Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target DNMBP 23268 hgsc.bcm.edu 36 10 101629632 101629632 + Missense_Mutation SNP C C G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_015221 exon16 c.G4474C p.G1492R . . . SCD 6319 hgsc.bcm.edu 36 10 102106506 102106506 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_005063 exon5 c.C875T p.A292V . . . SFXN2 118980 hgsc.bcm.edu 36 10 104479543 104479543 + Missense_Mutation SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_178858 exon6 c.T581C p.M194T . . . NT5C2 22978 hgsc.bcm.edu 36 10 104842946 104842946 + Nonsense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_012229 exon15 c.C1099T p.R367X . . . TACC2 10579 hgsc.bcm.edu 36 10 123961066 123961066 + Missense_Mutation SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_006997 exon3 c.A1370G p.D457G . . . CUBN 8029 hgsc.bcm.edu 36 10 17167696 17167696 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001081 exon16 c.G2016A p.P672P . . . CSGALNACT2 55454 hgsc.bcm.edu 36 10 42970883 42970883 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_018590 exon2 c.C280T p.R94W . . . OGDHL 55753 hgsc.bcm.edu 36 10 50625209 50625209 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001143996 exon8 c.C868T p.R290C . . . PBLD 64081 hgsc.bcm.edu 36 10 69718308 69718308 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001033083 exon8 c.C629A p.A210E . . . ADAMTS14 140766 hgsc.bcm.edu 36 10 72138473 72138473 + Missense_Mutation SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_080722 exon4 c.A803G p.D268G . . . OIT3 170392 hgsc.bcm.edu 36 10 74328654 74328654 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_152635 exon2 c.C288T p.G96G . . . ANGPTL5 253935 hgsc.bcm.edu 36 11 101270854 101270854 + Silent SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_178127 exon8 c.T813C p.F271F . . . CWF19L2 143884 hgsc.bcm.edu 36 11 106724985 106724985 + Missense_Mutation SNP T T A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_152434 exon14 c.A2090T p.Y697F . . . ARHGAP20 57569 hgsc.bcm.edu 36 11 109984980 109984980 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_020809 exon9 c.C713A p.S238Y . . . DSCAML1 57453 hgsc.bcm.edu 36 11 116908318 116908318 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_020693 exon4 c.C821T p.A274V . . . OR10S1 219873 hgsc.bcm.edu 36 11 123353074 123353074 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001004474 exon1 c.C535T p.R179C . . . VPS26B 112936 hgsc.bcm.edu 36 11 133615189 133615189 + Missense_Mutation SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_052875 exon3 c.A475G p.N159D . . . DCDC1 341019 hgsc.bcm.edu 36 11 31283776 31283776 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_181807 exon6 c.C716T p.T239M . . . TMEM41B 440026 hgsc.bcm.edu 36 11 9261711 9261711 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_015012 exon7 c.G712A p.A238T . . . CWF19L2 143884 hgsc.bcm.edu 36 11 106804913 106804915 + In_Frame_Del DEL ATG ATG - novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 ATG ATG ATG - ATG ATG Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_152434 exon8 c.1253_1255del p.418_419del . . . OR8I2 120586 hgsc.bcm.edu 36 11 55618147 55618148 + Frame_Shift_Del DEL AC AC - novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 AC AC AC - AC AC Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001003750 exon1 c.788_789del p.263_263del . . . C12orf59 120939 hgsc.bcm.edu 36 12 10230304 10230304 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_153022 exon3 c.C96T p.G32G . . . APPL2 55198 hgsc.bcm.edu 36 12 104107977 104107977 + Missense_Mutation SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_018171 exon15 c.T1328C p.L443P . . . PWP1 11137 hgsc.bcm.edu 36 12 106606641 106606641 + Missense_Mutation SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_007062 exon3 c.A251G p.D84G . . . ACACB 32 hgsc.bcm.edu 36 12 108182761 108182761 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001093 exon47 c.C6590T p.A2197V . . . ERC1 23085 hgsc.bcm.edu 36 12 1089643 1089643 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_178039 exon5 c.C1186T p.R396C . . . FBXW8 26259 hgsc.bcm.edu 36 12 115907568 115907568 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_153348 exon6 c.C1010T p.A337V . . . PTPRO 5800 hgsc.bcm.edu 36 12 15633698 15633698 + Silent SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_002848 exon24 c.G3369A p.R1123R . . . KIAA0528 9847 hgsc.bcm.edu 36 12 22526891 22526891 