 c.T2069C p.M690T . . . FA2H 79152 broad.mit.edu 36 16 73317656 73317656 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024306 exon4 c.G581A p.G194D . . . CNTNAP4 85445 broad.mit.edu 36 16 75070848 75070848 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033401 exon12 c.G1793A p.S598N . . . CDYL2 124359 broad.mit.edu 36 16 79204064 79204064 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152342 exon5 c.G1178C p.C393S . . . GAN 8139 broad.mit.edu 36 16 79948941 79948941 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022041 exon5 c.C877T p.R293X . . . HSDL1 83693 broad.mit.edu 36 16 82720853 82720853 + Nonsense_Mutation SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031463 exon5 c.T695A p.L232X . . . LRRC50 123872 broad.mit.edu 36 16 82745697 82745697 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178452 exon4 c.G367T p.E123X . . . FAM92B 339145 broad.mit.edu 36 16 83701480 83701480 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198491 exon2 c.G108A p.T36T . . . ZCCHC14 23174 broad.mit.edu 36 16 86003571 86003571 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015144 exon12 c.G1846A p.V616M . . . C16orf68 79091 broad.mit.edu 36 16 8636637 8636637 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024109 exon5 c.G667A p.A223T . . . BANP 54971 broad.mit.edu 36 16 86609597 86609597 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173543 exon7 c.G694A p.A232T . . . ANKRD11 29123 broad.mit.edu 36 16 87873320 87873320 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_013275 exon9 c.C7131T p.D2377D . . . ANKRD11 29123 broad.mit.edu 36 16 87876152 87876152 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013275 exon9 c.C4299T p.S1433S . . . GRIN2A 2903 broad.mit.edu 36 16 9764984 9764984 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000833 exon14 c.G3918A p.R1306R . . . GRIN2A 2903 broad.mit.edu 36 16 9799659 9799659 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134408 exon11 c.G2332A p.A778T . . . GTF3C1 2975 broad.mit.edu 36 16 27424864 27424865 + Frame_Shift_Del DEL CT - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 CT CT CT - CT CT Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001520 exon10 c.1626_1627del p.542_543del . . . IL27 246778 broad.mit.edu 36 16 28420845 28420845 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_145659 exon4 c.415delG p.A139fs . . . MYH13 8735 broad.mit.edu 36 17 10153303 10153303 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003802 exon35 c.C5142T p.S1714S . . . MYH13 8735 broad.mit.edu 36 17 10153730 10153730 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003802 exon34 c.C4799A p.A1600D . . . MYH13 8735 broad.mit.edu 36 17 10174562 10174562 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003802 exon21 c.T2302G p.F768V . . . MYH2 4620 broad.mit.edu 36 17 10383592 10383592 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100112 exon13 c.C1160T p.A387V . . . ZNF18 7566 broad.mit.edu 36 17 11822178 11822178 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144680 exon9 c.C1471A p.P491T . . . MAP2K4 6416 broad.mit.edu 36 17 11925466 11925466 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003010 exon3 c.A287T p.D96V . . . ELAC2 60528 broad.mit.edu 36 17 12840697 12840697 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165962 exon16 c.T1431C p.G477G . . . INPP5K 51763 broad.mit.edu 36 17 1346135 1346135 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016532 exon11 c.G1259A p.R420H . . . COX10 1352 broad.mit.edu 36 17 14036159 14036159 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001303 exon6 c.C824T p.T275I . . . CDRT1 374286 broad.mit.edu 36 17 15437410 15437410 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006382 exon11 c.G1972A p.D658N . . . MYO15A 51168 broad.mit.edu 36 17 17994887 17994887 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016239 exon37 c.A7408G p.T2470A . . . MYO15A 51168 broad.mit.edu 36 17 18016206 18016206 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016239 exon63 c.C10227T p.S3409S . . . LGALS9 3965 broad.mit.edu 36 17 22998476 22998476 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_009587 exon10 c.G812A p.R271H . . . C17orf108 201229 broad.mit.edu 36 17 23231480 23231480 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001076680 exon3 c.A166T p.I56F . . . TMEM199 147007 broad.mit.edu 36 17 23711934 23711934 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152464 exon5 c.G468A p.T156T . . . FOXN1 8456 broad.mit.edu 36 17 23875730 23875730 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003593 exon2 c.G206A p.R69H . . . KIAA0100 9703 broad.mit.edu 36 17 23966243 23966243 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014680 exon39 c.C6674G p.P2225R . . . PROCA1 147011 broad.mit.edu 36 17 24055936 24055936 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152465 exon2 c.G144A p.G48G . . . PAFAH1B1 5048 broad.mit.edu 36 17 2517082 2517082 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000430 exon5 c.C239T p.T80M . . . RAP1GAP2 23108 broad.mit.edu 36 17 2845492 2845492 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015085 exon13 c.C1026A p.T342T . . . NLE1 54475 broad.mit.edu 36 17 30487553 30487553 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014445 exon7 c.G29A p.R10H . . . RDM1 201299 broad.mit.edu 36 17 31271316 31271316 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163122 exon4 c.C573T p.H191H . . . CCL23 6368 broad.mit.edu 36 17 31364957 31364957 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145898 exon3 c.C191T p.P64L . . . AATF 26574 broad.mit.edu 36 17 32381691 32381691 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012138 exon2 c.A156G p.V52V . . . ACACA 31 broad.mit.edu 36 17 32671588 32671588 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198834 exon24 c.G3038A p.R1013Q . . . OR3A3 8392 broad.mit.edu 36 17 3271304 3271304 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012373 exon1 c.A693G p.V231V . . . DDX52 11056 broad.mit.edu 36 17 33052525 33052525 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007010 exon14 c.T1667C p.M556T . . . MLLT6 4302 broad.mit.edu 36 17 34126517 34126517 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005937 exon10 c.G1408A p.A470T . . . TOP2A 7153 broad.mit.edu 36 17 35806157 35806157 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001067 exon28 c.T3624C p.A1208A . . . TOP2A 7153 broad.mit.edu 36 17 35809670 35809670 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001067 exon24 c.T3176C p.I1059T . . . KRT34 3885 broad.mit.edu 36 17 36787904 36787904 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021013 exon7 c.C1244T p.A415V . . . ACLY 47 broad.mit.edu 36 17 37283617 37283617 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198830 exon22 c.T2585C p.V862A . . . TTC25 83538 broad.mit.edu 36 17 37370712 37370712 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031421 exon11 c.T1512C p.S504S . . . STAT5A 6776 broad.mit.edu 36 17 37711962 37711962 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003152 exon14 c.C1651T p.L551L . . . CNTNAP1 8506 broad.mit.edu 36 17 38092539 38092539 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003632 exon7 c.C993T p.R331R . . . AOC2 314 broad.mit.edu 36 17 38254725 38254725 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001158 exon2 c.G1685A p.R562Q . . . G6PC 2538 broad.mit.edu 36 17 38316887 38316887 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000151 exon5 c.C992T p.A331V . . . ZZEF1 23140 broad.mit.edu 36 17 3884092 3884092 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015113 exon40 c.C6550T p.L2184L . . . ETV4 2118 broad.mit.edu 36 17 38966828 38966828 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001986 exon6 c.G308A p.R103H . . . MPP2 4355 broad.mit.edu 36 17 39315382 39315382 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005374 exon6 c.C477T p.G159G . . . UBTF 7343 broad.mit.edu 36 17 39643291 39643291 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001076683 exon13 c.G1325A p.G442D . . . GRN 2896 broad.mit.edu 36 17 39784046 39784046 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002087 exon8 c.C824A p.P275H . . . ANKFY1 51479 broad.mit.edu 36 17 4035068 4035068 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016376 exon12 c.C1493T p.A498V . . . ANKFY1 51479 broad.mit.edu 36 17 4047572 4047572 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020740 exon8 c.C948T p.N316N . . . PLCD3 113026 broad.mit.edu 36 17 40546404 40546404 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133373 exon12 c.T1923C p.P641P . . . PLEKHM1 9842 broad.mit.edu 36 17 40911070 40911070 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014798 exon3 c.T275C p.L92P . . . ITGB3 3690 broad.mit.edu 36 17 42719529 42719529 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000212 exon6 c.T872C p.I291T . . . NPEPPS 9520 broad.mit.edu 36 17 43011850 43011850 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006310 exon4 c.C514T p.R172C . . . ABI3 51225 broad.mit.edu 36 17 44648943 44648943 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135186 exon2 c.G169A p.A57T . . . COL1A1 1277 broad.mit.edu 36 17 45623237 45623237 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000088 exon33 c.C2283T p.G761G . . . XYLT2 64132 broad.mit.edu 36 17 45790580 45790580 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022167 exon10 c.G1955T p.W652L . . . CACNA1G 8913 broad.mit.edu 36 17 46005180 46005180 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198382 exon6 c.A1013G p.D338G . . . CACNA1G 8913 broad.mit.edu 36 17 46050267 46050267 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198382 exon29 c.C5135T p.T1712M . . . RNF167 26001 broad.mit.edu 36 17 4788805 4788805 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015528 exon10 c.T802C p.C268R . . . CAMTA2 23125 broad.mit.edu 36 17 4816856 4816856 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015099 exon15 c.T2435C p.L812P . . . ZFP3 124961 broad.mit.edu 36 17 4935817 4935817 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153018 exon2 c.C294T p.S98S . . . EPX 8288 broad.mit.edu 36 17 53629587 53629587 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000502 exon7 c.C1090T p.R364C . . . RNF43 54894 broad.mit.edu 36 17 53847690 53847690 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017763 exon2 c.T248C p.M83T . . . PPM1E 22843 broad.mit.edu 36 17 54412881 54412881 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014906 exon7 c.T1975A p.S659T . . . EFCAB3 146779 broad.mit.edu 36 17 57814126 57814126 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173503 exon2 c.A54G p.V18V . . . KCNH6 81033 broad.mit.edu 36 17 58965360 58965360 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030779 exon5 c.G1057A p.A353T . . . DCAF7 10238 broad.mit.edu 36 17 59020225 59020225 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005828 exon7 c.G989A p.R330H . . . MAP3K3 4215 broad.mit.edu 36 17 59123397 59123397 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002401 exon15 c.G1538A p.R513H . . . DDX42 11325 broad.mit.edu 36 17 59246667 59246667 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203499 exon16 c.C1915T p.R639W . . . HELZ 9931 broad.mit.edu 36 17 62593136 62593136 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014877 exon15 c.T1815C p.Y605Y . . . PRKAR1A 5573 broad.mit.edu 36 17 64035625 64035625 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_212472 exon8 c.T758C p.V253A . . . ABCA6 23460 broad.mit.edu 36 17 64636495 64636495 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080284 exon8 c.C979A p.L327I . . . SSTR2 6752 broad.mit.edu 36 17 68677882 68677882 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001050 exon2 c.G829A p.V277I . . . BCL6B 255877 broad.mit.edu 36 17 6869171 6869171 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181844 exon5 c.A817G p.T273A . . . SDK2 54549 broad.mit.edu 36 17 68876211 68876211 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144952 exon37 c.C5097T p.S1699S . . . GRIN2C 2905 broad.mit.edu 36 17 70358054 70358054 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000835 exon6 c.C1377T p.I459I . . . PHF23 79142 broad.mit.edu 36 17 7080202 7080202 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024297 exon4 c.G768A p.E256E . . . KIAA0195 9772 broad.mit.edu 36 17 71000620 71000620 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014738 exon16 c.C1928T p.A643V . . . ITGB4 3691 broad.mit.edu 36 17 71235388 71235388 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005731 exon5 c.G326A p.R109H . . . CDK3 1018 broad.mit.edu 36 17 71509553 71509553 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001258 exon3 c.G120T p.E40D . . . EVPL 2125 broad.mit.edu 36 17 71523208 71523208 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001988 exon15 c.G1807A p.A603T . . . PRPSAP1 5635 broad.mit.edu 36 17 71838227 71838227 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002766 exon5 c.A579G p.E193E . . . POLR2A 5430 broad.mit.edu 36 17 7356944 7356944 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000937 exon28 c.A4734G p.S1578S . . . C1QTNF1 114897 broad.mit.edu 36 17 74555547 74555547 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198593 exon4 c.C628T p.H210Y . . . RNF213 57674 broad.mit.edu 36 17 75956501 75956501 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020914 exon45 c.C12265T p.P4089S . . . DNAH2 146754 broad.mit.edu 36 17 7610489 7610489 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020877 exon21 c.C3640T p.Q1214X . . . C17orf62 79415 broad.mit.edu 36 17 77995736 77995736 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100407 exon7 c.G319A p.V107I . . . ALOXE3 59344 broad.mit.edu 36 17 7948230 7948230 + Silent SNP T C C rs34545935 unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165960 exon14 c.A2109G p.G703G . . . ARHGEF15 22899 broad.mit.edu 36 17 8159216 8159216 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173728 exon6 c.C1156A p.P386T . . . USP43 124739 broad.mit.edu 36 17 9554027 9554027 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153210 exon13 c.T2041C p.W681R . . . TRPV2 51393 broad.mit.edu 36 17 16271560 16271560 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016113 exon8 c.1324delG p.G442fs . . . SGSM2 9905 broad.mit.edu 36 17 2229228 2229230 + In_Frame_Del DEL CAT - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 CAT CAT CAT - CAT CAT Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098509 exon22 c.2913_2915del p.971_972del . . . CORO6 84940 broad.mit.edu 36 17 24972396 24972396 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032854 exon1 c.170delG p.G57fs . . . ACCN1 40 broad.mit.edu 36 17 28375130 28375130 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183377 exon6 c.1211delA p.K404fs . . . KRT19 3880 broad.mit.edu 36 17 36937846 36937846 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002276 exon1 c.180delC p.A60fs . . . PPM1D 8493 broad.mit.edu 36 17 56095406 56095406 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003620 exon6 c.1529delA p.Q510fs . . . AXIN2 8313 broad.mit.edu 36 17 60964401 60964402 + Frame_Shift_Del DEL CT - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 CT CT Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004655 exon6 c.1214_1215del p.405_405del . . . SOX9 6662 broad.mit.edu 36 17 67631689 67631689 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000346 exon3 c.1096delC p.P366fs . . . SLC16A5 9121 broad.mit.edu 36 17 70607963 70607963 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004695 exon5 c.610delC p.P204fs . . . CNTROB 116840 broad.mit.edu 36 17 7791753 7791753 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053051 exon14 c.2133delT p.N711fs . . . FLJ40504 284085 broad.mit.edu 36 17 23628527 23628527 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . IMPA2 3613 broad.mit.edu 36 18 11989060 11989061 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014214 exon2 c.104_105insA p.R35fs . . . LAMA3 3909 broad.mit.edu 36 18 19676467 19676467 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198129 exon28 c.C3447T p.G1149G . . . LAMA3 3909 broad.mit.edu 36 18 19755015 19755015 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127718 exon23 c.C3047T p.S1016L . . . CABYR 26256 broad.mit.edu 36 18 19989973 19989973 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138644 exon4 c.T510C p.A170A . . . DSC3 1825 broad.mit.edu 36 18 26859747 26859747 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001941 exon5 c.C607T p.R203C . . . DSG4 147409 broad.mit.edu 36 18 27210896 27210896 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134453 exon1 c.C24T p.N8N . . . TRAPPC8 22878 broad.mit.edu 36 18 27734950 27734950 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014939 exon10 c.G1426A p.A476T . . . KLHL14 57565 broad.mit.edu 36 18 28514445 28514445 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020805 exon6 c.C1354T p.R452C . . . ASXL3 80816 broad.mit.edu 36 18 29577218 29577218 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030632 exon12 c.G3408T p.K1136N . . . MYOM1 8736 broad.mit.edu 36 18 3057413 3057413 + Silent SNP G A A rs1042723 byFrequency TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019856 exon37 c.C4617T p.G1539G . . . C18orf10 25941 broad.mit.edu 36 18 32630936 32630936 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015476 exon7 c.A733G p.K245E . . . C18orf10 25941 broad.mit.edu 36 18 32632464 32632464 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015476 exon6 c.C603T p.G201G . . . SIGLEC15 284266 broad.mit.edu 36 18 41659731 41659731 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213602 exon1 c.G40A p.V14I . . . SMAD7 4092 broad.mit.edu 36 18 44702235 44702235 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005904 exon4 c.C786T p.C262C . . . MBD1 4152 broad.mit.edu 36 18 46056018 46056018 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015847 exon7 c.C595T p.R199C . . . MEX3C 51320 broad.mit.edu 36 18 46956954 46956954 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016626 exon2 c.A1745G p.N582S . . . DCC 1630 broad.mit.edu 36 18 48121230 48121230 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005215 exon1 c.G75A p.A25A . . . DCC 1630 broad.mit.edu 36 18 49279694 49279694 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005215 exon27 c.A3927G p.Q1309Q . . . C18orf26 284254 broad.mit.edu 36 18 50416291 50416291 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173629 exon3 c.G550T p.A184S . . . ATP8B1 5205 broad.mit.edu 36 18 53479504 53479504 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005603 exon22 c.C2607T p.T869T . . . EPB41L3 23136 broad.mit.edu 36 18 5385619 5385619 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012307 exon20 c.C3061T p.H1021Y . . . EPB41L3 23136 broad.mit.edu 36 18 5388137 5388137 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012307 exon17 c.G2355A p.K785K . . . EPB41L3 23136 broad.mit.edu 36 18 5423547 5423547 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012307 exon8 c.C833T p.T278M . . . DSEL 92126 broad.mit.edu 36 18 63330454 63330454 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032160 exon2 c.G2402A p.W801X . . . LAMA1 284217 broad.mit.edu 36 18 7004009 7004009 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005559 exon23 c.C3168T p.C1056C . . . ZADH2 284273 broad.mit.edu 36 18 71042700 71042700 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175907 exon2 c.C793T p.R265C . . . CTDP1 9150 broad.mit.edu 36 18 75589916 75589916 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004715 exon11 c.G2439A p.P813P . . . PTPRM 5797 broad.mit.edu 36 18 8243226 8243226 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002845 exon17 c.T2529C p.D843D . . . PTPRM 5797 broad.mit.edu 36 18 8374591 8374591 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002845 exon28 c.A3912G p.V1304V . . . RALBP1 10928 broad.mit.edu 36 18 9503198 9503198 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006788 exon2 c.A155G p.D52G . . . PPP4R1 9989 broad.mit.edu 36 18 9537907 9537907 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042388 exon20 c.G2733A p.E911E . . . TTC39C 125488 broad.mit.edu 36 18 19916975 19916975 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001135993 exon6 c.916delA p.K306fs . . . DSG4 147409 broad.mit.edu 36 18 27245268 27245268 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001134453 exon14 c.2271delG p.M757fs . . . ATP8B1 5205 broad.mit.edu 36 18 53480758 53480758 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005603 exon21 c.2373delT p.F791fs . . . RTTN 25914 broad.mit.edu 36 18 66022472 66022472 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_173630 exon3 c.227delC p.P76fs . . . TXNDC2 84203 broad.mit.edu 36 18 9878061 9878061 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001098529 exon2 c.1585delA p.K529fs . . . DCAF15 90379 broad.mit.edu 36 19 13930917 13930918 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_138353 exon7 c.845_846insC p.S282fs . . . ZNF790 388536 broad.mit.edu 36 19 42001341 42001342 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_206894 exon5 c.1745_1746insA p.I582fs . . . FCGBP 8857 broad.mit.edu 36 19 45103692 45103693 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - - G - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003890 exon7 c.3776_3777insC p.H1259fs . . . ZNF20 7568 broad.mit.edu 36 19 12119262 12119263 + De_novo_Start_OutOfFrame INS - T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . PRR22 163154 broad.mit.edu 36 19 5735177 5735178 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . DNMT1 1786 broad.mit.edu 36 19 10128124 10128124 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130823 exon18 c.G1342A p.E448K . . . KRI1 65095 broad.mit.edu 36 19 10525956 10525956 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023008 exon19 c.G1801A p.A601T . . . QTRT1 81890 broad.mit.edu 36 19 10684637 10684637 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031209 exon9 c.G980A p.R327H . . . ZNF44 51710 broad.mit.edu 36 19 12244978 12244978 + Silent SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016264 exon4 c.C1092A p.P364P . . . MAN2B1 4125 broad.mit.edu 36 19 12621201 12621201 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000528 exon19 c.C2309T p.P770L . . . MAN2B1 4125 broad.mit.edu 36 19 12621969 12621969 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000528 exon17 c.C2114A p.P705Q . . . C19orf43 79002 broad.mit.edu 36 19 12703219 12703219 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024038 exon2 c.G362A p.G121D . . . RTBDN 83546 broad.mit.edu 36 19 12801786 12801786 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031429 exon3 c.G104A p.C35Y . . . ASF1B 55723 broad.mit.edu 36 19 14092404 14092404 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018154 exon4 c.G476T p.R159M . . . LPHN1 22859 broad.mit.edu 36 19 14135139 14135139 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014921 exon5 c.G474A p.W158X . . . NOTCH3 4854 broad.mit.edu 36 19 15133459 15133459 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000435 exon33 c.C5980A p.H1994N . . . CYP4F22 126410 broad.mit.edu 36 19 15501597 15501597 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173483 exon4 c.G300T p.M100I . . . CYP4F12 66002 broad.mit.edu 36 19 15650169 15650169 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023944 exon3 c.C297T p.I99I . . . CYP4F12 66002 broad.mit.edu 36 19 15668285 15668285 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023944 