Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PKD2L1	9033	hgsc.bcm.edu	36	10	102048391	102048391	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_016112	exon4	c.C649T	p.R217W	.	.	.
MAT1A	4143	hgsc.bcm.edu	36	10	82026270	82026270	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_000429	exon6	c.G610A	p.V204I	.	.	.
CRTAC1	55118	hgsc.bcm.edu	36	10	99667368	99667368	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_018058	exon5	c.C594T	p.Y198Y	.	.	.
P2RX3	5024	hgsc.bcm.edu	36	11	56874847	56874847	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_002559	exon8	c.C741T	p.C247C	.	.	.
GDPD5	81544	hgsc.bcm.edu	36	11	74846398	74846398	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_030792	exon5	c.C303T	p.I101I	.	.	.
SLCO1B1	10599	hgsc.bcm.edu	36	12	21216935	21216935	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_006446	exon3	c.C169T	p.R57W	.	.	.
KIF5A	3798	hgsc.bcm.edu	36	12	56250141	56250141	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_004984	exon12	c.C1222T	p.R408C	.	.	.
MYO16	23026	hgsc.bcm.edu	36	13	108551201	108551201	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_001198950	exon28	c.C3403G	p.L1135V	.	.	.
SOHLH2	54937	hgsc.bcm.edu	36	13	35674121	35674121	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_017826	exon2	c.C158T	p.T53M	.	.	.
ARID4A	5926	hgsc.bcm.edu	36	14	57842558	57842558	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_023000	exon5	c.G249T	p.L83F	.	.	.
FAM82A2	55177	hgsc.bcm.edu	36	15	38831510	38831510	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_018145	exon3	c.C346T	p.R116X	.	.	.
VPS13C	54832	hgsc.bcm.edu	36	15	60009079	60009079	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_017684	exon49	c.G6070A	p.A2024T	.	.	.
C15orf55	256646	hgsc.bcm.edu	36	15	32434006	32434006	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_175741	exon5	c.A1059G	p.R353R	.	.	.
MYH8	4626	hgsc.bcm.edu	36	17	10239227	10239227	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_002472	exon34	c.G4910A	p.R1637H	.	.	.
SPAG5	10615	hgsc.bcm.edu	36	17	23930293	23930293	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_006461	exon19	c.G3110A	p.R1037H	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_001126114	exon5	c.G524A	p.R175H	 TP53,lung,NS,Substitution - Missense,0 	.	.
MYH10	4628	hgsc.bcm.edu	36	17	8392785	8392785	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_005964	exon9	c.A935G	p.N312S	.	.	.
GLP2R	9340	hgsc.bcm.edu	36	17	9705215	9705215	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_004246	exon8	c.C960T	p.F320F	.	.	.
LYPD4	147719	hgsc.bcm.edu	36	19	47034130	47034130	+	Missense_Mutation	SNP	G	G	A	rs34770649	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_173506	exon4	c.C257T	p.S86L	.	.	.
CCDC114	93233	hgsc.bcm.edu	36	19	53497907	53497907	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_144577	exon10	c.C985T	p.R329C	.	.	.
COL11A1	1301	hgsc.bcm.edu	36	1	103312864	103312864	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_001854	exon4	c.G549T	p.K183N	.	.	.
ARNT	405	hgsc.bcm.edu	36	1	149075525	149075525	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_001197325	exon6	c.G510A	p.R170R	.	.	.
CSF3R	1441	hgsc.bcm.edu	36	1	36707906	36707906	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_172313	exon11	c.G1408A	p.A470T	.	.	.
LRRIQ3	127255	hgsc.bcm.edu	36	1	74420926	74420926	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_001105659	exon3	c.G457A	p.A153T	.	.	.
SETD4	54093	hgsc.bcm.edu	36	21	36353027	36353027	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_017438	exon2	c.G30A	p.R10R	.	.	.
PPM1F	9647	hgsc.bcm.edu	36	22	20624003	20624003	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_014634	exon3	c.C256T	p.Q86X	.	.	.
NMS	129521	hgsc.bcm.edu	36	2	100455736	100455736	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_001011717	exon2	c.C124A	p.Q42K	.	.	.
CREG2	200407	hgsc.bcm.edu	36	2	101333876	101333876	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_153836	exon4	c.G814A	p.G272R	.	.	.
DARS	1615	hgsc.bcm.edu	36	2	136386548	136386548	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_001349	exon13	c.C1208T	p.T403I	.	.	.
GAD1	2571	hgsc.bcm.edu	36	2	171424629	171424629	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_000817	exon17	c.G1776A	p.Q592Q	.	.	.
SH3BP4	23677	hgsc.bcm.edu	36	2	235626033	235626033	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_014521	exon5	c.G2567A	p.R856H	.	.	.