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_014802 exon14 c.G1604A p.S535N . . . PDZRN4 29951 hgsc.bcm.edu 36 12 40247911 40247911 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001164595 exon9 c.G1527T p.E509D . . . SPATS2 65244 hgsc.bcm.edu 36 12 48204841 48204841 + Silent SNP C C A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_023071 exon13 c.C1221A p.A407A . . . STAT2 6773 hgsc.bcm.edu 36 12 55026528 55026528 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_198332 exon21 c.G1997A p.R666Q . . . MYO1A 4640 hgsc.bcm.edu 36 12 55723166 55723166 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_005379 exon12 c.G1055A p.R352H . . . SCNN1A 6337 hgsc.bcm.edu 36 12 6335242 6335242 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001159576 exon4 c.C1118A p.S373Y . . . CAND1 55832 hgsc.bcm.edu 36 12 65982495 65982495 + Missense_Mutation SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_018448 exon8 c.T1126C p.S376P . . . CAND1 55832 hgsc.bcm.edu 36 12 65984772 65984772 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_018448 exon9 c.C1414T p.H472Y . . . CD163 9332 hgsc.bcm.edu 36 12 7531902 7531902 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_203416 exon7 c.G1469A p.R490H . . . ITGBL1 9358 hgsc.bcm.edu 36 13 100903190 100903190 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_004791 exon1 c.G5A p.R2H . . . ATP11A 23250 hgsc.bcm.edu 36 13 112487492 112487492 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_015205 exon2 c.G82A p.V28M . . . ATP12A 479 hgsc.bcm.edu 36 13 24162785 24162785 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001185085 exon7 c.G725A p.R242H . . . RNF17 56163 hgsc.bcm.edu 36 13 24316896 24316896 + Nonsense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001184993 exon21 c.C2938T p.R980X . . . N4BP2L1 90634 hgsc.bcm.edu 36 13 31875143 31875143 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_052818 exon5 c.C668A p.A223D . . . C13orf23 80209 hgsc.bcm.edu 36 13 38485542 38485542 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_170719 exon10 c.C1781A p.P594H . . . UTP14C 9724 hgsc.bcm.edu 36 13 51502931 51502931 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_021645 exon2 c.C1990T p.P664S . . . LMO7 4008 hgsc.bcm.edu 36 13 75276463 75276463 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_005358 exon9 c.G855T p.K285N . . . TTC5 91875 hgsc.bcm.edu 36 14 19843929 19843929 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_138376 exon1 c.C8A p.A3D . . . DAD1 1603 hgsc.bcm.edu 36 14 22113872 22113872 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001344 exon2 c.C313T p.H105Y . . . TM9SF1 10548 hgsc.bcm.edu 36 14 23728655 23728655 + Missense_Mutation SNP C C A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_006405 exon6 c.G1627T p.G543C . . . C14orf50 145376 hgsc.bcm.edu 36 14 64123708 64123708 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_172365 exon10 c.G755A p.R252Q . . . NRXN3 9369 hgsc.bcm.edu 36 14 79199971 79199971 + Missense_Mutation SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_138970 exon3 c.T527C p.V176A . . . SERPINA4 5267 hgsc.bcm.edu 36 14 94100092 94100092 + Missense_Mutation SNP G G C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_006215 exon2 c.G520C p.D174H . . . TCL6 27004 hgsc.bcm.edu 36 14 95198751 95198751 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 . . . . . . . INO80 54617 hgsc.bcm.edu 36 15 39152950 39152950 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_017553 exon11 c.G1363A p.A455T . . . CAPN3 825 hgsc.bcm.edu 36 15 40489463 40489463 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_173089 exon4 c.G98A p.R33H . . . ZSCAN29 146050 hgsc.bcm.edu 36 15 41443510 41443510 + Missense_Mutation SNP C C A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_152455 exon4 c.G1585T p.A529S . . . FBN1 2200 hgsc.bcm.edu 36 15 46507916 46507916 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_000138 exon57 c.C6916T p.R2306C . . . ATP8B4 79895 hgsc.bcm.edu 36 15 48060757 48060757 + Missense_Mutation SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_024837 exon11 c.A775G p.S259G . . . TLN2 83660 hgsc.bcm.edu 36 15 60827911 60827911 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_015059 exon30 c.C4095T p.C1365C . . . RASGRF1 5923 hgsc.bcm.edu 36 15 77111663 77111663 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_002891 exon7 c.G1009A p.V337I . . . MTHFS 10588 hgsc.bcm.edu 36 15 77924654 77924654 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001199760 exon4 c.G493A p.D165N . . . ADAMTSL3 57188 hgsc.bcm.edu 36 15 82450902 82450902 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_207517 exon23 c.C3905T p.S1302F . . . TXNDC11 51061 hgsc.bcm.edu 36 16 11732073 11732073 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_015914 exon4 c.C628T p.R210C . . . MKL2 57496 hgsc.bcm.edu 36 16 14262446 14262446 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_014048 exon17 c.C2794T p.L932L . . . PALB2 79728 hgsc.bcm.edu 36 16 23548917 23548917 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_024675 exon5 c.C2059T p.P687S . . . ABCC12 94160 hgsc.bcm.edu 36 16 46732185 46732185 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_033226 exon4 c.G571A p.A191T . . . N-PAC 84656 hgsc.bcm.edu 36 16 4804566 4804566 + Silent SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_032569 exon11 c.C990T p.C330C . . . NLRC5 84166 hgsc.bcm.edu 36 16 55646496 55646496 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_032206 exon26 c.C3648T p.G1216G . . . DDX19B 11269 hgsc.bcm.edu 36 16 68917008 68917008 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001014449 exon5 c.G196A p.A66T . . . FANCA 2175 hgsc.bcm.edu 36 16 88404650 88404650 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_000135 exon5 c.G488A p.R163H . . . PLXDC1 57125 hgsc.bcm.edu 36 17 34515683 34515683 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_020405 exon7 c.C761T p.T254I . . . KRT20 54474 hgsc.bcm.edu 36 17 36294793 36294793 + Silent SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_019010 exon1 c.C171T p.S57S . . . ACLY 47 hgsc.bcm.edu 36 17 37322285 37322285 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_198830 exon3 c.C196T p.R66C . . . EFTUD2 9343 hgsc.bcm.edu 36 17 40312478 40312478 + Missense_Mutation SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_004247 exon9 c.T674C p.V225A . . . CLTC 1213 hgsc.bcm.edu 36 17 55092663 55092663 + Missense_Mutation SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_004859 exon7 c.A1099G p.K367E . . . USP32 84669 hgsc.bcm.edu 36 17 55703574 55703574 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_032582 exon6 c.G622A p.A208T . . . TMEM104 54868 hgsc.bcm.edu 36 17 70285087 70285087 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_017728 exon2 c.C23T p.T8I . . . GRB2 2885 hgsc.bcm.edu 36 17 70833631 70833631 + Missense_Mutation SNP C C A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_002086 exon4 c.G242T p.G81V . . . DNAH2 146754 hgsc.bcm.edu 36 17 7581230 7581230 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_020877 exon7 c.C1099T p.L367F . . . FMNL1 752 hgsc.bcm.edu 36 17 40679470 40679472 + In_Frame_Del DEL CAT CAT - novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 CAT CAT CAT - CAT CAT Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_005892 exon25 c.3201_3203del p.1067_1068del . . . SS18 6760 hgsc.bcm.edu 36 18 21891638 21891638 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_005637 exon4 c.C298T p.R100C . . . DSG4 147409 hgsc.bcm.edu 36 18 27220729 27220729 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001134453 exon3 c.C165T p.A55A . . . TTR 7276 hgsc.bcm.edu 36 18 27432559 27432559 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_000371 exon4 c.C367T p.R123C . . . TYMS 7298 hgsc.bcm.edu 36 18 662957 662957 + Missense_Mutation SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001071 exon7 c.A902G p.Y301C . . . LAMA1 284217 hgsc.bcm.edu 36 18 7003899 7003899 + Missense_Mutation SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_005559 exon23 c.A3278G p.D1093G . . . KIR2DL1 3802 hgsc.bcm.edu 36 19 59986280 59986281 + Frame_Shift_Ins INS - - A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 - - . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_014218 exon6 c.810_811insA p.N270fs . . . ZNF491 126069 hgsc.bcm.edu 36 19 11778212 11778212 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_152356 exon3 c.C444T p.T148T . . . ZFP82 284406 hgsc.bcm.edu 36 19 41576466 41576466 + Missense_Mutation SNP C C A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_133466 exon5 c.G616T p.A206S . . . SLC17A7 57030 hgsc.bcm.edu 36 19 54630285 54630285 + Missense_Mutation SNP A A C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_020309 exon3 c.T386G p.V129G . . . SIGLEC8 27181 hgsc.bcm.edu 36 19 56653172 56653172 + Silent SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_014442 exon1 c.C282A p.G94G . . . USP29 57663 hgsc.bcm.edu 36 19 62333734 62333734 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_020903 