exon12 c.T1360C p.S454P . . . CYP4F2 8529 broad.mit.edu 36 19 15869283 15869283 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001082 exon2 c.C139T p.R47C . . . CIB3 117286 broad.mit.edu 36 19 16140083 16140083 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054113 exon4 c.C211A p.R71S . . . MYO9B 4650 broad.mit.edu 36 19 17156791 17156791 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130065 exon17 c.T2491A p.F831I . . . LRRC25 126364 broad.mit.edu 36 19 18363854 18363854 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145256 exon2 c.G861A p.L287L . . . TMEM59L 25789 broad.mit.edu 36 19 18588909 18588909 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012109 exon5 c.G661A p.V221M . . . NCAN 1463 broad.mit.edu 36 19 19190907 19190907 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004386 exon3 c.G257A p.G86D . . . ZNF253 56242 broad.mit.edu 36 19 19863411 19863411 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021047 exon4 c.G355A p.V119M . . . DOT1L 84444 broad.mit.edu 36 19 2150922 2150922 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032482 exon8 c.C691T p.R231X . . . ZNF43 7594 broad.mit.edu 36 19 21783028 21783028 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003423 exon4 c.T1651G p.S551A . . . ZNF681 148213 broad.mit.edu 36 19 23718544 23718544 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138286 exon4 c.G1648A p.A550T . . . ZNF254 9534 broad.mit.edu 36 19 24102064 24102064 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203282 exon4 c.C1422A p.S474S . . . ZNF536 9745 broad.mit.edu 36 19 35627244 35627244 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014717 exon2 c.A935C p.E312A . . . PDCD5 9141 broad.mit.edu 36 19 37767713 37767713 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004708 exon3 c.A122G p.N41S . . . SLC7A9 11136 broad.mit.edu 36 19 38026615 38026615 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126335 exon10 c.G1060A p.A354T . . . WDR88 126248 broad.mit.edu 36 19 38358144 38358144 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173479 exon11 c.C1245T p.C415C . . . CEBPG 1054 broad.mit.edu 36 19 38562153 38562153 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001806 exon2 c.G168A p.S56S . . . ZNF792 126375 broad.mit.edu 36 19 40141592 40141592 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175872 exon4 c.G1007A p.S336N . . . MAG 4099 broad.mit.edu 36 19 40478578 40478578 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199216 exon4 c.G194A p.R65H . . . MLL4 9757 broad.mit.edu 36 19 40910453 40910453 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014727 exon17 c.G4317A p.G1439G . . . ARHGAP33 115703 broad.mit.edu 36 19 40961214 40961214 + De_novo_Start_OutOfFrame SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052948 exon5 c.C279A p.S93S . . . POLR2I 5438 broad.mit.edu 36 19 41296767 41296767 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006233 exon5 c.C305T p.A102V . . . ZNF529 57711 broad.mit.edu 36 19 41729788 41729788 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145649 exon6 c.A1512G p.K504K . . . SHD 56961 broad.mit.edu 36 19 4235783 4235783 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020209 exon4 c.T598C p.F200L . . . SIPA1L3 23094 broad.mit.edu 36 19 43384446 43384446 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015073 exon20 c.C5089T p.P1697S . . . KCNK6 9424 broad.mit.edu 36 19 43509089 43509089 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004823 exon2 c.G339A p.T113T . . . KCNK6 9424 broad.mit.edu 36 19 43509287 43509287 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004823 exon2 c.C537T p.V179V . . . RINL 126432 broad.mit.edu 36 19 44053286 44053286 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198445 exon8 c.T446C p.V149A . . . FBXO17 115290 broad.mit.edu 36 19 44127578 44127578 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148169 exon5 c.C591T p.G197G . . . PLIN4 729359 broad.mit.edu 36 19 4463415 4463415 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080400 exon3 c.C1515T p.T505T . . . FBL 2091 broad.mit.edu 36 19 45022971 45022971 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001436 exon3 c.A206T p.N69I . . . FCGBP 8857 broad.mit.edu 36 19 45124933 45124933 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003890 exon2 c.G1176A p.S392S . . . SERTAD3 29946 broad.mit.edu 36 19 45639409 45639409 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203344 exon2 c.G419A p.R140Q . . . TGFB1 7040 broad.mit.edu 36 19 46539916 46539916 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000660 exon4 c.C711T p.N237N . . . ATP1A3 478 broad.mit.edu 36 19 47180925 47180925 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152296 exon8 c.G978T p.L326L . . . PSG1 5669 broad.mit.edu 36 19 48064835 48064835 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006905 exon4 c.A901G p.T301A . . . IRGQ 126298 broad.mit.edu 36 19 48788995 48788995 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007561 exon3 c.G895A p.A299T . . . IRGC 56269 broad.mit.edu 36 19 48914814 48914814 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019612 exon2 c.C264T p.G88G . . . CEACAM20 125931 broad.mit.edu 36 19 49721093 49721093 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102597 exon2 c.C77A p.P26H . . . PVRL2 5819 broad.mit.edu 36 19 50067243 50067243 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002856 exon3 c.C772T p.R258C . . . RSPH6A 81492 broad.mit.edu 36 19 50999870 50999870 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030785 exon3 c.C1133T p.T378M . . . PRKD2 25865 broad.mit.edu 36 19 51873538 51873538 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079881 exon17 c.G2293A p.A765T . . . GRLF1 2909 broad.mit.edu 36 19 52114751 52114751 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004491 exon1 c.C979T p.R327C . . . PLA2G4C 8605 broad.mit.edu 36 19 53257119 53257119 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159323 exon14 c.G1205A p.R402Q . . . GRIN2D 2906 broad.mit.edu 36 19 53636928 53636928 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000836 exon11 c.C2343T p.G781G . . . SPHK2 56848 broad.mit.edu 36 19 53821159 53821159 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020126 exon3 c.G239A p.R80H . . . TULP2 7288 broad.mit.edu 36 19 54083201 54083201 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003323 exon8 c.G766A p.E256K . . . SLC17A7 57030 broad.mit.edu 36 19 54625679 54625679 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020309 exon12 c.C1592T p.P531L . . . SLC17A7 57030 broad.mit.edu 36 19 54627898 54627898 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020309 exon8 c.C999T p.F333F . . . SCAF1 58506 broad.mit.edu 36 19 54847863 54847863 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021228 exon7 c.C2405T p.A802V . . . AKT1S1 84335 broad.mit.edu 36 19 55066755 55066755 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098632 exon4 c.G488C p.G163A . . . TBC1D17 79735 broad.mit.edu 36 19 55075390 55075390 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168222 exon3 c.A139G p.T47A . . . POLD1 5424 broad.mit.edu 36 19 55608924 55608924 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002691 exon19 c.G2364A p.S788S . . . SIGLEC10 89790 broad.mit.edu 36 19 56610124 56610124 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171156 exon8 c.C1207T p.H403Y . . . FPR2 2358 broad.mit.edu 36 19 56964728 56964728 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001462 exon2 c.G1005A p.T335T . . . ZNF350 59348 broad.mit.edu 36 19 57160787 57160787 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021632 exon5 c.C731T p.S244F . . . POLRMT 5442 broad.mit.edu 36 19 581096 581096 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005035 exon3 c.C266T p.A89V . . . ZNF816 125893 broad.mit.edu 36 19 58146426 58146426 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031665 exon5 c.T414C p.S138S . . . PRKCG 5582 broad.mit.edu 36 19 59088089 59088089 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002739 exon8 c.A857T p.Y286F . . . TMC4 147798 broad.mit.edu 36 19 59361009 59361009 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145303 exon6 c.G919A p.V307I . . . TSEN34 79042 broad.mit.edu 36 19 59387266 59387266 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001077446 exon1 c.G239T p.S80I . . . LILRA3 11026 broad.mit.edu 36 19 59494322 59494322 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006865 exon5 c.A931G p.S311G . . . LILRA4 23547 broad.mit.edu 36 19 59540649 59540649 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012276 exon5 c.C786T p.G262G . . . LAIR1 3903 broad.mit.edu 36 19 59568221 59568221 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021706 exon1 c.G3C p.M1I . . . TTYH1 57348 broad.mit.edu 36 19 59638840 59638840 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020659 exon12 c.A1289G p.D430G . . . TNNI3 7137 broad.mit.edu 36 19 60357985 60357985 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000363 exon6 c.G308A p.R103H . . . U2AF2 11338 broad.mit.edu 36 19 60871927 60871927 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007279 exon9 c.G902A p.G301D . . . NLRP11 204801 broad.mit.edu 36 19 61021124 61021124 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145007 exon4 c.C229T p.R77C . . . NLRP4 147945 broad.mit.edu 36 19 61062315 61062315 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_134444 exon3 c.G1744A p.D582N . . . ZFP28 140612 broad.mit.edu 36 19 61758401 61758401 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020828 exon8 c.C2435A p.S812Y . . . ZIM3 114026 broad.mit.edu 36 19 62338855 62338855 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052882 exon5 c.G662T p.R221M . . . AURKC 6795 broad.mit.edu 36 19 62435738 62435738 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003160 exon4 c.C211T p.R71C . . . ZNF154 7710 broad.mit.edu 36 19 62908134 62908134 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085384 exon2 c.C59T p.A20V . . . ZSCAN18 65982 broad.mit.edu 36 19 63293378 63293378 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145542 exon2 c.G237T p.P79P . . . ZNF324B 388569 broad.mit.edu 36 19 63659293 63659293 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207395 exon4 c.G1170A p.T390T . . . SLC27A5 10998 broad.mit.edu 36 19 63714575 63714575 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012254 exon1 c.C560T p.A187V . . . VAV1 7409 broad.mit.edu 36 19 6784931 6784931 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005428 exon19 c.C1744T p.R582C . . . FBN3 84467 broad.mit.edu 36 19 8046180 8046180 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032447 exon59 c.C7569T p.G2523G . . . HNRNPM 4670 broad.mit.edu 36 19 8438431 8438431 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005968 exon8 c.G797A p.G266D . . . MUC16 94025 broad.mit.edu 36 19 8886653 8886653 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon15 c.G36801T p.K12267N . . . MUC16 94025 broad.mit.edu 36 19 8946411 8946411 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon1 c.C6404A p.P2135H . . . MUC16 94025 broad.mit.edu 36 19 8951013 8951013 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon1 c.A1802G p.H601R . . . ZNF559 84527 broad.mit.edu 36 19 9314569 9314569 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032497 exon6 c.C1442T p.T481I . . . ATG4D 84971 broad.mit.edu 36 19 10518546 10518546 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032885 exon4 c.525delC p.G175fs . . . ZNF793 390927 broad.mit.edu 36 19 42720255 42720255 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013659 exon8 c.855delT p.C285fs . . . IRGQ 126298 broad.mit.edu 36 19 48788406 48788408 + In_Frame_Del DEL GCC - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 GCC GCC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001007561 exon3 c.1482_1484del p.494_495del . . . FBXO46 23403 broad.mit.edu 36 19 50907927 50907927 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080469 exon2 c.667delG p.D223fs . . . ZNF28 7576 broad.mit.edu 36 19 57996214 57996214 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006969 exon4 c.696delA p.K232fs . . . PPP6R1 22870 broad.mit.edu 36 19 60439848 60439848 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014931 exon17 c.1963delC p.R655fs . . . USP29 57663 broad.mit.edu 36 19 62332051 62332051 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020903 exon4 c.196delA p.K66fs . . . CEACAM16 388551 broad.mit.edu 36 19 49894542 49894542 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . NOTCH2 4853 broad.mit.edu 36 1 120266505 120266506 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024408 exon28 c.5090_5091insG p.V1697fs . . . PYGO2 90780 broad.mit.edu 36 1 153198651 153198652 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - - G - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138300 exon3 c.449_450insC p.Q150fs . . . IGSF8 93185 broad.mit.edu 36 1 158329055 158329056 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_052868 exon5 c.1367_1368insG p.E456fs . . . CLCNKA 1187 broad.mit.edu 36 1 16229138 16229139 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - - G - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042704 exon14 c.1389_1390insG p.P463fs . . . GPATCH2 55105 broad.mit.edu 36 1 215671118 215671119 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018040 exon10 c.1579_1580insA p.S527fs . . . WDR78 79819 broad.mit.edu 36 1 67143606 67143607 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024763 exon2 c.211_212insT p.A71fs . . . COL11A1 1301 broad.mit.edu 36 1 103125032 103125032 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001854 exon63 c.A4777C p.M1593L . . . PEX14 5195 broad.mit.edu 36 1 10601008 10601008 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004565 exon5 c.G331A p.A111T . . . CASZ1 54897 broad.mit.edu 36 1 10628913 10628913 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079843 exon17 c.C3555T p.L1185L . . . CASZ1 54897 broad.mit.edu 36 1 10636435 10636435 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079843 exon11 c.G2266A p.A756T . . . VAV3 10451 broad.mit.edu 36 1 108123597 108123597 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006113 exon3 c.C362T p.A121V . . . FNDC7 163479 broad.mit.edu 36 1 109072194 109072194 + Silent SNP C A A rs61740850 unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144937 exon7 c.C1353A p.P451P . . . WDR47 22911 broad.mit.edu 36 1 109327463 109327463 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014969 exon11 c.G2062A p.V688M . . . CELSR2 1952 broad.mit.edu 36 1 109608711 109608711 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001408 exon11 c.C5402A p.P1801Q . . . CELSR2 1952 broad.mit.edu 36 1 109615818 109615818 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001408 exon28 c.G7877A p.R2626H . . . RAP1A 5906 broad.mit.edu 36 1 112048507 112048507 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010935 exon7 c.G344A p.G115D . . . AMPD1 270 broad.mit.edu 36 1 115017398 115017398 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000036 exon16 c.G2203A p.G735S . . . C1orf161 126868 broad.mit.edu 36 1 116471753 116471753 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152367 exon5 c.C625T p.R209C . . . UBE2J2 118424 broad.mit.edu 36 1 1180664 1180664 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194315 exon8 c.G610T p.D204Y . . . PLOD1 5351 broad.mit.edu 36 1 11939593 11939593 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000302 exon7 c.G676A p.V226M . . . PRAMEF1 65121 broad.mit.edu 36 1 12776936 12776936 + Silent SNP G A A rs1063766 unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023013 exon3 c.G573A p.P191P . . . PRDM2 7799 broad.mit.edu 36 1 13979603 13979603 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007257 exon3 c.G2123T p.G708V . . . NBPF15 284565 broad.mit.edu 36 1 146861178 146861178 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102663 exon16 c.G1927A p.A643T . . . SV2A 9900 broad.mit.edu 36 1 148147988 148147988 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014849 exon6 c.C1168T p.R390X . . . ARNT 405 broad.mit.edu 36 1 149056236 149056236 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001197325 exon16 c.T1600A p.F534I . . . TMOD4 29765 broad.mit.edu 36 1 149413592 149413592 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013353 exon3 c.C179T p.T60M . . . POGZ 23126 broad.mit.edu 36 1 149647225 149647225 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145796 exon13 c.C2065T p.R689X . . . CGN 57530 broad.mit.edu 36 1 149773206 149773206 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020770 exon15 c.C2874T p.D958D . . . LINGO4 339398 broad.mit.edu 36 1 150040877 150040877 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004432 exon2 c.G928A p.A310T . . . TCHH 7062 broad.mit.edu 36 1 150347841 150347841 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007113 exon2 c.A4476G p.Q1492Q . . . UBAP2L 9898 broad.mit.edu 36 1 152490164 152490164 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014847 exon13 c.G1237A p.A413T . . . KAZ 23254 broad.mit.edu 36 1 15300850 15300850 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201628 exon11 c.G1772A p.S591N . . . DCST2 127579 broad.mit.edu 36 1 153262298 153262298 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144622 exon14 c.C2024A p.P675H . . . DCST2 127579 broad.mit.edu 36 1 153263641 153263641 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144622 exon11 c.T1673C p.L558P . . . FAM189B 10712 broad.mit.edu 36 1 153487027 153487027 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198264 exon6 c.C886T p.P296S . . . YY1AP1 55249 broad.mit.edu 36 1 153905103 153905103 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198906 exon9 c.G1016A p.R339H . . . RXFP4 339403 broad.mit.edu 36 1 154178746 154178746 + Silent SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181885 exon1 c.A622C p.R208R . . . ARHGEF11 9826 broad.mit.edu 36 1 155205718 155205718 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198236 exon10 c.C805T p.R269C . . . KIRREL 55243 broad.mit.edu 36 1 156326132 156326132 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018240 exon10 c.G1172T p.G391V . . . IFI16 3428 broad.mit.edu 36 1 157290103 157290103 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005531 exon10 c.G2074T p.G692W . . . CADM3 57863 broad.mit.edu 36 1 157430378 157430378 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021189 exon6 c.G717A p.A239A . . . OR10J3 441911 broad.mit.edu 36 1 157550230 157550230 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004467 exon1 c.C844T p.H282Y . . . OR10J3 441911 broad.mit.edu 36 1 157550386 157550386 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004467 exon1 c.G688A p.A230T . . . OR10J5 127385 broad.mit.edu 36 1 157772124 157772124 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004469 exon1 c.C298T p.Q100X . . . FCRL6 343413 broad.mit.edu 36 1 158050668 158050668 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004310 exon8 c.T1109C p.V370A . . . IGSF9 57549 broad.mit.edu 36 1 158169024 158169024 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135050 exon10 c.G1147A p.A383T . . . ATP1A2 477 broad.mit.edu 36 1 158365178 158365178 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000702 exon9 c.G1130A p.G377D . . . C1orf192 257177 broad.mit.edu 36 1 159602891 159602891 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013625 exon2 c.T52C p.Y18H . . . FCGR3B 2215 broad.mit.edu 36 1 159866385 159866385 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000570 exon3 c.T126C p.S42S . . . SPEN 23013 broad.mit.edu 36 1 16133690 16133690 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015001 exon11 c.A8368G p.M2790V . . . UCK2 7371 broad.mit.edu 36 1 164126070 164126070 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012474 exon2 c.C105A p.S35S . . . DUSP27 92235 broad.mit.edu 36 1 165361977 165361977 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080426 exon5 c.C985A p.L329M . . . GPR161 23432 broad.mit.edu 36 1 166323557 166323557 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153832 exon7 c.T1214C p.M405T . . . F5 2153 broad.mit.edu 36 1 167750209 167750209 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000130 exon25 c.T6641C p.L2214P . . . C1orf112 55732 broad.mit.edu 36 1 168065047 168065047 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018186 exon13 c.G1147A p.V383I . . . SCYL3 57147 broad.mit.edu 36 1 168098505 168098505 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181093 exon10 c.T1013C p.V338A . . . C1orf129 80133 broad.mit.edu 36 1 169231210 169231210 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025063 exon13 c.C1251T p.A417A . . . BAT2L2 23215 broad.mit.edu 36 1 169815150 169815150 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015172 exon27 c.A7187C p.H2396P . . . METTL13 51603 broad.mit.edu 36 1 170019667 170019667 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014955 exon2 c.G60A p.T20T . . . PADI3 51702 broad.mit.edu 36 1 17458773 17458773 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016233 exon2 c.G206A p.R69H . . . PAPPA2 60676 broad.mit.edu 36 1 174792086 174792086 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020318 exon2 c.T5G p.M2R . . . ASTN1 460 broad.mit.edu 36 1 175170041 175170041 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004319 exon16 c.G2541A p.A847A . . . ASTN1 460 broad.mit.edu 36 1 175268569 175268569 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004319 exon3 c.G511A p.V171M . . . FAM5B 57795 broad.mit.edu 36 1 175493071 175493071 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021165 exon4 c.C597T p.A199A . . . QSOX1 5768 broad.mit.edu 36 1 178432125 178432125 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002826 exon12 c.A1574G p.E525G . . . CACNA1E 777 broad.mit.edu 36 1 179969411 179969411 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000721 exon21 c.G3164A p.C1055Y . . . HMCN1 83872 broad.mit.edu 36 1 184281446 184281446 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon41 c.C6308T p.P2103L . . . HMCN1 83872 broad.mit.edu 36 1 184414214 184414214 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon104 c.G15987A p.Q5329Q . . . KLHDC7A 127707 broad.mit.edu 36 1 18682083 18682083 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152375 exon1 c.C2021T p.A674V . . . CFH 3075 broad.mit.edu 36 1 194979365 194979365 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000186 exon20 c.A3294G p.E1098E . . . CRB1 23418 broad.mit.edu 36 1 195564551 195564551 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201253 exon2 c.C447T p.H149H . . . CAPZB 832 broad.mit.edu 36 1 19556628 19556628 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004930 exon5 c.G346A p.V116I . . . TNNI1 7135 broad.mit.edu 36 1 199647235 199647235 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003281 exon6 c.G329A p.R110H . . . LMOD1 25802 broad.mit.edu 36 1 200135269 200135269 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012134 exon2 c.C1495T p.P499S . . . PPFIA4 8497 broad.mit.edu 36 1 201292193 201292193 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015053 exon5 c.C656T p.S219F . . . ADORA1 134 broad.mit.edu 36 1 201401234 201401234 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001048230 exon3 c.G564T p.W188C . . . PRELP 5549 broad.mit.edu 36 1 201719368 201719368 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002725 exon2 c.G433A p.V145M . . . PLEKHA6 22874 broad.mit.edu 36 1 202464842 202464842 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014935 