Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
CPN1	1369	broad.mit.edu	36	10	101815101	101815101	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001308	exon4	c.G593A	p.R198Q	.	.	.
MTG1	92170	broad.mit.edu	36	10	135083079	135083079	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138384	exon10	c.G858A	p.T286T	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26497652	26497652	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017433	exon28	c.C3117T	p.F1039F	.	.	.
MYPN	84665	broad.mit.edu	36	10	69551851	69551851	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032578	exon2	c.C650T	p.A217V	.	.	.
ATM	472	broad.mit.edu	36	11	107668585	107668585	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000051	exon30	c.G4466A	p.R1489H	.	.	.
IGSF9B	22997	broad.mit.edu	36	11	133294862	133294862	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014987	exon18	c.C3968T	p.T1323M	.	.	.
IGSF9B	22997	broad.mit.edu	36	11	133300924	133300924	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014987	exon14	c.C1954T	p.R652C	.	.	.
GAS2	2620	broad.mit.edu	36	11	22715846	22715846	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001143830	exon5	c.A429G	p.R143R	.	.	.
OR8K1	390157	broad.mit.edu	36	11	55870344	55870344	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001002907	exon1	c.C254T	p.P85L	.	.	.
CATSPER1	117144	broad.mit.edu	36	11	65549315	65549315	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_053054	exon1	c.G1112A	p.R371H	.	.	.
NLRP10	338322	broad.mit.edu	36	11	7938079	7938079	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_176821	exon2	c.G1656T	p.M552I	.	.	.
TBX5	6910	broad.mit.edu	36	12	113326049	113326049	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000192	exon2	c.C38T	p.T13M	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35T	p.G12V	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
KRT82	3888	broad.mit.edu	36	12	51080125	51080125	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033033	exon5	c.G853A	p.V285M	.	.	.
LRP1	4035	broad.mit.edu	36	12	55857138	55857138	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002332	exon25	c.G4039A	p.E1347K	.	.	.
CHD4	1108	broad.mit.edu	36	12	6571844	6571844	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001273	exon19	c.G2924A	p.R975H	.	.	.
ATP12A	479	broad.mit.edu	36	13	24166673	24166673	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001185085	exon11	c.G1487A	p.R496H	.	.	.
KCNRG	283518	broad.mit.edu	36	13	49487661	49487661	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_199464	exon1	c.G31A	p.V11M	.	.	.
KCNRG	283518	broad.mit.edu	36	13	49487806	49487806	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_199464	exon1	c.G176T	p.S59I	.	.	.
AKT1	207	broad.mit.edu	36	14	104311303	104311303	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001014432	exon9	c.C693T	p.N231N	.	.	.
TM9SF1	10548	broad.mit.edu	36	14	23731226	23731226	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001014842	exon4	c.C1144G	p.L382V	.	.	.
PRIMA1	145270	broad.mit.edu	36	14	93257644	93257644	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178013	exon5	c.A361C	p.K121Q	.	.	.
MYO9A	4649	broad.mit.edu	36	15	69906326	69906326	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006901	exon42	c.G7296A	p.S2432S	.	.	.
IGF1R	3480	broad.mit.edu	36	15	97276780	97276780	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000875	exon9	c.G1893T	p.W631C	.	.	.
LOC81691	81691	broad.mit.edu	36	16	20733822	20733822	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199053	exon4	c.A324G	p.L108L	.	.	.
TRIM72	493829	broad.mit.edu	36	16	31138170	31138170	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008274	exon4	c.C546T	p.F182F	.	.	.
CNGB1	1258	broad.mit.edu	36	16	56479302	56479302	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001297	exon32	c.C3420T	p.A1140A	.	.	.
RBFOX1	54715	broad.mit.edu	36	16	7508386	7508386	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145893	exon2	c.C324T	p.T108T	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9765411	9765411	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001134408	exon13	c.C3491T	p.T1164M	.	.	.