exon4 c.G1879A p.A627T . . . ELAVL1 1994 hgsc.bcm.edu 36 19 7934661 7934661 + Silent SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001419 exon6 c.C687T p.S229S . . . ZNF426 79088 hgsc.bcm.edu 36 19 9500398 9500398 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_024106 exon8 c.G1323A p.T441T . . . AGL 178 hgsc.bcm.edu 36 1 100099751 100099751 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_000645 exon1 c.C136T p.R46C . . . OLFM3 118427 hgsc.bcm.edu 36 1 102042465 102042465 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_058170 exon6 c.G1294A p.A432T . . . KCNA2 3737 hgsc.bcm.edu 36 1 110947467 110947467 + Silent SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_004974 exon2 c.A1461G p.T487T . . . FCRLB 127943 hgsc.bcm.edu 36 1 159959991 159959991 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001002901 exon3 c.G263A p.R88Q . . . SPEN 23013 hgsc.bcm.edu 36 1 16072038 16072038 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_015001 exon2 c.G224A p.R75H . . . SPEN 23013 hgsc.bcm.edu 36 1 16130656 16130656 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_015001 exon11 c.C5334T p.D1778D . . . MAEL 84944 hgsc.bcm.edu 36 1 165253812 165253812 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_032858 exon10 c.C1033T p.R345C . . . PADI1 29943 hgsc.bcm.edu 36 1 17424901 17424901 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_013358 exon5 c.G417T p.W139C . . . ASTN1 460 hgsc.bcm.edu 36 1 175266611 175266611 + Silent SNP A A T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_004319 exon4 c.T966A p.S322S . . . C1orf125 126859 hgsc.bcm.edu 36 1 177770669 177770669 + Missense_Mutation SNP G G C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_144696 exon25 c.G2980C p.E994Q . . . ASPM 259266 hgsc.bcm.edu 36 1 195378536 195378536 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_018136 exon3 c.G1469A p.R490H . . . NFASC 23114 hgsc.bcm.edu 36 1 203219828 203219828 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001160331 exon20 c.G2554A p.A852T . . . RAB3GAP2 25782 hgsc.bcm.edu 36 1 218391364 218391364 + Missense_Mutation SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_012414 exon35 c.A4034G p.Q1345R . . . HEATR1 55127 hgsc.bcm.edu 36 1 234827890 234827890 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_018072 exon5 c.C514T p.P172S . . . RGS7 6000 hgsc.bcm.edu 36 1 239044676 239044676 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_002924 exon12 c.G808A p.D270N . . . OR2L13 284521 hgsc.bcm.edu 36 1 246330066 246330066 + Missense_Mutation SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_175911 exon3 c.T766C p.Y256H . . . TMEM57 55219 hgsc.bcm.edu 36 1 25697434 25697434 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_018202 exon11 c.G1885A p.A629T . . . WDTC1 23038 hgsc.bcm.edu 36 1 27493169 27493169 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_015023 exon8 c.C732T p.D244D . . . PUM1 9698 hgsc.bcm.edu 36 1 31182110 31182110 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001020658 exon21 c.G3402A p.A1134A . . . YARS 8565 hgsc.bcm.edu 36 1 33019277 33019277 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_003680 exon10 c.C1099T p.R367W . . . CDCA8 55143 hgsc.bcm.edu 36 1 37938697 37938697 + Nonsense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_018101 exon6 c.C340T p.R114X . . . ST3GAL3 6487 hgsc.bcm.edu 36 1 44168425 44168425 + Missense_Mutation SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_174964 exon12 c.T1118C p.F373S . . . YIPF1 54432 hgsc.bcm.edu 36 1 54104529 54104529 + Nonsense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_018982 exon9 c.C763T p.R255X . . . ZRANB2 9406 hgsc.bcm.edu 36 1 71310392 71310392 + Missense_Mutation SNP C C A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_005455 exon6 c.G513T p.E171D . . . NEGR1 257194 hgsc.bcm.edu 36 1 71831101 71831101 + Silent SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_173808 exon6 c.C927T p.S309S . . . MSH4 4438 hgsc.bcm.edu 36 1 76151160 76151160 + Missense_Mutation SNP A A T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_002440 exon20 c.A2811T p.X937Y . . . ST6GALNAC5 81849 hgsc.bcm.edu 36 1 77301253 77301253 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_030965 exon5 c.C785T p.P262L . . . PCSK2 5126 hgsc.bcm.edu 36 20 17394059 17394059 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_002594 exon11 c.C1291T p.R431C . . . ZNF337 26152 hgsc.bcm.edu 36 20 25604945 25604945 + Nonsense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_015655 