Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
CHUK	1147	hgsc.bcm.edu	36	10	101970411	101970411	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001278	exon5	c.G398A	p.R133Q	 CHUK,large_intestine,NS,Substitution - Nonsense,-1 	.	.
PKD2L1	9033	hgsc.bcm.edu	36	10	102044763	102044763	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_016112	exon8	c.C1464A	p.F488L	.	.	.
SFXN3	81855	hgsc.bcm.edu	36	10	102784542	102784542	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_030971	exon3	c.G113A	p.R38Q	.	.	.
PDCD11	22984	hgsc.bcm.edu	36	10	105183771	105183771	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014976	exon23	c.C3551A	p.S1184Y	.	.	.
SH3PXD2A	9644	hgsc.bcm.edu	36	10	105362914	105362914	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014631	exon11	c.C860T	p.A287V	.	.	.
C10orf79	80217	hgsc.bcm.edu	36	10	105913943	105913943	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_025145	exon24	c.C3145T	p.R1049X	.	.	.
SORCS1	114815	hgsc.bcm.edu	36	10	108427065	108427065	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_052918	exon13	c.C1828A	p.L610I	.	.	.
DUSP5	1847	hgsc.bcm.edu	36	10	112259890	112259890	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004419	exon4	c.G871A	p.D291N	.	.	.
TDRD1	56165	hgsc.bcm.edu	36	10	115975951	115975951	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_198795	exon22	c.G3161T	p.R1054I	.	.	.
ATRNL1	26033	hgsc.bcm.edu	36	10	117049563	117049563	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_207303	exon16	c.G2445T	p.K815N	.	.	.
TACC2	10579	hgsc.bcm.edu	36	10	123836779	123836779	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_206862	exon4	c.G4774T	p.D1592Y	.	.	.
TACC2	10579	hgsc.bcm.edu	36	10	123960105	123960105	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_206860	exon3	c.G409A	p.A137T	.	.	.
FAM24A	118670	hgsc.bcm.edu	36	10	124661144	124661144	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001029888	exon2	c.G4A	p.A2T	.	.	.
CTBP2	1488	hgsc.bcm.edu	36	10	126704873	126704873	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_022802	exon1	c.G1446A	p.T482T	.	.	.
CLRN3	119467	hgsc.bcm.edu	36	10	129572112	129572112	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152311	exon2	c.A247C	p.N83H	.	.	.
KNDC1	85442	hgsc.bcm.edu	36	10	134870224	134870224	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152643	exon18	c.A3433G	p.T1145A	.	.	.
PTPLA	9200	hgsc.bcm.edu	36	10	17685984	17685984	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014241	exon2	c.A326C	p.K109T	.	.	.
MAP3K8	1326	hgsc.bcm.edu	36	10	30779445	30779445	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005204	exon5	c.G757T	p.D253Y	.	.	.
KIF5B	3799	hgsc.bcm.edu	36	10	32360145	32360145	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004521	exon14	c.T1443C	p.N481N	.	.	.
CUL2	8453	hgsc.bcm.edu	36	10	35367986	35367986	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001198777	exon9	c.C745T	p.R249X	.	.	.
DIP2C	22982	hgsc.bcm.edu	36	10	451740	451740	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014974	exon7	c.C828A	p.F276L	.	.	.
C10orf72	196740	hgsc.bcm.edu	36	10	49897802	49897802	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001031746	exon8	c.A862G	p.T288A	.	.	.
PCDH15	65217	hgsc.bcm.edu	36	10	55252510	55252510	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001142765	exon32	c.C4775A	p.S1592X	.	.	.
PCDH15	65217	hgsc.bcm.edu	36	10	55776132	55776132	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001142765	exon6	c.C593T	p.P198L	.	.	.
HKDC1	80201	hgsc.bcm.edu	36	10	70657038	70657038	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_025130	exon2	c.G133A	p.A45T	.	.	.
PPP3CB	5532	hgsc.bcm.edu	36	10	74900680	74900680	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001142354	exon7	c.T858G	p.I286M	.	.	.
MYST4	23522	hgsc.bcm.edu	36	10	76451796	76451796	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_012330	exon16	c.G3173C	p.R1058P	.	.	.
C10orf11	83938	hgsc.bcm.edu	36	10	77986996	77986996	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_032024	exon6	c.G541A	p.V181I	.	.	.
KCNMA1	3778	hgsc.bcm.edu	36	10	78502996	78502996	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002247	exon14	c.G1614A	p.P538P	.	.	.
KCNMA1	3778	hgsc.bcm.edu	36	10	78514412	78514412	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002247	exon12	c.G1512A	p.S504S	.	.	.
NRG3	10718	hgsc.bcm.edu	36	10	84108603	84108603	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001165972	exon2	c.C952T	p.R318W	.	.	.
GRID1	2894	hgsc.bcm.edu	36	10	87369765	87369765	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017551	exon14	c.G2199T	p.K733N	.	.	.
GRID1	2894	hgsc.bcm.edu	36	10	87474344	87474344	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017551	exon11	c.C1603T	p.R535W	.	.	.
SLC16A12	387700	hgsc.bcm.edu	36	10	91188599	91188599	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_213606	exon6	c.C770A	p.S257Y	.	.	.
LGI1	9211	hgsc.bcm.edu	36	10	95547032	95547032	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005097	exon8	c.G1156T	p.E386X	.	.	.
C10orf12	26148	hgsc.bcm.edu	36	10	98732571	98732571	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015652	exon1	c.G1434A	p.T478T	.	.	.
C10orf92	54777	hgsc.bcm.edu	36	10	134500391	134500391	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	.	.	.	.	.	.	.
MMP20	9313	hgsc.bcm.edu	36	11	101969489	101969489	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004771	exon8	c.C1138T	p.R380W	.	.	.
ATM	472	hgsc.bcm.edu	36	11	107721778	107721778	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000051	exon58	c.C8517A	p.F2839L	.	.	.
EXPH5	23086	hgsc.bcm.edu	36	11	107887080	107887080	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015065	exon6	c.C4364A	p.P1455Q	.	.	.
TEX12	56158	hgsc.bcm.edu	36	11	111546454	111546454	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_031275	exon3	c.G166T	p.D56Y	.	.	.
TEX12	56158	hgsc.bcm.edu	36	11	111546580	111546580	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_031275	exon4	c.T200G	p.M67R	.	.	.
CEP164	22897	hgsc.bcm.edu	36	11	116727910	116727910	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014956	exon5	c.C389T	p.S130L	.	.	.
DSCAML1	57453	hgsc.bcm.edu	36	11	116857140	116857140	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020693	exon13	c.C2795T	p.S932L	.	.	.
MPZL3	196264	hgsc.bcm.edu	36	11	117616291	117616291	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_198275	exon2	c.G85A	p.V29I	.	.	.
FOXR1	283150	hgsc.bcm.edu	36	11	118357151	118357151	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_181721	exon6	c.C874T	p.L292F	.	.	.
TRIM29	23650	hgsc.bcm.edu	36	11	119496519	119496519	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_012101	exon6	c.G1500T	p.K500N	.	.	.
SLC37A2	219855	hgsc.bcm.edu	36	11	124455883	124455883	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001145290	exon7	c.G691A	p.E231K	.	.	.
RICS	9743	hgsc.bcm.edu	36	11	128346221	128346221	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014715	exon13	c.G3008A	p.R1003Q	.	.	.
NTM	50863	hgsc.bcm.edu	36	11	131682816	131682816	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001048209	exon5	c.G550A	p.E184K	.	.	.
SAA1	6288	hgsc.bcm.edu	36	11	18247908	18247908	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001178006	exon5	c.C299T	p.A100V	.	.	.
LDHAL6A	160287	hgsc.bcm.edu	36	11	18455813	18455813	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001144071	exon7	c.G781T	p.E261X	.	.	.
NAV2	89797	hgsc.bcm.edu	36	11	20014200	20014200	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_145117	exon12	c.G2888A	p.R963Q	.	.	.
NAV2	89797	hgsc.bcm.edu	36	11	20083811	20083811	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_145117	exon35	c.G6803A	p.R2268H	.	.	.
SLC17A6	57084	hgsc.bcm.edu	36	11	22354168	22354168	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020346	exon10	c.C1239A	p.I413I	.	.	.
SLC5A12	159963	hgsc.bcm.edu	36	11	26699531	26699531	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_178498	exon1	c.T307C	p.F103L	.	.	.
KIF18A	81930	hgsc.bcm.edu	36	11	28066835	28066835	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_031217	exon6	c.C709T	p.R237X	.	.	.
CD44	960	hgsc.bcm.edu	36	11	35168086	35168086	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001001391	exon5	c.A565G	p.T189A	.	.	.
TRIM44	54765	hgsc.bcm.edu	36	11	35663419	35663419	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017583	exon2	c.G706A	p.E236K	.	.	.
SYT13	57586	hgsc.bcm.edu	36	11	45233965	45233965	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020826	exon2	c.C237T	p.F79F	.	.	.
CKAP5	9793	hgsc.bcm.edu	36	11	46786190	46786190	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014756	exon8	c.C945T	p.G315G	.	.	.
MADD	8567	hgsc.bcm.edu	36	11	47289939	47289939	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001135943	exon26	c.C3930A	p.I1310I	.	.	.
MADD	8567	hgsc.bcm.edu	36	11	47304907	47304907	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001135943	exon31	c.C4456T	p.R1486X	.	.	.
OR52A5	390054	hgsc.bcm.edu	36	11	5110235	5110235	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001005160	exon1	c.G214T	p.D72Y	.	.	.
OR51V1	283111	hgsc.bcm.edu	36	11	5177773	5177773	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001004760	exon1	c.A734C	p.K245T	.	.	.
OR51B4	79339	hgsc.bcm.edu	36	11	5279534	5279534	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_033179	exon1	c.C219T	p.F73F	.	.	.
TRIM6	117854	hgsc.bcm.edu	36	11	5583194	5583194	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001198644	exon3	c.C46T	p.R16X	.	.	.
TRIM6-TRIM34	445372	hgsc.bcm.edu	36	11	5583194	5583194	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001198644	exon3	c.C46T	p.R16X	.	.	.
FAM111B	374393	hgsc.bcm.edu	36	11	58649935	58649935	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001142704	exon2	c.G1699A	p.E567K	.	.	.
OR56A4	120793	hgsc.bcm.edu	36	11	5980690	5980690	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001005179	exon1	c.C265A	p.L89I	.	.	.
CATSPER1	117144	hgsc.bcm.edu	36	11	65547006	65547006	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_053054	exon2	c.T1319G	p.I440S	.	.	.
NUMA1	4926	hgsc.bcm.edu	36	11	71403580	71403580	+	Missense_Mutation	SNP	C	C	T	rs1053601	byCluster	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006185	exon15	c.G2617A	p.E873K	.	.	.
FCHSD2	9873	hgsc.bcm.edu	36	11	72227484	72227484	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014824	exon20	c.A2223G	p.X741W	.	.	.
DGAT2	84649	hgsc.bcm.edu	36	11	75189145	75189145	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_032564	exon8	c.G1111A	p.D371N	.	.	.
PRCP	5547	hgsc.bcm.edu	36	11	82237859	82237859	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005040	exon6	c.A801C	p.L267F	.	.	.
SYTL2	54843	hgsc.bcm.edu	36	11	85114479	85114479	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_206928	exon1	c.C669T	p.I223I	.	.	.
NAALAD2	10003	hgsc.bcm.edu	36	11	89520189	89520189	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005467	exon3	c.T238G	p.F80V	.	.	.
NAALAD2	10003	hgsc.bcm.edu	36	11	89550912	89550912	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005467	exon16	c.A1837G	p.T613A	.	.	.
SLC36A4	120103	hgsc.bcm.edu	36	11	92557261	92557261	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152313	exon3	c.A253C	p.K85Q	.	.	.
CCDC82	79780	hgsc.bcm.edu	36	11	95746276	95746276	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_024725	exon6	c.C995A	p.S332Y	.	.	.
C12orf59	120939	hgsc.bcm.edu	36	12	10223461	10223461	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_153022	exon1	c.C5T	p.S2L	.	.	.
BTBD11	121551	hgsc.bcm.edu	36	12	106438537	106438537	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001018072	exon2	c.G1279A	p.E427K	.	.	.
HVCN1	84329	hgsc.bcm.edu	36	12	109573412	109573412	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001040107	exon6	c.C636A	p.I212I	.	.	.
C12orf30	80018	hgsc.bcm.edu	36	12	110964262	110964262	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_024953	exon20	c.G2404T	p.E802X	.	.	.
PTPN11	5781	hgsc.bcm.edu	36	12	111375418	111375418	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002834	exon4	c.G369T	p.E123D	.	.	.
HPD	3242	hgsc.bcm.edu	36	12	120778688	120778688	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001171993	exon8	c.C132T	p.G44G	.	.	.
IL31	386653	hgsc.bcm.edu	36	12	121223080	121223080	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001014336	exon3	c.G327A	p.E109E	.	.	.
TCTN2	79867	hgsc.bcm.edu	36	12	122729785	122729785	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_024809	exon5	c.A560C	p.D187A	.	.	.
TMEM132D	121256	hgsc.bcm.edu	36	12	128581697	128581697	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_133448	exon3	c.G975A	p.K325K	.	.	.
EP400	57634	hgsc.bcm.edu	36	12	131096279	131096279	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015409	exon39	c.C7078T	p.H2360Y	.	.	.
POLE	5426	hgsc.bcm.edu	36	12	131763257	131763257	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006231	exon9	c.C857A	p.P286H	.	.	.
PTPRO	5800	hgsc.bcm.edu	36	12	15624909	15624909	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_030671	exon10	c.A576G	p.S192S	.	.	.
SLC6A12	6539	hgsc.bcm.edu	36	12	177414	177414	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003044	exon10	c.G863A	p.G288D	.	.	.
CAPZA3	93661	hgsc.bcm.edu	36	12	18782648	18782648	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_033328	exon1	c.C179A	p.S60Y	.	.	.
SLCO1C1	53919	hgsc.bcm.edu	36	12	20794916	20794916	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017435	exon14	c.T1839C	p.D613D	.	.	.
ABCC9	10060	hgsc.bcm.edu	36	12	21919866	21919866	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020298	exon14	c.G1973A	p.R658Q	.	.	.
ETNK1	55500	hgsc.bcm.edu	36	12	22703352	22703352	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018638	exon3	c.A821C	p.K274T	.	.	.
SOX5	6660	hgsc.bcm.edu	36	12	23607469	23607469	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006940	exon11	c.G1478A	p.R493Q	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25269829	25269829	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_033360	exon4	c.G436A	p.A146T	 KRAS,large_intestine,NS,Substitution - Missense,0 	.	.
CCDC91	55297	hgsc.bcm.edu	36	12	28494587	28494587	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018318	exon9	c.G893T	p.R298I	.	.	.
CAPRIN2	65981	hgsc.bcm.edu	36	12	30779334	30779334	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_023925	exon4	c.G644A	p.R215Q	.	.	.
YARS2	51067	hgsc.bcm.edu	36	12	32791560	32791560	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001040436	exon5	c.C1279T	p.R427X	.	.	.
LRRK2	120892	hgsc.bcm.edu	36	12	38994099	38994099	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_198578	exon32	c.A4595C	p.K1532T	.	.	.
PDZRN4	29951	hgsc.bcm.edu	36	12	40253648	40253648	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001164595	exon10	c.G2800A	p.E934K	.	.	.
PPHLN1	51535	hgsc.bcm.edu	36	12	41031989	41031989	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001143788	exon3	c.G108T	p.K36N	.	.	.
PRICKLE1	144165	hgsc.bcm.edu	36	12	41139915	41139915	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001144882	exon8	c.A2459C	p.K820T	.	.	.
PRICKLE1	144165	hgsc.bcm.edu	36	12	41145127	41145127	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001144882	exon7	c.C976T	p.R326X	.	.	.
SLC38A4	55089	hgsc.bcm.edu	36	12	45458343	45458343	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001143824	exon11	c.A1069G	p.K357E	.	.	.
AQP6	363	hgsc.bcm.edu	36	12	48653340	48653340	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001652	exon1	c.C117A	p.F39L	.	.	.