MYH8	4626	broad.mit.edu	36	17	10256494	10256494	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002472	exon14	c.G1334A	p.R445H	.	.	.
FGF11	2256	broad.mit.edu	36	17	7287151	7287151	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004112	exon5	c.G640C	p.V214L	.	.	.
SMAD4	4089	broad.mit.edu	36	18	46858704	46858704	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005359	exon12	c.G1528A	p.G510R	.	.	.
CRLF1	9244	broad.mit.edu	36	19	18565893	18565893	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004750	exon8	c.A1237G	p.R413G	.	.	.
NANOS2	339345	broad.mit.edu	36	19	51109541	51109541	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001029861	exon1	c.C251T	p.P84L	.	.	.
TSKS	60385	broad.mit.edu	36	19	54943235	54943235	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021733	exon4	c.C498T	p.S166S	.	.	.
SHANK1	50944	broad.mit.edu	36	19	55857500	55857500	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016148	exon23	c.C6020T	p.S2007L	.	.	.
AHCYL1	10768	broad.mit.edu	36	1	110356539	110356539	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006621	exon4	c.G409A	p.A137T	.	.	.
HRNR	388697	broad.mit.edu	36	1	150454175	150454175	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001009931	exon3	c.G6554A	p.R2185H	.	.	.
XPR1	9213	broad.mit.edu	36	1	179041843	179041843	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135669	exon5	c.G470A	p.R157Q	.	.	.
NFIA	4774	broad.mit.edu	36	1	61326451	61326451	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001145512	exon3	c.C205T	p.R69X	.	.	.
MST1P9	11223	broad.mit.edu	36	1	16957317	16957317	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C20orf160	140706	broad.mit.edu	36	20	30069340	30069340	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080625	exon3	c.C275A	p.T92N	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40833583	40833583	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133170	exon5	c.G590A	p.R197Q	.	.	.
KCNG1	3755	broad.mit.edu	36	20	49059822	49059822	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002237	exon2	c.G461A	p.W154X	.	.	.
BRWD1	54014	broad.mit.edu	36	21	39504650	39504650	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033656	exon35	c.G3976A	p.V1326M	.	.	.
TRABD	80305	broad.mit.edu	36	22	48978424	48978426	+	In_Frame_Del	DEL	GAT	-	-	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	GAT	GAT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025204	exon8	c.717_719del	p.239_240del	.	.	.
SAP130	79595	broad.mit.edu	36	2	128490563	128490563	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145928	exon4	c.G455A	p.R152H	.	.	.
TPO	7173	broad.mit.edu	36	2	1486816	1486816	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175719	exon13	c.G2305A	p.A769T	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215547822	215547822	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173076	exon35	c.C5393T	p.P1798L	.	.	.
SLC23A3	151295	broad.mit.edu	36	2	219734898	219734898	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144890	exon12	c.G1834A	p.E612K	.	.	.
PRR21	643905	broad.mit.edu	36	2	240630341	240630341	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080835	exon1	c.G732T	p.T244T	.	.	.
KIF1A	547	broad.mit.edu	36	2	241346496	241346496	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004321	exon25	c.G2509A	p.G837R	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50578055	50578055	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135659	exon15	c.C2919A	p.F973L	.	.	.
IQCB1	9657	broad.mit.edu	36	3	123030113	123030114	+	Missense_Mutation	DNP	TA	CC	CC	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	TA	TA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001023570	exon4	c.156_157GG	.	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131772657	131772657	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001102608	exon6	c.C2707T	p.R903W	.	.	.
CLDN18	51208	broad.mit.edu	36	3	139211917	139211917	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016369	exon1	c.G160A	p.V54M	.	.	.
RARB	5915	broad.mit.edu	36	3	25517770	25517770	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000965	exon3	c.C400G	p.Q134E	.	.	.
C3orf39	84892	broad.mit.edu	36	3	43097255	43097255	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032806	exon2	c.C673T	p.R225W	.	.	.