exon19 c.G2597A p.R866H . . . CNTN2 6900 broad.mit.edu 36 1 203300418 203300418 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005076 exon12 c.G1436A p.S479N . . . PM20D1 148811 broad.mit.edu 36 1 204085717 204085717 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152491 exon1 c.C107T p.A36V . . . C1orf116 79098 broad.mit.edu 36 1 205263105 205263105 + Silent SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023938 exon4 c.A627C p.P209P . . . CD55 1604 broad.mit.edu 36 1 205566754 205566754 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000574 exon5 c.C613T p.L205F . . . LOC642587 642587 broad.mit.edu 36 1 207672217 207672217 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001104548 exon4 c.A209G p.E70G . . . TRAF3IP3 80342 broad.mit.edu 36 1 208000080 208000080 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025228 exon3 c.C73T p.R25C . . . DTL 51514 broad.mit.edu 36 1 210340368 210340368 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016448 exon14 c.C1413A p.T471T . . . FAM71A 149647 broad.mit.edu 36 1 210866091 210866091 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153606 exon1 c.G1249A p.A417T . . . CENPF 1063 broad.mit.edu 36 1 212860674 212860674 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016343 exon6 c.G627A p.R209R . . . USH2A 7399 broad.mit.edu 36 1 213915445 213915445 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon63 c.C12431G p.A4144G . . . RRP15 51018 broad.mit.edu 36 1 216570948 216570948 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016052 exon5 c.G741A p.T247T . . . NBPF3 84224 broad.mit.edu 36 1 21682331 21682331 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032264 exon15 c.G1767A p.Q589Q . . . HLX 3142 broad.mit.edu 36 1 219120122 219120122 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021958 exon1 c.G300A p.A100A . . . TP53BP2 7159 broad.mit.edu 36 1 222050665 222050665 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031685 exon13 c.C2199T p.N733N . . . PARP1 142 broad.mit.edu 36 1 224643052 224643052 + Silent SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001618 exon5 c.A645C p.G215G . . . C1orf95 375057 broad.mit.edu 36 1 224851206 224851206 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003665 exon2 c.C283T p.L95L . . . ITPKB 3707 broad.mit.edu 36 1 224991402 224991402 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002221 exon2 c.C381T p.A127A . . . OBSCN 84033 broad.mit.edu 36 1 226534558 226534558 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052843 exon29 c.C7719T p.G2573G . . . EPHA8 2046 broad.mit.edu 36 1 22768412 22768412 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020526 exon2 c.G138A p.W46X . . . AGT 183 broad.mit.edu 36 1 228913127 228913127 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000029 exon2 c.T93C p.A31A . . . DISC1 27185 broad.mit.edu 36 1 230228901 230228901 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164540 exon10 c.G2039T p.S680I . . . KIAA1383 54627 broad.mit.edu 36 1 231007851 231007851 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019090 exon1 c.G459A p.S153S . . . KIAA1804 84451 broad.mit.edu 36 1 231564502 231564502 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032435 exon5 c.G1392T p.E464D . . . LGALS8 3964 broad.mit.edu 36 1 234773540 234773540 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201544 exon8 c.G607A p.V203I . . . HNRNPR 10236 broad.mit.edu 36 1 23510080 23510080 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102399 exon10 c.T1062C p.G354G . . . RYR2 6262 broad.mit.edu 36 1 235778404 235778404 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon26 c.T2957A p.I986N . . . FMN2 56776 broad.mit.edu 36 1 238437690 238437690 + Silent SNP C T T rs71646887 unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020066 exon5 c.C2955T p.G985G . . . EXO1 9156 broad.mit.edu 36 1 240119430 240119430 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130398 exon16 c.C2446A p.P816T . . . OR1C1 26188 broad.mit.edu 36 1 245987951 245987951 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012353 exon1 c.C381T p.C127C . . . OR2L13 284521 broad.mit.edu 36 1 246329317 246329317 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175911 exon3 c.A17G p.H6R . . . OR2M5 127059 broad.mit.edu 36 1 246375586 246375586 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004690 exon1 c.C514T p.R172W . . . OR2M4 26245 broad.mit.edu 36 1 246469221 246469221 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017504 exon1 c.A368G p.Y123C . . . OR2T11 127077 broad.mit.edu 36 1 246856285 246856285 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001964 exon1 c.C768T p.Y256Y . . . SRRM1 10250 broad.mit.edu 36 1 24868428 24868428 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005839 exon14 c.T1967C p.L656S . . . RHCE 6006 broad.mit.edu 36 1 25584921 25584921 + Missense_Mutation SNP A C C rs1132768 unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138617 exon5 c.T626G p.V209G . . . ARID1A 8289 broad.mit.edu 36 1 26930325 26930325 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006015 exon3 c.G1446A p.Q482Q . . . FAM46B 115572 broad.mit.edu 36 1 27211501 27211501 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052943 exon1 c.C248T p.P83L . . . SYTL1 84958 broad.mit.edu 36 1 27549507 27549507 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032872 exon10 c.C913T p.R305C . . . FGR 2268 broad.mit.edu 36 1 27822982 27822982 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042747 exon3 c.G33A p.P11P . . . SESN2 83667 broad.mit.edu 36 1 28470892 28470892 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031459 exon3 c.T277C p.F93L . . . ACTRT2 140625 broad.mit.edu 36 1 2928339 2928339 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080431 exon1 c.C229T p.R77C . . . PRDM16 63976 broad.mit.edu 36 1 3318340 3318340 + Silent SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022114 exon9 c.G1719T p.A573A . . . CSMD2 114784 broad.mit.edu 36 1 33861598 33861598 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052896 exon36 c.A5561G p.D1854G . . . MEGF6 1953 broad.mit.edu 36 1 3501843 3501843 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001409 exon3 c.G295C p.V99L . . . WDR8 49856 broad.mit.edu 36 1 3545242 3545242 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017818 exon4 c.G344A p.R115Q . . . OSCP1 127700 broad.mit.edu 36 1 36677026 36677026 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206837 exon2 c.A185G p.Y62C . . . PPIE 10450 broad.mit.edu 36 1 39982125 39982125 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195007 exon6 c.C326T p.T109M . . . CAP1 10487 broad.mit.edu 36 1 40302558 40302558 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006367 exon5 c.C367A p.R123R . . . RLF 6018 broad.mit.edu 36 1 40433969 40433969 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012421 exon4 c.A553G p.K185E . . . HIVEP3 59269 broad.mit.edu 36 1 41821047 41821047 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024503 exon4 c.A2009G p.Q670R . . . GUCA2B 2981 broad.mit.edu 36 1 42393088 42393088 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007102 exon2 c.G241A p.A81T . . . ERMAP 114625 broad.mit.edu 36 1 43080957 43080957 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017922 exon12 c.G895A p.V299M . . . PTPRF 5792 broad.mit.edu 36 1 43842250 43842250 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130440 exon15 c.G2813A p.R938H . . . ST3GAL3 6487 broad.mit.edu 36 1 44136538 44136538 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_174964 exon7 c.C487T p.L163L . . . LRRC41 10489 broad.mit.edu 36 1 46523759 46523759 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006369 exon4 c.C1357T p.L453L . . . ATPAF1 64756 broad.mit.edu 36 1 46874105 46874105 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022745 exon9 c.T917C p.V306A . . . FAF1 11124 broad.mit.edu 36 1 50821965 50821965 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007051 exon11 c.C978T p.N326N . . . ORC1 4998 broad.mit.edu 36 1 52622896 52622896 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190818 exon11 c.G1669T p.A557S . . . ECHDC2 55268 broad.mit.edu 36 1 53150014 53150014 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198962 exon2 c.G158A p.R53H . . . LRP8 7804 broad.mit.edu 36 1 53509569 53509569 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017522 exon6 c.A657G p.S219S . . . C8A 731 broad.mit.edu 36 1 57155941 57155941 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000562 exon11 c.G1719A p.S573S . . . CHD5 26038 broad.mit.edu 36 1 6124810 6124810 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015557 exon15 c.G2401A p.A801T . . . DOCK7 85440 broad.mit.edu 36 1 62751836 62751836 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033407 exon32 c.C4056T p.S1352S . . . DOCK7 85440 broad.mit.edu 36 1 62781960 62781960 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033407 exon23 c.G2811A p.T937T . . . DNAJC11 55735 broad.mit.edu 36 1 6627240 6627240 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018198 exon10 c.C1062T p.S354S . . . MIER1 57708 broad.mit.edu 36 1 67164462 67164462 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077700 exon2 c.G117A p.W39X . . . WLS 79971 broad.mit.edu 36 1 68336921 68336921 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002292 exon12 c.C1614T p.N538N . . . RPE65 6121 broad.mit.edu 36 1 68669778 68669778 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000329 exon11 c.C1207T p.L403L . . . NEGR1 257194 broad.mit.edu 36 1 71831103 71831103 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173808 exon6 c.A925C p.S309R . . . TNNI3K 51086 broad.mit.edu 36 1 74569750 74569750 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199327 exon8 c.C776T p.A259V . . . FUBP1 8880 broad.mit.edu 36 1 78198637 78198637 + Silent SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003902 exon15 c.A1476T p.G492G . . . SLC45A1 50651 broad.mit.edu 36 1 8326525 8326525 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080397 exon8 c.T2112C p.S704S . . . MCOLN2 255231 broad.mit.edu 36 1 85179155 85179155 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153259 exon8 c.C955T p.R319W . . . C1orf52 148423 broad.mit.edu 36 1 85496817 85496817 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198077 exon2 c.A453G p.E151E . . . COL24A1 255631 broad.mit.edu 36 1 86021821 86021821 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152890 exon51 c.A4230C p.E1410D . . . CLCA2 9635 broad.mit.edu 36 1 86693617 86693617 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006536 exon14 c.C2651T p.A884V . . . PKN2 5586 broad.mit.edu 36 1 89071638 89071638 + Silent SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006256 exon22 c.T2874G p.T958T . . . CA6 765 broad.mit.edu 36 1 8931972 8931972 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001215 exon2 c.C143T p.S48L . . . GBP2 2634 broad.mit.edu 36 1 89352374 89352374 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004120 exon7 c.G1062A p.L354L . . . LRRC8C 84230 broad.mit.edu 36 1 89951626 89951626 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032270 exon3 c.T909C p.Y303Y . . . BARHL2 343472 broad.mit.edu 36 1 90950688 90950688 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020063 exon3 c.T933C p.F311F . . . ZNF644 84146 broad.mit.edu 36 1 91178527 91178527 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201269 exon3 c.C972T p.D324D . . . RPAP2 79871 broad.mit.edu 36 1 92574557 92574557 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024813 exon10 c.T1604C p.L535P . . . ARHGAP29 9411 broad.mit.edu 36 1 94427431 94427431 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004815 exon14 c.A1505T p.D502V . . . PTBP2 58155 broad.mit.edu 36 1 97051047 97051047 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021190 exon12 c.G1363A p.A455T . . . CLSTN1 22883 broad.mit.edu 36 1 9716146 9716146 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014944 exon15 c.G2297T p.R766L . . . LPPR4 9890 broad.mit.edu 36 1 99544756 99544756 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014839 exon7 c.C1894T p.P632S . . . LPPR4 9890 broad.mit.edu 36 1 99544974 99544974 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014839 exon7 c.C2112T p.R704R . . . GSTM3 2947 broad.mit.edu 36 1 110081802 110081802 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000849 exon7 c.467delA p.K156fs . . . RPRD2 23248 broad.mit.edu 36 1 148685374 148685374 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015203 exon7 c.743delC p.S248fs . . . PIP5K1A 8394 broad.mit.edu 36 1 149473538 149473538 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001135636 exon7 c.845delT p.L282fs . . . PCP4L1 654790 broad.mit.edu 36 1 159520778 159520780 + In_Frame_Del DEL GGA - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 GGA GGA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001102566 exon3 c.90_92del p.30_31del . . . SPEN 23013 broad.mit.edu 36 1 16132067 16132067 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015001 exon11 c.6745delC p.P2249fs . . . POGK 57645 broad.mit.edu 36 1 165085123 165085123 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017542 exon5 c.683delA p.E228fs . . . CD247 919 broad.mit.edu 36 1 165675238 165675238 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198053 exon3 c.186delC p.P62fs . . . PQLC2 54896 broad.mit.edu 36 1 19525431 19525431 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017765 exon6 c.488delG p.R163fs . . . UBE2T 29089 broad.mit.edu 36 1 200571447 200571447 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014176 exon2 c.59delC p.P20fs . . . CR1 1378 broad.mit.edu 36 1 205763596 205763596 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000651 exon5 c.505delC p.P169fs . . . DTL 51514 broad.mit.edu 36 1 210320609 210320609 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016448 exon13 c.1155delA p.L385fs . . . FLVCR1 28982 broad.mit.edu 36 1 211112747 211112747 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014053 exon3 c.988delA p.K330fs . . . HSPG2 3339 broad.mit.edu 36 1 22040359 22040359 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005529 exon71 c.9335delC p.P3112fs . . . CAPN2 824 broad.mit.edu 36 1 222024233 222024236 + Splice_Site DEL AAGT - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 AAGT AAGT AAGT - AAGT AAGT Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001748 exon17 c.1823_1824del p.608_608del . . . WNT9A 7483 broad.mit.edu 36 1 226178577 226178577 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003395 exon3 c.500delG p.G167fs . . . C1orf124 83932 broad.mit.edu 36 1 229555507 229555507 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032018 exon5 c.1247delT p.V416fs . . . CHML 1122 broad.mit.edu 36 1 239864702 239864702 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001821 exon1 c.990delA p.K330fs . . . FAF1 11124 broad.mit.edu 36 1 51026370 51026370 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007051 exon4 c.257delC p.P86fs . . . LRRIQ3 127255 broad.mit.edu 36 1 74280069 74280069 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105659 exon7 c.1134delT p.F378fs . . . TTLL7 79739 broad.mit.edu 36 1 84155898 84155898 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024686 exon14 c.1564delA p.T522fs . . . ODF2L 57489 broad.mit.edu 36 1 86587082 86587082 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184766 exon16 c.1715delA p.N572fs . . . ProSAPiP1 9762 broad.mit.edu 36 20 3094923 3094924 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014731 exon2 c.543_544insC p.P181fs . . . SPTLC3 55304 broad.mit.edu 36 20 13019817 13019817 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018327 exon5 c.G694A p.A232T . . . C20orf7 79133 broad.mit.edu 36 20 13745788 13745788 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039375 exon10 c.G886A p.A296T . . . MACROD2 140733 broad.mit.edu 36 20 15896255 15896255 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033087 exon9 c.G260A p.R87H . . . SEC23B 10483 broad.mit.edu 36 20 18471019 18471019 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032986 exon13 c.G1484A p.R495H . . . SLC24A3 57419 broad.mit.edu 36 20 19612857 19612857 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020689 exon11 c.C939T p.D313D . . . GGTLC1 92086 broad.mit.edu 36 20 23914824 23914824 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178312 exon3 c.C193T p.R65C . . . KIF3B 9371 broad.mit.edu 36 20 30381780 30381780 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004798 exon8 c.C2144T p.A715V . . . ITPA 3704 broad.mit.edu 36 20 3147166 3147166 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033453 exon6 c.T299G p.L100R . . . TRIB3 57761 broad.mit.edu 36 20 316852 316852 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021158 exon2 c.C198T p.S66S . . . MYH7B 57644 broad.mit.edu 36 20 33053535 33053535 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020884 exon44 c.G5926A p.A1976T . . . DLGAP4 22839 broad.mit.edu 36 20 34558711 34558711 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183006 exon2 c.A221C p.D74A . . . TGIF2 60436 broad.mit.edu 36 20 34652758 34652758 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199513 exon3 c.G224A p.R75Q . . . SRC 6714 broad.mit.edu 36 20 35459625 35459625 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005417 exon9 c.G813A p.R271R . . . TGM2 7052 broad.mit.edu 36 20 36194286 36194286 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004613 exon11 c.A1646G p.E549G . . . CHD6 84181 broad.mit.edu 36 20 39550625 39550625 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032221 exon13 c.G1714A p.V572I . . . CHD6 84181 broad.mit.edu 36 20 39560240 39560240 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032221 exon7 c.A956G p.Y319C . . . ADRA1D 146 broad.mit.edu 36 20 4150289 4150289 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000678 exon2 c.G1600A p.A534T . . . MYBL2 4605 broad.mit.edu 36 20 41764948 41764948 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002466 exon8 c.G1356A p.S452S . . . TOX2 84969 broad.mit.edu 36 20 42116527 42116527 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032883 exon6 c.G700A p.V234M . . . YWHAB 7529 broad.mit.edu 36 20 42963757 42963757 + Missense_Mutation SNP C T T rs11544163 unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139323 exon2 c.C169T p.R57C . . . WFDC8 90199 broad.mit.edu 36 20 43617871 43617871 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130896 exon4 c.C328T p.R110C . . . PLTP 5360 broad.mit.edu 36 20 43964545 43964545 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006227 exon11 c.G1048A p.V350I . . . PLTP 5360 broad.mit.edu 36 20 43966902 43966902 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006227 exon10 c.C886A p.P296T . . . MMP9 4318 broad.mit.edu 36 20 44074284 44074284 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004994 exon7 c.G1099A p.G367R . . . PRND 23627 broad.mit.edu 36 20 4653653 4653653 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012409 exon2 c.C456T p.G152G . . . PREX1 57580 broad.mit.edu 36 20 46705253 46705253 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020820 exon19 c.G2191A p.V731I . . . ARFGEF2 10564 broad.mit.edu 36 20 47026090 47026090 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006420 exon14 c.G1905A p.E635E . . . ZNF217 7764 broad.mit.edu 36 20 51632029 51632029 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006526 exon1 c.C744T p.S248S . . . GPCPD1 56261 broad.mit.edu 36 20 5504563 5504563 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019593 exon9 c.G767A p.C256Y . . . CTCFL 140690 broad.mit.edu 36 20 55532449 55532449 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_080618 exon2 c.G219T p.E73D . . . CDH26 60437 broad.mit.edu 36 20 58002859 58002859 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177980 exon11 c.C1586T p.P529L . . . CHGB 1114 broad.mit.edu 36 20 5851379 5851379 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001819 exon4 c.G589A p.A197T . . . ARFGAP1 55738 broad.mit.edu 36 20 61379942 61379942 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_175609 exon6 c.G472A p.A158T . . . C20orf195 79025 broad.mit.edu 36 20 61658225 61658225 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024059 exon2 c.C765T p.C255C . . . ASXL1 171023 broad.mit.edu 36 20 30486286 30486286 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015338 exon12 c.2110delG p.G704fs . . . PLUNC 51297 broad.mit.edu 36 20 31289626 31289626 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016583 exon3 c.265delG p.G89fs . . . SIGLEC1 6614 broad.mit.edu 36 20 3622302 3622302 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_023068 exon13 c.3300delG p.G1100fs . . . RALGAPB 57148 broad.mit.edu 36 20 36610750 36610750 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020336 exon20 c.2907delT p.D969fs . . . SEMG2 6407 broad.mit.edu 36 20 43284175 43284175 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003008 exon2 c.488delA p.E163fs . . . CXADR 1525 broad.mit.edu 36 21 17841377 17841377 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001338 exon2 c.C205T p.Q69X . . . GABPA 2551 broad.mit.edu 36 21 26058461 26058461 + Missense_Mutation SNP C T T rs2829897 byCluster;byFrequency;bySubmitter;byHapMap TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001197297 exon8 c.C872T p.A291V . . . ADAMTS1 9510 broad.mit.edu 36 21 27134192 27134192 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006988 exon6 c.C1725T p.C575C . . . ADAMTS5 11096 broad.mit.edu 36 21 27226334 27226334 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007038 exon6 c.A1909G p.N637D . . . MRAP 56246 broad.mit.edu 36 21 32600905 32600905 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178817 exon4 c.G190A p.A64T . . . SYNJ1 8867 broad.mit.edu 36 21 32951078 32951078 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003895 exon21 c.T2702C p.V901A . . . SON 6651 broad.mit.edu 36 21 33845433 33845433 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032195 exon3 c.C2026T p.P676S . . . SLC5A3 6526 broad.mit.edu 36 21 34389926 34389926 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006933 exon2 c.C559A p.L187M . . . RUNX1 861 broad.mit.edu 36 21 35174879 35174879 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001754 exon5 c.T353C p.V118A . . . B3GALT5 10317 broad.mit.edu 36 21 39954611 39954611 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033171 exon4 c.G255A p.M85I . . . SLC37A1 54020 broad.mit.edu 36 21 42868009 42868009 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018964 exon19 c.G1436C p.G479A . . . MCM3AP 8888 broad.mit.edu 36 21 46509806 46509806 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003906 exon12 c.C3091T p.Q1031X . . . PCNT 5116 broad.mit.edu 36 21 46676143 46676143 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006031 exon38 c.C8337T p.C2779C . . . DIP2A 23181 broad.mit.edu 36 21 46798594 46798594 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146114 exon24 c.C2923T p.L975L . . . PRMT2 3275 broad.mit.edu 36 21 46888788 46888788 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001535 exon4 c.C287T p.T96M . . . MRAP 56246 broad.mit.edu 36 21 32606143 32606143 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_178817 exon5 c.484delC p.P162fs . . . IFNAR1 3454 broad.mit.edu 36 21 33629724 33629724 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000629 exon2 c.101delA p.Q34fs . . . MKL1 57591 broad.mit.edu 36 22 39146487 39146488 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020831 