KRT6B	3854	hgsc.bcm.edu	36	12	51130506	51130506	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005555	exon2	c.G706A	p.D236N	.	.	.
ESPL1	9700	hgsc.bcm.edu	36	12	51955053	51955053	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_012291	exon7	c.A1692G	p.L564L	.	.	.
HOXC9	3225	hgsc.bcm.edu	36	12	52682669	52682669	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006897	exon2	c.C727T	p.R243X	.	.	.
NCKAP1L	3071	hgsc.bcm.edu	36	12	53189939	53189939	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001184976	exon7	c.T488C	p.V163A	.	.	.
NINJ2	4815	hgsc.bcm.edu	36	12	544733	544733	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_016533	exon3	c.G496A	p.V166I	.	.	.
MIP	4284	hgsc.bcm.edu	36	12	55133740	55133740	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_012064	exon2	c.C427T	p.L143F	.	.	.
NAB2	4665	hgsc.bcm.edu	36	12	55771315	55771315	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005967	exon2	c.C224T	p.A75V	.	.	.
GLI1	2735	hgsc.bcm.edu	36	12	56146315	56146315	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005269	exon8	c.G788A	p.G263E	.	.	.
SLC16A7	9194	hgsc.bcm.edu	36	12	58459629	58459629	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004731	exon5	c.G1339T	p.E447X	.	.	.
NINJ2	4815	hgsc.bcm.edu	36	12	642763	642763	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_016533	exon1	c.G163A	p.D55N	.	.	.
MRPL51	51258	hgsc.bcm.edu	36	12	6471703	6471703	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_016497	exon3	c.C382T	p.R128X	.	.	.
NUP107	57122	hgsc.bcm.edu	36	12	67369640	67369640	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020401	exon3	c.G161A	p.R54Q	.	.	.
C1S	716	hgsc.bcm.edu	36	12	7047437	7047437	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001734	exon12	c.G1288T	p.E430X	.	.	.
LIN7A	8825	hgsc.bcm.edu	36	12	79766177	79766177	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004664	exon3	c.C257T	p.A86V	.	.	.
SLC6A15	55117	hgsc.bcm.edu	36	12	83779792	83779792	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001146335	exon11	c.G1622T	p.S541I	.	.	.
LRRIQ1	84125	hgsc.bcm.edu	36	12	83974791	83974791	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001079910	exon8	c.G2089A	p.V697I	.	.	.
LRRIQ1	84125	hgsc.bcm.edu	36	12	83983274	83983274	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001079910	exon9	c.C2495A	p.S832Y	.	.	.
MGAT4C	25834	hgsc.bcm.edu	36	12	84907335	84907335	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_013244	exon5	c.T121G	p.L41V	.	.	.
KERA	11081	hgsc.bcm.edu	36	12	89973975	89973975	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_007035	exon2	c.G215T	p.R72I	.	.	.
TMCC3	57458	hgsc.bcm.edu	36	12	93499599	93499599	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020698	exon2	c.G925A	p.E309K	.	.	.
NALCN	259232	hgsc.bcm.edu	36	13	100534069	100534069	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_052867	exon31	c.C3577T	p.R1193C	.	.	.
NALCN	259232	hgsc.bcm.edu	36	13	100558105	100558105	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_052867	exon21	c.G2401A	p.E801K	.	.	.
MYO16	23026	hgsc.bcm.edu	36	13	108551198	108551198	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015011	exon28	c.C3334T	p.R1112X	.	.	.
UPF3A	65110	hgsc.bcm.edu	36	13	114075217	114075217	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_080687	exon6	c.C595T	p.R199X	.	.	.
ZMYM5	9205	hgsc.bcm.edu	36	13	19324028	19324028	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001142684	exon3	c.T293C	p.V98A	.	.	.
IFT88	8100	hgsc.bcm.edu	36	13	20113501	20113501	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006531	exon18	c.G1646A	p.R549Q	.	.	.
LATS2	26524	hgsc.bcm.edu	36	13	20451895	20451895	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014572	exon7	c.C2707A	p.L903I	.	.	.
SACS	26278	hgsc.bcm.edu	36	13	22810173	22810173	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014363	exon10	c.G5842A	p.D1948N	.	.	.
MIPEP	4285	hgsc.bcm.edu	36	13	23342157	23342157	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005932	exon6	c.G781T	p.D261Y	.	.	.
TRPC4	7223	hgsc.bcm.edu	36	13	37146374	37146374	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001135956	exon5	c.A1365G	p.A455A	.	.	.
TRPC4	7223	hgsc.bcm.edu	36	13	37255112	37255112	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001135956	exon2	c.A359C	p.K120T	.	.	.
KBTBD7	84078	hgsc.bcm.edu	36	13	40664412	40664412	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_032138	exon1	c.C1982A	p.S661Y	.	.	.
ZC3H13	23091	hgsc.bcm.edu	36	13	45447951	45447951	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015070	exon12	c.C1936T	p.R646X	.	.	.
SUCLA2	8803	hgsc.bcm.edu	36	13	47445447	47445447	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003850	exon5	c.G616T	p.E206X	.	.	.
CDADC1	81602	hgsc.bcm.edu	36	13	48750554	48750554	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001193478	exon7	c.C1118A	p.S373Y	.	.	.
CCDC70	83446	hgsc.bcm.edu	36	13	51337892	51337892	+	Missense_Mutation	SNP	G	G	A	rs61730661	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_031290	exon2	c.G377A	p.R126H	.	.	.
PCDH8	5100	hgsc.bcm.edu	36	13	52316989	52316989	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_032949	exon3	c.G2629A	p.A877T	.	.	.
OLFM4	10562	hgsc.bcm.edu	36	13	52514084	52514084	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006418	exon3	c.G396T	p.K132N	.	.	.
PCDH9	5101	hgsc.bcm.edu	36	13	66375664	66375664	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_203487	exon3	c.T3111G	p.I1037M	.	.	.
PCDH9	5101	hgsc.bcm.edu	36	13	66700319	66700319	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020403	exon2	c.T255G	p.I85M	.	.	.
KLHL1	57626	hgsc.bcm.edu	36	13	69212649	69212649	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020866	exon8	c.C1680T	p.G560G	.	.	.
LMO7	4008	hgsc.bcm.edu	36	13	75321316	75321316	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005358	exon26	c.A3405C	p.Q1135H	.	.	.
DCT	1638	hgsc.bcm.edu	36	13	93890217	93890217	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001129889	exon10	c.G1595A	p.R532Q	.	.	.
DCT	1638	hgsc.bcm.edu	36	13	93929278	93929278	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001129889	exon1	c.G233A	p.R78Q	.	.	.
DZIP1	22873	hgsc.bcm.edu	36	13	95040675	95040675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014934	exon16	c.G1645A	p.D549N	.	.	.
DZIP1	22873	hgsc.bcm.edu	36	13	95075055	95075055	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014934	exon8	c.G940T	p.E314X	.	.	.
IPO5	3843	hgsc.bcm.edu	36	13	97468829	97468829	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002271	exon26	c.C2760T	p.Y920Y	.	.	.
SLC15A1	6564	hgsc.bcm.edu	36	13	98135078	98135078	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005073	exon23	c.G2028A	p.A676A	.	.	.
SUPT16H	11198	hgsc.bcm.edu	36	14	20896326	20896326	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_007192	exon20	c.T2402G	p.F801C	.	.	.
PCK2	5106	hgsc.bcm.edu	36	14	23637400	23637400	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001018073	exon3	c.C424T	p.R142X	.	.	.
PCK2	5106	hgsc.bcm.edu	36	14	23642272	23642272	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004563	exon9	c.G1436A	p.R479H	.	.	.
PRKD1	5587	hgsc.bcm.edu	36	14	29175297	29175297	+	Silent	SNP	G	G	A	rs55831426	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002742	exon7	c.C1140T	p.G380G	.	.	.
ARHGAP5	394	hgsc.bcm.edu	36	14	31632789	31632789	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001173	exon2	c.G3163A	p.D1055N	.	.	.
AKAP6	9472	hgsc.bcm.edu	36	14	32361960	32361960	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004274	exon13	c.C5190T	p.S1730S	.	.	.
PPP2R3C	55012	hgsc.bcm.edu	36	14	34624634	34624634	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017917	exon13	c.C1275T	p.I425I	.	.	.
LRFN5	145581	hgsc.bcm.edu	36	14	41426154	41426154	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152447	exon3	c.C576T	p.S192S	.	.	.
FSCB	84075	hgsc.bcm.edu	36	14	44045798	44045798	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_032135	exon1	c.C143A	p.S48Y	.	.	.
C14orf106	55320	hgsc.bcm.edu	36	14	44757339	44757339	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018353	exon12	c.G2738A	p.R913Q	.	.	.
SOS2	6655	hgsc.bcm.edu	36	14	49682002	49682002	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006939	exon15	c.C2447A	p.S816Y	.	.	.
SOS2	6655	hgsc.bcm.edu	36	14	49696129	49696129	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006939	exon10	c.C1622A	p.S541Y	.	.	.
ATP5S	27109	hgsc.bcm.edu	36	14	49860512	49860512	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001003803	exon4	c.C461A	p.T154N	.	.	.
WDHD1	11169	hgsc.bcm.edu	36	14	54499546	54499546	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_007086	exon19	c.G2405A	p.R802H	.	.	.
KCNH5	27133	hgsc.bcm.edu	36	14	62244693	62244693	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_139318	exon11	c.C2253A	p.S751R	.	.	.
MTHFD1	4522	hgsc.bcm.edu	36	14	63963905	63963905	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005956	exon12	c.G1225A	p.V409M	.	.	.
MTHFD1	4522	hgsc.bcm.edu	36	14	63975581	63975581	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005956	exon17	c.G1612T	p.D538Y	.	.	.
FUT8	2530	hgsc.bcm.edu	36	14	65098077	65098077	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_178154	exon3	c.C43A	p.L15I	.	.	.
ZFYVE26	23503	hgsc.bcm.edu	36	14	67290190	67290190	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015346	exon39	c.T7175C	p.F2392S	.	.	.
SIPA1L1	26037	hgsc.bcm.edu	36	14	71241224	71241224	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015556	exon13	c.C3680A	p.S1227Y	.	.	.
ENTPD5	957	hgsc.bcm.edu	36	14	73513758	73513758	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001249	exon7	c.G514A	p.E172K	.	.	.
FLVCR2	55640	hgsc.bcm.edu	36	14	75175451	75175451	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017791	exon6	c.G1128A	p.E376E	.	.	.
GSTZ1	2954	hgsc.bcm.edu	36	14	76861011	76861011	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_145870	exon2	c.C61T	p.R21X	.	.	.
C14orf174	161394	hgsc.bcm.edu	36	14	76914822	76914822	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001010860	exon1	c.C1308T	p.N436N	.	.	.
TSHR	7253	hgsc.bcm.edu	36	14	80644489	80644489	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001018036	exon8	c.A632C	p.K211T	.	.	.
STON2	85439	hgsc.bcm.edu	36	14	80813751	80813751	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_033104	exon4	c.C1657T	p.P553S	.	.	.
C14orf102	55051	hgsc.bcm.edu	36	14	89825072	89825072	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_199043	exon9	c.A1707G	p.R569R	.	.	.
PPP4R4	57718	hgsc.bcm.edu	36	14	93786293	93786293	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_058237	exon15	c.G1643A	p.R548Q	.	.	.
SERPINA4	5267	hgsc.bcm.edu	36	14	94103091	94103091	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006215	exon3	c.G681A	p.R227R	.	.	.
EML1	2009	hgsc.bcm.edu	36	14	99386985	99386985	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004434	exon2	c.G110A	p.R37H	.	.	.
CAPN3	825	hgsc.bcm.edu	36	15	40490469	40490469	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_212465	exon25	c.G2080A	p.V694I	.	.	.
UBR1	197131	hgsc.bcm.edu	36	15	41104382	41104382	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_174916	exon25	c.G2676A	p.R892R	.	.	.
ATP8B4	79895	hgsc.bcm.edu	36	15	48126931	48126931	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_024837	exon4	c.A110C	p.K37T	.	.	.
CYP19A1	1588	hgsc.bcm.edu	36	15	49291915	49291915	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000103	exon9	c.A1157G	p.Y386C	.	.	.
DMXL2	23312	hgsc.bcm.edu	36	15	49560753	49560753	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015263	exon24	c.T5842C	p.S1948P	.	.	.
VPS13C	54832	hgsc.bcm.edu	36	15	59962169	59962169	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017684	exon67	c.G9413T	p.R3138L	.	.	.
RAB8B	51762	hgsc.bcm.edu	36	15	61324053	61324053	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_016530	exon2	c.T170G	p.I57S	.	.	.
MAP2K1	5604	hgsc.bcm.edu	36	15	64514478	64514478	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002755	exon2	c.G140A	p.R47Q	.	.	.
LCTL	197021	hgsc.bcm.edu	36	15	64640483	64640483	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_207338	exon6	c.A620G	p.E207G	.	.	.
CORO2B	10391	hgsc.bcm.edu	36	15	66724562	66724562	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001190456	exon2	c.C10T	p.R4C	.	.	.
GLCE	26035	hgsc.bcm.edu	36	15	67335726	67335726	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015554	exon3	c.C527A	p.S176Y	.	.	.
UACA	55075	hgsc.bcm.edu	36	15	68747748	68747748	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001008224	exon16	c.G2290T	p.E764X	.	.	.
UACA	55075	hgsc.bcm.edu	36	15	68748186	68748186	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001008224	exon16	c.A1852C	p.K618Q	.	.	.
MYO9A	4649	hgsc.bcm.edu	36	15	69930693	69930693	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006901	exon37	c.G6536A	p.R2179Q	.	.	.
MYO9A	4649	hgsc.bcm.edu	36	15	70125459	70125459	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006901	exon2	c.G500A	p.R167Q	.	.	.
SIN3A	25942	hgsc.bcm.edu	36	15	73455232	73455232	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001145357	exon20	c.C3418T	p.R1140X	.	.	.
WDR61	80349	hgsc.bcm.edu	36	15	76367694	76367694	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_025234	exon8	c.C648T	p.I216I	.	.	.
FAH	2184	hgsc.bcm.edu	36	15	78237553	78237553	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000137	exon2	c.G178A	p.D60N	.	.	.
TM6SF1	53346	hgsc.bcm.edu	36	15	81572652	81572652	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001144903	exon2	c.C192A	p.F64L	.	.	.
ADAMTSL3	57188	hgsc.bcm.edu	36	15	82430301	82430301	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_207517	exon20	c.C2552T	p.A851V	.	.	.
RHCG	51458	hgsc.bcm.edu	36	15	87823646	87823646	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_016321	exon5	c.G748A	p.A250T	.	.	.
ZNF774	342132	hgsc.bcm.edu	36	15	88705335	88705335	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001004309	exon4	c.G1268A	p.R423Q	.	.	.
IQGAP1	8826	hgsc.bcm.edu	36	15	88735028	88735028	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003870	exon2	c.G74T	p.R25I	.	.	.
SV2B	9899	hgsc.bcm.edu	36	15	89570732	89570732	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014848	exon3	c.G235T	p.D79Y	.	.	.
SV2B	9899	hgsc.bcm.edu	36	15	89570837	89570837	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014848	exon3	c.G340A	p.V114I	.	.	.
ST8SIA2	8128	hgsc.bcm.edu	36	15	90782678	90782678	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006011	exon4	c.G382A	p.D128N	.	.	.
ALDH1A3	220	hgsc.bcm.edu	36	15	99264891	99264891	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000693	exon11	c.G1276A	p.E426K	.	.	.
CHSY1	22856	hgsc.bcm.edu	36	15	99535412	99535412	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014918	exon3	c.C2113T	p.R705X	.	.	.
MNS1	55329	hgsc.bcm.edu	36	15	54524164	54524164	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	.	.	.	.	.	.	.
HCN4	10021	hgsc.bcm.edu	36	15	71409186	71409186	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	.	.	.	.	.	.	.
PDXDC1	23042	hgsc.bcm.edu	36	16	15037465	15037465	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015027	exon23	c.G2199A	p.E733E	.	.	.