exon5 c.C979T p.R327X . . . C20orf152 140894 hgsc.bcm.edu 36 20 34075068 34075068 + Missense_Mutation SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_080834 exon11 c.T1388C p.M463T . . . SMOX 54498 hgsc.bcm.edu 36 20 4111062 4111062 + Silent SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_175839 exon5 c.G936A p.S312S . . . PREX1 57580 hgsc.bcm.edu 36 20 46729639 46729639 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_020820 exon12 c.G1496A p.G499D . . . CLDN17 26285 hgsc.bcm.edu 36 21 30460293 30460293 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_012131 exon1 c.G514A p.A172T . . . KCNE1 3753 hgsc.bcm.edu 36 21 34743582 34743582 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001127668 exon3 c.C221T p.S74L . . . RCAN1 1827 hgsc.bcm.edu 36 21 34817836 34817836 + Missense_Mutation SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_004414 exon2 c.A295G p.T99A . . . CABIN1 23523 hgsc.bcm.edu 36 22 22810554 22810554 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001199281 exon21 c.C2933T p.A978V . . . LRP1B 53353 hgsc.bcm.edu 36 2 140930547 140930547 + Missense_Mutation SNP A A C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_018557 exon62 c.T9910G p.F3304V . . . ZEB2 9839 hgsc.bcm.edu 36 2 144873026 144873026 + Missense_Mutation SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001171653 exon7 c.T2126C p.V709A . . . SCN1A 6323 hgsc.bcm.edu 36 2 166611653 166611653 + Missense_Mutation SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001165964 exon9 c.T1250C p.L417S . . . TTN 7273 hgsc.bcm.edu 36 2 179319885 179319885 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_133379 exon46 c.C15487T p.R5163C . . . CERKL 375298 hgsc.bcm.edu 36 2 182117754 182117754 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_201548 exon11 c.G1283A p.S428N . . . CASP8 841 hgsc.bcm.edu 36 2 201849934 201849934 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_033356 exon6 c.C755T p.A252V . . . RHBDD1 84236 hgsc.bcm.edu 36 2 227568420 227568420 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001167608 exon9 c.G886A p.G296R . . . PID1 55022 hgsc.bcm.edu 36 2 229598632 229598632 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001100818 exon3 c.C614A p.S205Y . . . DNMT3A 1788 hgsc.bcm.edu 36 2 25310662 25310662 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_175629 exon23 c.C2729T p.A910V . . . PROKR1 10887 hgsc.bcm.edu 36 2 68735924 68735924 + Silent SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_138964 exon2 c.G894A p.A298A . . . DYSF 8291 hgsc.bcm.edu 36 2 71761689 71761689 + Silent SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001130982 exon54 c.G6093A p.E2031E . . . ADAM17 6868 hgsc.bcm.edu 36 2 9594307 9594307 + Nonsense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_003183 exon3 c.G332A p.W111X . . . SLC9A9 285195 hgsc.bcm.edu 36 3 144775669 144775670 + Frame_Shift_Ins INS - - A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 - - - A - - Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_173653 exon8 c.951_952insT p.F317fs . . . IFT80 57560 hgsc.bcm.edu 36 3 161479710 161479711 + Frame_Shift_Ins INS - - T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 - - - T - - Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001190242 exon15 c.1390_1391insA p.W464fs . . . ATP2B2 491 hgsc.bcm.edu 36 3 10345505 10345505 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001683 exon20 c.C3590T p.S1197L . . . FBXO40 51725 hgsc.bcm.edu 36 3 122828380 122828380 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_016298 exon4 c.G2063A p.R688H . . . KPNA1 3836 hgsc.bcm.edu 36 3 123698062 123698062 + Missense_Mutation SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_002264 exon2 c.A41G p.Y14C . . . ACPL2 92370 hgsc.bcm.edu 36 3 142494569 142494569 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_152282 exon8 c.C1275T p.G425G . . . ATR 545 hgsc.bcm.edu 36 3 143667972 143667972 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001184 exon40 c.C6781T p.P2261S . . . ATR 545 hgsc.bcm.edu 36 3 143694726 143694726 + Missense_Mutation SNP C C A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001184 exon35 c.G6016T p.V2006L . . . MED12L 116931 hgsc.bcm.edu 36 3 152385835 152385835 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_053002 exon11 c.C1523T p.T508M . . . MBNL1 4154 hgsc.bcm.edu 36 3 153645783 153645783 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_207293 exon4 c.G572A p.G191D . . . PTX3 5806 hgsc.bcm.edu 