exon11 c.921_922insC p.P307fs . . . CECR2 27443 broad.mit.edu 36 22 16409035 16409035 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031413 exon16 c.G3994A p.G1332S . . . DGCR2 9993 broad.mit.edu 36 22 17435633 17435633 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173534 exon2 c.C185T p.A62V . . . UFD1L 7353 broad.mit.edu 36 22 17832787 17832787 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005659 exon6 c.G433A p.A145T . . . CDC45 8318 broad.mit.edu 36 22 17851394 17851394 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178010 exon5 c.C352T p.L118F . . . C22orf25 128989 broad.mit.edu 36 22 18432091 18432091 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152906 exon9 c.C737T p.A246V . . . UBE2L3 7332 broad.mit.edu 36 22 20295226 20295226 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003347 exon3 c.C204T p.I68I . . . TOP3B 8940 broad.mit.edu 36 22 20644767 20644767 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003935 exon14 c.T1580C p.V527A . . . ZNF280B 140883 broad.mit.edu 36 22 21173277 21173277 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080764 exon4 c.A447G p.T149T . . . BCR 613 broad.mit.edu 36 22 21926095 21926095 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021574 exon2 c.G1389A p.S463S . . . MMP11 4320 broad.mit.edu 36 22 22453268 22453268 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005940 exon5 c.A839G p.N280S . . . CABIN1 23523 broad.mit.edu 36 22 22762558 22762558 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199281 exon3 c.G25A p.A9T . . . ADORA2A 135 broad.mit.edu 36 22 23167097 23167097 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000675 exon3 c.C879T p.R293R . . . SGSM1 129049 broad.mit.edu 36 22 23624233 23624233 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098497 exon19 c.C2317T p.R773W . . . ASPHD2 57168 broad.mit.edu 36 22 25169163 25169163 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020437 exon4 c.G1101A p.P367P . . . INPP5J 27124 broad.mit.edu 36 22 29852959 29852959 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002837 exon5 c.A443G p.Y148C . . . PLA2G3 50487 broad.mit.edu 36 22 29866149 29866149 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015715 exon1 c.G192A p.A64A . . . PATZ1 23598 broad.mit.edu 36 22 30071325 30071325 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032051 exon1 c.G264A p.G88G . . . C22orf28 51493 broad.mit.edu 36 22 31138069 31138069 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014306 exon1 c.C75T p.G25G . . . TIMP3 7078 broad.mit.edu 36 22 31584108 31584108 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000362 exon4 c.C421A p.L141M . . . CSF2RB 1439 broad.mit.edu 36 22 35663844 35663844 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000395 exon14 c.T2048C p.V683A . . . DMC1 11144 broad.mit.edu 36 22 37275893 37275893 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007068 exon8 c.T477C p.I159I . . . MCHR1 2847 broad.mit.edu 36 22 39407007 39407007 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005297 exon2 c.C398T p.A133V . . . ST13 6767 broad.mit.edu 36 22 39576784 39576784 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003932 exon2 c.G157A p.E53K . . . WBP2NL 164684 broad.mit.edu 36 22 40752802 40752802 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152613 exon6 c.G601A p.V201I . . . FAM109B 150368 broad.mit.edu 36 22 40803389 40803389 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002034 exon3 c.G146A p.G49D . . . PACSIN2 11252 broad.mit.edu 36 22 41614739 41614739 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184971 exon5 c.G463A p.A155T . . . PARVG 64098 broad.mit.edu 36 22 42915040 42915040 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001137606 exon5 c.C196T p.R66C . . . IL17REL 400935 broad.mit.edu 36 22 48779873 48779873 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001694 exon9 c.G575A p.R192Q . . . MOV10L1 54456 broad.mit.edu 36 22 48941574 48941574 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164104 exon25 c.G3379A p.G1127R . . . TUBGCP6 85378 broad.mit.edu 36 22 49001180 49001180 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020461 exon16 c.G3735A p.V1245V . . . ARSA 410 broad.mit.edu 36 22 49412187 49412187 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085428 exon3 c.G367A p.D123N . . . TAB1 10454 broad.mit.edu 36 22 38154119 38154119 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153497 exon10 c.1292delC p.T431fs . . . SERPINE2 5270 broad.mit.edu 36 2 224553313 224553314 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001136530 exon7 c.1067_1068insA p.I356fs . . . UGT1A10 54575 broad.mit.edu 36 2 234210415 234210416 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_019075 exon1 c.508_509insG p.R170fs . . . UBXN2A 165324 broad.mit.edu 36 2 24076203 24076204 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181713 exon7 c.742_743insA p.Q248fs . . . SEPT10 151011 broad.mit.edu 36 2 109659116 109659117 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . IL18R1 8809 broad.mit.edu 36 2 102354945 102354945 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003855 exon3 c.T403A p.F135I . . . C2orf49 79074 broad.mit.edu 36 2 105322586 105322586 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024093 exon2 c.A214G p.K72E . . . UXS1 80146 broad.mit.edu 36 2 106095647 106095647 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025076 exon10 c.G751A p.V251M . . . ST6GAL2 84620 broad.mit.edu 36 2 106789609 106789609 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142351 exon6 c.C1547T p.A516V . . . ST6GAL2 84620 broad.mit.edu 36 2 106816954 106816954 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142351 exon3 c.C1024T p.R342C . . . SLC20A1 6574 broad.mit.edu 36 2 113133430 113133430 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005415 exon8 c.C1227T p.D409D . . . GREB1 9687 broad.mit.edu 36 2 11638309 11638309 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148903 exon7 c.C801T p.N267N . . . GREB1 9687 broad.mit.edu 36 2 11675928 11675928 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014668 exon22 c.G3476T p.R1159M . . . LPIN1 23175 broad.mit.edu 36 2 11829089 11829089 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145693 exon4 c.C429T p.S143S . . . CNTNAP5 129684 broad.mit.edu 36 2 124998393 124998393 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130773 exon9 c.C1368T p.N456N . . . UGGT1 56886 broad.mit.edu 36 2 128587259 128587259 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020120 exon6 c.G653C p.S218T . . . POTEF 728378 broad.mit.edu 36 2 130594532 130594532 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099771 exon3 c.G27A p.P9P . . . TUBA3E 112714 broad.mit.edu 36 2 130669129 130669129 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207312 exon3 c.G368A p.R123H . . . CCDC74A 90557 broad.mit.edu 36 2 132006810 132006810 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138770 exon5 c.C862A p.L288M . . . GPR39 2863 broad.mit.edu 36 2 132891574 132891574 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001508 exon1 c.C489T p.S163S . . . GPR39 2863 broad.mit.edu 36 2 132891877 132891877 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001508 exon1 c.G792A p.P264P . . . TMEM163 81615 broad.mit.edu 36 2 134932100 134932100 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030923 exon7 c.G782A p.G261D . . . SPOPL 339745 broad.mit.edu 36 2 139024542 139024542 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001664 exon3 c.C98T p.S33F . . . LRP1B 53353 broad.mit.edu 36 2 140961693 140961693 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018557 exon58 c.G9206A p.R3069H . . . LRP1B 53353 broad.mit.edu 36 2 142604705 142604705 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018557 exon1 c.A64G p.T22A . . . ARHGAP15 55843 broad.mit.edu 36 2 143909694 143909694 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018460 exon7 c.A529G p.I177V . . . MBD5 55777 broad.mit.edu 36 2 148943438 148943438 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018328 exon9 c.A1456G p.I486V . . . NEB 4703 broad.mit.edu 36 2 152119734 152119734 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon125 c.C19385T p.P6462L . . . CACNB4 785 broad.mit.edu 36 2 152435309 152435309 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145798 exon8 c.G681A p.P227P . . . ERMN 57471 broad.mit.edu 36 2 157890408 157890408 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009959 exon2 c.C32T p.P11L . . . SCN9A 6335 broad.mit.edu 36 2 166764421 166764421 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002977 exon27 c.C4941T p.Y1647Y . . . XIRP2 129446 broad.mit.edu 36 2 167808459 167808459 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.C1645T p.R549W . . . ABCB11 8647 broad.mit.edu 36 2 169497263 169497263 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003742 exon24 c.C3083T p.A1028V . . . LRP2 4036 broad.mit.edu 36 2 169839974 169839974 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon14 c.G1793A p.G598D . . . PPIG 9360 broad.mit.edu 36 2 170201298 170201298 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004792 exon14 c.C1284T p.D428D . . . DCAF17 80067 broad.mit.edu 36 2 172008313 172008313 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025000 exon3 c.C265T p.P89S . . . SLC25A12 8604 broad.mit.edu 36 2 172399603 172399603 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003705 exon7 c.T631G p.S211A . . . HAT1 8520 broad.mit.edu 36 2 172556424 172556424 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003642 exon11 c.T1172C p.I391T . . . WIPF1 7456 broad.mit.edu 36 2 175140128 175140128 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077269 exon7 c.C1372G p.P458A . . . MTX2 10651 broad.mit.edu 36 2 176903632 176903632 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006554 exon9 c.G618A p.K206K . . . HNRNPA3 220988 broad.mit.edu 36 2 177790816 177790816 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194247 exon8 c.G958A p.G320S . . . TTC30A 92104 broad.mit.edu 36 2 178191288 178191288 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152275 exon1 c.C388T p.P130S . . . TTN 7273 broad.mit.edu 36 2 179105066 179105066 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon186 c.G77326A p.A25776T . . . TTN 7273 broad.mit.edu 36 2 179105817 179105817 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon186 c.C76575T p.N25525N . . . TTN 7273 broad.mit.edu 36 2 179110719 179110719 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon183 c.G72265A p.A24089T . . . TTN 7273 broad.mit.edu 36 2 179134370 179134370 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.A57539G p.N19180S . . . TTN 7273 broad.mit.edu 36 2 179137459 179137459 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.C54450T p.A18150A . . . TTN 7273 broad.mit.edu 36 2 179160717 179160717 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon134 c.G36369T p.Q12123H . . . TTN 7273 broad.mit.edu 36 2 179164475 179164475 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon132 c.C33027T p.C11009C . . . TTN 7273 broad.mit.edu 36 2 179174385 179174385 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon115 c.A28389G p.K9463K . . . CWC22 57703 broad.mit.edu 36 2 180523521 180523521 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020943 exon19 c.C2103T p.S701S . . . NAB1 4664 broad.mit.edu 36 2 191258529 191258529 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005966 exon8 c.G1178T p.R393M . . . MYO1B 4430 broad.mit.edu 36 2 191963370 191963370 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012223 exon18 c.C1889T p.A630V . . . HECW2 57520 broad.mit.edu 36 2 196880907 196880907 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020760 exon11 c.G2582A p.R861Q . . . SF3B1 23451 broad.mit.edu 36 2 197975054 197975054 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012433 exon15 c.C2123T p.A708V . . . BMPR2 659 broad.mit.edu 36 2 203093163 203093163 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001204 exon7 c.C961T p.R321X . . . CYP20A1 57404 broad.mit.edu 36 2 203869742 203869742 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177538 exon13 c.A1255G p.T419A . . . PLEKHM3 389072 broad.mit.edu 36 2 208519426 208519426 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080475 exon4 c.T1602C p.S534S . . . PIKFYVE 200576 broad.mit.edu 36 2 208923769 208923769 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015040 exon37 c.T5464G p.C1822G . . . CPS1 1373 broad.mit.edu 36 2 211231599 211231599 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122634 exon21 c.C2345A p.A782D . . . BARD1 580 broad.mit.edu 36 2 215354296 215354296 + Missense_Mutation SNP C G G rs67232351 unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000465 exon4 c.G547C p.V183L . . . ATIC 471 broad.mit.edu 36 2 215922534 215922534 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004044 exon16 c.G1690A p.G564S . . . FN1 2335 broad.mit.edu 36 2 215957091 215957091 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_212476 exon29 c.C4518T p.S1506S . . . TNS1 7145 broad.mit.edu 36 2 218386756 218386756 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022648 exon26 c.G4446A p.P1482P . . . PLCD4 84812 broad.mit.edu 36 2 219206724 219206724 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032726 exon11 c.G1602T p.E534D . . . ANKZF1 55139 broad.mit.edu 36 2 219808719 219808719 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042410 exon12 c.C1849T p.R617W . . . CCDC140 151278 broad.mit.edu 36 2 222876972 222876972 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153038 exon2 c.G107A p.R36H . . . DOCK10 55619 broad.mit.edu 36 2 225429908 225429908 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014689 exon15 c.G1721T p.R574I . . . DOCK10 55619 broad.mit.edu 36 2 225447645 225447645 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014689 exon9 c.A999G p.L333L . . . KIAA1486 57624 broad.mit.edu 36 2 226086611 226086611 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020864 exon3 c.A502G p.K168E . . . KIAA1486 57624 broad.mit.edu 36 2 226155224 226155224 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020864 exon4 c.G847A p.A283T . . . RHBDD1 84236 broad.mit.edu 36 2 227487277 227487277 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167608 exon8 c.C822T p.L274L . . . TRIP12 9320 broad.mit.edu 36 2 230366057 230366057 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004238 exon26 c.T3792C p.H1264H . . . SP110 3431 broad.mit.edu 36 2 230785844 230785844 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004510 exon4 c.G459A p.A153A . . . B3GNT7 93010 broad.mit.edu 36 2 231971234 231971234 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145236 exon2 c.C560T p.T187M . . . GIGYF2 26058 broad.mit.edu 36 2 233389976 233389976 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103148 exon19 c.G2342A p.R781Q . . . GIGYF2 26058 broad.mit.edu 36 2 233429799 233429799 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103148 exon28 c.G3867A p.T1289T . . . C2orf44 80304 broad.mit.edu 36 2 24114872 24114872 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025203 exon2 c.A997G p.K333E . . . AQP12A 375318 broad.mit.edu 36 2 241280071 241280071 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198998 exon1 c.G68A p.R23Q . . . OTOF 9381 broad.mit.edu 36 2 26578788 26578788 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194248 exon7 c.G594T p.A198A . . . TCF23 150921 broad.mit.edu 36 2 27226671 27226671 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175769 exon2 c.C399T p.G133G . . . SLC5A6 8884 broad.mit.edu 36 2 27281181 27281181 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021095 exon8 c.C857T p.T286M . . . CAD 790 broad.mit.edu 36 2 27308466 27308466 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004341 exon17 c.C2515T p.R839X . . . GTF3C2 2976 broad.mit.edu 36 2 27404534 27404534 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035521 exon17 c.G2283A p.P761P . . . SNX17 9784 broad.mit.edu 36 2 27449013 27449013 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014748 exon3 c.C158T p.A53V . . . FOSL2 2355 broad.mit.edu 36 2 28488301 28488301 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005253 exon4 c.G463T p.E155X . . . EHD3 30845 broad.mit.edu 36 2 31320753 31320753 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014600 exon2 c.G337A p.A113T . . . DPY30 84661 broad.mit.edu 36 2 32117875 32117875 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032574 exon3 c.T61C p.Y21H . . . BIRC6 57448 broad.mit.edu 36 2 32593698 32593698 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016252 exon55 c.C10706A p.P3569H . . . TTC27 55622 broad.mit.edu 36 2 32781475 32781475 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193509 exon10 c.C1067T p.A356V . . . FAM98A 25940 broad.mit.edu 36 2 33663920 33663920 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015475 exon8 c.C984T p.G328G . . . DHX57 90957 broad.mit.edu 36 2 38944022 38944022 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198963 exon3 c.C368T p.A123V . . . SLC8A1 6546 broad.mit.edu 36 2 40196016 40196016 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001112800 exon9 c.G2788T p.G930C . . . OXER1 165140 broad.mit.edu 36 2 42843781 42843781 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148962 exon1 c.G1043A p.S348N . . . C2orf34 79823 broad.mit.edu 36 2 44847097 44847097 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024766 exon10 c.C787T p.R263C . . . TTC7A 57217 broad.mit.edu 36 2 47086687 47086687 + De_novo_Start_InFrame SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020458 exon9 c.C1188T p.Y396Y . . . STON1-GTF2A1L 286749 broad.mit.edu 36 2 48661301 48661301 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198594 exon1 c.T25C p.W9R . . . STON1-GTF2A1L 286749 broad.mit.edu 36 2 48701502 48701502 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006872 exon2 c.C30A p.L10L . . . ASB3 51130 broad.mit.edu 36 2 53751240 53751240 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016115 exon10 c.G1461A p.Q487Q . . . PSME4 23198 broad.mit.edu 36 2 53968624 53968624 + Silent SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014614 exon39 c.T4395G p.L1465L . . . EFEMP1 2202 broad.mit.edu 36 2 55955657 55955657 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039348 exon9 c.G928A p.V310I . . . VRK2 7444 broad.mit.edu 36 2 58166996 58166996 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130483 exon5 c.G275A p.R92H . . . BCL11A 53335 broad.mit.edu 36 2 60542942 60542942 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138559 exon4 c.C609T p.H203H . . . SPRED2 200734 broad.mit.edu 36 2 65394294 65394294 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181784 exon6 c.G1102A p.D368N . . . DYSF 8291 broad.mit.edu 36 2 71619800 71619800 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130982 exon17 c.G1499A p.R500H . . . DYSF 8291 broad.mit.edu 36 2 71691976 71691976 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130982 exon38 c.G4093A p.A1365T . . . CCT7 10574 broad.mit.edu 36 2 73325243 73325243 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166285 exon7 c.G378A p.Q126Q . . . EGR4 1961 broad.mit.edu 36 2 73372339 73372339 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001965 exon2 c.G1524A p.T508T . . . ACTG2 72 broad.mit.edu 36 2 73981972 73981972 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001615 exon2 c.T26C p.L9P . . . LRRTM4 80059 broad.mit.edu 36 2 77599778 77599778 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024993 exon3 c.G725A p.R242H . . . CTNNA2 1496 broad.mit.edu 36 2 79954944 79954944 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004389 exon6 c.G820A p.G274S . . . MRPS5 64969 broad.mit.edu 36 2 95134151 95134151 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031902 exon7 c.C724T p.R242C . . . ZNF514 84874 broad.mit.edu 36 2 95179054 95179054 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032788 exon5 c.A903G p.S301S . . . TMEM127 55654 broad.mit.edu 36 2 96284314 96284314 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017849 exon3 c.C393T p.F131F . . . NCAPH 23397 broad.mit.edu 36 2 96373607 96373607 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015341 exon6 c.T633C p.A211A . . . TMEM131 23505 broad.mit.edu 36 2 97743516 97743516 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015348 exon38 c.G5080A p.A1694T . . . NCKAP5 344148 broad.mit.edu 36 2 133259501 133259501 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207363 exon14 c.1353delC p.P451fs . . . TTN 7273 broad.mit.edu 36 2 179194307 179194307 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon74 c.18188delA p.N6063fs . . . TTN 7273 broad.mit.edu 36 2 179245016 179245016 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon150 c.31251delA p.K10417fs . . . OSGEPL1 64172 broad.mit.edu 36 2 190334576 190334576 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022353 exon2 c.36delT p.F12fs . . . DNAH7 56171 broad.mit.edu 36 2 196430566 196430566 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018897 exon44 c.8194delA p.I2732fs . . . PGAP1 80055 broad.mit.edu 36 2 197465345 197465346 + Frame_Shift_Del DEL TT - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 TT TT TT - TT TT Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024989 exon9 c.1058_1059del p.353_353del . . . MATN3 4148 broad.mit.edu 36 2 20063692 20063692 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002381 exon5 c.1159delA p.T387fs . . . ABCB6 10058 broad.mit.edu 36 2 219789347 219789347 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005689 exon4 c.953delG p.G318fs . . . PSMD1 5707 broad.mit.edu 36 2 231639924 231639924 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002807 exon5 c.365delA p.E122fs . . . RBM44 375316 broad.mit.edu 36 2 238390716 238390716 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080504 exon3 c.418delA p.K140fs . . . POMC 5443 broad.mit.edu 36 2 25237491 25237491 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001035256 exon4 c.767delA p.N256fs . . . DNMT3A 1788 broad.mit.edu 36 2 25358935 25358935 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175629 exon4 c.327delG p.G109fs . . . LRPPRC 10128 broad.mit.edu 36 2 44044287 44044288 + Frame_Shift_Del DEL TA - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 TA TA TA - TA TA Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133259 exon12 c.1431_1432del p.477_478del . . . EHBP1 23301 broad.mit.edu 36 2 63059856 63059857 + Frame_Shift_Del DEL GA - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 GA GA GA - GA GA Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142614 exon14 c.2490_2491del p.830_831del . . . LBX2 85474 broad.mit.edu 36 2 74583448 74583448 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009812 exon1 c.47delG p.G16fs . . . CNGA3 1261 broad.mit.edu 36 2 98379445 98379445 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001298 exon8 c.1380delC p.L460fs . . . GPR128 84873 broad.mit.edu 36 3 101848231 101848231 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032787 exon10 c.C1239T p.N413N . . . IMPG2 50939 broad.mit.edu 36 3 102455250 102455250 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016247 exon11 c.G1219A p.A407T . . . ALCAM 214 broad.mit.edu 36 3 106748982 106748982 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001627 exon11 c.A1299G p.I433M . . . QTRTD1 79691 broad.mit.edu 36 3 115278433 115278433 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024638 exon7 c.C700T p.R234C . . . ARHGAP31 57514 broad.mit.edu 36 3 120603934 120603934 