Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
MLLT10	8028	hgsc.bcm.edu	36	10	22002457	22002458	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004641	exon11	c.1224_1225insG	p.E408fs	.	.	.
NPM3	10360	hgsc.bcm.edu	36	10	103533115	103533115	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006993	exon1	c.C23T	p.A8V	.	.	.
GBF1	8729	hgsc.bcm.edu	36	10	104132045	104132045	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001199378	exon40	c.C5533T	p.R1845C	.	.	.
SORCS1	114815	hgsc.bcm.edu	36	10	108429073	108429073	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_052918	exon12	c.A1671G	p.I557M	.	.	.
PNLIPRP1	5407	hgsc.bcm.edu	36	10	118347348	118347348	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006229	exon7	c.C593T	p.A198V	.	.	.
RAB11FIP2	22841	hgsc.bcm.edu	36	10	119789714	119789714	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014904	exon2	c.A706G	p.M236V	.	.	.
UPF2	26019	hgsc.bcm.edu	36	10	12030449	12030449	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_080599	exon16	c.A3099T	p.E1033D	.	.	.
MKI67	4288	hgsc.bcm.edu	36	10	129791801	129791801	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001145966	exon12	c.G7213T	p.A2405S	.	.	.
FAM107B	83641	hgsc.bcm.edu	36	10	14603268	14603268	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_031453	exon5	c.C848A	p.A283D	.	.	.
SLC39A12	221074	hgsc.bcm.edu	36	10	18290626	18290626	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001145195	exon3	c.T372A	p.H124Q	.	.	.
SLC39A12	221074	hgsc.bcm.edu	36	10	18316512	18316512	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001145195	exon7	c.C1195T	p.L399F	.	.	.
THNSL1	79896	hgsc.bcm.edu	36	10	25354173	25354173	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_024838	exon3	c.C2015A	p.A672E	.	.	.
ACBD5	91452	hgsc.bcm.edu	36	10	27533446	27533446	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_145698	exon12	c.G1494A	p.V498V	.	.	.
MPP7	143098	hgsc.bcm.edu	36	10	28387495	28387495	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_173496	exon17	c.A1342T	p.S448C	.	.	.
ANK3	288	hgsc.bcm.edu	36	10	61489689	61489689	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001149	exon17	c.A2240G	p.Y747C	.	.	.
ZNF365	22891	hgsc.bcm.edu	36	10	63806084	63806084	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_199451	exon2	c.C126A	p.S42S	.	.	.
DDX21	9188	hgsc.bcm.edu	36	10	70412464	70412464	+	Missense_Mutation	SNP	C	C	T	rs61755356	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004728	exon15	c.C2242T	p.R748W	.	.	.
LRRC20	55222	hgsc.bcm.edu	36	10	71770410	71770410	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_207119	exon3	c.G137A	p.R46Q	.	.	.
ADAMTS14	140766	hgsc.bcm.edu	36	10	72181956	72181956	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_080722	exon18	c.G2696A	p.R899Q	.	.	.
ITIH5	80760	hgsc.bcm.edu	36	10	7648134	7648134	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_030569	exon13	c.G2392A	p.V798I	.	.	.
IFIT3	3437	hgsc.bcm.edu	36	10	91089414	91089414	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001549	exon2	c.C1022T	p.T341M	.	.	.
CPEB3	22849	hgsc.bcm.edu	36	10	93802096	93802096	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014912	exon10	c.G1950A	p.P650P	.	.	.
TLL2	7093	hgsc.bcm.edu	36	10	98172346	98172346	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_012465	exon6	c.G767A	p.R256Q	.	.	.
NEBL	10529	hgsc.bcm.edu	36	10	21148388	21148389	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006393	exon20	c.2025_2026del	p.675_676del	.	.	.
ARHGAP20	57569	hgsc.bcm.edu	36	11	109956704	109956704	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_020809	exon16	c.C2176A	p.L726I	.	.	.
QSK	23387	hgsc.bcm.edu	36	11	116249864	116249864	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_025164	exon12	c.C1372T	p.Q458X	.	.	.
AMICA1	120425	hgsc.bcm.edu	36	11	117581827	117581827	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_153206	exon4	c.T484A	p.F162I	.	.	.
MLL	4297	hgsc.bcm.edu	36	11	117897298	117897298	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005933	exon35	c.C11590T	p.R3864C	.	.	.
HINFP	25988	hgsc.bcm.edu	36	11	118508638	118508638	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015517	exon8	c.G812A	p.R271H	.	.	.