36 3 158643266 158643266 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_002852 exon3 c.G950T p.C317F . . . EVI1 2122 hgsc.bcm.edu 36 3 170331950 170331950 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001105077 exon4 c.G202A p.E68K . . . XYLB 9942 hgsc.bcm.edu 36 3 38413609 38413609 + Missense_Mutation SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_005108 exon17 c.A1393G p.T465A . . . CCBP2 1238 hgsc.bcm.edu 36 3 42881149 42881149 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001296 exon3 c.G151T p.V51F . . . SETD2 29072 hgsc.bcm.edu 36 3 47118019 47118019 + Missense_Mutation SNP A A C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_014159 exon8 c.T4948G p.F1650V . . . MAGI1 9223 hgsc.bcm.edu 36 3 65347902 65347902 + Missense_Mutation SNP T T A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_015520 exon15 c.A2456T p.E819V . . . FOXP1 27086 hgsc.bcm.edu 36 3 71104508 71104508 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_032682 exon18 c.C1540T p.R514C . . . SEC31A 22872 hgsc.bcm.edu 36 4 84007343 84007344 + Frame_Shift_Ins INS - - T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 - - - T - - Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001077207 exon9 c.1033_1034insA p.Q345fs . . . QRFPR 84109 hgsc.bcm.edu 36 4 122470072 122470072 + Missense_Mutation SNP A A T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_198179 exon6 c.T1143A p.N381K . . . BOD1L 259282 hgsc.bcm.edu 36 4 13191886 13191886 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_148894 exon20 c.G8636A p.R2879H . . . MMAA 166785 hgsc.bcm.edu 36 4 146779870 146779870 + Silent SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_172250 exon2 c.G129A p.P43P . . . FBXW7 55294 hgsc.bcm.edu 36 4 153468834 153468834 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_018315 exon8 c.G1154A p.R385H FBXW7,large_intestine,NS,Substitution - Missense,0 . . CD38 952 hgsc.bcm.edu 36 4 15448861 15448861 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001775 exon5 c.C634T p.R212C . . . CPE 1363 hgsc.bcm.edu 36 4 166608350 166608350 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001873 exon3 c.C565T p.R189W . . . TLL1 7092 hgsc.bcm.edu 36 4 167133451 167133451 + Missense_Mutation SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_012464 exon3 c.A326G p.Y109C . . . ANXA10 11199 hgsc.bcm.edu 36 4 169285882 169285882 + Nonsense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_007193 exon2 c.C91T p.Q31X . . . GLRA3 8001 hgsc.bcm.edu 36 4 175873242 175873242 + Silent SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001042543 exon5 c.A546G p.V182V . . . FAM149A 25854 hgsc.bcm.edu 36 4 187323501 187323501 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001006655 exon10 c.C1053T p.G351G . . . WDFY3 23001 hgsc.bcm.edu 36 4 86000650 86000650 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_014991 exon4 c.G119A p.R40Q . . . SPARCL1 8404 hgsc.bcm.edu 36 4 88631041 88631041 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001128310 exon7 c.C1305A p.S435R . . . SLCO6A1 133482 hgsc.bcm.edu 36 5 101737043 101737043 + Missense_Mutation SNP T T A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_173488 exon13 c.A2072T p.Y691F . . . HISPPD1 23262 hgsc.bcm.edu 36 5 102546913 102546913 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_015216 exon24 c.G3002A p.R1001H . . . CTNND2 1501 hgsc.bcm.edu 36 5 11041277 11041277 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001332 exon20 c.G3289A p.A1097T . . . STARD4 134429 hgsc.bcm.edu 36 5 110863530 110863530 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_139164 exon6 c.G571A p.A191T . . . KCNN2 3781 hgsc.bcm.edu 36 5 113768427 113768427 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_021614 exon3 c.G976A p.A326T . . . FBN2 2201 hgsc.bcm.edu 36 5 127696541 127696541 + Missense_Mutation SNP C C A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001999 exon32 c.G4184T p.C1395F . . . ADAMTS19 171019 hgsc.bcm.edu 36 5 128985898 128985898 + Silent SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_133638 exon10 c.G1710A p.Q570Q . . . DNAH5 1767 hgsc.bcm.edu 36 5 13822677 13822677 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001369 exon57 c.C9653T p.A3218V . . . CSF1R 1436 hgsc.bcm.edu 36 5 149415837 149415837 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_005211 exon19 c.G2499A p.T833T . . . GRIA1 2890 hgsc.bcm.edu 36 5 153010170 153010170 + Missense_Mutation SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001114183 