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020754 exon10 c.G1645T p.A549S . . . POLQ 10721 broad.mit.edu 36 3 122683193 122683193 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199420 exon19 c.C6127T p.R2043X . . . POLQ 10721 broad.mit.edu 36 3 122690701 122690701 + Missense_Mutation SNP C A A rs3218640 byCluster;byFrequency;byHapMap TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199420 exon16 c.G3767T p.G1256V . . . PARP14 54625 broad.mit.edu 36 3 123915877 123915877 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017554 exon12 c.G3911A p.G1304E . . . ADCY5 111 broad.mit.edu 36 3 124491329 124491329 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183357 exon19 c.T3490C p.Y1164H . . . ITGB5 3693 broad.mit.edu 36 3 125975415 125975415 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002213 exon11 c.C1728T p.C576C . . . ZXDC 79364 broad.mit.edu 36 3 127667717 127667717 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025112 exon5 c.A1412T p.H471L . . . CAND2 23066 broad.mit.edu 36 3 12833079 12833079 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162499 exon10 c.C1648T p.R550W . . . RHO 6010 broad.mit.edu 36 3 130734147 130734147 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000539 exon4 c.G778A p.A260T . . . BFSP2 8419 broad.mit.edu 36 3 134668438 134668438 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003571 exon5 c.A968G p.N323S . . . TF 7018 broad.mit.edu 36 3 134977045 134977045 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001063 exon15 c.C1766A p.P589H . . . CEP63 80254 broad.mit.edu 36 3 135708765 135708765 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042383 exon3 c.C169T p.R57C . . . MSL2 55167 broad.mit.edu 36 3 137353097 137353097 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018133 exon2 c.C1316A p.P439H . . . ARMC8 25852 broad.mit.edu 36 3 139446734 139446734 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213654 exon13 c.C1111T p.R371C . . . ACPL2 92370 broad.mit.edu 36 3 142494067 142494067 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152282 exon8 c.A773G p.Q258R . . . GFM1 85476 broad.mit.edu 36 3 159891884 159891884 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024996 exon18 c.C2190T p.D730D . . . SAMD7 344658 broad.mit.edu 36 3 171127491 171127491 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182610 exon6 c.C747T p.A249A . . . PHC3 80012 broad.mit.edu 36 3 171297755 171297755 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024947 exon15 c.C2945T p.A982V . . . TBC1D5 9779 broad.mit.edu 36 3 17230832 17230832 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134380 exon18 c.C1623T p.S541S . . . GHSR 2693 broad.mit.edu 36 3 173648817 173648817 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198407 exon1 c.C81T p.N27N . . . ZNF639 51193 broad.mit.edu 36 3 180533853 180533853 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016331 exon7 c.A407G p.E136G . . . PEX5L 51555 broad.mit.edu 36 3 181008293 181008293 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016559 exon14 c.C1539T p.R513R . . . SOX2 6657 broad.mit.edu 36 3 182913070 182913070 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003106 exon1 c.C228T p.G76G . . . KLHL6 89857 broad.mit.edu 36 3 184708565 184708565 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130446 exon3 c.G885T p.R295S . . . AP2M1 1173 broad.mit.edu 36 3 185382297 185382297 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025205 exon7 c.G821A p.R274K . . . ALG3 10195 broad.mit.edu 36 3 185445752 185445752 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006941 exon4 c.C389T p.A130V . . . EPHB3 2049 broad.mit.edu 36 3 185781636 185781636 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004443 exon14 c.C2721T p.S907S . . . TRA2B 6434 broad.mit.edu 36 3 187126086 187126086 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004593 exon3 c.C193T p.R65X . . . LPP 4026 broad.mit.edu 36 3 190074838 190074838 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167671 exon11 c.C1716T p.C572C . . . TP63 8626 broad.mit.edu 36 3 191069199 191069199 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114980 exon6 c.C847T p.P283S . . . HES1 3280 broad.mit.edu 36 3 195338202 195338202 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005524 exon4 c.A329G p.Y110C . . . GP5 2814 broad.mit.edu 36 3 195599393 195599393 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004488 exon2 c.G908A p.R303H . . . LRRC33 375387 broad.mit.edu 36 3 197871457 197871457 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198565 exon3 c.T546C p.R182R . . . LRRC33 375387 broad.mit.edu 36 3 197872497 197872497 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198565 exon3 c.C1586T p.A529V . . . TRIM71 131405 broad.mit.edu 36 3 32908003 32908003 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039111 exon4 c.A2303G p.N768S . . . CLASP2 23122 broad.mit.edu 36 3 33592758 33592758 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015097 exon24 c.G2361A p.G787G . . . CLASP2 23122 broad.mit.edu 36 3 33601323 33601323 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015097 exon22 c.C2162T p.A721V . . . DCLK3 85443 broad.mit.edu 36 3 36755114 36755114 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033403 exon2 c.C41T p.A14V . . . EPM2AIP1 9852 broad.mit.edu 36 3 37009442 37009442 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014805 exon1 c.G131A p.R44H . . . GOLGA4 2803 broad.mit.edu 36 3 37267892 37267892 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172713 exon2 c.G75A p.A25A . . . SCN11A 11280 broad.mit.edu 36 3 38863843 38863843 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014139 exon26 c.C4722T p.C1574C . . . SCN11A 11280 broad.mit.edu 36 3 38920506 38920506 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014139 exon12 c.G1696A p.V566I . . . TTC21A 199223 broad.mit.edu 36 3 39145631 39145631 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105513 exon14 c.G1838A p.R613H . . . TTC21A 199223 broad.mit.edu 36 3 39153790 39153790 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105513 exon24 c.C3235T p.R1079W . . . XIRP1 165904 broad.mit.edu 36 3 39203108 39203108 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194293 exon2 c.C2833T p.R945W . . . CHL1 10752 broad.mit.edu 36 3 407785 407785 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006614 exon22 c.A2734G p.N912D . . . TRAK1 22906 broad.mit.edu 36 3 42107966 42107966 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042646 exon1 c.A1G p.M1V . . . TRAK1 22906 broad.mit.edu 36 3 42239861 42239861 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042646 exon16 c.C2490T p.S830S . . . ZNF662 389114 broad.mit.edu 36 3 42925360 42925360 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134656 exon3 c.C286A p.P96T . . . CSPG5 10675 broad.mit.edu 36 3 47593509 47593509 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006574 exon2 c.C1011T p.I337I . . . ATRIP 84126 broad.mit.edu 36 3 48476978 48476978 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130384 exon8 c.G1521A p.G507G . . . COL7A1 1294 broad.mit.edu 36 3 48579347 48579347 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000094 exon110 c.G8223T p.Q2741H . . . QARS 5859 broad.mit.edu 36 3 49115838 49115838 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005051 exon5 c.C460T p.R154W . . . CAMKV 79012 broad.mit.edu 36 3 49872621 49872621 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024046 exon10 c.G929T p.R310M . . . MON1A 84315 broad.mit.edu 36 3 49923236 49923236 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032355 exon4 c.G990A p.A330A . . . SEMA3F 6405 broad.mit.edu 36 3 50195877 50195877 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004186 exon12 c.C1109T p.A370V . . . DOCK3 1795 broad.mit.edu 36 3 51327590 51327590 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004947 exon32 c.C3352T p.L1118F . . . RBM15B 29890 broad.mit.edu 36 3 51405491 51405491 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013286 exon1 c.C1621A p.R541R . . . IQCF3 401067 broad.mit.edu 36 3 51839627 51839627 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085479 exon5 c.C235T p.R79W . . . RRP9 9136 broad.mit.edu 36 3 51945326 51945326 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004704 exon8 c.G722A p.R241Q . . . STAB1 23166 broad.mit.edu 36 3 52511705 52511705 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015136 exon6 c.G505A p.G169R . . . ITIH1 3697 broad.mit.edu 36 3 52793524 52793524 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166434 exon9 c.G972T p.Q324H . . . DCP1A 55802 broad.mit.edu 36 3 53301349 53301349 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018403 exon7 c.C1173T p.S391S . . . IL17RD 54756 broad.mit.edu 36 3 57106735 57106735 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017563 exon12 c.T2036C p.M679T . . . APPL1 26060 broad.mit.edu 36 3 57276857 57276857 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012096 exon20 c.A1890G p.E630E . . . ASB14 142686 broad.mit.edu 36 3 57287543 57287543 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130387 exon1 c.T478C p.Y160H . . . KCTD6 200845 broad.mit.edu 36 3 58462369 58462369 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153331 exon2 c.C684A p.F228L . . . CADPS 8618 broad.mit.edu 36 3 62611580 62611580 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183393 exon5 c.G1185A p.V395V . . . C3orf64 285203 broad.mit.edu 36 3 69141605 69141605 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173654 exon4 c.G83T p.S28I . . . LMOD3 56203 broad.mit.edu 36 3 69251728 69251728 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198271 exon2 c.C468T p.D156D . . . PDZRN3 23024 broad.mit.edu 36 3 73515379 73515379 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015009 exon10 c.G3028A p.D1010N . . . CNTN3 5067 broad.mit.edu 36 3 74417146 74417146 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020872 exon19 c.C2704T p.P902S . . . ARL13B 200894 broad.mit.edu 36 3 95181973 95181973 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174150 exon1 c.G16A p.A6T . . . CPNE9 151835 broad.mit.edu 36 3 9743814 9743814 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153635 exon19 c.G1420T p.G474C . . . OR5H14 403273 broad.mit.edu 36 3 99351004 99351004 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005514 exon1 c.C85A p.L29M . . . ZBTB20 26137 broad.mit.edu 36 3 115540693 115540693 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164343 exon12 c.1856delC p.P619fs . . . B3GALNT1 8706 broad.mit.edu 36 3 162286573 162286573 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033168 exon4 c.664delA p.T222fs . . . SLITRK3 22865 broad.mit.edu 36 3 166390028 166390028 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014926 exon2 c.1285delT p.W429fs . . . MECOM 2122 broad.mit.edu 36 3 170315951 170315951 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105077 exon8 c.2034delA p.K678fs . . . ATP11B 23200 broad.mit.edu 36 3 184085368 184085368 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014616 exon22 c.2643delT p.Y881fs . . . YEATS2 55689 broad.mit.edu 36 3 184991391 184991391 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018023 exon21 c.3026delC p.T1009fs . . . NBEAL2 23218 broad.mit.edu 36 3 47016626 47016626 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015175 exon27 c.4033delT p.F1345fs . . . COL7A1 1294 broad.mit.edu 36 3 48587875 48587875 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000094 exon73 c.6081delC p.P2027fs . . . MAGI1 9223 broad.mit.edu 36 3 65317822 65317822 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015520 exon25 c.3833delC p.P1278fs . . . PDZRN3 23024 broad.mit.edu 36 3 73515860 73515860 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015009 exon10 c.2547delC p.P849fs . . . STX19 415117 broad.mit.edu 36 3 95216506 95216506 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001850 exon2 c.298delA p.I100fs . . . CRYBG3 131544 broad.mit.edu 36 3 99097606 99097606 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . GPRIN3 285513 broad.mit.edu 36 4 90388290 90388291 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198281 exon2 c.1995_1996insA p.K665fs . . . MANBA 4126 broad.mit.edu 36 4 103830808 103830808 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005908 exon6 c.T842C p.I281T . . . TACR3 6870 broad.mit.edu 36 4 104730401 104730401 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001059 exon5 c.G1285A p.A429T . . . INTS12 57117 broad.mit.edu 36 4 106827298 106827298 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142471 exon6 c.G804T p.K268N . . . DKK2 27123 broad.mit.edu 36 4 108064652 108064652 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014421 exon4 c.C688T p.R230C . . . SEC24B 10427 broad.mit.edu 36 4 110650712 110650712 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006323 exon8 c.T1772C p.L591P . . . CFI 3426 broad.mit.edu 36 4 110881510 110881510 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000204 exon13 c.G1740A p.Q580Q . . . ANK2 287 broad.mit.edu 36 4 114495499 114495499 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001148 exon38 c.A6276G p.I2092M . . . C4orf31 79625 broad.mit.edu 36 4 122176932 122176932 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024574 exon4 c.A1644G p.I548M . . . KIAA1109 84162 broad.mit.edu 36 4 123347819 123347819 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015312 exon14 c.G1603A p.A535T . . . FAT4 79633 broad.mit.edu 36 4 126458027 126458027 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon1 c.C1011T p.A337A . . . FAT4 79633 broad.mit.edu 36 4 126591753 126591753 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon9 c.T10132G p.F3378V . . . FAT4 79633 broad.mit.edu 36 4 126592282 126592282 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon9 c.C10661A p.A3554D . . . FAT4 79633 broad.mit.edu 36 4 126631253 126631254 + Missense_Mutation DNP CT TC TC novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 CT CT Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024582 exon17 c.13826_13827TC . . . . MFSD8 256471 broad.mit.edu 36 4 129073590 129073590 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152778 exon9 c.C863T p.T288I . . . SCLT1 132320 broad.mit.edu 36 4 130025102 130025102 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144643 exon21 c.A2047C p.M683L . . . PCDH18 54510 broad.mit.edu 36 4 138662173 138662173 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019035 exon4 c.G2868A p.T956T . . . ELF2 1998 broad.mit.edu 36 4 140201228 140201228 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006874 exon6 c.T677C p.V226A . . . MAML3 55534 broad.mit.edu 36 4 141031462 141031462 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018717 exon2 c.G578A p.R193Q . . . USP38 84640 broad.mit.edu 36 4 144354217 144354217 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032557 exon9 c.G1638A p.Q546Q . . . USP38 84640 broad.mit.edu 36 4 144354490 144354490 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032557 exon9 c.A1911G p.S637S . . . POU4F2 5458 broad.mit.edu 36 4 147781172 147781172 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004575 exon2 c.G992A p.R331H . . . PET112L 5188 broad.mit.edu 36 4 152820441 152820441 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004564 exon11 c.A1384C p.T462P . . . PET112L 5188 broad.mit.edu 36 4 152829357 152829357 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004564 exon10 c.C1206T p.V402V . . . FGA 2243 broad.mit.edu 36 4 155727499 155727499 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021871 exon5 c.C532T p.R178X . . . FAM198B 51313 broad.mit.edu 36 4 159311281 159311281 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128424 exon2 c.G697A p.A233T . . . FNIP2 57600 broad.mit.edu 36 4 160008846 160008846 + Silent SNP C G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020840 exon13 c.C1608G p.T536T . . . FSTL5 56884 broad.mit.edu 36 4 163061062 163061062 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020116 exon4 c.C353A p.A118D . . . ANP32C 23520 broad.mit.edu 36 4 165337774 165337774 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012403 exon1 c.G540T p.Q180H . . . CLCN3 1182 broad.mit.edu 36 4 170877686 170877686 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001829 exon13 c.C2420T p.T807M . . . NCAPG 64151 broad.mit.edu 36 4 17445039 17445039 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022346 exon14 c.T1904C p.V635A . . . ODZ3 55714 broad.mit.edu 36 4 183950557 183950557 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080477 exon25 c.A5738G p.N1913S . . . MLF1IP 79682 broad.mit.edu 36 4 185858999 185858999 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024629 exon11 c.C955T p.R319C . . . KIAA1430 57587 broad.mit.edu 36 4 186322251 186322251 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020827 exon4 c.G1397A p.R466H . . . KIAA1430 57587 broad.mit.edu 36 4 186348570 186348570 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020827 exon2 c.T775C p.S259P . . . GBA3 57733 broad.mit.edu 36 4 22429485 22429485 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128432 exon3 c.G330A p.W110X . . . GBA3 57733 broad.mit.edu 36 4 22429629 22429629 + Silent SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128432 exon3 c.T474G p.L158L . . . NOP14 8602 broad.mit.edu 36 4 2919104 2919104 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003703 exon10 c.C1446T p.G482G . . . RGS12 6002 broad.mit.edu 36 4 3400210 3400210 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002926 exon16 c.A3539G p.Q1180R . . . TBC1D1 23216 broad.mit.edu 36 4 37793950 37793950 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015173 exon16 c.C2782T p.P928S . . . TLR1 7096 broad.mit.edu 36 4 38475777 38475777 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003263 exon4 c.T1071C p.N357N . . . LIMCH1 22998 broad.mit.edu 36 4 41389149 41389149 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001112720 exon19 c.C2638T p.R880X . . . SLC30A9 10463 broad.mit.edu 36 4 41720130 41720130 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006345 exon6 c.T582C p.R194R . . . EVC2 132884 broad.mit.edu 36 4 5637306 5637306 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166136 exon17 c.C2762T p.A921V . . . EPHA5 2044 broad.mit.edu 36 4 66150507 66150507 + Silent SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004439 exon3 c.C357A p.S119S . . . TMPRSS11A 339967 broad.mit.edu 36 4 68492824 68492824 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182606 exon3 c.A260G p.Q87R . . . SULT1B1 27284 broad.mit.edu 36 4 70650093 70650093 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014465 exon4 c.C310T p.R104W . . . ENAM 10117 broad.mit.edu 36 4 71727125 71727125 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031889 exon9 c.G1118A p.R373H . . . ADAMTS3 9508 broad.mit.edu 36 4 73395680 73395680 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014243 exon14 c.G2004A p.T668T . . . SCARB2 950 broad.mit.edu 36 4 77303469 77303469 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005506 exon11 c.C1331T p.A444V . . . SHROOM3 57619 broad.mit.edu 36 4 77879549 77879549 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020859 exon5 c.G1199A p.R400Q . . . FRAS1 80144 broad.mit.edu 36 4 79674720 79674720 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025074 exon71 c.G11019T p.K3673N . . . FRAS1 80144 broad.mit.edu 36 4 79677319 79677319 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025074 exon72 c.G11239T p.G3747W . . . BMP2K 55589 broad.mit.edu 36 4 80051929 80051929 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198892 exon16 c.C3204A p.P1068P . . . NUDT9 53343 broad.mit.edu 36 4 88575178 88575178 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024047 exon2 c.G129A p.W43X . . . DSPP 1834 broad.mit.edu 36 4 88752803 88752803 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014208 exon4 c.A441G p.G147G . . . FAM190A 401145 broad.mit.edu 36 4 91768226 91768226 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145065 exon6 c.C1752T p.D584D . . . IDUA 3425 broad.mit.edu 36 4 988096 988096 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000203 exon14 c.G1877A p.W626X . . . LARP7 51574 broad.mit.edu 36 4 113790203 113790203 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016648 exon9 c.1206delA p.L402fs . . . FBXW7 55294 broad.mit.edu 36 4 153468811 153468811 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018315 exon8 c.1177delA p.R393fs . . . C4orf43 55319 broad.mit.edu 36 4 164647735 164647735 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018352 exon2 c.104delA p.E35fs . . . KLHL5 51088 broad.mit.edu 36 4 38754080 38754080 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015990 exon2 c.622delA p.K208fs . . . PDGFRA 5156 broad.mit.edu 36 4 54846306 54846306 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006206 exon17 c.2335delA p.K779fs . . . KIAA1211 57482 broad.mit.edu 36 4 56876389 56876389 + Frame_Shift_Del DEL G - - rs7672073 byCluster;byFrequency;byHapMap;by1000genomes TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NM_020722 exon8 c.1964delG p.R655fs . . . GAK 2580 broad.mit.edu 36 4 850923 850923 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005255 exon21 c.2693delC p.P898fs . . . ABCG2 9429 broad.mit.edu 36 4 89232419 89232419 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004827 exon16 c.1959delA p.K653fs . . . CDH10 1008 broad.mit.edu 36 5 24573449 24573450 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006727 exon3 c.323_324insA p.T108fs . . . SLCO4C1 353189 broad.mit.edu 36 5 101659645 101659645 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_180991 exon1 c.A221C p.K74T . . . SLCO6A1 133482 broad.mit.edu 36 5 101763196 101763196 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173488 exon10 c.T1776C p.S592S . . . GIN1 54826 broad.mit.edu 36 5 102451623 102451623 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017676 exon8 c.C1447T p.R483C . . . GIN1 54826 broad.mit.edu 36 5 102460920 102460920 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017676 exon6 c.C1005T p.G335G . . . ROPN1L 83853 broad.mit.edu 36 5 10514310 10514310 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031916 exon4 c.G432A p.A144A . . . DCP2 167227 broad.mit.edu 36 5 112364802 112364802 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152624 exon5 c.A555C p.K185N . . . AQPEP 206338 broad.mit.edu 36 5 115357343 115357343 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173800 exon6 c.G1267T p.G423X . . . SRFBP1 153443 broad.mit.edu 36 5 121382890 121382890 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152546 exon5 c.C307T p.L103L . . . ZNF474 133923 broad.mit.edu 36 5 121516282 121516282 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207317 exon2 c.C698A p.T233N . . . IL3 3562 broad.mit.edu 36 5 131426146 131426146 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000588 exon4 c.C323T p.T108M . . . GDF9 2661 broad.mit.edu 36 5 132227908 132227908 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005260 exon1 c.C217T p.R73X . . . FSTL4 23105 broad.mit.edu 36 5 132563124 132563124 + Silent SNP G A A rs61740558 unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015082 exon16 c.C2091T p.D697D . . . KDM3B 51780 broad.mit.edu 36 5 137741410 137741410 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016604 exon4 c.C577T p.R193X . . . ETF1 2107 broad.mit.edu 36 5 137881195 137881195 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004730 exon4 c.C356T p.P119L . . . PSD2 84249 broad.mit.edu 36 5 