NTAN1	123803	hgsc.bcm.edu	36	16	15041377	15041377	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_173474	exon8	c.C589T	p.R197W	.	.	.
DNAH3	55567	hgsc.bcm.edu	36	16	20940825	20940825	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017539	exon40	c.C5745A	p.F1915L	.	.	.
CDR2	1039	hgsc.bcm.edu	36	16	22283750	22283750	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001802	exon2	c.A166G	p.N56D	.	.	.
PLK1	5347	hgsc.bcm.edu	36	16	23599848	23599848	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005030	exon3	c.C690T	p.F230F	.	.	.
IL21R	50615	hgsc.bcm.edu	36	16	27356399	27356399	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_181079	exon5	c.G308A	p.C103Y	.	.	.
ATXN2L	11273	hgsc.bcm.edu	36	16	28753929	28753929	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_148416	exon19	c.G2483C	p.G828A	.	.	.
SRCAP	10847	hgsc.bcm.edu	36	16	30656305	30656305	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006662	exon34	c.C7443A	p.I2481I	.	.	.
ZNF500	26048	hgsc.bcm.edu	36	16	4742836	4742836	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_021646	exon6	c.G985A	p.E329K	.	.	.
IRX5	10265	hgsc.bcm.edu	36	16	53524018	53524018	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005853	exon2	c.C357T	p.N119N	.	.	.
KLKBL4	221191	hgsc.bcm.edu	36	16	56882399	56882399	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001080492	exon4	c.C228A	p.F76L	.	.	.
DDX19B	11269	hgsc.bcm.edu	36	16	68917080	68917080	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001014449	exon5	c.C268T	p.R90X	.	.	.
ZNF821	55565	hgsc.bcm.edu	36	16	70451812	70451812	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017530	exon6	c.C723T	p.S241S	.	.	.
ADAMTS18	170692	hgsc.bcm.edu	36	16	75959081	75959081	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_199355	exon4	c.C536T	p.S179L	.	.	.
TMEM186	25880	hgsc.bcm.edu	36	16	8797368	8797368	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015421	exon2	c.G584A	p.R195H	.	.	.
MYH8	4626	hgsc.bcm.edu	36	17	10245199	10245199	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002472	exon25	c.G3143A	p.R1048Q	.	.	.
MYH4	4622	hgsc.bcm.edu	36	17	10304271	10304271	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017533	exon13	c.G1240A	p.V414I	.	.	.
MYH2	4620	hgsc.bcm.edu	36	17	10386970	10386970	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001100112	exon10	c.G851T	p.R284I	.	.	.
MYH3	4621	hgsc.bcm.edu	36	17	10479866	10479866	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002470	exon28	c.G3886T	p.E1296X	.	.	.
DNAH9	1770	hgsc.bcm.edu	36	17	11496936	11496936	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001372	exon14	c.A2487T	p.K829N	.	.	.
ZNF18	7566	hgsc.bcm.edu	36	17	11822282	11822282	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_144680	exon9	c.G1367T	p.R456I	.	.	.
NCOR1	9611	hgsc.bcm.edu	36	17	15952944	15952944	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001190440	exon18	c.G2063A	p.R688Q	.	.	.
ZNF287	57336	hgsc.bcm.edu	36	17	16396259	16396259	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020653	exon6	c.T1922G	p.I641S	.	.	.
PHF12	57649	hgsc.bcm.edu	36	17	24272870	24272870	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020889	exon5	c.C798T	p.L266L	.	.	.
PIPOX	51268	hgsc.bcm.edu	36	17	24404566	24404566	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_016518	exon4	c.C487T	p.R163X	.	.	.
TAOK1	57551	hgsc.bcm.edu	36	17	24829469	24829469	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_025142	exon6	c.C427T	p.H143Y	.	.	.
ATAD5	79915	hgsc.bcm.edu	36	17	26244812	26244812	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_024857	exon21	c.A4815C	p.K1605N	.	.	.
NF1	4763	hgsc.bcm.edu	36	17	26570191	26570191	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001042492	exon14	c.G1570T	p.E524X	.	.	.
NF1	4763	hgsc.bcm.edu	36	17	26701353	26701353	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001042492	exon50	c.C7348T	p.R2450X	 NF1,soft_tissue,nerve_sheath,Substitution - Nonsense,0 	.	.
RHOT1	55288	hgsc.bcm.edu	36	17	27550639	27550639	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001033566	exon13	c.G1057T	p.E353X	.	.	.
CCL8	6355	hgsc.bcm.edu	36	17	29670667	29670667	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005623	exon1	c.C34T	p.L12F	.	.	.
TMEM132E	124842	hgsc.bcm.edu	36	17	29984037	29984037	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_207313	exon7	c.C1414T	p.R472W	.	.	.
MED24	9862	hgsc.bcm.edu	36	17	35463294	35463294	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001079518	exon2	c.G84T	p.K28N	.	.	.
CDC27	996	hgsc.bcm.edu	36	17	42571161	42571161	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001114091	exon13	c.T1665G	p.D555E	 CDC27,lung,NS,Substitution - Missense,0 	.	.
SP2	6668	hgsc.bcm.edu	36	17	43357743	43357743	+	Silent	SNP	G	G	T	rs1130932	byCluster;byFrequency;byHapMap	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003110	exon6	c.G1578T	p.V526V	.	.	.
GPR172B	55065	hgsc.bcm.edu	36	17	4877003	4877003	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001104577	exon5	c.G1320T	p.K440N	.	.	.
ZFP3	124961	hgsc.bcm.edu	36	17	4936341	4936341	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_153018	exon2	c.G818T	p.R273I	.	.	.
VPS53	55275	hgsc.bcm.edu	36	17	505937	505937	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001128159	exon6	c.G379T	p.E127X	.	.	.
RNF43	54894	hgsc.bcm.edu	36	17	53794944	53794944	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017763	exon6	c.C647T	p.S216L	.	.	.
SEPT4	5414	hgsc.bcm.edu	36	17	53952842	53952842	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004574	exon12	c.C1381T	p.R461W	.	.	.
MARCH10	162333	hgsc.bcm.edu	36	17	58167612	58167612	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152598	exon6	c.C1349A	p.S450Y	.	.	.
CCDC47	57003	hgsc.bcm.edu	36	17	59195171	59195171	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020198	exon4	c.C484T	p.R162C	.	.	.
FAM64A	54478	hgsc.bcm.edu	36	17	6294089	6294089	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_019013	exon5	c.T704C	p.L235P	.	.	.
BPTF	2186	hgsc.bcm.edu	36	17	63372340	63372340	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004459	exon23	c.C7432T	p.R2478C	.	.	.
ABCA6	23460	hgsc.bcm.edu	36	17	64621466	64621466	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_080284	exon14	c.G1790A	p.R597Q	.	.	.
ABCA5	23461	hgsc.bcm.edu	36	17	64761557	64761557	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018672	exon32	c.G4293T	p.K1431N	.	.	.
OTOP3	347741	hgsc.bcm.edu	36	17	70451377	70451377	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_178233	exon5	c.C768T	p.I256I	.	.	.
C17orf28	283987	hgsc.bcm.edu	36	17	70466630	70466630	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_030630	exon9	c.C1120A	p.L374I	.	.	.
UNC13D	201294	hgsc.bcm.edu	36	17	71343573	71343573	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_199242	exon18	c.G1554T	p.K518N	.	.	.
DNAH2	146754	hgsc.bcm.edu	36	17	7610521	7610521	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020877	exon21	c.G3672T	p.E1224D	.	.	.
MYH10	4628	hgsc.bcm.edu	36	17	8331595	8331595	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005964	exon34	c.C4834T	p.R1612W	.	.	.
WDR16	146845	hgsc.bcm.edu	36	17	9479570	9479570	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001080556	exon10	c.G1240A	p.D414N	.	.	.
GNAL	2774	hgsc.bcm.edu	36	18	11743891	11743891	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002071	exon4	c.C340T	p.R114X	.	.	.
ESCO1	114799	hgsc.bcm.edu	36	18	17407642	17407642	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_052911	exon4	c.G1161T	p.K387N	.	.	.
DSG4	147409	hgsc.bcm.edu	36	18	27247147	27247147	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_177986	exon16	c.T2714G	p.I905S	.	.	.
B4GALT6	9331	hgsc.bcm.edu	36	18	27459683	27459683	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004775	exon9	c.C1041T	p.I347I	.	.	.
MOCOS	55034	hgsc.bcm.edu	36	18	32034037	32034037	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017947	exon4	c.G693A	p.G231G	.	.	.
PIK3C3	5289	hgsc.bcm.edu	36	18	37830648	37830648	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002647	exon9	c.G940A	p.D314N	.	.	.
SLC14A2	8170	hgsc.bcm.edu	36	18	41497839	41497839	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_007163	exon11	c.C1443T	p.I481I	.	.	.
PIAS2	9063	hgsc.bcm.edu	36	18	42654986	42654986	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_173206	exon12	c.C1556T	p.S519L	.	.	.
SMAD4	4089	hgsc.bcm.edu	36	18	46827511	46827511	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005359	exon2	c.G97T	p.E33X	.	.	.
SMAD4	4089	hgsc.bcm.edu	36	18	46858734	46858734	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005359	exon12	c.G1558T	p.E520X	.	.	.
ZFP161	7541	hgsc.bcm.edu	36	18	5281189	5281189	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003409	exon3	c.A1018C	p.K340Q	.	.	.
SERPINB7	8710	hgsc.bcm.edu	36	18	59614498	59614498	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001040147	exon5	c.G355T	p.E119X	.	.	.
TMX3	54495	hgsc.bcm.edu	36	18	64519984	64519984	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_019022	exon5	c.C289T	p.R97X	.	.	.
PTPRM	5797	hgsc.bcm.edu	36	18	8377130	8377130	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002845	exon29	c.G4066A	p.D1356N	.	.	.
DNMT1	1786	hgsc.bcm.edu	36	19	10107814	10107814	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001379	exon37	c.G4591C	p.E1531Q	.	.	.
DAZAP1	26528	hgsc.bcm.edu	36	19	1369668	1369668	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018959	exon4	c.G241A	p.D81N	.	.	.
ZNF333	84449	hgsc.bcm.edu	36	19	14690800	14690800	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_032433	exon12	c.G1661A	p.R554Q	.	.	.
CYP4F22	126410	hgsc.bcm.edu	36	19	15515983	15515983	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_173483	exon10	c.G1029A	p.G343G	.	.	.
CYP4F2	8529	hgsc.bcm.edu	36	19	15867346	15867346	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001082	exon3	c.G313A	p.D105N	.	.	.
FAM129C	199786	hgsc.bcm.edu	36	19	17499166	17499166	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001098524	exon2	c.C110T	p.S37L	.	.	.
JAK3	3718	hgsc.bcm.edu	36	19	17809799	17809799	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000215	exon12	c.C1643T	p.A548V	.	.	.
ZNF43	7594	hgsc.bcm.edu	36	19	21782391	21782391	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003423	exon4	c.A2288C	p.K763T	.	.	.
ZNF555	148254	hgsc.bcm.edu	36	19	2804376	2804376	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152791	exon4	c.C1313A	p.S438Y	.	.	.
ZNF556	80032	hgsc.bcm.edu	36	19	2828779	2828779	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_024967	exon4	c.C823T	p.R275X	.	.	.
TSHZ3	57616	hgsc.bcm.edu	36	19	36460000	36460000	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020856	exon2	c.A2539G	p.I847V	.	.	.
TSHZ3	57616	hgsc.bcm.edu	36	19	36460168	36460168	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020856	exon2	c.G2371A	p.D791N	.	.	.
SLC7A9	11136	hgsc.bcm.edu	36	19	38043371	38043371	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014270	exon7	c.G730T	p.E244X	.	.	.
HKR1	284459	hgsc.bcm.edu	36	19	42529937	42529937	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_181786	exon4	c.C96T	p.F32F	.	.	.
RYR1	6261	hgsc.bcm.edu	36	19	43747468	43747468	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000540	exon91	c.C12654T	p.F4218F	.	.	.
RYR1	6261	hgsc.bcm.edu	36	19	43760663	43760663	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000540	exon99	c.C14343T	p.F4781F	.	.	.
CHAF1A	10036	hgsc.bcm.edu	36	19	4381593	4381593	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005483	exon11	c.C1902A	p.F634L	.	.	.
SUPT5H	6829	hgsc.bcm.edu	36	19	44641309	44641309	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001130825	exon5	c.G319A	p.D107N	.	.	.
PSMC4	5704	hgsc.bcm.edu	36	19	45170178	45170178	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006503	exon3	c.G198T	p.K66N	.	.	.
AXL	558	hgsc.bcm.edu	36	19	46450598	46450598	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_021913	exon16	c.T1812C	p.C604C	.	.	.
GRIK5	2901	hgsc.bcm.edu	36	19	47217949	47217949	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002088	exon13	c.C1687T	p.L563L	.	.	.
ZFP112	7771	hgsc.bcm.edu	36	19	49524902	49524902	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_013380	exon4	c.G1248A	p.K416K	.	.	.
CKM	1158	hgsc.bcm.edu	36	19	50510594	50510594	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001824	exon4	c.G450A	p.E150E	.	.	.
CKM	1158	hgsc.bcm.edu	36	19	50510675	50510675	+	Silent	SNP	A	A	G	rs1133190	by2Hit2Allele;byCluster;byFrequency;byHapMap;byOtherPop	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001824	exon4	c.T369C	p.P123P	.	.	.
CCDC8	83987	hgsc.bcm.edu	36	19	51606730	51606730	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_032040	exon1	c.C1178T	p.A393V	.	.	.
SLC8A2	6543	hgsc.bcm.edu	36	19	52632971	52632971	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015063	exon7	c.C1957A	p.L653I	.	.	.
PLA2G4C	8605	hgsc.bcm.edu	36	19	53294824	53294824	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003706	exon5	c.G363T	p.Q121H	.	.	.
HRC	3270	hgsc.bcm.edu	36	19	54348812	54348812	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002152	exon1	c.G1495A	p.D499N	.	.	.
KLK2	3817	hgsc.bcm.edu	36	19	56069911	56069911	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005551	exon2	c.C169A	p.P57T	 KLK2,skin,NS,Substitution - Missense,0 	.	.
FPR2	2358	hgsc.bcm.edu	36	19	56964187	56964187	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001462	exon2	c.T464G	p.V155G	.	.	.
FPR2	2358	hgsc.bcm.edu	36	19	56964758	56964758	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001462	exon2	c.G1035T	p.E345D	.	.	.
ZNF577	84765	hgsc.bcm.edu	36	19	57068642	57068642	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_032679	exon7	c.C413T	p.P138L	.	.	.
ZNF415	55786	hgsc.bcm.edu	36	19	58304764	58304764	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001164309	exon4	c.G346T	p.E116X	.	.	.
ZNF667	63934	hgsc.bcm.edu	36	19	61663875	61663875	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_022103	exon3	c.C155T	p.S52L	.	.	.
ZFP28	140612	hgsc.bcm.edu	36	19	61757540	61757540	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020828	exon8	c.G1574T	p.R525I	.	.	.
PEG3	5178	hgsc.bcm.edu	36	19	62018856	62018856	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001146187	exon9	c.C2394A	p.F798L	.	.	.
ZNF264	9422	hgsc.bcm.edu	36	19	62414726	62414726	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003417	exon4	c.C449A	p.S150Y	.	.	.
ZNF543	125919	hgsc.bcm.edu	36	19	62532111	62532111	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_213598	exon4	c.G1469A	p.R490H	.	.	.
ZNF549	256051	hgsc.bcm.edu	36	19	62740819	62740819	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001199295	exon4	c.G635T	p.R212I	.	.	.
VAV1	7409	hgsc.bcm.edu	36	19	6779149	6779149	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005428	exon10	c.G990T	p.M330I	.	.	.
VAV1	7409	hgsc.bcm.edu	36	19	6780926	6780926	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005428	exon14	c.G1395T	p.K465N	.	.	.
ZNF317	57693	hgsc.bcm.edu	36	19	9129008	9129008	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020933	exon4	c.C227A	p.S76Y	.	.	.
