Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
GRID1	2894	hgsc.bcm.edu	36	10	87956354	87956354	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_017551	exon3	c.C267T	p.A89A	.	.	.
HTR3B	9177	hgsc.bcm.edu	36	11	113309009	113309009	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_006028	exon6	c.C680A	p.A227E	.	.	.
OR5F1	338674	hgsc.bcm.edu	36	11	55517939	55517939	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_003697	exon1	c.G739T	p.A247S	.	.	.
LRP5	4041	hgsc.bcm.edu	36	11	67937741	67937741	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_002335	exon12	c.C2512T	p.R838W	.	.	.
RPH3A	22895	hgsc.bcm.edu	36	12	111813183	111813183	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_014954	exon18	c.C1755T	p.F585F	.	.	.
RERG	85004	hgsc.bcm.edu	36	12	15153687	15153687	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_032918	exon5	c.G224A	p.R75Q	.	.	.
STAT6	6778	hgsc.bcm.edu	36	12	55785292	55785292	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_001178078	exon9	c.G910A	p.A304T	.	.	.
BRCA2	675	hgsc.bcm.edu	36	13	31829964	31829964	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_000059	exon16	c.T7703G	p.F2568C	.	.	.
FARP1	10160	hgsc.bcm.edu	36	13	97828081	97828081	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_005766	exon6	c.T404G	p.L135R	.	.	.
PCCA	5095	hgsc.bcm.edu	36	13	99875897	99875897	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_001178004	exon20	c.G1756A	p.D586N	.	.	.
DYNC1H1	1778	hgsc.bcm.edu	36	14	101516041	101516041	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_001376	exon4	c.C751T	p.R251C	.	.	.
APEX1	328	hgsc.bcm.edu	36	14	19994824	19994824	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_080648	exon4	c.C404T	p.S135F	.	.	.
UBN1	29855	hgsc.bcm.edu	36	16	4865325	4865325	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_016936	exon14	c.C2913T	p.G971G	.	.	.
COG4	25839	hgsc.bcm.edu	36	16	69081790	69081790	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_015386	exon13	c.C1654T	p.L552L	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518272	7518272	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_001126114	exon7	c.G734A	p.G245D	 TP53,central_nervous_system,brain,Substitution - Missense,-1 	.	.
KPRP	448834	hgsc.bcm.edu	36	1	150999780	150999780	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_001025231	exon2	c.C1092T	p.G364G	.	.	.
FCRL3	115352	hgsc.bcm.edu	36	1	155932701	155932701	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_052939	exon7	c.C885T	p.T295T	.	.	.
CD5L	922	hgsc.bcm.edu	36	1	156072472	156072472	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_005894	exon3	c.C153T	p.D51D	.	.	.
LRRC8D	55144	hgsc.bcm.edu	36	1	90173127	90173127	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_001134479	exon3	c.G1912A	p.A638T	.	.	.
CACNG2	10369	hgsc.bcm.edu	36	22	35313486	35313486	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_006078	exon2	c.C267T	p.Y89Y	.	.	.
GTPBP1	9567	hgsc.bcm.edu	36	22	37442694	37442694	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_004286	exon4	c.C577T	p.R193C	.	.	.
IL1R2	7850	hgsc.bcm.edu	36	2	101992540	101992540	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_173343	exon3	c.C152A	p.P51H	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179344409	179344409	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_133379	exon34	c.C7890T	p.T2630T	.	.	.
OTOF	9381	hgsc.bcm.edu	36	2	26537323	26537323	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_194323	exon27	c.G3312T	p.G1104G	.	.	.
ALK	238	hgsc.bcm.edu	36	2	29351553	29351553	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_004304	exon11	c.A1957T	p.R653X	.	.	.
LRIG1	26018	hgsc.bcm.edu	36	3	66540539	66540540	+	Frame_Shift_Ins	INS	-	-	CT	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	-	-	-	CT	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_015541	exon8	c.1002_1003insAG	p.S334fs	.	.	.
KTELC1	56983	hgsc.bcm.edu	36	3	120690470	120690470	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_152305	exon8	c.C743T	p.T248I	.	.	.
GSK3B	2932	hgsc.bcm.edu	36	3	121068129	121068129	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_002093	exon9	c.C946T	p.R316W	.	.	.
RAF1	5894	hgsc.bcm.edu	36	3	12620699	12620699	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_002880	exon7	c.C770T	p.S257L	.	.	.
CEP63	80254	hgsc.bcm.edu	36	3	135747205	135747205	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_001042383	exon7	c.C643T	p.R215W	.	.	.
CCDC50	152137	hgsc.bcm.edu	36	3	192589994	192589994	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_174908	exon10	c.C810A	p.I270I	.	.	.
CCRN4L	25819	hgsc.bcm.edu	36	4	140185931	140185931	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_012118	exon3	c.A1149G	p.K383K	.	.	.
FGG	2266	hgsc.bcm.edu	36	4	155752716	155752716	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_021870	exon3	c.G211A	p.D71N	.	.	.
PPM1K	152926	hgsc.bcm.edu	36	4	89418670	89418670	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_152542	exon2	c.C90T	p.D30D	.	.	.
APC	324	hgsc.bcm.edu	36	5	112190790	112190790	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_001127511	exon10	c.C1441T	p.R481X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
TCOF1	6949	hgsc.bcm.edu	36	5	149729324	149729324	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_001135243	exon6	c.A605G	p.D202G	.	.	.
ADAMTS12	81792	hgsc.bcm.edu	36	5	33585094	33585094	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_030955	exon21	c.C4277T	p.A1426V	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152485328	152485328	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_015293	exon61	c.C9902T	p.S3301F	.	.	.
C6orf118	168090	hgsc.bcm.edu	36	6	165635711	165635711	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_144980	exon2	c.C90T	p.C30C	.	.	.
PRSS35	167681	hgsc.bcm.edu	36	6	84291067	84291067	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_001170423	exon3	c.C1188T	p.Y396Y	.	.	.
GRM8	2918	hgsc.bcm.edu	36	7	126036682	126036682	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_001127323	exon8	c.C1464A	p.I488I	.	.	.
LRGUK	136332	hgsc.bcm.edu	36	7	133534587	133534587	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_144648	exon14	c.G1621A	p.E541K	.	.	.
FAM126A	84668	hgsc.bcm.edu	36	7	22951959	22951959	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_032581	exon11	c.C1340T	p.A447V	.	.	.
WBSCR17	64409	hgsc.bcm.edu	36	7	70523994	70523994	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_022479	exon5	c.G929A	p.W310X	.	.	.
SDK1	221935	hgsc.bcm.edu	36	7	3958046	3958046	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_152744	exon7	c.C1118T	p.P373L	.	.	.
RNF19A	25897	hgsc.bcm.edu	36	8	101341382	101341382	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_015435	exon10	c.G1702T	p.V568L	.	.	.
ZNF596	169270	hgsc.bcm.edu	36	8	186070	186070	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_001042416	exon6	c.G1223A	p.R408Q	.	.	.
KCNB2	9312	hgsc.bcm.edu	36	8	74011513	74011513	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_004770	exon3	c.G1369T	p.A457S	.	.	.
CDX4	1046	hgsc.bcm.edu	36	X	72583958	72583958	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_005193	exon1	c.G144A	p.P48P	.	.	.
RPS6KA6	27330	hgsc.bcm.edu	36	X	83247489	83247489	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	07231d20-e88e-439e-be0d-702058508870	26e967bb-f3a3-4a74-92c3-21a6ca693f5c	NM_014496	exon16	c.C1417T	p.R473C	.	.	.