139174076 139174076 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032289 exon4 c.G959A p.R320H . . . IK 3550 broad.mit.edu 36 5 140019084 140019084 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006083 exon13 c.C1177T p.P393S . . . PCDHA3 56145 broad.mit.edu 36 5 140162870 140162870 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031497 exon1 c.G1904A p.R635H . . . PCDHA8 56140 broad.mit.edu 36 5 140202198 140202198 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031856 exon1 c.G1108A p.A370T . . . PCDHAC1 56135 broad.mit.edu 36 5 140287114 140287114 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031882 exon1 c.C453T p.D151D . . . PCDHB2 56133 broad.mit.edu 36 5 140454978 140454978 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018936 exon1 c.A420G p.I140M . . . PCDHB2 56133 broad.mit.edu 36 5 140456698 140456698 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018936 exon1 c.C2140A p.R714R . . . PCDHB8 56128 broad.mit.edu 36 5 140538881 140538881 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019120 exon1 c.C1082T p.A361V . . . PCDHB11 56125 broad.mit.edu 36 5 140561609 140561609 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018931 exon1 c.C2078T p.A693V . . . PCDHB12 56124 broad.mit.edu 36 5 140570354 140570354 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018932 exon1 c.C1691T p.P564L . . . PCDHB14 56122 broad.mit.edu 36 5 140585310 140585310 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018934 exon1 c.C2049A p.A683A . . . PCDHB15 56121 broad.mit.edu 36 5 140606861 140606861 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018935 exon1 c.G1531A p.G511S . . . PCDHGA3 56112 broad.mit.edu 36 5 140705522 140705522 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018916 exon1 c.C1738T p.R580C . . . PCDHGB1 56104 broad.mit.edu 36 5 140711542 140711542 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018922 exon1 c.T1531C p.F511L . . . PCDHGA6 56109 broad.mit.edu 36 5 140736061 140736061 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032086 exon1 c.G2227A p.V743M . . . PCDHGA8 9708 broad.mit.edu 36 5 140754240 140754240 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032088 exon1 c.C1676T p.A559V . . . PCDHGA9 56107 broad.mit.edu 36 5 140764384 140764384 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018921 exon1 c.G1681T p.E561X . . . PCDHGB6 56100 broad.mit.edu 36 5 140769863 140769863 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018926 exon1 c.C1910T p.A637V . . . PCDHGA12 26025 broad.mit.edu 36 5 140792254 140792254 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032094 exon1 c.G1744A p.A582T . . . PCDH1 5097 broad.mit.edu 36 5 141229114 141229114 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032420 exon2 c.G107A p.R36Q . . . PCDH12 51294 broad.mit.edu 36 5 141314957 141314957 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016580 exon1 c.G2644T p.V882F . . . NDFIP1 80762 broad.mit.edu 36 5 141491604 141491604 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030571 exon2 c.T111C p.D37D . . . SPINK5 11005 broad.mit.edu 36 5 147493611 147493611 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127698 exon33 c.C3244T p.P1082S . . . GPX3 2878 broad.mit.edu 36 5 150387862 150387862 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002084 exon5 c.C659T p.A220V . . . SLC36A2 153201 broad.mit.edu 36 5 150707077 150707077 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181776 exon1 c.A138G p.A46A . . . FAT2 2196 broad.mit.edu 36 5 150894239 150894239 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001447 exon12 c.C9351T p.H3117H . . . FAT2 2196 broad.mit.edu 36 5 150903974 150903974 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001447 exon9 c.C6907T p.R2303W . . . CNOT8 9337 broad.mit.edu 36 5 154230455 154230455 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004779 exon4 c.A353T p.N118I . . . SGCD 6444 broad.mit.edu 36 5 155704138 155704138 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172244 exon3 c.T65C p.V22A . . . FAM71B 153745 broad.mit.edu 36 5 156522392 156522392 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130899 exon2 c.G1462A p.V488I . . . FBXL7 23194 broad.mit.edu 36 5 15669144 15669144 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012304 exon2 c.G90A p.T30T . . . ADRA1B 147 broad.mit.edu 36 5 159331584 159331584 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000679 exon2 c.G1070A p.R357H . . . FABP6 2172 broad.mit.edu 36 5 159573346 159573346 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130958 exon3 c.G77A p.C26Y . . . MYO10 4651 broad.mit.edu 36 5 16754082 16754082 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012334 exon25 c.C3422T p.A1141V . . . MYO10 4651 broad.mit.edu 36 5 16754628 16754628 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012334 exon25 c.G2876A p.R959Q . . . RARS 5917 broad.mit.edu 36 5 167877408 167877408 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002887 exon14 c.C1636T p.R546C . . . SLIT3 6586 broad.mit.edu 36 5 168107946 168107946 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003062 exon20 c.C2209T p.R737X . . . DOCK2 1794 broad.mit.edu 36 5 169400709 169400709 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004946 exon37 c.C3738T p.L1246L . . . STK10 6793 broad.mit.edu 36 5 171456126 171456126 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005990 exon8 c.A914C p.E305A . . . SH3PXD2B 285590 broad.mit.edu 36 5 171699093 171699093 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017995 exon13 c.C1621T p.R541W . . . C5orf41 153222 broad.mit.edu 36 5 172450332 172450332 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168393 exon4 c.G544A p.A182T . . . STC2 8614 broad.mit.edu 36 5 172687725 172687725 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003714 exon1 c.C78T p.D26D . . . SLC34A1 6569 broad.mit.edu 36 5 176746061 176746061 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167579 exon5 c.C420T p.N140N . . . TMED9 54732 broad.mit.edu 36 5 176953809 176953809 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017510 exon4 c.G475A p.D159N . . . RMND5B 64777 broad.mit.edu 36 5 177507626 177507626 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022762 exon11 c.G1169A p.R390H . . . GRM6 2916 broad.mit.edu 36 5 178346337 178346337 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000843 exon8 c.C1524T p.G508G . . . MAML1 9794 broad.mit.edu 36 5 179130789 179130789 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014757 exon4 c.A2007G p.P669P . . . CNOT6 57472 broad.mit.edu 36 5 179925471 179925471 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015455 exon7 c.C605T p.A202V . . . PRDM9 56979 broad.mit.edu 36 5 23562713 23562713 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020227 exon11 c.C1759T p.R587W . . . SDHA 6389 broad.mit.edu 36 5 288329 288329 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004168 exon9 c.C1135T p.R379C . . . DROSHA 29102 broad.mit.edu 36 5 31562295 31562295 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013235 exon4 c.T502C p.Y168H . . . C5orf22 55322 broad.mit.edu 36 5 31571669 31571669 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018356 exon3 c.A289G p.I97V . . . PDZD2 23037 broad.mit.edu 36 5 32046255 32046255 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178140 exon5 c.G1317A p.S439S . . . ADAMTS12 81792 broad.mit.edu 36 5 33685463 33685463 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030955 exon8 c.G1287A p.P429P . . . ADAMTS12 81792 broad.mit.edu 36 5 33927630 33927630 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030955 exon1 c.C89A p.P30H . . . AMACR 23600 broad.mit.edu 36 5 34033342 34033342 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001167596 exon5 c.G778A p.A260T . . . CAPSL 133690 broad.mit.edu 36 5 35946371 35946371 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144647 exon3 c.C169T p.R57X . . . NIPBL 25836 broad.mit.edu 36 5 37021167 37021167 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015384 exon10 c.C2128T p.R710W . . . LIFR 3977 broad.mit.edu 36 5 38532296 38532296 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127671 exon13 c.A1830G p.K610K . . . PRKAA1 5562 broad.mit.edu 36 5 40807587 40807587 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006251 exon4 c.G499A p.A167T . . . C6 729 broad.mit.edu 36 5 41235734 41235734 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000065 exon4 c.G338T p.G113V . . . ISL1 3670 broad.mit.edu 36 5 50719092 50719092 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002202 exon3 c.T230A p.I77N . . . ITGA2 3673 broad.mit.edu 36 5 52397484 52397484 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002203 exon15 c.C1863T p.S621S . . . ARL15 54622 broad.mit.edu 36 5 53444834 53444834 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019087 exon4 c.A417G p.I139M . . . SNX18 112574 broad.mit.edu 36 5 53850751 53850751 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145427 exon1 c.C1212T p.G404G . . . KIAA0947 23379 broad.mit.edu 36 5 5519529 5519529 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015325 exon14 c.C5975T p.A1992V . . . IL31RA 133396 broad.mit.edu 36 5 55237800 55237800 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139017 exon9 c.G1179A p.P393P . . . ANKRD55 79722 broad.mit.edu 36 5 55515123 55515123 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024669 exon3 c.T154C p.S52P . . . PDE4D 5144 broad.mit.edu 36 5 58307350 58307350 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001197222 exon9 c.C1232T p.T411M . . . CWC27 10283 broad.mit.edu 36 5 64135859 64135859 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005869 exon10 c.T828C p.D276D . . . PPWD1 23398 broad.mit.edu 36 5 64918911 64918911 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015342 exon11 c.G1873A p.V625I . . . MAST4 375449 broad.mit.edu 36 5 66496713 66496713 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015183 exon28 c.G5383A p.E1795K . . . MAST4 375449 broad.mit.edu 36 5 66498027 66498027 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015183 exon28 c.C6697T p.P2233S . . . CD180 4064 broad.mit.edu 36 5 66514544 66514544 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005582 exon3 c.C1883T p.T628I . . . MAP1B 4131 broad.mit.edu 36 5 71518200 71518200 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005909 exon4 c.C373T p.R125C . . . MAP1B 4131 broad.mit.edu 36 5 71529141 71529141 + Silent SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005909 exon5 c.G4203T p.P1401P . . . MRPS27 23107 broad.mit.edu 36 5 71564085 71564085 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015084 exon7 c.A532G p.T178A . . . PTCD2 79810 broad.mit.edu 36 5 71689823 71689823 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024754 exon10 c.C980T p.A327V . . . TMEM171 134285 broad.mit.edu 36 5 72455131 72455131 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173490 exon2 c.C175T p.L59F . . . ENC1 8507 broad.mit.edu 36 5 73966531 73966531 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003633 exon2 c.C1536T p.N512N . . . COL4A3BP 10087 broad.mit.edu 36 5 74710966 74710966 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130105 exon18 c.C2220T p.Y740Y . . . COL4A3BP 10087 broad.mit.edu 36 5 74757060 74757060 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130105 exon6 c.G861T p.E287D . . . SV2C 22987 broad.mit.edu 36 5 75463612 75463612 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014979 exon2 c.A281G p.Q94R . . . F2RL2 2151 broad.mit.edu 36 5 75949702 75949702 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004101 exon2 c.G586A p.V196I . . . ARSB 411 broad.mit.edu 36 5 78112077 78112077 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000046 exon8 c.C1501T p.R501C . . . BHMT 635 broad.mit.edu 36 5 78451989 78451989 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001713 exon4 c.G346A p.A116T . . . HOMER1 9456 broad.mit.edu 36 5 78733624 78733624 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004272 exon6 c.A538G p.S180G . . . MSH3 4437 broad.mit.edu 36 5 80001840 80001840 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002439 exon4 c.G748A p.V250M . . . RASGRF2 5924 broad.mit.edu 36 5 80292478 80292478 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006909 exon1 c.G165A p.E55E . . . RPS23 6228 broad.mit.edu 36 5 81609334 81609334 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025 exon2 c.G98A p.G33D . . . XRCC4 7518 broad.mit.edu 36 5 82684738 82684738 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022406 exon8 c.A932G p.K311R . . . GPR98 84059 broad.mit.edu 36 5 89959315 89959315 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032119 exon7 c.A1204G p.R402G . . . NR2F1 7025 broad.mit.edu 36 5 92949458 92949458 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005654 exon2 c.C543T p.G181G . . . NR2F1 7025 broad.mit.edu 36 5 92949588 92949588 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005654 exon2 c.C673T p.R225C . . . SLCO6A1 133482 broad.mit.edu 36 5 101776594 101776594 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_173488 exon9 c.1625delA p.K542fs . . . FSTL4 23105 broad.mit.edu 36 5 132562716 132562716 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015082 exon16 c.2499delG p.G833fs . . . WDR70 55100 broad.mit.edu 36 5 37640996 37640996 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018034 exon10 c.991delA p.K331fs . . . MIER3 166968 broad.mit.edu 36 5 56255524 56255524 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152622 exon11 c.1024delA p.R342fs . . . CHD1 1105 broad.mit.edu 36 5 98234309 98234309 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001270 exon28 c.3960delA p.K1320fs . . . RBM24 221662 broad.mit.edu 36 6 17400187 17400188 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143942 exon4 c.569_570insT p.A190fs . . . BVES 11149 broad.mit.edu 36 6 105680081 105680081 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007073 exon4 c.A417G p.P139P . . . AIM1 202 broad.mit.edu 36 6 107099401 107099401 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001624 exon11 c.G3988A p.G1330R . . . TMEM14B 81853 broad.mit.edu 36 6 10864699 10864699 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127711 exon5 c.G205A p.A69T . . . SYCP2L 221711 broad.mit.edu 36 6 11015852 11015852 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040274 exon10 c.T768A p.D256E . . . WASF1 8936 broad.mit.edu 36 6 110533366 110533366 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024934 exon7 c.A650G p.D217G . . . REV3L 5980 broad.mit.edu 36 6 111803606 111803606 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002912 exon13 c.G2645A p.R882H . . . TSPYL4 23270 broad.mit.edu 36 6 116681159 116681159 + Nonsense_Mutation SNP G A A rs61736142 unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021648 exon1 c.C706T p.R236X . . . DSE 29940 broad.mit.edu 36 6 116864652 116864652 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080976 exon6 c.C2328T p.R776R . . . GPRC6A 222545 broad.mit.edu 36 6 117234369 117234369 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148963 exon3 c.A1192G p.M398V . . . ROS1 6098 broad.mit.edu 36 6 117716368 117716368 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002944 exon43 c.T7024C p.Y2342H . . . NUS1 116150 broad.mit.edu 36 6 118121924 118121924 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138459 exon3 c.G579A p.P193P . . . HSF2 3298 broad.mit.edu 36 6 122782979 122782979 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004506 exon7 c.G594A p.R198R . . . TAAR1 134864 broad.mit.edu 36 6 133008688 133008688 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138327 exon1 c.C148T p.H50Y . . . SIRT5 23408 broad.mit.edu 36 6 13705186 13705186 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_012241 exon7 c.T576C p.P192P . . . ECT2L 345930 broad.mit.edu 36 6 139206023 139206023 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077706 exon6 c.T557C p.L186P . . . GPR126 57211 broad.mit.edu 36 6 142782817 142782817 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001032394 exon21 c.C3118T p.R1040C . . . UTRN 7402 broad.mit.edu 36 6 144654689 144654689 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007124 exon1 c.C32A p.P11H . . . LRP11 84918 broad.mit.edu 36 6 150205830 150205830 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032832 exon3 c.G895A p.A299T . . . AKAP12 9590 broad.mit.edu 36 6 151714452 151714452 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005100 exon4 c.A3233G p.E1078G . . . SYNE1 23345 broad.mit.edu 36 6 152743964 152743964 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033071 exon56 c.G8900A p.G2967D . . . TIAM2 26230 broad.mit.edu 36 6 155511149 155511149 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012454 exon6 c.A2017G p.I673V . . . TULP4 56995 broad.mit.edu 36 6 158843525 158843525 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020245 exon13 c.G2842A p.V948I . . . TMEM181 57583 broad.mit.edu 36 6 158914446 158914446 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020823 exon2 c.G426A p.A142A . . . PNLDC1 154197 broad.mit.edu 36 6 160141812 160141812 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173516 exon2 c.C62T p.T21M . . . PNLDC1 154197 broad.mit.edu 36 6 160159593 160159593 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173516 exon16 c.G1141A p.E381K . . . IGF2R 3482 broad.mit.edu 36 6 160416989 160416989 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000876 exon36 c.G5287A p.A1763T . . . IGF2R 3482 broad.mit.edu 36 6 160437465 160437465 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000876 exon45 c.C6660T p.G2220G . . . SLC22A3 6581 broad.mit.edu 36 6 160749912 160749912 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021977 exon4 c.C826T p.L276L . . . MYLIP 29116 broad.mit.edu 36 6 16252065 16252065 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013262 exon5 c.A819G p.A273A . . . T 6862 broad.mit.edu 36 6 166492030 166492030 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003181 exon9 c.C1071T p.A357A . . . T 6862 broad.mit.edu 36 6 166496049 166496049 + Silent SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003181 exon7 c.T780G p.P260P . . . UNC93A 54346 broad.mit.edu 36 6 167641276 167641276 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143947 exon6 c.C870A p.S290S . . . SMOC2 64094 broad.mit.edu 36 6 168795806 168795806 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166412 exon11 c.G1258A p.G420S . . . RBM24 221662 broad.mit.edu 36 6 17400104 17400104 + Silent SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153020 exon3 c.A351T p.A117A . . . CDKAL1 54901 broad.mit.edu 36 6 20847791 20847791 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017774 exon6 c.G434A p.R145H . . . DCDC2 51473 broad.mit.edu 36 6 24282948 24282948 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195610 exon11 c.G1420A p.A474T . . . LRRC16A 55604 broad.mit.edu 36 6 25574119 25574119 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017640 exon9 c.G654A p.Q218Q . . . HIST1H1B 3009 broad.mit.edu 36 6 27942651 27942651 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005322 exon1 c.A636G p.K212K . . . HIST1H2BO 8348 broad.mit.edu 36 6 27969415 27969415 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003527 exon1 c.T196G p.F66V . . . ZNF187 7741 broad.mit.edu 36 6 28352299 28352299 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152736 exon4 c.C482A p.S161X . . . OR2H1 26716 broad.mit.edu 36 6 29537777 29537777 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030883 exon3 c.G252T p.W84C . . . ZFP57 346171 broad.mit.edu 36 6 29752661 29752661 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109809 exon1 c.C99A p.C33X . . . TRIM31 11074 broad.mit.edu 36 6 30179544 30179544 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007028 exon9 c.C1026T p.G342G . . . HLA-E 3133 broad.mit.edu 36 6 30566130 30566130 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005516 exon3 c.G469A p.V157M . . . DHX16 8449 broad.mit.edu 36 6 30746644 30746644 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003587 exon3 c.C511T p.R171C . . . KIAA1949 170954 broad.mit.edu 36 6 30761407 30761407 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134870 exon2 c.G368A p.R123K . . . DDR1 780 broad.mit.edu 36 6 30973920 30973920 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013993 exon17 c.C2308T p.R770W . . . HLA-C 3107 broad.mit.edu 36 6 31346088 31346088 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002117 exon4 c.G773T p.R258M . . . LTB 4050 broad.mit.edu 36 6 31657605 31657605 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002341 exon2 c.C173T p.T58M . . . BAT5 7920 broad.mit.edu 36 6 31777843 31777843 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021160 exon2 c.G176A p.S59N . . . C6orf25 80739 broad.mit.edu 36 6 31799143 31799143 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138272 exon1 c.G4A p.A2T . . . PSMB9 5698 broad.mit.edu 36 6 32933830 32933830 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002800 exon4 c.C331T p.R111X . . . BAK1 578 broad.mit.edu 36 6 33649571 33649571 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001188 exon6 c.T623A p.F208Y . . . GRM4 2914 broad.mit.edu 36 6 34103965 34103965 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000841 exon9 c.G2599A p.A867T . . . PACSIN1 29993 broad.mit.edu 36 6 34607385 34607385 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020804 exon9 c.C1068T p.Y356Y . . . SPDEF 25803 broad.mit.edu 36 6 34620043 34620043 + Silent SNP G A A rs2233638 unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012391 exon2 c.C168T p.S56S . . . UHRF1BP1 54887 broad.mit.edu 36 6 34934745 34934745 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017754 exon14 c.T2634C p.A878A . . . TMEM217 221468 broad.mit.edu 36 6 37294613 37294613 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145316 exon2 c.A172T p.N58Y . . . FTSJD2 23070 broad.mit.edu 36 6 37549291 37549291 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015050 exon17 c.G1757A p.R586H . . . DNAH8 1769 broad.mit.edu 36 6 38948768 38948768 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001371 exon49 c.G6695A p.R2232H . . . KIF6 221458 broad.mit.edu 36 6 39419533 39419533 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145027 exon22 c.C2358T p.T786T . . . KIF6 221458 broad.mit.edu 36 6 39506884 39506884 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145027 exon14 c.G1677T p.Q559H . . . DAAM2 23500 broad.mit.edu 36 6 39977669 39977669 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015345 exon25 c.G3082C p.A1028P . . . C6orf146 222826 broad.mit.edu 36 6 4022638 4022638 + Silent SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173563 exon2 c.A10C p.R4R . . . TRERF1 55809 broad.mit.edu 36 6 42312036 42312036 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033502 exon16 c.C2951T p.P984L . . . CUL9 23113 broad.mit.edu 36 6 43268829 43268829 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015089 exon9 c.C2293T p.R765W . . . CUL9 23113 broad.mit.edu 36 6 43275736 43275736 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015089 exon14 c.T3248C p.I1083T . . . CUL9 23113 broad.mit.edu 36 6 43288972 43288972 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015089 exon27 c.G5320A p.V1774M . . . TTBK1 84630 broad.mit.edu 36 6 43358774 43358774 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032538 exon14 c.C2318T p.A773V . . . TTBK1 84630 broad.mit.edu 36 6 43358905 43358905 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032538 