ZNF560	147741	hgsc.bcm.edu	36	19	9438848	9438848	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152476	exon10	c.G1775A	p.R592Q	.	.	.
ZNF560	147741	hgsc.bcm.edu	36	19	9445923	9445923	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152476	exon4	c.T109G	p.L37V	.	.	.
ZNF426	79088	hgsc.bcm.edu	36	19	9500304	9500304	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_024106	exon8	c.G1417T	p.E473X	.	.	.
COL5A3	50509	hgsc.bcm.edu	36	19	9977243	9977243	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015719	exon4	c.G585T	p.K195N	.	.	.
RDH8	50700	hgsc.bcm.edu	36	19	9990541	9990541	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015725	exon3	c.C397T	p.R133W	.	.	.
TGFB1	7040	hgsc.bcm.edu	36	19	46542610	46542610	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	.	.	.	.	.	.	.
ETNK2	55224	hgsc.bcm.edu	36	1	202372951	202372952	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018208	exon6	c.918_919insT	p.L306fs	.	.	.
FAM73A	374986	hgsc.bcm.edu	36	1	78104646	78104647	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_198549	exon14	c.1545_1546insA	p.Q515fs	.	.	.
NTNG1	22854	hgsc.bcm.edu	36	1	107492938	107492938	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014917	exon2	c.C200A	p.P67H	.	.	.
KIAA1324	57535	hgsc.bcm.edu	36	1	109529245	109529245	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020775	exon8	c.C1008A	p.F336L	.	.	.
KCNA10	3744	hgsc.bcm.edu	36	1	110862543	110862543	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005549	exon1	c.C390A	p.F130L	.	.	.
MTOR	2475	hgsc.bcm.edu	36	1	11113391	11113391	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004958	exon39	c.G5395A	p.E1799K	.	.	.
RSBN1	54665	hgsc.bcm.edu	36	1	114110224	114110224	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018364	exon7	c.A2310C	p.Q770H	.	.	.
CSDE1	7812	hgsc.bcm.edu	36	1	115063740	115063740	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_007158	exon17	c.T2106C	p.C702C	.	.	.
C1orf187	374946	hgsc.bcm.edu	36	1	11692088	11692088	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_198545	exon3	c.C621T	p.P207P	.	.	.
TNFRSF8	943	hgsc.bcm.edu	36	1	12087072	12087072	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001243	exon4	c.C318T	p.C106C	.	.	.
PDPN	10630	hgsc.bcm.edu	36	1	13783160	13783160	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006474	exon1	c.G273A	p.S91S	.	.	.
ANKRD34A	284615	hgsc.bcm.edu	36	1	144185312	144185312	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001039888	exon4	c.G627A	p.E209E	.	.	.
PRKAB2	5565	hgsc.bcm.edu	36	1	145104750	145104750	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005399	exon5	c.C489T	p.F163F	.	.	.
CHD1L	9557	hgsc.bcm.edu	36	1	145222691	145222691	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004284	exon16	c.G1749A	p.E583E	.	.	.
BCL9	607	hgsc.bcm.edu	36	1	145557720	145557720	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004326	exon8	c.G1135T	p.E379X	.	.	.
GJA5	2702	hgsc.bcm.edu	36	1	145697025	145697025	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005266	exon2	c.C946T	p.R316C	.	.	.
S100A9	6280	hgsc.bcm.edu	36	1	151599844	151599844	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002965	exon3	c.C251T	p.A84V	.	.	.
JTB	10899	hgsc.bcm.edu	36	1	152214931	152214931	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006694	exon4	c.C279A	p.F93L	.	.	.
AQP10	89872	hgsc.bcm.edu	36	1	152562210	152562210	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_080429	exon3	c.C361A	p.L121I	.	.	.
UBE2Q1	55585	hgsc.bcm.edu	36	1	152791550	152791550	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017582	exon7	c.G829A	p.E277K	.	.	.
DCST1	149095	hgsc.bcm.edu	36	1	153278578	153278578	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001143687	exon4	c.G263A	p.G88D	.	.	.
HCN3	57657	hgsc.bcm.edu	36	1	153521016	153521016	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020897	exon4	c.C933T	p.C311C	.	.	.
ARHGEF11	9826	hgsc.bcm.edu	36	1	155183428	155183428	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_198236	exon27	c.C2492T	p.S831F	.	.	.
OR6N2	81442	hgsc.bcm.edu	36	1	157013582	157013582	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001005278	exon1	c.C468T	p.P156P	.	.	.
SLAMF9	89886	hgsc.bcm.edu	36	1	158189933	158189933	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_033438	exon2	c.C181A	p.L61I	.	.	.
LMX1A	4009	hgsc.bcm.edu	36	1	163446593	163446593	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_177398	exon6	c.C714T	p.V238V	.	.	.
RXRG	6258	hgsc.bcm.edu	36	1	163655775	163655775	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006917	exon3	c.C398T	p.S133F	.	.	.
FAM78B	149297	hgsc.bcm.edu	36	1	164306459	164306459	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001017961	exon2	c.C429T	p.Y143Y	.	.	.
DUSP27	92235	hgsc.bcm.edu	36	1	165362644	165362644	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001080426	exon5	c.G1652T	p.R551I	.	.	.
BRP44	25874	hgsc.bcm.edu	36	1	166155885	166155885	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001143674	exon5	c.C303A	p.F101L	.	.	.
F5	2153	hgsc.bcm.edu	36	1	167772491	167772491	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000130	exon14	c.G4848T	p.K1616N	.	.	.
FMO3	2328	hgsc.bcm.edu	36	1	169343943	169343943	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006894	exon5	c.C584T	p.S195L	.	.	.
FMO4	2329	hgsc.bcm.edu	36	1	169577424	169577424	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002022	exon10	c.G1499A	p.R500Q	.	.	.
C1orf9	51430	hgsc.bcm.edu	36	1	170845791	170845791	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_016227	exon22	c.T3402G	p.F1134L	.	.	.
ASTN1	460	hgsc.bcm.edu	36	1	175400219	175400219	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_207108	exon1	c.G217A	p.D73N	.	.	.
TDRD5	163589	hgsc.bcm.edu	36	1	177898019	177898019	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001199085	exon15	c.C2480A	p.S827X	.	.	.
APOBEC4	403314	hgsc.bcm.edu	36	1	181883948	181883948	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_203454	exon2	c.C592A	p.L198I	.	.	.
C1orf26	54823	hgsc.bcm.edu	36	1	183410681	183410681	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001105518	exon5	c.C779T	p.S260L	.	.	.
PRG4	10216	hgsc.bcm.edu	36	1	184532698	184532698	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001127709	exon2	c.C68A	p.S23X	.	.	.
PDC	5132	hgsc.bcm.edu	36	1	184682315	184682315	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002597	exon3	c.A79C	p.N27H	.	.	.
TAS1R2	80834	hgsc.bcm.edu	36	1	19048444	19048444	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152232	exon4	c.C1445T	p.S482F	.	.	.
RGS1	5996	hgsc.bcm.edu	36	1	190815043	190815043	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002922	exon5	c.C598A	p.L200I	.	.	.
ASPM	259266	hgsc.bcm.edu	36	1	195365736	195365736	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018136	exon8	c.G2561A	p.R854H	.	.	.
KIF21B	23046	hgsc.bcm.edu	36	1	199239436	199239436	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017596	exon8	c.G1113T	p.K371N	.	.	.
CACNA1S	779	hgsc.bcm.edu	36	1	199329727	199329727	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000069	exon3	c.G304A	p.A102T	.	.	.
CNTN2	6900	hgsc.bcm.edu	36	1	203301007	203301007	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005076	exon13	c.T1689G	p.T563T	.	.	.
TMEM81	388730	hgsc.bcm.edu	36	1	203319575	203319575	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_203376	exon1	c.A497C	p.K166T	.	.	.
IL10	3586	hgsc.bcm.edu	36	1	205010893	205010893	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000572	exon3	c.G360A	p.R120R	.	.	.
CAMK1G	57172	hgsc.bcm.edu	36	1	207839969	207839969	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020439	exon3	c.T111G	p.V37V	.	.	.
HHAT	55733	hgsc.bcm.edu	36	1	208914324	208914324	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001122834	exon12	c.C1462A	p.Q488K	.	.	.
SMYD2	56950	hgsc.bcm.edu	36	1	212570177	212570177	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020197	exon8	c.G749T	p.R250I	.	.	.
CENPF	1063	hgsc.bcm.edu	36	1	212858619	212858619	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_016343	exon4	c.A440C	p.K147T	.	.	.
MARK1	4139	hgsc.bcm.edu	36	1	218901966	218901966	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018650	exon18	c.C2223A	p.F741L	.	.	.
CNIH3	149111	hgsc.bcm.edu	36	1	222939164	222939164	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152495	exon3	c.G194A	p.R65Q	.	.	.
COG2	22796	hgsc.bcm.edu	36	1	228861841	228861841	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_007357	exon2	c.C81T	p.F27F	.	.	.
COG2	22796	hgsc.bcm.edu	36	1	228871726	228871726	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_007357	exon7	c.G596A	p.R199H	.	.	.
TTC13	79573	hgsc.bcm.edu	36	1	229136169	229136169	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_024525	exon9	c.A962C	p.K321T	.	.	.
TSNAX	7257	hgsc.bcm.edu	36	1	229744965	229744965	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005999	exon4	c.C352T	p.R118X	.	.	.
KIAA1804	84451	hgsc.bcm.edu	36	1	231548945	231548945	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_032435	exon2	c.G940A	p.E314K	.	.	.
LUZP1	7798	hgsc.bcm.edu	36	1	23291422	23291422	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001142546	exon3	c.G1920A	p.P640P	.	.	.
LYST	1130	hgsc.bcm.edu	36	1	234036646	234036646	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000081	exon6	c.G2413A	p.E805K	.	.	.
ZNF670	93474	hgsc.bcm.edu	36	1	245269388	245269388	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_033213	exon2	c.G78T	p.K26N	.	.	.
OR2B11	127623	hgsc.bcm.edu	36	1	245681437	245681437	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001004492	exon1	c.C471T	p.F157F	.	.	.
RHCE	6006	hgsc.bcm.edu	36	1	25589927	25589927	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_138618	exon5	c.G701T	p.R234M	.	.	.
TMEM57	55219	hgsc.bcm.edu	36	1	25688288	25688288	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018202	exon9	c.G1534T	p.E512X	.	.	.
ARID1A	8289	hgsc.bcm.edu	36	1	26978941	26978941	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_139135	exon20	c.C5314T	p.R1772X	.	.	.
RNF19B	127544	hgsc.bcm.edu	36	1	33184697	33184697	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_153341	exon4	c.C1042A	p.L348I	.	.	.
ADC	113451	hgsc.bcm.edu	36	1	33356192	33356192	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_052998	exon11	c.G1132A	p.V378I	.	.	.
CSMD2	114784	hgsc.bcm.edu	36	1	33873424	33873424	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_052896	exon31	c.T4943G	p.F1648C	.	.	.
KIAA0562	9731	hgsc.bcm.edu	36	1	3743777	3743777	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014704	exon9	c.C1058A	p.S353Y	.	.	.
GJA9	81025	hgsc.bcm.edu	36	1	39114260	39114260	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_030772	exon2	c.G98A	p.R33Q	.	.	.
MACF1	23499	hgsc.bcm.edu	36	1	39521720	39521720	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_012090	exon10	c.G876A	p.S292S	.	.	.
TIE1	7075	hgsc.bcm.edu	36	1	43547690	43547690	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005424	exon9	c.C1233T	p.F411F	.	.	.
CYP4A11	1579	hgsc.bcm.edu	36	1	47173864	47173864	+	Missense_Mutation	SNP	C	C	A	rs62618709	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000778	exon5	c.G553T	p.V185F	.	.	.
CPT2	1376	hgsc.bcm.edu	36	1	53448995	53448995	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000098	exon4	c.A1061C	p.K354T	.	.	.
ALG6	29929	hgsc.bcm.edu	36	1	63640559	63640559	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_013339	exon4	c.T214C	p.Y72H	.	.	.
C1orf141	400757	hgsc.bcm.edu	36	1	67331644	67331644	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001013674	exon7	c.G835T	p.D279Y	.	.	.
C1orf173	127254	hgsc.bcm.edu	36	1	74870024	74870024	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001002912	exon7	c.A780G	p.P260P	.	.	.
ACADM	34	hgsc.bcm.edu	36	1	75988801	75988801	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001127328	exon10	c.C939T	p.F313F	.	.	.
ST6GALNAC3	256435	hgsc.bcm.edu	36	1	76650508	76650508	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001160011	exon3	c.G441A	p.A147A	.	.	.
LPHN2	23266	hgsc.bcm.edu	36	1	82181429	82181429	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_012302	exon5	c.C586T	p.R196C	.	.	.
CLCA1	1179	hgsc.bcm.edu	36	1	86732716	86732716	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001285	exon11	c.G1939A	p.A647T	.	.	.
GBP3	2635	hgsc.bcm.edu	36	1	89258924	89258924	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018284	exon2	c.G69A	p.A23A	.	.	.
LRRC8D	55144	hgsc.bcm.edu	36	1	90171968	90171968	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001134479	exon3	c.A753G	p.T251T	.	.	.
LZIC	84328	hgsc.bcm.edu	36	1	9918259	9918259	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_032368	exon3	c.A115G	p.T39A	.	.	.
TASP1	55617	hgsc.bcm.edu	36	20	13515966	13515966	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017714	exon5	c.G334T	p.E112X	.	.	.
FLRT3	23767	hgsc.bcm.edu	36	20	14254375	14254375	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_198391	exon3	c.C1778A	p.S593Y	.	.	.
NINL	22981	hgsc.bcm.edu	36	20	25382140	25382140	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_025176	exon24	c.C4096T	p.R1366C	.	.	.
ZNF337	26152	hgsc.bcm.edu	36	20	25604432	25604432	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015655	exon5	c.C1492T	p.R498W	.	.	.
HM13	81502	hgsc.bcm.edu	36	20	29596451	29596451	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_030789	exon4	c.C406T	p.R136X	.	.	.
ASXL1	171023	hgsc.bcm.edu	36	20	30479811	30479811	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015338	exon5	c.G396A	p.S132S	.	.	.
C20orf114	92747	hgsc.bcm.edu	36	20	31356321	31356321	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_033197	exon13	c.G1217A	p.R406Q	.	.	.
ITCH	83737	hgsc.bcm.edu	36	20	32559169	32559169	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_031483	exon25	c.G2498A	p.R833H	.	.	.
EPB41L1	2036	hgsc.bcm.edu	36	20	34261058	34261058	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_012156	exon15	c.G1903T	p.D635Y	.	.	.
SERINC3	10955	hgsc.bcm.edu	36	20	42562385	42562385	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006811	exon10	c.C1388T	p.A463V	.	.	.
SLC12A5	57468	hgsc.bcm.edu	36	20	44103530	44103530	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001134771	exon8	c.G1079A	p.R360Q	.	.	.
PTGIS	5740	hgsc.bcm.edu	36	20	47600016	47600016	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000961	exon2	c.C192A	p.I64I	.	.	.
CDS2	8760	hgsc.bcm.edu	36	20	5107548	5107548	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003818	exon5	c.T475G	p.L159V	.	.	.
SYCP2	10388	hgsc.bcm.edu	36	20	57922584	57922584	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014258	exon10	c.G752T	p.R251I	.	.	.
MCM8	84515	hgsc.bcm.edu	36	20	5896530	5896530	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_182802	exon10	c.C1034T	p.S345F	.	.	.
BTG3	10950	hgsc.bcm.edu	36	21	17903285	17903285	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006806	exon2	c.C49T	p.R17X	.	.	.
PRSS7	5651	hgsc.bcm.edu	36	21	18564282	18564282	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002772	exon25	c.G2935T	p.E979X	.	.	.
SFRS15	57466	hgsc.bcm.edu	36	21	31996551	31996551	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001145445	exon5	c.C334T	p.R112C	.	.	.
SYNJ1	8867	hgsc.bcm.edu	36	21	32967647	32967647	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_203446	exon14	c.C1717T	p.R573X	.	.	.