exon4 c.A548G p.E183G . . . SOX30 11063 hgsc.bcm.edu 36 5 156998161 156998161 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_178424 exon4 c.G1535A p.R512H . . . CDH6 1004 hgsc.bcm.edu 36 5 31338091 31338091 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_004932 exon6 c.G928A p.G310S . . . GOLPH3 64083 hgsc.bcm.edu 36 5 32162452 32162452 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_022130 exon4 c.C520T p.R174W . . . ITGA1 3672 hgsc.bcm.edu 36 5 52240499 52240499 + Silent SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_181501 exon13 c.T1470C p.F490F . . . MAP1B 4131 hgsc.bcm.edu 36 5 71527217 71527217 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_005909 exon5 c.C2279T p.P760L . . . IQGAP2 10788 hgsc.bcm.edu 36 5 76024937 76024937 + Missense_Mutation SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_006633 exon31 c.A3907G p.T1303A . . . HAVCR2 84868 hgsc.bcm.edu 36 5 156468526 156468528 + In_Frame_Del DEL AGC AGC - novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 AGC AGC . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_032782 exon1 c.45_47del p.15_16del . . . BVES 11149 hgsc.bcm.edu 36 6 105679145 105679145 + Silent SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_007073 exon5 c.A618G p.S206S . . . PKIB 5570 hgsc.bcm.edu 36 6 123080758 123080758 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_032471 exon3 c.C120T p.D40D . . . C6orf58 352999 hgsc.bcm.edu 36 6 127943240 127943240 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001010905 exon3 c.C526T p.R176C . . . PTPRK 5796 hgsc.bcm.edu 36 6 128602939 128602939 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_002844 exon5 c.G627A p.G209G . . . MAP7 9053 hgsc.bcm.edu 36 6 136735458 136735458 + Splice_Site SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001198609 exon8 c.A840G p.S280S . . . SYNE1 23345 hgsc.bcm.edu 36 6 152673303 152673303 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_015293 exon4 c.C512T p.A171V . . . IGF2R 3482 hgsc.bcm.edu 36 6 160375509 160375509 + Missense_Mutation SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture Sanger_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_000876 exon10 c.T1280C p.M427T . . . PLG 5340 hgsc.bcm.edu 36 6 161057723 161057723 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_000301 exon7 c.G725A p.R242Q . . . FAM120B 84498 hgsc.bcm.edu 36 6 170468617 170468617 + Nonsense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_032448 exon2 c.C214T p.R72X . . . ZSCAN16 80345 hgsc.bcm.edu 36 6 28205614 28205614 + Missense_Mutation SNP A A C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_025231 exon4 c.A954C p.K318N . . . SCAND3 114821 hgsc.bcm.edu 36 6 28651495 28651495 + Silent SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_052923 exon3 c.A966G p.G322G . . . IBTK 25998 hgsc.bcm.edu 36 6 82990582 82990582 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_015525 exon7 c.G865A p.V289I . . . RNGTT 8732 hgsc.bcm.edu 36 6 89610844 89610844 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_003800 exon11 c.C1220A p.P407Q . . . CUL1 8454 hgsc.bcm.edu 36 7 148125840 148125841 + Frame_Shift_Ins INS - - T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 - - - T - - Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_003592 exon18 c.1903_1904insT p.I635fs . . . SLC12A9 56996 hgsc.bcm.edu 36 7 100292591 100292591 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_020246 exon5 c.C614T p.A205V . . . KCND2 3751 hgsc.bcm.edu 36 7 120173199 120173199 + Nonsense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_012281 exon5 c.C1597T p.R533X KCND2,central_nervous_system,brain,Substitution - Nonsense,0 . . LRGUK 136332 hgsc.bcm.edu 36 7 133462760 133462760 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_144648 exon1 c.G100T p.A34S . . . BRAF 673 hgsc.bcm.edu 36 7 140099605 140099605 + Missense_Mutation SNP A A T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_004333 exon15 c.T1799A p.V600E BRAF,pituitary,NS,Substitution - Missense,0 . . TRPV6 55503 hgsc.bcm.edu 36 7 142281415 142281415 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_018646 exon13 c.G1696A p.A566T . . . SKAP2 8935 hgsc.bcm.edu 36 7 26733036 26733036 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_003930 exon7 c.G584A p.R195H . . . BMPER 168667 hgsc.bcm.edu 36 7 34064263 34064263 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_133468 exon10 c.G995A p.R332H . . . PKD1L1 168507 hgsc.bcm.edu 36 7 47815635 47815635 + Silent SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_138295 exon51 c.C7647T p.G2549G . . . RABGEF1 27342 hgsc.bcm.edu 36 7 65911625 65911625 + Silent SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_014504 exon9 c.A1395G p.Q465Q . . . AUTS2 26053 hgsc.bcm.edu 36 7 69002235 69002235 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_015570 exon2 c.C337T p.R113C . . . CROT 54677 hgsc.bcm.edu 36 7 86828801 86828801 + Missense_Mutation SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_021151 exon5 c.A400G p.N134D . . . ZNF804B 219578 hgsc.bcm.edu 36 7 88685419 88685419 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_181646 exon2 c.G123T p.K41N . . . AKAP9 10142 hgsc.bcm.edu 36 7 91528612 91528612 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_147185 exon23 c.C5704T p.R1902C . . . CSMD3 114788 hgsc.bcm.edu 36 8 114100563 114100563 + Silent SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_198123 exon6 c.A939G p.P313P . . . COL14A1 7373 hgsc.bcm.edu 36 8 121291287 121291287 + Missense_Mutation SNP C C A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_021110 exon12 c.C1433A p.P478H . . . MTBP 27085 hgsc.bcm.edu 36 8 121536887 121536887 + Silent SNP T T G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_022045 exon6 c.T516G p.L172L . . . ADCY8 114 hgsc.bcm.edu 36 8 131862268 131862268 + Silent SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001115 exon18 c.C3306T p.G1102G . . . TRAPPC9 83696 hgsc.bcm.edu 36 8 141439470 141439470 + Silent SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001160372 exon9 c.G1356A p.T452T . . . ADAM28 10863 hgsc.bcm.edu 36 8 24263358 24263358 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_014265 exon19 c.C2027T p.A676V . . . ASH2L 9070 hgsc.bcm.edu 36 8 38097821 38097821 + Nonsense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001105214 exon10 c.C880T p.R294X . . . EYA1 2138 hgsc.bcm.edu 36 8 72291607 72291607 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_172060 exon12 c.G1135A p.A379T . . . CRISPLD1 83690 hgsc.bcm.edu 36 8 76092155 76092155 + Missense_Mutation SNP A A C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_031461 exon10 c.A1042C p.N348H . . . RNF20 56254 hgsc.bcm.edu 36 9 103349055 103349055 + Nonsense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_019592 exon7 c.G880T p.E294X . . . TXNDC8 255220 hgsc.bcm.edu 36 9 112136354 112136354 + Missense_Mutation SNP C C A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001003936 exon2 c.G92T p.R31L . . . ANGPTL2 23452 hgsc.bcm.edu 36 9 128893931 128893931 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_012098 exon4 c.G1121A p.G374D . . . KIAA1539 80256 hgsc.bcm.edu 36 9 35096314 35096314 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_025182 exon6 c.G1153A p.V385I . . . TRPM3 80036 hgsc.bcm.edu 36 9 72420750 72420750 + Missense_Mutation SNP T T C novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001007471 exon17 c.A2384G p.D795G . . . GNA14 9630 hgsc.bcm.edu 36 9 79236145 79236145 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_004297 exon4 c.G505A p.V169M . . . SLC28A3 64078 hgsc.bcm.edu 36 9 86090269 86090269 + Nonsense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_022127 exon15 c.C1458A p.C486X . . . FANCC 2176 hgsc.bcm.edu 36 9 97051273 97051273 + Missense_Mutation SNP A A G novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_000136 exon2 c.T122C p.F41S . . . PTCH1 5727 hgsc.bcm.edu 36 9 97278213 97278213 + Missense_Mutation SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001083605 exon12 c.C1199T p.T400M . . . ACTRT1 139741 hgsc.bcm.edu 36 X 127012746 127012746 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_138289 exon1 c.G1121A p.R374K . . . RP13-102H20.1 158763 hgsc.bcm.edu 36 X 130043378 130043378 + Missense_Mutation SNP C C T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_144967 exon2 c.C58T p.P20S . . . SH3KBP1 30011 hgsc.bcm.edu 36 X 19623748 19623748 + Silent SNP G G A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_001024666 exon4 c.C312T p.N104N . . . OTC 5009 hgsc.bcm.edu 36 X 38152955 38152955 + Missense_Mutation SNP C C A novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_000531 exon7 c.C680A p.A227D . . . GPR174 84636 hgsc.bcm.edu 36 X 78313206 78313206 + Missense_Mutation SNP G G T novel unknown TCGA-AA-3543-01A-01W-0833-10 TCGA-AA-3543-10A-01W-0833-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 8078c4d0-3e44-4a06-b9f1-e593a44019f2 53cffa7e-0848-47eb-a164-042778b97f43 NM_032553 exon1 c.G46T p.D16Y . . .