exon14 c.A2449G p.R817G . . . POLH 5429 broad.mit.edu 36 6 43689868 43689868 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006502 exon11 c.G1738T p.G580W . . . VEGFA 7422 broad.mit.edu 36 6 43857759 43857759 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001025369 exon6 c.C1051T p.R351C . . . AARS2 57505 broad.mit.edu 36 6 44380815 44380815 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020745 exon11 c.C1533T p.D511D . . . ENPP4 22875 broad.mit.edu 36 6 46215291 46215291 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014936 exon2 c.A12G p.L4L . . . CYP39A1 51302 broad.mit.edu 36 6 46626111 46626111 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016593 exon12 c.T1361C p.V454A . . . TNFRSF21 27242 broad.mit.edu 36 6 47308659 47308659 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014452 exon6 c.G1769A p.R590H . . . CD2AP 23607 broad.mit.edu 36 6 47655144 47655144 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012120 exon9 c.A968T p.N323I . . . TFAP2D 83741 broad.mit.edu 36 6 50794820 50794820 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172238 exon3 c.G596T p.R199I . . . BMP5 653 broad.mit.edu 36 6 55847404 55847404 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021073 exon1 c.A219G p.Q73Q . . . DST 667 broad.mit.edu 36 6 56525071 56525071 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015548 exon42 c.G8609A p.R2870H . . . DST 667 broad.mit.edu 36 6 56614831 56614831 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015548 exon3 c.C289T p.Q97X . . . LMBRD1 55788 broad.mit.edu 36 6 70465730 70465730 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018368 exon13 c.C1264A p.L422I . . . COL19A1 1310 broad.mit.edu 36 6 70696236 70696236 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001858 exon6 c.A589C p.T197P . . . COL19A1 1310 broad.mit.edu 36 6 70703487 70703487 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001858 exon8 c.G837T p.Q279H . . . SSR1 6745 broad.mit.edu 36 6 7246589 7246589 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003144 exon4 c.G496A p.G166R . . . KCNQ5 56479 broad.mit.edu 36 6 73961688 73961688 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160133 exon15 c.G2686A p.G896S . . . CD109 135228 broad.mit.edu 36 6 74589947 74589947 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133493 exon33 c.C4208T p.S1403F . . . DSP 1832 broad.mit.edu 36 6 7513068 7513068 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008844 exon10 c.T1196C p.I399T . . . TMEM30A 55754 broad.mit.edu 36 6 76050875 76050875 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018247 exon1 c.G200A p.G67D . . . IMPG1 3617 broad.mit.edu 36 6 76801194 76801194 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001563 exon3 c.G332A p.R111Q . . . HTR1B 3351 broad.mit.edu 36 6 78229112 78229112 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000863 exon1 c.C728T p.T243M . . . BMP6 654 broad.mit.edu 36 6 7825427 7825427 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001718 exon7 c.T1394C p.V465A . . . IBTK 25998 broad.mit.edu 36 6 82957563 82957563 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015525 exon25 c.G3521T p.S1174I . . . DOPEY1 23033 broad.mit.edu 36 6 83876657 83876657 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015018 exon6 c.C586T p.R196C . . . DOPEY1 23033 broad.mit.edu 36 6 83934374 83934374 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015018 exon39 c.C7167T p.T2389T . . . CNR1 1268 broad.mit.edu 36 6 88910583 88910583 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160259 exon2 c.C1130T p.T377M . . . MDN1 23195 broad.mit.edu 36 6 90467267 90467267 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014611 exon56 c.A8457G p.Q2819Q . . . MDN1 23195 broad.mit.edu 36 6 90513865 90513865 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014611 exon27 c.A3808G p.I1270V . . . GJA10 84694 broad.mit.edu 36 6 90661055 90661055 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032602 exon1 c.G147A p.Q49Q . . . TMEM200A 114801 broad.mit.edu 36 6 130804121 130804121 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052913 exon2 c.861delT p.A287fs . . . OR2A4 79541 broad.mit.edu 36 6 132064064 132064064 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_030908 exon1 c.171delC p.P57fs . . . GRM1 2911 broad.mit.edu 36 6 146797080 146797080 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000838 exon9 c.3040delC p.P1014fs . . . DDR1 780 broad.mit.edu 36 6 30972526 30972526 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013993 exon14 c.1774delC p.P592fs . . . TAP2 6891 broad.mit.edu 36 6 32906062 32906062 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018833 exon9 c.1595delA p.K532fs . . . TAP2 6891 broad.mit.edu 36 6 32913766 32913766 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018833 exon2 c.223delC p.L75X . . . GRM4 2914 broad.mit.edu 36 6 34111777 34111777 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000841 exon8 c.2088delC p.P696fs . . . ENPP5 59084 broad.mit.edu 36 6 46243288 46243288 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021572 exon2 c.671delA p.K224fs . . . SNAP91 9892 broad.mit.edu 36 6 84428805 84428805 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014841 exon4 c.329delT p.L110fs . . . GJB7 375519 broad.mit.edu 36 6 88050699 88050699 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198568 exon3 c.651delA p.K217fs . . . MDN1 23195 broad.mit.edu 36 6 90472574 90472574 + Frame_Shift_Del DEL A - - rs35107588 unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014611 exon53 c.8073delT p.F2691fs . . . SLC22A23 63027 broad.mit.edu 36 6 3228987 3228988 + Frame_Shift_Del DEL AG - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 AG AG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . FBXO24 26261 broad.mit.edu 36 7 100036243 100036243 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163499 exon10 c.C1492T p.Q498X . . . ZAN 7455 broad.mit.edu 36 7 100196088 100196088 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173059 exon19 c.G3835A p.V1279M . . . SRRT 51593 broad.mit.edu 36 7 100323324 100323324 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128852 exon17 c.A2231G p.K744R . . . ZNHIT1 10467 broad.mit.edu 36 7 100653741 100653741 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006349 exon4 c.G341A p.R114H . . . CUX1 1523 broad.mit.edu 36 7 101632202 101632202 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181552 exon18 c.A2905G p.K969E . . . SH2B2 10603 broad.mit.edu 36 7 101744492 101744492 + Silent SNP G C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020979 exon5 c.G1174C p.A392P . . . NAPEPLD 222236 broad.mit.edu 36 7 102547882 102547882 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198990 exon3 c.C319T p.L107F . . . DNAJC2 27000 broad.mit.edu 36 7 102743466 102743466 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129887 exon13 c.G1458A p.T486T . . . RELN 5649 broad.mit.edu 36 7 103001887 103001887 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005045 exon30 c.G4399T p.G1467C . . . NRCAM 4897 broad.mit.edu 36 7 107607956 107607956 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037132 exon22 c.G2798T p.G933V . . . LRRN3 54674 broad.mit.edu 36 7 110551826 110551826 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018334 exon2 c.G1762T p.E588X . . . TMEM168 64418 broad.mit.edu 36 7 112211549 112211549 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022484 exon2 c.C568T p.L190L . . . PPP1R3A 5506 broad.mit.edu 36 7 113305894 113305894 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002711 exon4 c.A2489G p.K830R . . . ST7 7982 broad.mit.edu 36 7 116565742 116565742 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018412 exon8 c.T814C p.L272L . . . C7orf58 79974 broad.mit.edu 36 7 120416945 120416945 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024913 exon2 c.C34T p.R12X . . . PTPRZ1 5803 broad.mit.edu 36 7 121403466 121403466 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002851 exon5 c.C460T p.Q154X . . . RNF148 378925 broad.mit.edu 36 7 122129226 122129226 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198085 exon1 c.G815A p.R272H . . . GRM8 2918 broad.mit.edu 36 7 126670441 126670441 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127323 exon2 c.C54T p.T18T . . . FLNC 2318 broad.mit.edu 36 7 128272177 128272177 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001458 exon21 c.C3422T p.P1141L . . . IRF5 3663 broad.mit.edu 36 7 128376088 128376088 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098627 exon9 c.C1477T p.H493Y . . . PODXL 5420 broad.mit.edu 36 7 130846352 130846352 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018111 exon2 c.A481G p.K161E . . . PLXNA4 91584 broad.mit.edu 36 7 131499515 131499515 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020911 exon24 c.G4426A p.A1476T . . . PLXNA4 91584 broad.mit.edu 36 7 131515066 131515066 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020911 exon20 c.G3794A p.R1265H . . . PLXNA4 91584 broad.mit.edu 36 7 131842849 131842849 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181775 exon3 c.G1144A p.D382N . . . SLC13A4 26266 broad.mit.edu 36 7 135027653 135027653 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012450 exon11 c.G1178A p.R393Q . . . SLC37A3 84255 broad.mit.edu 36 7 139704909 139704909 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032295 exon6 c.G521A p.G174E . . . CLCN1 1180 broad.mit.edu 36 7 142723561 142723561 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000083 exon1 c.G134T p.R45M . . . EZH2 2146 broad.mit.edu 36 7 148155279 148155279 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152998 exon6 c.G521A p.R174H . . . ZNF746 155061 broad.mit.edu 36 7 148805699 148805699 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163474 exon5 c.G601A p.A201T . . . ACCN3 9311 broad.mit.edu 36 7 150380726 150380726 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020322 exon10 c.C1591A p.L531M . . . NOM1 64434 broad.mit.edu 36 7 156454562 156454562 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138400 exon10 c.G2319A p.L773L . . . ESYT2 57488 broad.mit.edu 36 7 158220998 158220998 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020728 exon20 c.A2543G p.N848S . . . SNX13 23161 broad.mit.edu 36 7 17896533 17896533 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015132 exon5 c.G418A p.A140T . . . DNAH11 8701 broad.mit.edu 36 7 21612640 21612640 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003777 exon19 c.T3720C p.H1240H . . . DNAH11 8701 broad.mit.edu 36 7 21642156 21642156 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003777 exon26 c.G4658T p.S1553I . . . DNAH11 8701 broad.mit.edu 36 7 21750695 21750695 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003777 exon50 c.G8291T p.X2764L . . . GPNMB 10457 broad.mit.edu 36 7 23260328 23260328 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005340 exon3 c.C239T p.A80V . . . EIF3B 8662 broad.mit.edu 36 7 2381557 2381557 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003751 exon14 c.G1897A p.G633S . . . CHST12 55501 broad.mit.edu 36 7 2439737 2439737 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018641 exon2 c.G937A p.E313K . . . OSBPL3 26031 broad.mit.edu 36 7 24840696 24840696 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145321 exon14 c.C1572T p.C524C . . . HOXA1 3198 broad.mit.edu 36 7 27101936 27101936 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153620 exon1 c.G121A p.A41T . . . JAZF1 221895 broad.mit.edu 36 7 27838953 27838953 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175061 exon5 c.G723A p.M241I . . . CARD11 84433 broad.mit.edu 36 7 2912912 2912912 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032415 exon25 c.C3351T p.Y1117Y . . . CCDC129 223075 broad.mit.edu 36 7 31580825 31580825 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194300 exon7 c.G542A p.R181H . . . AOAH 313 broad.mit.edu 36 7 36536637 36536637 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001637 exon19 c.G1434A p.E478E . . . VPS41 27072 broad.mit.edu 36 7 38763008 38763008 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014396 exon19 c.T1650C p.S550S . . . POU6F2 11281 broad.mit.edu 36 7 39213700 39213700 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007252 exon5 c.C467T p.A156V . . . CDK13 8621 broad.mit.edu 36 7 40069048 40069048 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003718 exon8 c.G2699A p.C900Y . . . GLI3 2737 broad.mit.edu 36 7 42154548 42154548 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000168 exon3 c.G169A p.A57T . . . SDK1 221935 broad.mit.edu 36 7 4243893 4243893 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152744 exon42 c.C6081T p.F2027F . . . POLM 27434 broad.mit.edu 36 7 44079995 44079995 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013284 exon9 c.G1226A p.C409Y . . . MYO1G 64005 broad.mit.edu 36 7 44971921 44971921 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033054 exon17 c.C2221T p.R741C . . . ABCA13 154664 broad.mit.edu 36 7 48237484 48237484 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152701 exon4 c.T385G p.F129V . . . IKZF1 10320 broad.mit.edu 36 7 50435713 50435713 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006060 exon8 c.G1454A p.G485D . . . TNRC18 84629 broad.mit.edu 36 7 5322176 5322176 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080495 exon25 c.G6799A p.G2267R . . . RNF216 54476 broad.mit.edu 36 7 5721324 5721324 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207116 exon11 c.C1548T p.R516R . . . ZNF680 340252 broad.mit.edu 36 7 63619306 63619306 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178558 exon4 c.C1261T p.L421F . . . AUTS2 26053 broad.mit.edu 36 7 69893269 69893269 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015570 exon19 c.G3131A p.R1044H . . . POM121 9883 broad.mit.edu 36 7 72051562 72051562 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172020 exon13 c.G2299A p.G767S . . . BAZ1B 9031 broad.mit.edu 36 7 72529993 72529993 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032408 exon7 c.G1734A p.K578K . . . HEATR2 54919 broad.mit.edu 36 7 735962 735962 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017802 exon2 c.C732T p.D244D . . . PTPN12 5782 broad.mit.edu 36 7 77103100 77103100 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001131009 exon14 c.G1750A p.E584K . . . HEATR2 54919 broad.mit.edu 36 7 780327 780327 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017802 exon10 c.C2048T p.A683V . . . PCLO 27445 broad.mit.edu 36 7 82424117 82424117 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033026 exon5 c.C4088T p.T1363M . . . PCLO 27445 broad.mit.edu 36 7 82602260 82602260 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033026 exon3 c.C2542T p.P848S . . . SEMA3D 223117 broad.mit.edu 36 7 84532719 84532719 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152754 exon6 c.C675T p.H225H . . . SEMA3D 223117 broad.mit.edu 36 7 84540270 84540270 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152754 exon4 c.G439A p.G147R . . . KIAA1324L 222223 broad.mit.edu 36 7 86385746 86385746 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152748 exon11 c.C1040T p.T347I . . . DMTF1 9988 broad.mit.edu 36 7 86655478 86655478 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142327 exon13 c.C1336T p.R446C . . . AKAP9 10142 broad.mit.edu 36 7 91408384 91408384 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147185 exon1 c.C35T p.A12V . . . ANKIB1 54467 broad.mit.edu 36 7 91855264 91855264 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019004 exon14 c.G1879A p.E627K . . . PON1 5444 broad.mit.edu 36 7 94775298 94775298 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000446 exon6 c.T659C p.F220S . . . PON2 5445 broad.mit.edu 36 7 94877225 94877225 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000305 exon6 c.T619C p.Y207H . . . TRRAP 8295 broad.mit.edu 36 7 98371206 98371206 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003496 exon28 c.A4083G p.S1361S . . . TRRAP 8295 broad.mit.edu 36 7 98444014 98444014 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003496 exon68 c.A10703G p.Y3568C . . . PTCD1 26024 broad.mit.edu 36 7 98868865 98868865 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015545 exon3 c.T566G p.L189R . . . ZNF394 84124 broad.mit.edu 36 7 98929544 98929544 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032164 exon3 c.C1230T p.G410G . . . AP4M1 9179 broad.mit.edu 36 7 99541030 99541030 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004722 exon11 c.C861T p.S287S . . . BCAP29 55973 broad.mit.edu 36 7 107021776 107021776 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001008405 exon3 c.334delT p.F112fs . . . CDCA7L 55536 broad.mit.edu 36 7 21909240 21909240 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127371 exon8 c.1077delC p.P359fs . . . ICA1 3382 broad.mit.edu 36 7 8164776 8164776 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004968 exon7 c.611delA p.N204fs . . . ANKIB1 54467 broad.mit.edu 36 7 91774850 91774850 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019004 exon3 c.430delA p.K144fs . . . RIMS2 9699 broad.mit.edu 36 8 104900969 104900970 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014677 exon1 c.58_59insT p.V20fs . . . DOCK5 80005 broad.mit.edu 36 8 25238905 25238906 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024940 exon18 c.1828_1829insC p.T610fs . . . PREX2 80243 broad.mit.edu 36 8 69155237 69155238 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024870 exon16 c.1648_1649insA p.E550fs . . . VPS13B 157680 broad.mit.edu 36 8 100935361 100935361 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152564 exon56 c.A10568G p.Y3523C . . . PABPC1 26986 broad.mit.edu 36 8 101794099 101794099 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002568 exon6 c.G833A p.R278H . . . SOX7 83595 broad.mit.edu 36 8 10621269 10621269 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031439 exon2 c.G556T p.G186C . . . FAM167A 83648 broad.mit.edu 36 8 11319500 11319500 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053279 exon3 c.G437T p.G146V . . . BLK 640 broad.mit.edu 36 8 11449798 11449798 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001715 exon7 c.C610T p.H204Y . . . ENPP2 5168 broad.mit.edu 36 8 120677272 120677272 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006209 exon12 c.A1124C p.D375A . . . EFR3A 23167 broad.mit.edu 36 8 133083190 133083190 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015137 exon20 c.T2160C p.V720V . . . PHF20L1 51105 broad.mit.edu 36 8 133918104 133918104 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016018 exon16 c.C2047T p.R683X . . . TG 7038 broad.mit.edu 36 8 134017192 134017192 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003235 exon25 c.G4942A p.A1648T . . . TG 7038 broad.mit.edu 36 8 134103528 134103528 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003235 exon40 c.C6987T p.I2329I . . . KHDRBS3 10656 broad.mit.edu 36 8 136630207 136630207 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006558 exon4 c.C353T p.A118V . . . FAM135B 51059 broad.mit.edu 36 8 139220519 139220519 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015912 exon18 c.T3793C p.L1265L . . . FAM135B 51059 broad.mit.edu 36 8 139233249 139233249 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015912 exon13 c.G2651A p.R884H . . . TSNARE1 203062 broad.mit.edu 36 8 143425079 143425079 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145003 exon3 c.T170C p.V57A . . . CYP11B1 1584 broad.mit.edu 36 8 143955162 143955162 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001026213 exon4 c.G737A p.R246H . . . PARP10 84875 broad.mit.edu 36 8 145130559 145130559 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032789 exon6 c.C1487T p.A496V . . . CPSF1 29894 broad.mit.edu 36 8 145595010 145595010 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013291 exon17 c.G1605A p.M535I . . . COMMD5 28991 broad.mit.edu 36 8 146047312 146047312 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001081004 exon2 c.G216A p.G72G . . . PCM1 5108 broad.mit.edu 36 8 17913555 17913555 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006197 exon34 c.A5450T p.D1817V . . . ARHGEF10 9639 broad.mit.edu 36 8 1802168 1802168 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014629 exon6 c.G615T p.W205C . . . XPO7 23039 broad.mit.edu 36 8 21891250 21891250 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015024 exon8 c.C787T p.Q263X . . . XPO7 23039 broad.mit.edu 36 8 21900668 21900668 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015024 exon14 c.A1648G p.M550V . . . HR 55806 broad.mit.edu 36 8 22042459 22042459 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018411 exon2 c.C170T p.P57L . . . LGI3 203190 broad.mit.edu 36 8 22062135 22062135 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139278 exon8 c.C1130T p.T377I . . . KIAA1967 57805 broad.mit.edu 36 8 22527683 22527683 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021174 exon9 c.C838T p.R280W . . . BIN3 55909 broad.mit.edu 36 8 22537504 22537504 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018688 exon8 c.C484T p.R162X . . . CLU 1191 broad.mit.edu 36 8 27513351 27513351 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171138 exon7 c.G1060A p.E354K . . . GOLGA7 51125 broad.mit.edu 36 8 41482683 41482683 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016099 exon4 c.C361T p.R121X . . . ANK1 286 broad.mit.edu 36 8 41700239 41700239 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020475 exon8 c.C781T p.R261W . . . C8orf42 157695 broad.mit.edu 36 8 432406 432406 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175075 exon3 c.C551T p.A184V . . . POTEA 340441 broad.mit.edu 36 8 43271663 43271663 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005365 exon3 c.T492C p.Y164Y . . . KIAA0146 23514 broad.mit.edu 36 8 48788702 48788702 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080394 exon16 c.A2287G p.M763V . . . PRKDC 5591 broad.mit.edu 36 8 48909437 48909437 + Silent SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081640 exon59 c.T8024G p.L2675R . . . PXDNL 137902 broad.mit.edu 36 8 52532616 52532616 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144651 exon9 c.T977G p.L326R . . . NPBWR1 2831 broad.mit.edu 36 8 54015165 54015165 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005285 exon1 c.G145A p.A49T . . . ATP6V1H 51606 broad.mit.edu 36 8 54847216 54847216 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015941 exon10 c.G935A p.C312Y . . . LYPLA1 10434 broad.mit.edu 36 8 55126233 55126233 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006330 exon8 c.T531C p.V177V . . . SOX17 64321 broad.mit.edu 36 8 55533488 55533488 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022454 exon1 c.T237C p.A79A . . . LYN 4067 broad.mit.edu 36 8 57085047 57085047 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002350 exon13 c.G1363A p.A455T . . . CHD7 55636 broad.mit.edu 36 8 61896955 61896955 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017780 exon10 c.C2750T p.T917M . . . PDE7A 5150 broad.mit.edu 36 8 66809631 66809631 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002603 exon7 c.C570T p.H190H . . . MSC 9242 broad.mit.edu 36 8 72918744 72918744 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005098 exon1 c.C224A p.P75H . . . TRPA1 8989 broad.mit.edu 36 8 73150170 73150170 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007332 exon1 c.G29A p.R10H . . . RDH10 157506 broad.mit.edu 36 8 74397754 74397754 