IL10RB	3588	hgsc.bcm.edu	36	21	33577344	33577344	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000628	exon5	c.C574T	p.R192X	.	.	.
IL10RB	3588	hgsc.bcm.edu	36	21	33590361	33590361	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000628	exon7	c.T807G	p.F269L	.	.	.
C2CD2	25966	hgsc.bcm.edu	36	21	42194843	42194843	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_199050	exon11	c.C1052T	p.S351L	.	.	.
ZNF70	7621	hgsc.bcm.edu	36	22	22416597	22416597	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_021916	exon2	c.G731T	p.R244I	.	.	.
SEC14L3	266629	hgsc.bcm.edu	36	22	29186116	29186116	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_174975	exon12	c.C1095T	p.F365F	.	.	.
GRAP2	9402	hgsc.bcm.edu	36	22	38686041	38686041	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004810	exon4	c.G207T	p.E69D	.	.	.
EP300	2033	hgsc.bcm.edu	36	22	39863682	39863682	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001429	exon8	c.C1702T	p.R568W	.	.	.
CPT1B	1375	hgsc.bcm.edu	36	22	49361374	49361374	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001145136	exon7	c.C733T	p.R245X	.	.	.
IL1RL2	8808	hgsc.bcm.edu	36	2	102172124	102172124	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003854	exon3	c.G215T	p.R72I	.	.	.
GPR45	11250	hgsc.bcm.edu	36	2	105225697	105225697	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_007227	exon1	c.C950A	p.S317Y	.	.	.
SULT1C4	27233	hgsc.bcm.edu	36	2	108364734	108364734	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006588	exon2	c.G254A	p.R85Q	.	.	.
MALL	7851	hgsc.bcm.edu	36	2	110206625	110206625	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005434	exon2	c.C117T	p.F39F	.	.	.
ACOXL	55289	hgsc.bcm.edu	36	2	111273124	111273124	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001142807	exon7	c.G523A	p.A175T	.	.	.
PQLC3	130814	hgsc.bcm.edu	36	2	11232579	11232579	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152391	exon6	c.T510C	p.D170D	.	.	.
CKAP2L	150468	hgsc.bcm.edu	36	2	113214929	113214929	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152515	exon8	c.G1949A	p.R650Q	.	.	.
MARCO	8685	hgsc.bcm.edu	36	2	119455672	119455672	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006770	exon10	c.G871T	p.A291S	.	.	.
TRIB2	28951	hgsc.bcm.edu	36	2	12798333	12798333	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_021643	exon3	c.G994A	p.V332I	.	.	.
CCNT2	905	hgsc.bcm.edu	36	2	135428643	135428643	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_058241	exon9	c.C2148T	p.F716F	.	.	.
YSK4	80122	hgsc.bcm.edu	36	2	135461969	135461969	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_025052	exon7	c.G943T	p.E315X	.	.	.
LCT	3938	hgsc.bcm.edu	36	2	136286387	136286387	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002299	exon7	c.G2317A	p.D773N	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	140852261	140852261	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018557	exon68	c.T10596G	p.F3532L	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	140916583	140916583	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018557	exon66	c.G10374T	p.E3458D	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	140931643	140931643	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018557	exon61	c.G9673T	p.D3225Y	.	.	.
KYNU	8942	hgsc.bcm.edu	36	2	143516208	143516208	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001199241	exon15	c.T1395A	p.N465K	.	.	.
CCDC148	130940	hgsc.bcm.edu	36	2	158923237	158923237	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_138803	exon2	c.G117T	p.K39N	.	.	.
PLA2R1	22925	hgsc.bcm.edu	36	2	160511671	160511671	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001195641	exon27	c.C3854A	p.S1285Y	.	.	.
LRP2	4036	hgsc.bcm.edu	36	2	169717629	169717629	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004525	exon67	c.T12387C	p.N4129N	.	.	.
LRP2	4036	hgsc.bcm.edu	36	2	169752927	169752927	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004525	exon49	c.C9127T	p.R3043C	.	.	.
LRP2	4036	hgsc.bcm.edu	36	2	169812190	169812190	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004525	exon20	c.G2852A	p.R951Q	.	.	.
ITGA6	3655	hgsc.bcm.edu	36	2	173057825	173057825	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000210	exon12	c.G1619A	p.R540Q	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179324556	179324556	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_133379	exon46	c.T10816G	p.Y3606D	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179339479	179339479	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_133432	exon40	c.C9439T	p.R3147X	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179349438	179349438	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_133432	exon27	c.C5260A	p.L1754I	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179368180	179368180	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_133432	exon7	c.C959A	p.S320Y	.	.	.
COL5A2	1290	hgsc.bcm.edu	36	2	189607085	189607085	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000393	exon54	c.G4456A	p.D1486N	.	.	.
ICA1L	130026	hgsc.bcm.edu	36	2	203401925	203401925	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_178231	exon4	c.G53T	p.R18I	.	.	.
GPR1	2825	hgsc.bcm.edu	36	2	206749737	206749737	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005279	exon3	c.C480A	p.F160L	.	.	.
IDH1	3417	hgsc.bcm.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005896	exon4	c.C394T	p.R132C	 IDH1,large_intestine,NS,Substitution - Missense,0 	.	.
PIKFYVE	200576	hgsc.bcm.edu	36	2	208908864	208908864	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015040	exon26	c.G4359T	p.Q1453H	.	.	.
APOB	338	hgsc.bcm.edu	36	2	21083435	21083435	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000384	exon26	c.C9810T	p.F3270F	.	.	.
APOB	338	hgsc.bcm.edu	36	2	21089602	21089602	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000384	exon25	c.G4151A	p.S1384N	.	.	.
ABCA12	26154	hgsc.bcm.edu	36	2	215523885	215523885	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_173076	exon45	c.C6815A	p.A2272D	.	.	.
ABCA12	26154	hgsc.bcm.edu	36	2	215526975	215526975	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_173076	exon44	c.C6495T	p.V2165V	.	.	.
SMARCAL1	50485	hgsc.bcm.edu	36	2	217040995	217040995	+	Missense_Mutation	SNP	C	C	T	rs2271336	byHapMap	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001127207	exon14	c.C2225T	p.T742M	.	.	.
CCDC108	255101	hgsc.bcm.edu	36	2	219601187	219601187	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_194302	exon12	c.G1831A	p.A611T	.	.	.
EPHA4	2043	hgsc.bcm.edu	36	2	222003088	222003088	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004438	exon15	c.C2524T	p.R842W	.	.	.
FARSB	10056	hgsc.bcm.edu	36	2	223197402	223197402	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005687	exon12	c.T1003C	p.Y335H	.	.	.
WDR69	164781	hgsc.bcm.edu	36	2	228494379	228494379	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_178821	exon12	c.G1071A	p.G357G	.	.	.
PSMD1	5707	hgsc.bcm.edu	36	2	231738861	231738861	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001191037	exon22	c.G2508T	p.K836N	.	.	.
ARMC9	80210	hgsc.bcm.edu	36	2	231789739	231789739	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_025139	exon5	c.G493T	p.E165X	.	.	.
COPS8	10920	hgsc.bcm.edu	36	2	237663284	237663284	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006710	exon4	c.G239T	p.R80I	.	.	.
COL6A3	1293	hgsc.bcm.edu	36	2	237918196	237918196	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_057167	exon35	c.G6586T	p.E2196X	.	.	.
KHK	3795	hgsc.bcm.edu	36	2	27173984	27173984	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000221	exon5	c.G527A	p.R176Q	.	.	.
C2orf53	339779	hgsc.bcm.edu	36	2	27214483	27214483	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_178553	exon3	c.C219T	p.F73F	.	.	.
DNAJC5G	285126	hgsc.bcm.edu	36	2	27356576	27356576	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_173650	exon6	c.G559T	p.D187Y	.	.	.
SNX17	9784	hgsc.bcm.edu	36	2	27453057	27453057	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014748	exon15	c.C1380T	p.F460F	.	.	.
PLB1	151056	hgsc.bcm.edu	36	2	28677206	28677206	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001170585	exon35	c.T2468G	p.L823R	.	.	.
CLIP4	79745	hgsc.bcm.edu	36	2	29258093	29258093	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_024692	exon16	c.T1948C	p.S650P	.	.	.
STRN	6801	hgsc.bcm.edu	36	2	36931663	36931663	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003162	exon16	c.C2070A	p.F690L	.	.	.
CEBPZ	10153	hgsc.bcm.edu	36	2	37309262	37309262	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005760	exon2	c.C578A	p.S193Y	.	.	.
DHX57	90957	hgsc.bcm.edu	36	2	38942159	38942159	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_198963	exon5	c.G897T	p.E299D	.	.	.
SLC8A1	6546	hgsc.bcm.edu	36	2	40220267	40220267	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001112801	exon7	c.G2284A	p.D762N	.	.	.
RTN4	57142	hgsc.bcm.edu	36	2	55105789	55105789	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_207521	exon3	c.G2332A	p.D778N	.	.	.
CCDC88A	55704	hgsc.bcm.edu	36	2	55382668	55382668	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018084	exon26	c.A4432G	p.T1478A	.	.	.
CCDC88A	55704	hgsc.bcm.edu	36	2	55426833	55426833	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018084	exon10	c.T1023G	p.F341L	.	.	.
OTX1	5013	hgsc.bcm.edu	36	2	63136888	63136888	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001199770	exon5	c.T998A	p.L333H	.	.	.
PLEK	5341	hgsc.bcm.edu	36	2	68467152	68467152	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002664	exon5	c.G487T	p.D163Y	.	.	.
GKN2	200504	hgsc.bcm.edu	36	2	69026991	69026991	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_182536	exon5	c.A421C	p.K141Q	.	.	.
DYSF	8291	hgsc.bcm.edu	36	2	71694013	71694013	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001130981	exon40	c.G4426A	p.D1476N	.	.	.
TEKT4	150483	hgsc.bcm.edu	36	2	94906090	94906090	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_144705	exon6	c.C1157G	p.A386G	.	.	.
ACTR1B	10120	hgsc.bcm.edu	36	2	97643480	97643480	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005735	exon3	c.G175T	p.G59X	.	.	.
PTPRN	5798	hgsc.bcm.edu	36	2	219876798	219876798	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	.	.	.	.	.	.	.
CCDC52	152185	hgsc.bcm.edu	36	3	114658761	114658761	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_144718	exon13	c.G1569T	p.K523N	.	.	.
DRD3	1814	hgsc.bcm.edu	36	3	115332766	115332766	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000796	exon6	c.C895T	p.R299X	.	.	.
GOLGB1	2804	hgsc.bcm.edu	36	3	122930869	122930869	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004487	exon4	c.A258C	p.R86S	.	.	.
SLC15A2	6565	hgsc.bcm.edu	36	3	123133217	123133217	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001145998	exon18	c.C1613A	p.S538Y	.	.	.
CCDC37	348807	hgsc.bcm.edu	36	3	127620038	127620038	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_182628	exon6	c.C466T	p.R156W	.	.	.
TMCC1	23023	hgsc.bcm.edu	36	3	130872245	130872245	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001017395	exon4	c.C1129T	p.R377W	.	.	.
PIK3R4	30849	hgsc.bcm.edu	36	3	131931918	131931918	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014602	exon5	c.A1509C	p.K503N	.	.	.
NPHP3	27031	hgsc.bcm.edu	36	3	133886165	133886165	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_153240	exon24	c.C3493T	p.R1165W	.	.	.
SLCO2A1	6578	hgsc.bcm.edu	36	3	135150212	135150212	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005630	exon8	c.G963A	p.R321R	.	.	.
CEP63	80254	hgsc.bcm.edu	36	3	135733457	135733457	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_025180	exon5	c.G303T	p.K101N	.	.	.
SOX14	8403	hgsc.bcm.edu	36	3	138967014	138967014	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004189	exon1	c.C698T	p.S233L	.	.	.
SLC9A9	285195	hgsc.bcm.edu	36	3	144894787	144894787	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_173653	exon5	c.A586C	p.N196H	.	.	.
WWTR1	25937	hgsc.bcm.edu	36	3	150742841	150742841	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015472	exon4	c.C742T	p.R248X	.	.	.
C3orf44	131831	hgsc.bcm.edu	36	3	151880955	151880955	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152394	exon9	c.C1101A	p.F367L	.	.	.
GPR87	53836	hgsc.bcm.edu	36	3	152494835	152494835	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_023915	exon3	c.G889T	p.E297X	.	.	.
MED12L	116931	hgsc.bcm.edu	36	3	152576558	152576558	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_053002	exon26	c.G3814T	p.E1272X	.	.	.
BTD	686	hgsc.bcm.edu	36	3	15651937	15651937	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000060	exon2	c.T47G	p.F16C	.	.	.
VEPH1	79674	hgsc.bcm.edu	36	3	158564819	158564819	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001167912	exon8	c.C1304A	p.S435Y	.	.	.
GFM1	85476	hgsc.bcm.edu	36	3	159890672	159890672	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_024996	exon16	c.C1936A	p.L646I	.	.	.
SI	6476	hgsc.bcm.edu	36	3	166220198	166220198	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001041	exon28	c.G3309A	p.S1103S	.	.	.
SLITRK3	22865	hgsc.bcm.edu	36	3	166389485	166389485	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014926	exon2	c.C1828A	p.L610I	.	.	.
PRKCI	5584	hgsc.bcm.edu	36	3	171496413	171496413	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002740	exon15	c.C1438T	p.R480C	.	.	.
MCCC1	56922	hgsc.bcm.edu	36	3	184217788	184217788	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020166	exon18	c.C2009T	p.A670V	.	.	.
EIF4G1	1981	hgsc.bcm.edu	36	3	185521121	185521121	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_182917	exon7	c.C547T	p.R183X	.	.	.
DGKG	1608	hgsc.bcm.edu	36	3	187489276	187489276	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001346	exon6	c.C461T	p.S154L	.	.	.
RNF168	165918	hgsc.bcm.edu	36	3	197683539	197683539	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152617	exon6	c.G1264T	p.E422X	.	.	.
CNTN4	152330	hgsc.bcm.edu	36	3	3070582	3070582	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_175613	exon15	c.A1919G	p.Y640C	.	.	.
SCN10A	6336	hgsc.bcm.edu	36	3	38780011	38780011	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006514	exon5	c.C680A	p.S227Y	.	.	.
SCN11A	11280	hgsc.bcm.edu	36	3	38883816	38883816	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014139	exon23	c.G3951T	p.K1317N	.	.	.
XIRP1	165904	hgsc.bcm.edu	36	3	39200983	39200983	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_194293	exon2	c.A4958G	p.Y1653C	.	.	.
CCR8	1237	hgsc.bcm.edu	36	3	39349702	39349702	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005201	exon2	c.C876A	p.H292Q	.	.	.
HHATL	57467	hgsc.bcm.edu	36	3	42714811	42714811	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020707	exon6	c.G520A	p.V174M	.	.	.
SUMF1	285362	hgsc.bcm.edu	36	3	4378914	4378914	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001164675	exon8	c.G979A	p.A327T	.	.	.
ZNF660	285349	hgsc.bcm.edu	36	3	44611402	44611402	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_173658	exon3	c.G713T	p.R238I	.	.	.
CCR9	10803	hgsc.bcm.edu	36	3	45917383	45917383	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006641	exon2	c.C63A	p.F21L	.	.	.
CCR5	1234	hgsc.bcm.edu	36	3	46390061	46390061	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001100168	exon3	c.C664T	p.L222F	.	.	.
DALRD3	55152	hgsc.bcm.edu	36	3	49030176	49030176	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018114	exon3	c.G91T	p.E31X	.	.	.
USP4	7375	hgsc.bcm.edu	36	3	49298733	49298733	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_199443	exon15	c.G1861A	p.E621K	.	.	.
USP4	7375	hgsc.bcm.edu	36	3	49324079	49324079	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003363	exon7	c.G708A	p.A236A	.	.	.
RBM6	10180	hgsc.bcm.edu	36	3	50072095	50072095	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001167582	exon7	c.C574T	p.R192C	.	.	.
PBRM1	55193	hgsc.bcm.edu	36	3	52688674	52688674	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018165	exon1	c.A94C	p.S32R	.	.	.