GALNT14	79623	hgsc.bcm.edu	36	2	31069222	31069222	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_024572	exon2	c.C285A	p.D95E	.	.	.
CEP70	80321	hgsc.bcm.edu	36	3	139710042	139710042	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_024491	exon12	c.G979T	p.D327Y	.	.	.
THRB	7068	hgsc.bcm.edu	36	3	24168896	24168896	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_000461	exon5	c.G373A	p.E125K	.	.	.
ITIH1	3697	hgsc.bcm.edu	36	3	52795443	52795443	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_001166434	exon11	c.C1260T	p.V420V	.	.	.
ITIH4	3700	hgsc.bcm.edu	36	3	52825998	52825998	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_002218	exon21	c.C2413T	p.R805W	.	.	.
CPE	1363	hgsc.bcm.edu	36	4	166625058	166625058	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_001873	exon5	c.C825T	p.D275D	.	.	.
F11	2160	hgsc.bcm.edu	36	4	187438164	187438164	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_000128	exon8	c.C760G	p.L254V	.	.	.
CRMP1	1400	hgsc.bcm.edu	36	4	5913669	5913669	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_001313	exon3	c.G298A	p.G100R	.	.	.
IBSP	3381	hgsc.bcm.edu	36	4	88951627	88951627	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_004967	exon7	c.C495T	p.S165S	.	.	.
STARD4	134429	hgsc.bcm.edu	36	5	110864694	110864694	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_139164	exon5	c.A302G	p.Y101C	.	.	.
APC	324	hgsc.bcm.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_001127511	exon14	c.C4294T	p.R1432X	 APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.
FBN2	2201	hgsc.bcm.edu	36	5	127699602	127699602	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_001999	exon28	c.C3701T	p.T1234M	.	.	.
FBN2	2201	hgsc.bcm.edu	36	5	127728274	127728274	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_001999	exon18	c.G2346C	p.G782G	.	.	.
GALNT10	55568	hgsc.bcm.edu	36	5	153769332	153769332	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_198321	exon9	c.C1203T	p.Y401Y	.	.	.
DOCK2	1794	hgsc.bcm.edu	36	5	169368179	169368179	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_004946	exon31	c.A3173C	p.K1058T	.	.	.
RICTOR	253260	hgsc.bcm.edu	36	5	39026838	39026838	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_152756	exon7	c.C553T	p.R185X	.	.	.
PIK3R1	5295	hgsc.bcm.edu	36	5	67626853	67626853	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_181523	exon12	c.A1690G	p.N564D	 PIK3R1,central_nervous_system,brain,Substitution - Missense,-2 	.	.
VNN1	8876	hgsc.bcm.edu	36	6	133055090	133055090	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_004666	exon5	c.G1153A	p.G385R	.	.	.
SERAC1	84947	hgsc.bcm.edu	36	6	158487881	158487881	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_032861	exon6	c.C408T	p.L136L	.	.	.
FAM120B	84498	hgsc.bcm.edu	36	6	170469866	170469866	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_032448	exon2	c.G1463A	p.R488Q	.	.	.
HIST1H2BA	255626	hgsc.bcm.edu	36	6	25835219	25835219	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_170610	exon1	c.G104A	p.R35H	.	.	.
PRSS16	10279	hgsc.bcm.edu	36	6	27324910	27324910	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_005865	exon4	c.A390G	p.E130E	.	.	.
NOM1	64434	hgsc.bcm.edu	36	7	156448471	156448471	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_138400	exon6	c.C1752T	p.N584N	.	.	.
ZNF804B	219578	hgsc.bcm.edu	36	7	88801536	88801536	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_181646	exon4	c.A1304G	p.N435S	.	.	.
TRRAP	8295	hgsc.bcm.edu	36	7	98429156	98429156	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_003496	exon64	c.G9778A	p.G3260R	.	.	.
DERL1	79139	hgsc.bcm.edu	36	8	124123427	124123427	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_024295	exon1	c.C117T	p.L39L	.	.	.
C5	727	hgsc.bcm.edu	36	9	122791203	122791203	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_001735	exon25	c.T3172C	p.S1058P	.	.	.
ARMCX1	51309	hgsc.bcm.edu	36	X	100695536	100695536	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_016608	exon4	c.C967A	p.H323N	.	.	.
ZBTB33	10009	hgsc.bcm.edu	36	X	119272346	119272346	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_006777	exon2	c.G1048A	p.V350I	.	.	.
DIAPH2	1730	hgsc.bcm.edu	36	X	96023298	96023298	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	f4df8a18-c69c-4cb4-b5d4-62a737960b0e	ff3a3108-2b43-42f2-9164-e679bde55b12	NM_006729	exon5	c.G512A	p.R171Q	.	.	.