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172037 exon6 c.A955G p.K319E . . . HNF4G 3174 broad.mit.edu 36 8 76627979 76627979 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004133 exon5 c.G607A p.D203N . . . HNF4G 3174 broad.mit.edu 36 8 76633608 76633608 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004133 exon8 c.G874A p.D292N . . . ZFAND1 79752 broad.mit.edu 36 8 82788726 82788726 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170797 exon6 c.C462T p.G154G . . . PSKH2 85481 broad.mit.edu 36 8 87145653 87145653 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033126 exon2 c.G509T p.G170V . . . RUNX1T1 862 broad.mit.edu 36 8 93052134 93052134 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198626 exon12 c.G1467A p.T489T . . . KIAA1429 25962 broad.mit.edu 36 8 95573110 95573110 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015496 exon22 c.T5012C p.I1671T . . . STK3 6788 broad.mit.edu 36 8 99661110 99661110 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006281 exon8 c.T906C p.H302H . . . ASAH1 427 broad.mit.edu 36 8 17966294 17966294 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004315 exon6 c.457delT p.Y153fs . . . PXDNL 137902 broad.mit.edu 36 8 52414808 52414808 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_144651 exon21 c.4075delA p.T1359fs . . . RP1 6101 broad.mit.edu 36 8 55703930 55703930 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006269 exon4 c.4935delT p.S1645fs . . . CA2 760 broad.mit.edu 36 8 86573887 86573887 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000067 exon4 c.434delT p.I145fs . . . KIAA1429 25962 broad.mit.edu 36 8 95608086 95608086 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015496 exon8 c.1562delT p.L521X . . . GLIS3 169792 broad.mit.edu 36 9 3888647 3888648 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . GRIN3A 116443 broad.mit.edu 36 9 103415581 103415581 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133445 exon6 c.C2664T p.S888S . . . SLC44A1 23446 broad.mit.edu 36 9 107111873 107111873 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080546 exon3 c.A174G p.L58L . . . RAD23B 5887 broad.mit.edu 36 9 109120929 109120929 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002874 exon6 c.C629T p.A210V . . . C9orf5 23731 broad.mit.edu 36 9 110852703 110852703 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032012 exon13 c.G1945A p.G649R . . . ZNF483 158399 broad.mit.edu 36 9 113345192 113345192 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133464 exon6 c.A2156G p.Y719C . . . FKBP15 23307 broad.mit.edu 36 9 114971836 114971836 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015258 exon26 c.G2974A p.V992I . . . FKBP15 23307 broad.mit.edu 36 9 114976657 114976657 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015258 exon22 c.G2251A p.A751T . . . DBC1 1620 broad.mit.edu 36 9 121016110 121016110 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014618 exon6 c.A830C p.N277T . . . PHF19 26147 broad.mit.edu 36 9 122676772 122676772 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015651 exon2 c.G69A p.K23K . . . GSN 2934 broad.mit.edu 36 9 123134588 123134588 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127664 exon19 c.C2082A p.T694T . . . OR1Q1 158131 broad.mit.edu 36 9 124417488 124417488 + Silent SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012364 exon1 c.C651A p.S217S . . . RABGAP1 23637 broad.mit.edu 36 9 124872508 124872508 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012197 exon15 c.C1967T p.A656V . . . OLFML2A 169611 broad.mit.edu 36 9 126589171 126589171 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182487 exon2 c.C187T p.R63X . . . PPP6C 5537 broad.mit.edu 36 9 126951788 126951788 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001123369 exon6 c.G837A p.T279T . . . C9orf150 286343 broad.mit.edu 36 9 12811484 12811484 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203403 exon2 c.A412G p.I138V . . . LMX1B 4010 broad.mit.edu 36 9 128495253 128495253 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002316 exon4 c.G571T p.D191Y . . . FAM129B 64855 broad.mit.edu 36 9 129333800 129333800 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022833 exon2 c.G134A p.R45H . . . SPTAN1 6709 broad.mit.edu 36 9 130410296 130410296 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195532 exon33 c.G4351A p.E1451K . . . PKN3 29941 broad.mit.edu 36 9 130520701 130520701 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013355 exon18 c.G2101A p.A701T . . . LRRC8A 56262 broad.mit.edu 36 9 130710522 130710522 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019594 exon3 c.C1258T p.L420F . . . C9orf50 375759 broad.mit.edu 36 9 131421666 131421666 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199350 exon3 c.C670A p.L224M . . . METTL11A 28989 broad.mit.edu 36 9 131436195 131436195 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014064 exon3 c.T204C p.C68C . . . LAMC3 10319 broad.mit.edu 36 9 132933435 132933435 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006059 exon15 c.C2743T p.R915W . . . GTF3C5 9328 broad.mit.edu 36 9 134916149 134916149 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122823 exon4 c.A731G p.N244S . . . COL5A1 1289 broad.mit.edu 36 9 136851810 136851810 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000093 exon58 c.G4474A p.G1492S . . . KIAA0649 9858 broad.mit.edu 36 9 137517365 137517365 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014811 exon4 c.G1188T p.E396D . . . UBAC1 10422 broad.mit.edu 36 9 137971426 137971426 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016172 exon8 c.G877A p.A293T . . . COBRA1 25920 broad.mit.edu 36 9 139277401 139277401 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015456 exon5 c.G689A p.R230Q . . . EHMT1 79813 broad.mit.edu 36 9 139832403 139832403 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024757 exon25 c.G3532A p.D1178N . . . FREM1 158326 broad.mit.edu 36 9 14832520 14832520 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144966 exon10 c.C1532A p.P511H . . . DENND4C 55667 broad.mit.edu 36 9 19332693 19332693 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017925 exon17 c.C2212T p.P738S . . . IFNA2 3440 broad.mit.edu 36 9 21374902 21374902 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000605 exon1 c.A427G p.R143G . . . KIAA1161 57462 broad.mit.edu 36 9 34361529 34361529 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020702 exon2 c.G1413A p.P471P . . . KIAA1161 57462 broad.mit.edu 36 9 34361720 34361720 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020702 exon2 c.C1222T p.R408C . . . KIAA1045 23349 broad.mit.edu 36 9 34961556 34961556 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015297 exon2 c.C261T p.G87G . . . TESK1 7016 broad.mit.edu 36 9 35596966 35596966 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006285 exon4 c.G523A p.D175N . . . CD72 971 broad.mit.edu 36 9 35601807 35601807 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001782 exon7 c.G944A p.R315H . . . TLN1 7094 broad.mit.edu 36 9 35702990 35702990 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006289 exon27 c.G3403A p.A1135T . . . CCIN 881 broad.mit.edu 36 9 36161259 36161259 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005893 exon1 c.G1760T p.R587M . . . GNE 10020 broad.mit.edu 36 9 36207509 36207509 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128227 exon12 c.C2115T p.H705H . . . FBXO10 26267 broad.mit.edu 36 9 37527870 37527870 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012166 exon3 c.G656A p.G219D . . . GLIS3 169792 broad.mit.edu 36 9 4108781 4108781 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152629 exon3 c.G232T p.A78S . . . GLDC 2731 broad.mit.edu 36 9 6546173 6546173 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000170 exon18 c.G2182A p.G728R . . . KANK1 23189 broad.mit.edu 36 9 702566 702566 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153186 exon2 c.C1326T p.C442C . . . SMC5 23137 broad.mit.edu 36 9 72123667 72123667 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015110 exon15 c.A2118C p.Q706H . . . TRPM3 80036 broad.mit.edu 36 9 72423679 72423679 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007471 exon16 c.C2246T p.A749V . . . C9orf85 138241 broad.mit.edu 36 9 73716489 73716489 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182505 exon1 c.A19G p.N7D . . . C9orf41 138199 broad.mit.edu 36 9 76788519 76788519 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152420 exon8 c.T1214C p.V405A . . . GCNT1 2650 broad.mit.edu 36 9 78307472 78307472 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001097635 exon3 c.G355A p.A119T . . . GCNT1 2650 broad.mit.edu 36 9 78307711 78307711 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001097635 exon3 c.C594A p.N198K . . . PRUNE2 158471 broad.mit.edu 36 9 78449495 78449495 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015225 exon12 c.G8708T p.R2903M . . . PRUNE2 158471 broad.mit.edu 36 9 78509845 78509845 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015225 exon8 c.C7165A p.L2389M . . . PSAT1 29968 broad.mit.edu 36 9 80113157 80113157 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058179 exon6 c.T578C p.V193A . . . UBQLN1 29979 broad.mit.edu 36 9 85482538 85482538 + Silent SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053067 exon6 c.T1029C p.G343G . . . C9orf64 84267 broad.mit.edu 36 9 85760203 85760203 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032307 exon2 c.C510T p.C170C . . . DAPK1 1612 broad.mit.edu 36 9 89454707 89454707 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004938 exon16 c.G1480A p.A494T . . . C9orf79 286234 broad.mit.edu 36 9 89692834 89692834 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178828 exon4 c.C3612T p.G1204G . . . SEMA4D 10507 broad.mit.edu 36 9 91168673 91168673 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142287 exon19 c.T1895C p.I632T . . . NFIL3 4783 broad.mit.edu 36 9 93212566 93212566 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005384 exon2 c.G272A p.R91H . . . OGN 4969 broad.mit.edu 36 9 94205468 94205468 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014057 exon2 c.C43T p.P15S . . . WNK2 65268 broad.mit.edu 36 9 95091527 95091527 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006648 exon19 c.G4670A p.R1557Q . . . PTPDC1 138639 broad.mit.edu 36 9 95886818 95886818 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152422 exon1 c.C185T p.A62V . . . CORO2A 7464 broad.mit.edu 36 9 99936981 99936981 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003389 exon4 c.G396A p.A132A . . . OR1J4 26219 broad.mit.edu 36 9 124321546 124321546 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001004452 exon1 c.306delT p.Y102fs . . . TAF1L 138474 broad.mit.edu 36 9 32621885 32621885 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153809 exon1 c.3693delT p.F1231fs . . . KIF24 347240 broad.mit.edu 36 9 34247623 34247623 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194313 exon11 c.1982delA p.K661fs . . . PIGO 84720 broad.mit.edu 36 9 35081693 35081693 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032634 exon7 c.2191delC p.R731fs . . . CREB3 10488 broad.mit.edu 36 9 35723041 35723041 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006368 exon2 c.178delC p.P60fs . . . CDKL5 6792 broad.mit.edu 36 X 18578458 18578459 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003159 exon20 c.2805_2806insT p.Y935fs . . . ACRC 93953 broad.mit.edu 36 X 70747309 70747310 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052957 exon11 c.1665_1666insT p.G555fs . . . ZMAT1 84460 broad.mit.edu 36 X 101025543 101025543 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011657 exon7 c.A1512C p.Q504H . . . ZMAT1 84460 broad.mit.edu 36 X 101025983 101025983 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011657 exon7 c.C1072T p.H358Y . . . CLCN4 1183 broad.mit.edu 36 X 10141808 10141808 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001830 exon11 c.C1664T p.A555V . . . CLCN4 1183 broad.mit.edu 36 X 10141921 10141921 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001830 exon11 c.C1777T p.R593C . . . IL1RAPL2 26280 broad.mit.edu 36 X 104326911 104326911 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017416 exon3 c.C181T p.R61C . . . TEX13A 56157 broad.mit.edu 36 X 104351053 104351053 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031274 exon3 c.G481A p.G161S . . . COL4A6 1288 broad.mit.edu 36 X 107318498 107318498 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033641 exon21 c.C1492T p.P498S . . . COL4A6 1288 broad.mit.edu 36 X 107324973 107324973 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033641 exon15 c.C943T p.Q315X . . . DCX 1641 broad.mit.edu 36 X 110442560 110442560 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178153 exon6 c.C992T p.T331M . . . DCX 1641 broad.mit.edu 36 X 110540184 110540184 + Silent SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178153 exon2 c.C99A p.A33A . . . DCX 1641 broad.mit.edu 36 X 110540716 110540716 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000555 exon1 c.A143G p.H48R . . . LHFPL1 340596 broad.mit.edu 36 X 111801184 111801184 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178175 exon2 c.T91C p.Y31H . . . LONRF3 79836 broad.mit.edu 36 X 118035559 118035559 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024778 exon10 c.A2035T p.M679L . . . NKRF 55922 broad.mit.edu 36 X 118608932 118608932 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173487 exon4 c.T529A p.F177I . . . CUL4B 8450 broad.mit.edu 36 X 119558368 119558368 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079872 exon11 c.G1521T p.K507N . . . MCTS1 28985 broad.mit.edu 36 X 119630089 119630089 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001137554 exon6 c.G491A p.G164D . . . XIAP 331 broad.mit.edu 36 X 122847663 122847663 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167 exon2 c.A470G p.N157S . . . TLR7 51284 broad.mit.edu 36 X 12815277 12815277 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016562 exon3 c.A1729C p.S577R . . . GPC4 2239 broad.mit.edu 36 X 132264689 132264689 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001448 exon9 c.G1543A p.A515T . . . CCDC160 347475 broad.mit.edu 36 X 133207310 133207310 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101357 exon2 c.G814A p.A272T . . . MOSPD1 56180 broad.mit.edu 36 X 133850880 133850880 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019556 exon6 c.A619G p.T207A . . . ZNF75D 7626 broad.mit.edu 36 X 134252601 134252601 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007131 exon5 c.G823T p.G275W . . . DDX26B 203522 broad.mit.edu 36 X 134541386 134541386 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182540 exon15 c.T2016C p.T672T . . . SLC9A6 10479 broad.mit.edu 36 X 134895432 134895432 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006359 exon1 c.C105T p.G35G . . . EGFL6 25975 broad.mit.edu 36 X 13546027 13546027 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167890 exon8 c.G1036T p.E346X . . . ARHGEF6 9459 broad.mit.edu 36 X 135584874 135584874 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004840 exon19 c.G1993A p.A665T . . . TCEANC 170082 broad.mit.edu 36 X 13591369 13591369 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152634 exon4 c.C911T p.T304M . . . ZIC3 7547 broad.mit.edu 36 X 136477156 136477156 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003413 exon1 c.G640A p.A214T . . . MCF2 4168 broad.mit.edu 36 X 138541294 138541294 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099855 exon6 c.G394A p.D132N . . . MAGEC3 139081 broad.mit.edu 36 X 140812238 140812238 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177456 exon5 c.C134T p.S45F . . . SLITRK4 139065 broad.mit.edu 36 X 142545337 142545337 + Silent SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173078 exon2 c.A1254T p.G418G . . . UBE2NL 389898 broad.mit.edu 36 X 142795032 142795032 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012989 exon1 c.G164A p.R55H . . . SLITRK2 84631 broad.mit.edu 36 X 144712540 144712540 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001144006 exon3 c.G905A p.S302N . . . SLITRK2 84631 broad.mit.edu 36 X 144713163 144713163 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144006 exon3 c.C1528T p.P510S . . . FMR1 2332 broad.mit.edu 36 X 146832359 146832359 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185082 exon13 c.G1229A p.R410H . . . MTM1 4534 broad.mit.edu 36 X 149558125 149558125 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000252 exon7 c.G496A p.V166I . . . GPR50 9248 broad.mit.edu 36 X 150099279 150099279 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004224 exon2 c.C566G p.T189S . . . VMA21 203547 broad.mit.edu 36 X 150324159 150324159 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017980 exon3 c.C277T p.R93X . . . PNMA5 114824 broad.mit.edu 36 X 151910786 151910786 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103150 exon2 c.C13T p.L5L . . . AVPR2 554 broad.mit.edu 36 X 152825221 152825221 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000054 exon3 c.A961G p.N321D . . . FLNA 2316 broad.mit.edu 36 X 153243844 153243844 + Silent SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001456 exon18 c.C2616A p.A872A . . . NHS 4810 broad.mit.edu 36 X 17660408 17660408 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136024 exon9 c.G4328A p.R1443Q . . . RAI2 10742 broad.mit.edu 36 X 17728632 17728632 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172739 exon3 c.G1420A p.V474M . . . CDKL5 6792 broad.mit.edu 36 X 18532036 18532036 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003159 exon12 c.C1071T p.D357D . . . GPR64 10149 broad.mit.edu 36 X 18938671 18938671 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184837 exon15 c.C1156T p.L386L . . . MAP7D2 256714 broad.mit.edu 36 X 19984823 19984823 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168465 exon4 c.T380C p.L127P . . . GYG2 8908 broad.mit.edu 36 X 2788030 2788030 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184703 exon8 c.C854T p.T285M . . . DCAF8L1 139425 broad.mit.edu 36 X 27908911 27908911 + Silent SNP G T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017930 exon1 c.C462A p.R154R . . . MAGEB1 4112 broad.mit.edu 36 X 30179330 30179330 + Missense_Mutation SNP C T T rs7062640 byCluster;byFrequency;byHapMap TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002363 exon4 c.C799T p.R267C . . . DMD 1756 broad.mit.edu 36 X 31134685 31134685 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004015 exon5 c.G380A p.R127H . . . MXRA5 25878 broad.mit.edu 36 X 3245604 3245604 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015419 exon6 c.C6118T p.L2040L . . . SRPX 8406 broad.mit.edu 36 X 37909050 37909050 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006307 exon5 c.G569A p.R190H . . . BCOR 54880 broad.mit.edu 36 X 39808586 39808586 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001123383 exon7 c.A3449G p.E1150G . . . BCOR 54880 broad.mit.edu 36 X 39818016 39818016 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001123383 exon4 c.G1527T p.W509C . . . MED14 9282 broad.mit.edu 36 X 40470942 40470942 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004229 exon3 c.G348A p.A116A . . . RGN 9104 broad.mit.edu 36 X 46825537 46825537 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152869 exon3 c.G50A p.G17D . . . RBM10 8241 broad.mit.edu 36 X 46924797 46924797 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005676 exon12 c.C1196T p.A399V . . . USP11 8237 broad.mit.edu 36 X 46984975 46984975 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004651 exon6 c.G856A p.A286T . . . SSX5 6758 broad.mit.edu 36 X 47934560 47934560 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175723 exon6 c.G419A p.R140H . . . TIMM17B 10245 broad.mit.edu 36 X 48639078 48639078 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167947 exon3 c.C34T p.R12X . . . OTUD5 55593 broad.mit.edu 36 X 48668111 48668111 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136157 exon6 c.C1219T p.R407W . . . PPP1R3F 89801 broad.mit.edu 36 X 49029466 49029466 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033215 exon4 c.C1370T p.A457V . . . NUDT10 170685 broad.mit.edu 36 X 51092800 51092800 + Silent SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153183 exon2 c.C243T p.G81G . . . MAGED1 9500 broad.mit.edu 36 X 51655012 51655012 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006986 exon3 c.C169T p.P57S . . . GNL3L 54552 broad.mit.edu 36 X 54587466 54587466 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019067 exon8 c.G612A p.Q204Q . . . UBQLN2 29978 broad.mit.edu 36 X 56607957 56607957 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013444 exon1 c.G926A p.R309H . . . EDA2R 60401 broad.mit.edu 36 X 65736066 65736066 + Silent SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199687 exon6 c.A879G p.E293E . . . YIPF6 286451 broad.mit.edu 36 X 67668487 67668487 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195214 exon6 c.G503A p.R168H . . . EFNB1 1947 broad.mit.edu 36 X 67975267 67975267 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004429 exon2 c.C211T p.R71W . . . KIF4A 24137 broad.mit.edu 36 X 69427071 69427071 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012310 exon2 c.C38T p.A13V . . . MED12 9968 broad.mit.edu 36 X 70268147 70268147 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005120 exon29 c.G4070A p.R1357H . . . GJB1 2705 broad.mit.edu 36 X 70360284 70360284 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000166 exon2 c.T2C p.M1T . . . PHKA1 5255 broad.mit.edu 36 X 71849390 71849390 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172436 exon2 c.G193A p.A65T . . . STS 412 broad.mit.edu 36 X 7185329 7185329 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000351 exon3 c.C199T p.Q67X . . . MAGEE1 57692 broad.mit.edu 36 X 75565789 75565789 + Silent SNP T G G novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020932 exon1 c.T1062G p.T354T . . . PNPLA4 8228 broad.mit.edu 36 X 7850117 7850117 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004650 exon3 c.A203T p.K68M . . . FAM133A 286499 broad.mit.edu 36 X 92851745 92851745 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171110 exon5 c.A671C p.K224T . . . SHROOM2 357 broad.mit.edu 36 X 9823199 9823199 + Silent SNP G A A novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001649 exon4 c.G1251A p.V417V . . . PCDH19 57526 broad.mit.edu 36 X 99549593 99549593 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105243 exon1 c.G659A p.G220D . . . NRK 203447 broad.mit.edu 36 X 105043392 105043392 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198465 exon14 c.2338delA p.K780fs . . . CHRDL1 91851 broad.mit.edu 36 X 109811471 109811471 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143981 exon10 c.1051delG p.V351fs . . . MAMLD1 10046 broad.mit.edu 36 X 149388732 149388732 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001177466 exon2 c.154delG p.G52fs . . . DMD 1756 broad.mit.edu 36 X 31803338 31803338 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004011 exon20 c.2963delA p.K988fs . . . UBQLN2 29978 broad.mit.edu 36 X 56608599 56608599 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013444 exon1 c.1568delC p.A523fs . . . TEX11 56159 broad.mit.edu 36 X 69815382 69815382 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3672-01A-01W-0900-09 TCGA-AA-3672-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001003811 exon16 c.1284delT p.F428fs . . .