NEK4	6787	hgsc.bcm.edu	36	3	52777635	52777635	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003157	exon2	c.G119A	p.R40Q	.	.	.
ITIH1	3697	hgsc.bcm.edu	36	3	52794216	52794216	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001166434	exon10	c.G1098T	p.E366D	.	.	.
ITIH1	3697	hgsc.bcm.edu	36	3	52795360	52795360	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001166434	exon11	c.G1177T	p.E393X	.	.	.
TKT	7086	hgsc.bcm.edu	36	3	53238390	53238390	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001135055	exon9	c.G1210A	p.A404T	.	.	.
CACNA1D	776	hgsc.bcm.edu	36	3	53758359	53758359	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001128840	exon27	c.G3339A	p.S1113S	.	.	.
C3orf63	23272	hgsc.bcm.edu	36	3	56642543	56642543	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015224	exon11	c.G2005A	p.D669N	.	.	.
C3orf63	23272	hgsc.bcm.edu	36	3	56655726	56655726	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015224	exon7	c.G891A	p.K297K	.	.	.
C3orf63	23272	hgsc.bcm.edu	36	3	56655944	56655944	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015224	exon7	c.G673T	p.E225X	.	.	.
PXK	54899	hgsc.bcm.edu	36	3	58364638	58364638	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017771	exon13	c.C1191T	p.S397S	.	.	.
CADM2	253559	hgsc.bcm.edu	36	3	86093427	86093427	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001167675	exon8	c.C910T	p.R304X	.	.	.
ZNF518B	85460	hgsc.bcm.edu	36	4	10054867	10054867	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_053042	exon3	c.G2184A	p.P728P	.	.	.
ADH7	131	hgsc.bcm.edu	36	4	100560922	100560922	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001166504	exon6	c.T676C	p.S226P	.	.	.
MANBA	4126	hgsc.bcm.edu	36	4	103776166	103776166	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005908	exon15	c.C2061A	p.F687L	.	.	.
UGT8	7368	hgsc.bcm.edu	36	4	115763789	115763789	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001128174	exon2	c.G304A	p.E102K	.	.	.
UGT8	7368	hgsc.bcm.edu	36	4	115816557	115816557	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001128174	exon6	c.G1290A	p.S430S	.	.	.
MYOZ2	51778	hgsc.bcm.edu	36	4	120326759	120326759	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_016599	exon6	c.G751A	p.E251K	.	.	.
TRPC3	7222	hgsc.bcm.edu	36	4	123065802	123065802	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001130698	exon3	c.C997T	p.R333W	.	.	.
BBS12	166379	hgsc.bcm.edu	36	4	123883999	123883999	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152618	exon2	c.C1502T	p.T501M	.	.	.
HSPA4L	22824	hgsc.bcm.edu	36	4	128945729	128945729	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014278	exon9	c.G1037A	p.R346Q	.	.	.
SMAD1	4086	hgsc.bcm.edu	36	4	146694391	146694391	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005900	exon6	c.C1003A	p.H335N	.	.	.
POU4F2	5458	hgsc.bcm.edu	36	4	147780653	147780653	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004575	exon2	c.C473T	p.S158L	.	.	.
PRMT10	90826	hgsc.bcm.edu	36	4	148794651	148794651	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_138364	exon9	c.G1847A	p.R616H	.	.	.
LRBA	987	hgsc.bcm.edu	36	4	152011167	152011167	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001199282	exon20	c.G2409A	p.Q803Q	.	.	.
LRBA	987	hgsc.bcm.edu	36	4	152054899	152054899	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001199282	exon9	c.T1059C	p.A353A	.	.	.
DCHS2	54798	hgsc.bcm.edu	36	4	155377442	155377442	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017639	exon25	c.C6447A	p.F2149L	.	.	.
FGG	2266	hgsc.bcm.edu	36	4	155749155	155749155	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000509	exon7	c.G764A	p.G255E	.	.	.
GLRB	2743	hgsc.bcm.edu	36	4	158311060	158311060	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001166060	exon10	c.T1224G	p.V408V	.	.	.
NPY5R	4889	hgsc.bcm.edu	36	4	164491529	164491529	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006174	exon4	c.T654C	p.V218V	.	.	.
ANXA10	11199	hgsc.bcm.edu	36	4	169339420	169339420	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_007193	exon10	c.C736T	p.R246X	.	.	.
GALNTL6	442117	hgsc.bcm.edu	36	4	174040626	174040626	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001034845	exon8	c.C1034A	p.S345Y	.	.	.
GLRA3	8001	hgsc.bcm.edu	36	4	175886296	175886296	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001042543	exon4	c.C396A	p.F132L	.	.	.
GLRA3	8001	hgsc.bcm.edu	36	4	175886400	175886400	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001042543	exon4	c.C292T	p.R98C	.	.	.
WDR17	116966	hgsc.bcm.edu	36	4	177289789	177289789	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_170710	exon8	c.C1076A	p.S359Y	.	.	.
CDKN2AIP	55602	hgsc.bcm.edu	36	4	184605387	184605387	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017632	exon3	c.G1556A	p.S519N	.	.	.
STIM2	57620	hgsc.bcm.edu	36	4	26628656	26628656	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001169117	exon11	c.G1715A	p.R572Q	.	.	.
TLR10	81793	hgsc.bcm.edu	36	4	38451702	38451702	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001017388	exon2	c.C1905T	p.H635H	.	.	.
RHOH	399	hgsc.bcm.edu	36	4	39921515	39921515	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004310	exon3	c.C114T	p.Y38Y	.	.	.
CORIN	10699	hgsc.bcm.edu	36	4	47341856	47341856	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006587	exon14	c.C1956T	p.C652C	.	.	.
KDR	3791	hgsc.bcm.edu	36	4	55650977	55650977	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002253	exon23	c.G3095A	p.R1032Q	.	.	.
EVC2	132884	hgsc.bcm.edu	36	4	5668053	5668053	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_147127	exon16	c.A2826C	p.E942D	.	.	.
EVC2	132884	hgsc.bcm.edu	36	4	5675412	5675412	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_147127	exon14	c.C2254T	p.R752W	.	.	.
EVC2	132884	hgsc.bcm.edu	36	4	5741809	5741809	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_147127	exon5	c.G682A	p.A228T	.	.	.
EVC2	132884	hgsc.bcm.edu	36	4	5741875	5741875	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_147127	exon5	c.C616T	p.L206L	.	.	.
C4orf35	85438	hgsc.bcm.edu	36	4	71236066	71236066	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_033122	exon1	c.G721A	p.E241K	.	.	.
ADAMTS3	9508	hgsc.bcm.edu	36	4	73398325	73398325	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014243	exon12	c.T1678G	p.F560V	.	.	.
CXCL9	4283	hgsc.bcm.edu	36	4	77143853	77143853	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002416	exon4	c.G300T	p.K100N	.	.	.
GK2	2712	hgsc.bcm.edu	36	4	80548076	80548076	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_033214	exon1	c.C303A	p.D101E	.	.	.
BMP3	651	hgsc.bcm.edu	36	4	82186214	82186214	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001201	exon2	c.C615A	p.L205L	.	.	.
CDS1	1040	hgsc.bcm.edu	36	4	85774037	85774037	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001263	exon7	c.G643A	p.A215T	.	.	.
IBSP	3381	hgsc.bcm.edu	36	4	88950784	88950784	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004967	exon6	c.G249T	p.E83D	.	.	.
MEPE	56955	hgsc.bcm.edu	36	4	88986444	88986444	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001184696	exon5	c.G1061A	p.R354K	.	.	.
PKD2	5311	hgsc.bcm.edu	36	4	89198258	89198258	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000297	exon9	c.C1998A	p.F666L	.	.	.
HERC5	51191	hgsc.bcm.edu	36	4	89612658	89612658	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_016323	exon11	c.G1374T	p.K458N	.	.	.
TSPAN5	10098	hgsc.bcm.edu	36	4	99622254	99622254	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005723	exon4	c.C375A	p.F125L	.	.	.
FBXL17	64839	hgsc.bcm.edu	36	5	107225333	107225333	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001163315	exon9	c.C2093T	p.A698V	.	.	.
APC	324	hgsc.bcm.edu	36	5	112190790	112190790	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000038	exon12	c.C1495T	p.R499X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
APC	324	hgsc.bcm.edu	36	5	112198721	112198721	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000038	exon15	c.C1918T	p.R640W	.	.	.
APC	324	hgsc.bcm.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000038	exon16	c.C4348T	p.R1450X	 APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.
APC	324	hgsc.bcm.edu	36	5	112206122	112206122	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000038	exon16	c.G6932T	p.R2311I	.	.	.
APC	324	hgsc.bcm.edu	36	5	112206203	112206203	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000038	exon16	c.C7013A	p.P2338H	.	.	.
APC	324	hgsc.bcm.edu	36	5	112206581	112206581	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000038	exon16	c.C7391A	p.S2464Y	.	.	.
LVRN	206338	hgsc.bcm.edu	36	5	115363444	115363444	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_173800	exon7	c.A1461C	p.E487D	.	.	.
ZNF474	133923	hgsc.bcm.edu	36	5	121516164	121516164	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_207317	exon2	c.C580T	p.P194S	.	.	.
FBN2	2201	hgsc.bcm.edu	36	5	127638159	127638159	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001999	exon60	c.C7710T	p.I2570I	.	.	.
IL4	3565	hgsc.bcm.edu	36	5	132046111	132046111	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_172348	exon3	c.C347T	p.T116M	.	.	.
KIF3A	11127	hgsc.bcm.edu	36	5	132062801	132062801	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_007054	exon16	c.G2012A	p.R671Q	.	.	.
KIF3A	11127	hgsc.bcm.edu	36	5	132066185	132066185	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_007054	exon12	c.G1641T	p.K547N	.	.	.
AFF4	27125	hgsc.bcm.edu	36	5	132244773	132244773	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014423	exon21	c.C3369A	p.F1123L	.	.	.
MYOT	9499	hgsc.bcm.edu	36	5	137250531	137250531	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006790	exon9	c.T1270G	p.S424A	.	.	.
BRD8	10902	hgsc.bcm.edu	36	5	137514491	137514491	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_139199	exon22	c.G2962A	p.E988K	.	.	.
KDM3B	51780	hgsc.bcm.edu	36	5	137793860	137793860	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_016604	exon22	c.G4917T	p.E1639D	.	.	.
DNAH5	1767	hgsc.bcm.edu	36	5	13845236	13845236	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001369	exon50	c.G8315A	p.R2772Q	.	.	.
DNAH5	1767	hgsc.bcm.edu	36	5	13862274	13862274	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001369	exon46	c.C7631T	p.T2544M	.	.	.
DNAH5	1767	hgsc.bcm.edu	36	5	13894165	13894165	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001369	exon34	c.A5559C	p.K1853N	.	.	.
PSD2	84249	hgsc.bcm.edu	36	5	139196631	139196631	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_032289	exon10	c.C1455T	p.F485F	.	.	.
PCDHB13	56123	hgsc.bcm.edu	36	5	140574809	140574809	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018933	exon1	c.C930T	p.F310F	.	.	.
FAT2	2196	hgsc.bcm.edu	36	5	150881806	150881806	+	Missense_Mutation	SNP	A	A	G	rs2053028	by2Hit2Allele;byCluster;byFrequency;byHapMap	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001447	exon18	c.T10541C	p.L3514S	.	.	.
FAT2	2196	hgsc.bcm.edu	36	5	150903332	150903332	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001447	exon9	c.G7549T	p.D2517Y	.	.	.
GRIA1	2890	hgsc.bcm.edu	36	5	152850722	152850722	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001114183	exon1	c.C81T	p.I27I	.	.	.
HMMR	3161	hgsc.bcm.edu	36	5	162832786	162832786	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001142556	exon8	c.T674G	p.I225S	.	.	.
RARS	5917	hgsc.bcm.edu	36	5	167870184	167870184	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002887	exon12	c.C1367T	p.S456L	.	.	.
DOCK2	1794	hgsc.bcm.edu	36	5	169396130	169396130	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004946	exon36	c.T3658C	p.Y1220H	.	.	.
NSD1	64324	hgsc.bcm.edu	36	5	176606318	176606318	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_172349	exon11	c.G3605A	p.R1202Q	.	.	.
CLK4	57396	hgsc.bcm.edu	36	5	177973244	177973244	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020666	exon7	c.G662A	p.R221Q	.	.	.
CDH12	1010	hgsc.bcm.edu	36	5	21787968	21787968	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004061	exon15	c.G2020A	p.D674N	.	.	.
CDH10	1008	hgsc.bcm.edu	36	5	24629338	24629338	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006727	exon2	c.T19G	p.L7V	.	.	.
UGT3A2	167127	hgsc.bcm.edu	36	5	36075455	36075455	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001168316	exon4	c.C854T	p.A285V	.	.	.
LIFR	3977	hgsc.bcm.edu	36	5	38532242	38532242	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002310	exon13	c.T1884G	p.N628K	.	.	.
LIFR	3977	hgsc.bcm.edu	36	5	38532439	38532439	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002310	exon13	c.G1687T	p.E563X	.	.	.
LIFR	3977	hgsc.bcm.edu	36	5	38563074	38563074	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002310	exon4	c.A337C	p.N113H	.	.	.
C6	729	hgsc.bcm.edu	36	5	41217352	41217352	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000065	exon7	c.G793T	p.E265X	.	.	.
MGC42105	167359	hgsc.bcm.edu	36	5	43281863	43281863	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_153361	exon2	c.C229T	p.R77X	.	.	.
PARP8	79668	hgsc.bcm.edu	36	5	50147029	50147029	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001178055	exon16	c.G1582A	p.V528I	.	.	.
MIER3	166968	hgsc.bcm.edu	36	5	56262281	56262281	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152622	exon9	c.G796A	p.E266K	.	.	.
SLC30A5	64924	hgsc.bcm.edu	36	5	68432450	68432450	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_024055	exon2	c.C144T	p.F48F	.	.	.
SLC30A5	64924	hgsc.bcm.edu	36	5	68459635	68459635	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_022902	exon15	c.C2047T	p.R683C	.	.	.
ADCY2	108	hgsc.bcm.edu	36	5	7573997	7573997	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020546	exon3	c.G555T	p.E185D	.	.	.
IQGAP2	10788	hgsc.bcm.edu	36	5	76029678	76029678	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006633	exon33	c.C4317T	p.I1439I	.	.	.
CRHBP	1393	hgsc.bcm.edu	36	5	76294954	76294954	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001882	exon6	c.G724A	p.D242N	.	.	.
ACOT12	134526	hgsc.bcm.edu	36	5	80675750	80675750	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_130767	exon9	c.G965A	p.R322Q	.	.	.
SSBP2	23635	hgsc.bcm.edu	36	5	80760254	80760254	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_012446	exon16	c.C962T	p.S321F	.	.	.
ATP6AP1L	92270	hgsc.bcm.edu	36	5	81649770	81649770	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001017971	exon4	c.G570A	p.S190S	.	.	.
VCAN	1462	hgsc.bcm.edu	36	5	82871083	82871083	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001164097	exon7	c.G3544T	p.E1182X	.	.	.
TTC37	9652	hgsc.bcm.edu	36	5	94831355	94831355	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014639	exon41	c.G4381T	p.D1461Y	.	.	.
PCSK1	5122	hgsc.bcm.edu	36	5	95772395	95772395	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001177875	exon8	c.C793T	p.R265C	.	.	.
LIX1	167410	hgsc.bcm.edu	36	5	96468933	96468933	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_153234	exon3	c.C274T	p.R92W	.	.	.
CCNC	892	hgsc.bcm.edu	36	6	100116198	100116198	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005190	exon3	c.G220A	p.A74T	.	.	.
ASCC3	10973	hgsc.bcm.edu	36	6	101067457	101067457	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006828	exon40	c.C6134T	p.S2045L	.	.	.
POPDC3	64208	hgsc.bcm.edu	36	6	105713150	105713150	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_022361	exon4	c.G764T	p.R255I	.	.	.
AIM1	202	hgsc.bcm.edu	36	6	107115931	107115931	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001624	exon18	c.C4777T	p.R1593X	.	.	.