IL17RD	54756	broad.mit.edu	36	3	57106719	57106719	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017563	exon12	c.G2052A	p.T684T	.	.	.
ANK2	287	broad.mit.edu	36	4	114479843	114479843	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020977	exon32	c.C3809A	p.P1270H	.	.	.
FAT4	79633	broad.mit.edu	36	4	126457632	126457632	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024582	exon1	c.G616C	p.G206R	.	.	.
FAT4	79633	broad.mit.edu	36	4	126457768	126457768	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024582	exon1	c.G752A	p.G251D	.	.	.
FAT4	79633	broad.mit.edu	36	4	126547549	126547549	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024582	exon3	c.C5372A	p.P1791Q	.	.	.
CCKAR	886	broad.mit.edu	36	4	26100192	26100192	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000730	exon2	c.C125T	p.A42V	.	.	.
TMPRSS11A	339967	broad.mit.edu	36	4	68467384	68467384	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182606	exon8	c.C863T	p.S288L	.	.	.
HELQ	113510	broad.mit.edu	36	4	84561902	84561902	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133636	exon15	c.G2787A	p.K929K	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85864614	85864614	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014991	exon46	c.C7430A	p.A2477D	.	.	.
WDR36	134430	broad.mit.edu	36	5	110455927	110455927	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139281	exon1	c.G42T	p.Q14H	.	.	.
APC	324	broad.mit.edu	36	5	112203595	112203595	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C4351T	p.Q1451X	 APC,large_intestine,NS,Substitution - Nonsense,0 	.	.
ACSL6	23305	broad.mit.edu	36	5	131353048	131353048	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001009185	exon5	c.A503T	p.K168I	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13892485	13892485	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001369	exon35	c.A5862G	p.V1954V	.	.	.
BTNL8	79908	broad.mit.edu	36	5	180268204	180268204	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024850	exon2	c.T62G	p.V21G	.	.	.
RNF182	221687	broad.mit.edu	36	6	14085755	14085755	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001165032	exon4	c.G426A	p.P142P	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159573626	159573626	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032532	exon11	c.C2092T	p.R698W	.	.	.
THBS2	7058	broad.mit.edu	36	6	169370237	169370237	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003247	exon16	c.G2324A	p.R775H	.	.	.
AASS	10157	broad.mit.edu	36	7	121542449	121542449	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005763	exon9	c.C958T	p.L320L	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21642057	21642057	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003777	exon26	c.T4559C	p.F1520S	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21780085	21780085	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003777	exon56	c.C9301T	p.R3101X	.	.	.
AUTS2	26053	broad.mit.edu	36	7	69869181	69869181	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015570	exon9	c.G1614A	p.T538T	.	.	.
C7orf63	79846	broad.mit.edu	36	7	89777360	89777360	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001160138	exon23	c.C2644T	p.R882X	.	.	.
SLC20A2	6575	broad.mit.edu	36	8	42414248	42414248	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006749	exon8	c.A939G	p.R313R	.	.	.
COL27A1	85301	broad.mit.edu	36	9	115971080	115971080	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032888	exon3	c.G1424A	p.R475H	.	.	.
C5	727	broad.mit.edu	36	9	122784809	122784809	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001735	exon26	c.A3335G	p.Q1112R	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79010728	79010728	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001018037	exon5	c.C298A	p.P100T	.	.	.
FAM75D1	389763	broad.mit.edu	36	9	83799409	83799409	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001670	exon4	c.G4204T	p.A1402S	.	.	.
FAM22F	54754	broad.mit.edu	36	9	96122614	96122614	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017561	exon5	c.G1065C	p.K355N	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63328508	63328508	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152424	exon2	c.G1384T	p.E462X	.	.	.
NAP1L3	4675	broad.mit.edu	36	X	92814294	92814294	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004538	exon1	c.A666T	p.E222D	.	.	.