ROS1	6098	hgsc.bcm.edu	36	6	117747882	117747882	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002944	exon36	c.C5782T	p.L1928F	.	.	.
HEY2	23493	hgsc.bcm.edu	36	6	126122005	126122005	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_012259	exon5	c.C378T	p.F126F	.	.	.
RSPO3	84870	hgsc.bcm.edu	36	6	127558718	127558718	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_032784	exon5	c.C692T	p.A231V	.	.	.
PTPRK	5796	hgsc.bcm.edu	36	6	128361602	128361602	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001135648	exon16	c.C2635T	p.L879F	.	.	.
SAMD3	154075	hgsc.bcm.edu	36	6	130507585	130507585	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001017373	exon12	c.G1336A	p.E446K	.	.	.
ENPP3	5169	hgsc.bcm.edu	36	6	132048218	132048218	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005021	exon13	c.A1142G	p.N381S	.	.	.
MOXD1	26002	hgsc.bcm.edu	36	6	132735773	132735773	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015529	exon3	c.T468C	p.G156G	.	.	.
VNN1	8876	hgsc.bcm.edu	36	6	133055959	133055959	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004666	exon4	c.T723G	p.V241V	.	.	.
SLC2A12	154091	hgsc.bcm.edu	36	6	134391934	134391934	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_145176	exon2	c.G722A	p.R241K	.	.	.
MAP7	9053	hgsc.bcm.edu	36	6	136751265	136751265	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001198619	exon5	c.G47A	p.W16X	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152828883	152828883	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_182961	exon17	c.C1656A	p.F552L	.	.	.
FBXO5	26271	hgsc.bcm.edu	36	6	153335212	153335212	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_012177	exon4	c.C980T	p.S327F	.	.	.
RGS17	26575	hgsc.bcm.edu	36	6	153374484	153374484	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_012419	exon5	c.G551A	p.R184K	.	.	.
NOX3	50508	hgsc.bcm.edu	36	6	155793712	155793712	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015718	exon8	c.T848G	p.I283R	.	.	.
SYNJ2	8871	hgsc.bcm.edu	36	6	158358252	158358252	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003898	exon2	c.A156G	p.G52G	.	.	.
T	6862	hgsc.bcm.edu	36	6	166500271	166500271	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003181	exon3	c.C270A	p.F90L	.	.	.
THBS2	7058	hgsc.bcm.edu	36	6	169368287	169368287	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003247	exon17	c.C2451T	p.Y817Y	.	.	.
C6orf70	55780	hgsc.bcm.edu	36	6	169898807	169898807	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018341	exon5	c.C485A	p.A162D	.	.	.
NUP153	9972	hgsc.bcm.edu	36	6	17777537	17777537	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005124	exon7	c.G980T	p.R327I	.	.	.
BTN3A1	11119	hgsc.bcm.edu	36	6	26515942	26515942	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001145009	exon4	c.C498A	p.C166X	.	.	.
TMEM217	221468	hgsc.bcm.edu	36	6	37294231	37294231	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001162900	exon2	c.C554T	p.S185L	.	.	.
TREM1	54210	hgsc.bcm.edu	36	6	41358292	41358292	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018643	exon2	c.G225T	p.K75N	.	.	.
PPP2R5D	5528	hgsc.bcm.edu	36	6	43084089	43084089	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006245	exon9	c.C924A	p.I308I	.	.	.
C6orf153	88745	hgsc.bcm.edu	36	6	43104943	43104943	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_033112	exon7	c.A779G	p.X260X	.	.	.
ZNF318	24149	hgsc.bcm.edu	36	6	43415281	43415281	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014345	exon10	c.C4433A	p.S1478X	.	.	.
AARS2	57505	hgsc.bcm.edu	36	6	44382708	44382708	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_020745	exon7	c.T1079G	p.F360C	.	.	.
CDC5L	988	hgsc.bcm.edu	36	6	44469228	44469228	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001253	exon4	c.G379T	p.E127X	.	.	.
TDRD6	221400	hgsc.bcm.edu	36	6	46768446	46768446	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001010870	exon1	c.C4622T	p.T1541M	.	.	.
PLA2G7	7941	hgsc.bcm.edu	36	6	46783739	46783739	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005084	exon10	c.A988C	p.K330Q	.	.	.
PLA2G7	7941	hgsc.bcm.edu	36	6	46798560	46798560	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005084	exon2	c.T28G	p.F10V	.	.	.
GPR116	221395	hgsc.bcm.edu	36	6	46982442	46982442	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001098518	exon2	c.G17T	p.R6I	.	.	.
FAM83B	222584	hgsc.bcm.edu	36	6	54843009	54843009	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001010872	exon2	c.G6T	p.E2D	.	.	.
BAI3	577	hgsc.bcm.edu	36	6	69405301	69405301	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001704	exon3	c.C13T	p.R5C	.	.	.
BAI3	577	hgsc.bcm.edu	36	6	70091558	70091558	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001704	exon21	c.C2888T	p.A963V	.	.	.
BAI3	577	hgsc.bcm.edu	36	6	70128085	70128085	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001704	exon29	c.G4199T	p.R1400I	.	.	.
COL19A1	1310	hgsc.bcm.edu	36	6	70665571	70665571	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001858	exon3	c.C102T	p.C34C	.	.	.
OGFRL1	79627	hgsc.bcm.edu	36	6	72059973	72059973	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_024576	exon3	c.G338A	p.R113Q	.	.	.
SLC17A5	26503	hgsc.bcm.edu	36	6	74361590	74361590	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_012434	exon11	c.C1419A	p.F473L	.	.	.
LCA5	167691	hgsc.bcm.edu	36	6	80258059	80258059	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001122769	exon6	c.G1063A	p.E355K	.	.	.
PRSS35	167681	hgsc.bcm.edu	36	6	84290773	84290773	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_153362	exon2	c.G894A	p.T298T	.	.	.
CYB5R4	51167	hgsc.bcm.edu	36	6	84691007	84691007	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_016230	exon10	c.C791A	p.S264X	.	.	.
MDN1	23195	hgsc.bcm.edu	36	6	90528133	90528133	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014611	exon17	c.A2412C	p.Q804H	.	.	.
MDN1	23195	hgsc.bcm.edu	36	6	90561116	90561116	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014611	exon3	c.C455T	p.A152V	.	.	.
GJA10	84694	hgsc.bcm.edu	36	6	90661694	90661694	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_032602	exon1	c.G786T	p.K262N	.	.	.
EPHA7	2045	hgsc.bcm.edu	36	6	94024621	94024621	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004440	exon11	c.G2027T	p.R676M	.	.	.
LAMA4	3910	hgsc.bcm.edu	36	6	112615344	112615344	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	.	.	.	.	.	.	.
HLA-B	3106	hgsc.bcm.edu	36	6	31431072	31431072	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	.	.	.	.	.	.	.
RELN	5649	hgsc.bcm.edu	36	7	102972828	102972828	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005045	exon42	c.T6502G	p.F2168V	.	.	.
SLC26A4	5172	hgsc.bcm.edu	36	7	107122161	107122161	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000441	exon11	c.G1341A	p.K447K	.	.	.
LAMB4	22798	hgsc.bcm.edu	36	7	107465250	107465250	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_007356	exon30	c.G4498A	p.E1500K	.	.	.
LAMB4	22798	hgsc.bcm.edu	36	7	107493554	107493554	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_007356	exon21	c.C2725T	p.R909C	.	.	.
THAP5	168451	hgsc.bcm.edu	36	7	107992199	107992199	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_182529	exon3	c.C734A	p.S245Y	.	.	.
PTPRZ1	5803	hgsc.bcm.edu	36	7	121470011	121470011	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002851	exon22	c.G5915T	p.R1972I	.	.	.
GPR37	2861	hgsc.bcm.edu	36	7	124173938	124173938	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005302	exon2	c.G1719A	p.Q573Q	.	.	.
POT1	25913	hgsc.bcm.edu	36	7	124270104	124270104	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001042594	exon12	c.C763A	p.H255N	.	.	.
SND1	27044	hgsc.bcm.edu	36	7	127122153	127122153	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014390	exon3	c.G264T	p.K88N	.	.	.
FAM71F1	84691	hgsc.bcm.edu	36	7	128146146	128146146	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_032599	exon3	c.C460T	p.L154F	.	.	.
OPN1SW	611	hgsc.bcm.edu	36	7	128201868	128201868	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001708	exon3	c.T607C	p.F203L	.	.	.
FAM40B	57464	hgsc.bcm.edu	36	7	128910033	128910033	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001134336	exon20	c.C2164T	p.R722C	.	.	.
LRGUK	136332	hgsc.bcm.edu	36	7	133532296	133532296	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_144648	exon13	c.C1444A	p.L482I	.	.	.
SSBP1	6742	hgsc.bcm.edu	36	7	141091770	141091770	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003143	exon6	c.G320A	p.R107Q	.	.	.
PDIA4	9601	hgsc.bcm.edu	36	7	148332047	148332047	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004911	exon10	c.G1710T	p.K570N	.	.	.
GIMAP5	55340	hgsc.bcm.edu	36	7	150071078	150071078	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001199577	exon6	c.C1530A	p.Y510X	.	.	.
IL6	3569	hgsc.bcm.edu	36	7	22733755	22733755	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000600	exon2	c.G187A	p.G63S	.	.	.
NPVF	64111	hgsc.bcm.edu	36	7	25231307	25231307	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_022150	exon3	c.T550G	p.F184V	.	.	.
TAX1BP1	8887	hgsc.bcm.edu	36	7	27798272	27798272	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001079864	exon9	c.G1161A	p.T387T	.	.	.
GGCT	79017	hgsc.bcm.edu	36	7	30506686	30506686	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001199815	exon2	c.C278A	p.S93Y	.	.	.
ANLN	54443	hgsc.bcm.edu	36	7	36402432	36402432	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018685	exon2	c.G51T	p.E17D	.	.	.
AMPH	273	hgsc.bcm.edu	36	7	38400257	38400257	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_139316	exon17	c.C1355T	p.A452V	.	.	.
VPS41	27072	hgsc.bcm.edu	36	7	38771770	38771770	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_080631	exon15	c.C1189A	p.L397I	.	.	.
BLVRA	644	hgsc.bcm.edu	36	7	43794146	43794146	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000712	exon3	c.C131T	p.S44L	.	.	.
HGF	3082	hgsc.bcm.edu	36	7	81224536	81224536	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001010934	exon4	c.C387A	p.I129I	.	.	.
CACNA2D1	781	hgsc.bcm.edu	36	7	81500058	81500058	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000722	exon12	c.A1134C	p.K378N	.	.	.
ABCB1	5243	hgsc.bcm.edu	36	7	87021132	87021132	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000927	exon10	c.A880G	p.T294A	.	.	.
AKAP9	10142	hgsc.bcm.edu	36	7	91469586	91469586	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_147185	exon8	c.G2419A	p.D807N	.	.	.
CALCR	799	hgsc.bcm.edu	36	7	92910876	92910876	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001164737	exon11	c.C880T	p.R294W	.	.	.
COL1A2	1278	hgsc.bcm.edu	36	7	93894514	93894514	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000089	exon48	c.C3238T	p.R1080X	.	.	.
DYNC1I1	1780	hgsc.bcm.edu	36	7	95272027	95272027	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004411	exon2	c.G50A	p.R17H	.	.	.
C7orf38	221786	hgsc.bcm.edu	36	7	98983076	98983076	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_145111	exon2	c.T891A	p.F297L	.	.	.
ADAM28	10863	hgsc.bcm.edu	36	8	24223417	24223418	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014265	exon3	c.216_217insA	p.L72fs	.	.	.
VPS13B	157680	hgsc.bcm.edu	36	8	100848280	100848280	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017890	exon40	c.G7228A	p.D2410N	.	.	.
RNF19A	25897	hgsc.bcm.edu	36	8	101340368	101340368	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_183419	exon10	c.G2109A	p.T703T	.	.	.
ANGPT1	284	hgsc.bcm.edu	36	8	108333296	108333296	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001146	exon9	c.G1460A	p.R487H	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	113312980	113312980	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_198124	exon70	c.G10678T	p.D3560Y	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	114255248	114255248	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_198124	exon5	c.C468T	p.V156V	.	.	.
RAD21	5885	hgsc.bcm.edu	36	8	117929060	117929060	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006265	exon14	c.C1756T	p.R586X	.	.	.
EXT1	2131	hgsc.bcm.edu	36	8	118916884	118916884	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000127	exon3	c.G1144A	p.D382N	.	.	.
EXT1	2131	hgsc.bcm.edu	36	8	119191549	119191549	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000127	exon1	c.G918T	p.K306N	.	.	.
ENPP2	5168	hgsc.bcm.edu	36	8	120675257	120675257	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001040092	exon12	c.G997A	p.D333N	.	.	.
TAF2	6873	hgsc.bcm.edu	36	8	120870227	120870227	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003184	exon13	c.G1667A	p.G556E	.	.	.
KCNQ3	3786	hgsc.bcm.edu	36	8	133261674	133261674	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004519	exon4	c.G689A	p.R230H	.	.	.
TMEM71	137835	hgsc.bcm.edu	36	8	133803480	133803480	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_144649	exon7	c.C683A	p.S228Y	.	.	.
TG	7038	hgsc.bcm.edu	36	8	133980319	133980319	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003235	exon14	c.C3312T	p.F1104F	.	.	.
COL22A1	169044	hgsc.bcm.edu	36	8	139806825	139806825	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152888	exon24	c.C2180T	p.P727L	.	.	.
COL22A1	169044	hgsc.bcm.edu	36	8	139902752	139902752	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152888	exon7	c.C1054T	p.R352X	.	.	.
PPP3CC	5533	hgsc.bcm.edu	36	8	22424546	22424546	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005605	exon5	c.C487T	p.R163X	.	.	.
ADAMDEC1	27299	hgsc.bcm.edu	36	8	24310881	24310881	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001145272	exon5	c.A357G	p.P119P	.	.	.
ADAM7	8756	hgsc.bcm.edu	36	8	24406610	24406610	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003817	exon16	c.G1820A	p.G607E	.	.	.
DOCK5	80005	hgsc.bcm.edu	36	8	25234413	25234413	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_024940	exon16	c.G1543A	p.V515I	.	.	.
ADRA1A	148	hgsc.bcm.edu	36	8	26778308	26778308	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_033304	exon1	c.C96A	p.I32I	.	.	.
ELP3	55140	hgsc.bcm.edu	36	8	28073797	28073797	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018091	exon13	c.G1390A	p.E464K	.	.	.
FUT10	84750	hgsc.bcm.edu	36	8	33430379	33430379	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_032664	exon3	c.G273A	p.T91T	.	.	.
BAG4	9530	hgsc.bcm.edu	36	8	38184197	38184197	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004874	exon3	c.C389A	p.S130Y	.	.	.
DDHD2	23259	hgsc.bcm.edu	36	8	38222950	38222950	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015214	exon9	c.C1100A	p.S367Y	.	.	.
WHSC1L1	54904	hgsc.bcm.edu	36	8	38306081	38306081	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_023034	exon6	c.T1553G	p.F518C	.	.	.
ANK1	286	hgsc.bcm.edu	36	8	41632418	41632418	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001142445	exon4	c.G456A	p.S152S	.	.	.
SNTG1	54212	hgsc.bcm.edu	36	8	51525820	51525820	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018967	exon8	c.G341A	p.R114K	.	.	.
RP1	6101	hgsc.bcm.edu	36	8	55705191	55705191	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006269	exon4	c.G6196A	p.D2066N	.	.	.
ARFGEF1	10565	hgsc.bcm.edu	36	8	68315034	68315034	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006421	exon20	c.G2896A	p.D966N	.	.	.
KCNB2	9312	hgsc.bcm.edu	36	8	73642887	73642887	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004770	exon2	c.G364T	p.E122X	.	.	.
KCNB2	9312	hgsc.bcm.edu	36	8	73643001	73643001	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004770	exon2	c.C478T	p.R160X	.	.	.
ATP6V0D2	245972	hgsc.bcm.edu	36	8	87234288	87234288	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152565	exon8	c.G1019A	p.R340Q	.	.	.
CNGB3	54714	hgsc.bcm.edu	36	8	87710311	87710311	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_019098	exon12	c.C1432T	p.R478X	.	.	.
TNKS	8658	hgsc.bcm.edu	36	8	9621575	9621575	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003747	exon13	c.C1936T	p.R646C	.	.	.
GABBR2	9568	hgsc.bcm.edu	36	9	100208206	100208206	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_005458	exon8	c.C1275A	p.T425T	.	.	.
ACTL7A	10881	hgsc.bcm.edu	36	9	110665322	110665322	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006687	exon1	c.G899A	p.R300H	.	.	.
OR2K2	26248	hgsc.bcm.edu	36	9	113129595	113129595	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_205859	exon1	c.G940A	p.E314K	.	.	.
OR2K2	26248	hgsc.bcm.edu	36	9	113130143	113130143	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_205859	exon1	c.G392A	p.R131K	.	.	.
C9orf43	257169	hgsc.bcm.edu	36	9	115227515	115227515	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152786	exon10	c.G936T	p.K312N	.	.	.
TNC	3371	hgsc.bcm.edu	36	9	116859390	116859390	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002160	exon15	c.C4442A	p.T1481N	.	.	.
OR1L8	138881	hgsc.bcm.edu	36	9	124370366	124370366	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001004454	exon1	c.A212G	p.D71G	.	.	.
ARPC5L	81873	hgsc.bcm.edu	36	9	126675849	126675849	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_030978	exon2	c.G207T	p.K69N	.	.	.
MAN1B1	11253	hgsc.bcm.edu	36	9	139121022	139121022	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_016219	exon10	c.C1506T	p.S502S	.	.	.
NFIB	4781	hgsc.bcm.edu	36	9	14297412	14297412	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001190738	exon2	c.G216A	p.E72E	.	.	.
C9orf93	203238	hgsc.bcm.edu	36	9	15685284	15685284	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_173550	exon11	c.G1267T	p.E423X	.	.	.
PLAA	9373	hgsc.bcm.edu	36	9	26916493	26916493	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001031689	exon5	c.G631T	p.D211Y	.	.	.
LINGO2	158038	hgsc.bcm.edu	36	9	27938989	27938989	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152570	exon7	c.C1681A	p.L561I	.	.	.
C9orf131	138724	hgsc.bcm.edu	36	9	35035031	35035031	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001040411	exon2	c.C2186T	p.A729V	.	.	.
UNC13B	10497	hgsc.bcm.edu	36	9	35300547	35300547	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006377	exon9	c.A845G	p.E282G	.	.	.
RECK	8434	hgsc.bcm.edu	36	9	36073431	36073431	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_021111	exon8	c.G509A	p.R170Q	.	.	.
MELK	9833	hgsc.bcm.edu	36	9	36633024	36633024	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_014791	exon11	c.G865T	p.E289X	.	.	.
INSL6	11172	hgsc.bcm.edu	36	9	5154118	5154118	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_007179	exon2	c.A437C	p.K146T	.	.	.
RANBP6	26953	hgsc.bcm.edu	36	9	6002763	6002763	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_012416	exon1	c.C2845T	p.R949C	.	.	.
IARS	3376	hgsc.bcm.edu	36	9	94062307	94062307	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002161	exon18	c.G1818T	p.K606N	.	.	.
ZNF782	158431	hgsc.bcm.edu	36	9	98620213	98620213	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001001662	exon6	c.G1913A	p.R638Q	.	.	.
ZNF782	158431	hgsc.bcm.edu	36	9	98620636	98620636	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001001662	exon6	c.G1490A	p.R497Q	.	.	.
CTSL3	392360	hgsc.bcm.edu	36	9	89578227	89578227	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	.	.	.	.	.	.	.
RAI2	10742	hgsc.bcm.edu	36	X	17729223	17729224	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_021785	exon2	c.829_830insT	p.K277_G278delinsX	.	.	.
CENPI	2491	hgsc.bcm.edu	36	X	100251181	100251181	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006733	exon4	c.C428A	p.S143Y	.	.	.
DRP2	1821	hgsc.bcm.edu	36	X	100390178	100390178	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001939	exon14	c.C1474T	p.R492W	.	.	.
TCEAL2	140597	hgsc.bcm.edu	36	X	101268658	101268658	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_080390	exon3	c.C200T	p.A67V	.	.	.
ESX1	80712	hgsc.bcm.edu	36	X	103385523	103385523	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_153448	exon2	c.C474T	p.F158F	.	.	.
IL1RAPL2	26280	hgsc.bcm.edu	36	X	104365255	104365255	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_017416	exon4	c.T454G	p.S152A	.	.	.
COL4A5	1287	hgsc.bcm.edu	36	X	107825240	107825240	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000495	exon50	c.G4891A	p.E1631K	.	.	.
GUCY2F	2986	hgsc.bcm.edu	36	X	108605231	108605231	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001522	exon2	c.T591G	p.I197M	.	.	.
GUCY2F	2986	hgsc.bcm.edu	36	X	108605524	108605524	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001522	exon2	c.C298T	p.L100F	.	.	.
TRPC5	7224	hgsc.bcm.edu	36	X	110977229	110977229	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_012471	exon6	c.C1469T	p.S490L	.	.	.
AKAP14	158798	hgsc.bcm.edu	36	X	118932810	118932810	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_178813	exon5	c.G382A	p.V128I	.	.	.
NKAP	79576	hgsc.bcm.edu	36	X	118954356	118954356	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_024528	exon4	c.C605T	p.S202L	.	.	.
LAMP2	3920	hgsc.bcm.edu	36	X	119474537	119474537	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002294	exon2	c.T180G	p.T60T	.	.	.
STAG2	10735	hgsc.bcm.edu	36	X	123025518	123025518	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001042751	exon20	c.G1961T	p.R654I	.	.	.
ODZ1	10178	hgsc.bcm.edu	36	X	123346246	123346246	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001163279	exon30	c.C6213T	p.Y2071Y	.	.	.
ODZ1	10178	hgsc.bcm.edu	36	X	123382337	123382337	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001163279	exon25	c.C4484T	p.A1495V	.	.	.
TLR7	51284	hgsc.bcm.edu	36	X	12816317	12816317	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_016562	exon3	c.T2769G	p.H923Q	.	.	.
SMARCA1	6594	hgsc.bcm.edu	36	X	128469614	128469614	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_139035	exon7	c.G951T	p.K317N	.	.	.
OCRL	4952	hgsc.bcm.edu	36	X	128524102	128524102	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001587	exon11	c.C1000T	p.R334X	.	.	.
RP13-102H20.1	158763	hgsc.bcm.edu	36	X	130044839	130044839	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_144967	exon3	c.G273A	p.P91P	.	.	.
RP13-102H20.1	158763	hgsc.bcm.edu	36	X	130047323	130047323	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_144967	exon8	c.C1036T	p.R346C	.	.	.
SAGE1	55511	hgsc.bcm.edu	36	X	134818712	134818712	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018666	exon13	c.C1465T	p.R489C	.	.	.
GPR112	139378	hgsc.bcm.edu	36	X	135273363	135273363	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_153834	exon13	c.T7339A	p.L2447M	.	.	.
HTATSF1	27336	hgsc.bcm.edu	36	X	135421661	135421661	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001163280	exon10	c.C2091T	p.F697F	.	.	.
VGLL1	51442	hgsc.bcm.edu	36	X	135445868	135445868	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_016267	exon2	c.C23T	p.A8V	.	.	.
CD40LG	959	hgsc.bcm.edu	36	X	135560160	135560160	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000074	exon2	c.G226T	p.E76X	.	.	.
CD40LG	959	hgsc.bcm.edu	36	X	135569161	135569161	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000074	exon5	c.C707T	p.S236L	.	.	.
ARHGEF6	9459	hgsc.bcm.edu	36	X	135597778	135597778	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004840	exon11	c.C1224T	p.I408I	.	.	.
RBMX	27316	hgsc.bcm.edu	36	X	135785202	135785202	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001164803	exon5	c.A338G	p.Q113R	.	.	.
GPM6B	2824	hgsc.bcm.edu	36	X	13711458	13711458	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001001995	exon4	c.G472T	p.E158X	.	.	.
MCF2	4168	hgsc.bcm.edu	36	X	138515558	138515558	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001099855	exon16	c.G1717T	p.E573X	.	.	.
MCF2	4168	hgsc.bcm.edu	36	X	138515561	138515561	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001099855	exon16	c.C1714T	p.R572X	.	.	.
MCF2	4168	hgsc.bcm.edu	36	X	138526190	138526190	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001099855	exon12	c.C1288A	p.L430I	.	.	.
MCF2	4168	hgsc.bcm.edu	36	X	138536533	138536533	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001099855	exon8	c.C667A	p.L223M	.	.	.
SLITRK2	84631	hgsc.bcm.edu	36	X	144713219	144713219	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001144008	exon3	c.G1584T	p.E528D	.	.	.
AFF2	2334	hgsc.bcm.edu	36	X	147862695	147862695	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001170628	exon13	c.G2196A	p.E732E	.	.	.
MAMLD1	10046	hgsc.bcm.edu	36	X	149422250	149422250	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001177466	exon4	c.G2014A	p.V672I	.	.	.
MTMR1	8776	hgsc.bcm.edu	36	X	149649247	149649247	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_003828	exon6	c.G540A	p.R180R	.	.	.
MAGEA5	4104	hgsc.bcm.edu	36	X	151034443	151034443	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_021049	exon3	c.G226A	p.D76N	.	.	.
GABRA3	2556	hgsc.bcm.edu	36	X	151127242	151127242	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000808	exon7	c.C665A	p.S222Y	.	.	.
GABRQ	55879	hgsc.bcm.edu	36	X	151564700	151564700	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_018558	exon3	c.G295T	p.E99X	.	.	.
MAGEA12	4111	hgsc.bcm.edu	36	X	151650945	151650945	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001166387	exon3	c.G512A	p.R171H	.	.	.
G6PD	2539	hgsc.bcm.edu	36	X	153416582	153416582	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000402	exon5	c.C570A	p.S190R	.	.	.
F8	2157	hgsc.bcm.edu	36	X	153811581	153811581	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000132	exon14	c.G3678T	p.E1226D	.	.	.
F8	2157	hgsc.bcm.edu	36	X	153812818	153812818	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000132	exon14	c.G2441A	p.R814Q	.	.	.
CLIC2	1193	hgsc.bcm.edu	36	X	154160413	154160413	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001289	exon6	c.C717T	p.Y239Y	.	.	.
SCML1	6322	hgsc.bcm.edu	36	X	17678284	17678284	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006746	exon5	c.G572A	p.S191N	.	.	.
SCML2	10389	hgsc.bcm.edu	36	X	18170486	18170486	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006089	exon14	c.G1968A	p.R656R	.	.	.
GPR64	10149	hgsc.bcm.edu	36	X	18927139	18927139	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001184833	exon25	c.G2462A	p.G821D	.	.	.
GPR64	10149	hgsc.bcm.edu	36	X	18927208	18927208	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001184833	exon25	c.G2393A	p.R798Q	.	.	.
PTCHD1	139411	hgsc.bcm.edu	36	X	23320941	23320941	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_173495	exon3	c.C1385T	p.T462M	.	.	.
CXorf58	254158	hgsc.bcm.edu	36	X	23863248	23863248	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152761	exon7	c.C570T	p.F190F	.	.	.
KLHL15	80311	hgsc.bcm.edu	36	X	23916488	23916488	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_030624	exon4	c.T1286G	p.F429C	.	.	.
WDR42B	139425	hgsc.bcm.edu	36	X	27909135	27909135	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001017930	exon1	c.G238A	p.E80K	.	.	.
MAGEB3	4114	hgsc.bcm.edu	36	X	30164346	30164346	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002365	exon5	c.G384A	p.M128I	.	.	.
MAGEB3	4114	hgsc.bcm.edu	36	X	30164400	30164400	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002365	exon5	c.G438T	p.K146N	.	.	.
MAGEB1	4112	hgsc.bcm.edu	36	X	30179132	30179132	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_002363	exon4	c.C601T	p.L201L	.	.	.
GK	2710	hgsc.bcm.edu	36	X	30649006	30649006	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_203391	exon18	c.C1474T	p.R492W	.	.	.
BCOR	54880	hgsc.bcm.edu	36	X	39815859	39815859	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001123383	exon5	c.T3026G	p.L1009X	.	.	.
SYN1	6853	hgsc.bcm.edu	36	X	47320844	47320844	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_133499	exon7	c.A977G	p.Y326C	.	.	.
ZNF182	7569	hgsc.bcm.edu	36	X	47727654	47727654	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006962	exon5	c.G174T	p.E58D	.	.	.
ZNF630	57232	hgsc.bcm.edu	36	X	47804172	47804172	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001190255	exon5	c.G561T	p.K187N	.	.	.
KDM5C	8242	hgsc.bcm.edu	36	X	53238978	53238978	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004187	exon26	c.G4579A	p.E1527K	.	.	.
KDM5C	8242	hgsc.bcm.edu	36	X	53240587	53240587	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004187	exon23	c.G3497A	p.R1166H	.	.	.
HUWE1	10075	hgsc.bcm.edu	36	X	53598406	53598406	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_031407	exon61	c.C8407T	p.P2803S	.	.	.
PHF8	23133	hgsc.bcm.edu	36	X	54038895	54038895	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_015107	exon12	c.G1279A	p.V427I	.	.	.
WNK3	65267	hgsc.bcm.edu	36	X	54292031	54292031	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001002838	exon17	c.G3475T	p.E1159X	.	.	.
WNK3	65267	hgsc.bcm.edu	36	X	54292739	54292739	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001002838	exon17	c.G2767T	p.E923X	.	.	.
ALAS2	212	hgsc.bcm.edu	36	X	55060803	55060803	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_000032	exon7	c.G844A	p.A282T	.	.	.
HEPH	9843	hgsc.bcm.edu	36	X	65326444	65326444	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001130860	exon6	c.G1011A	p.E337E	.	.	.
AR	367	hgsc.bcm.edu	36	X	66859461	66859461	+	Silent	SNP	C	C	T	rs6153	byCluster;byFrequency;byHapMap	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001011645	exon7	c.C921T	p.L307L	.	.	.
ARR3	407	hgsc.bcm.edu	36	X	69417380	69417380	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_004312	exon15	c.G1053A	p.P351P	.	.	.
UPRT	139596	hgsc.bcm.edu	36	X	74436340	74436340	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_145052	exon5	c.G608A	p.R203Q	.	.	.
ZDHHC15	158866	hgsc.bcm.edu	36	X	74561310	74561310	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_001146256	exon7	c.T611C	p.V204A	.	.	.
ATRX	546	hgsc.bcm.edu	36	X	76775832	76775832	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_138270	exon17	c.C4720A	p.L1574I	.	.	.
ATRX	546	hgsc.bcm.edu	36	X	76825877	76825877	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_138270	exon8	c.T1413G	p.T471T	.	.	.
CYSLTR1	10800	hgsc.bcm.edu	36	X	77415164	77415164	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_006639	exon3	c.T736C	p.F246L	.	.	.
ZCCHC5	203430	hgsc.bcm.edu	36	X	77799732	77799732	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152694	exon2	c.A842T	p.N281I	.	.	.
P2RY10	27334	hgsc.bcm.edu	36	X	78103400	78103400	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_198333	exon2	c.C727T	p.R243W	.	.	.
FAM46D	169966	hgsc.bcm.edu	36	X	79585252	79585252	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_152630	exon3	c.C558A	p.F186L	.	.	.
CPXCR1	53336	hgsc.bcm.edu	36	X	87895661	87895661	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_033048	exon3	c.G590T	p.R197I	.	.	.
DIAPH2	1730	hgsc.bcm.edu	36	X	96060229	96060229	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_007309	exon9	c.C935A	p.P312Q	.	.	.
DIAPH2	1730	hgsc.bcm.edu	36	X	96216843	96216843	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	039138b3-8970-4ae5-93ab-0a0275332f23	c1358eae-9d7d-46c2-aa29-0cdde0bc4b1d	NM_007309	exon19	c.G2174A	p.R725H	.	.	.