SIAE	54414	hgsc.bcm.edu	36	11	124012254	124012254	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_170601	exon10	c.G1375A	p.V459I	.	.	.
CDON	50937	hgsc.bcm.edu	36	11	125353467	125353467	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_016952	exon18	c.G3298A	p.V1100M	.	.	.
KCNJ1	3758	hgsc.bcm.edu	36	11	128214798	128214798	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_153765	exon3	c.G551A	p.R184Q	.	.	.
NAV2	89797	hgsc.bcm.edu	36	11	19962322	19962322	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001111018	exon11	c.G2529A	p.R843R	.	.	.
BDNF	627	hgsc.bcm.edu	36	11	27636208	27636208	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001143805	exon2	c.G480A	p.S160S	.	.	.
CARS	833	hgsc.bcm.edu	36	11	2980372	2980372	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001014437	exon21	c.C2252T	p.A751V	.	.	.
TSPAN18	90139	hgsc.bcm.edu	36	11	44904838	44904838	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_130783	exon8	c.A653G	p.Y218C	.	.	.
PHF21A	51317	hgsc.bcm.edu	36	11	45949427	45949427	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001101802	exon7	c.C428T	p.A143V	.	.	.
MADD	8567	hgsc.bcm.edu	36	11	47263134	47263134	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003682	exon13	c.G2224A	p.V742M	.	.	.
MADD	8567	hgsc.bcm.edu	36	11	47263200	47263200	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003682	exon13	c.C2290T	p.R764C	.	.	.
MADD	8567	hgsc.bcm.edu	36	11	47302614	47302614	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003682	exon33	c.C4632T	p.G1544G	.	.	.
OR5F1	338674	hgsc.bcm.edu	36	11	55518456	55518456	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003697	exon1	c.A222G	p.S74S	.	.	.
OR5T2	219464	hgsc.bcm.edu	36	11	55756334	55756334	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001004746	exon1	c.A904G	p.S302G	.	.	.
OR5AP2	338675	hgsc.bcm.edu	36	11	56166323	56166323	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001002925	exon1	c.A169G	p.I57V	.	.	.
C11orf79	54949	hgsc.bcm.edu	36	11	60962121	60962121	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_017841	exon3	c.C330T	p.N110N	.	.	.
SLC22A8	9376	hgsc.bcm.edu	36	11	62538895	62538895	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001184732	exon2	c.C112T	p.Q38X	.	.	.
SLC22A25	387601	hgsc.bcm.edu	36	11	62753490	62753490	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_199352	exon1	c.G211T	p.A71S	.	.	.
OTUB1	55611	hgsc.bcm.edu	36	11	63520639	63520639	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_017670	exon4	c.G281A	p.R94Q	.	.	.
CDC42BPG	55561	hgsc.bcm.edu	36	11	64351170	64351170	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_017525	exon34	c.G4317A	p.P1439P	.	.	.
TRIM3	10612	hgsc.bcm.edu	36	11	6436066	6436066	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006458	exon4	c.G168A	p.T56T	.	.	.
KAT5	10524	hgsc.bcm.edu	36	11	65242755	65242755	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_182710	exon11	c.G1383A	p.G461G	.	.	.
AIP	9049	hgsc.bcm.edu	36	11	67007257	67007257	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003977	exon1	c.A52G	p.I18V	.	.	.
NADSYN1	55191	hgsc.bcm.edu	36	11	70869518	70869518	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018161	exon11	c.G943A	p.A315T	.	.	.
LRTOMT	220074	hgsc.bcm.edu	36	11	71483685	71483685	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001145307	exon5	c.G332T	p.G111V	.	.	.
SLCO2B1	11309	hgsc.bcm.edu	36	11	74582225	74582225	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001145212	exon6	c.G958A	p.G320S	.	.	.
DGAT2	84649	hgsc.bcm.edu	36	11	75185139	75185139	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_032564	exon5	c.A548C	p.K183T	.	.	.
ACER3	55331	hgsc.bcm.edu	36	11	76374404	76374404	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018367	exon5	c.A390G	p.L130L	.	.	.
PAK1	5058	hgsc.bcm.edu	36	11	76742273	76742273	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002576	exon8	c.C792T	p.G264G	.	.	.
INTS4	92105	hgsc.bcm.edu	36	11	77267818	77267818	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_033547	exon23	c.C2717T	p.A906V	.	.	.
ST5	6764	hgsc.bcm.edu	36	11	8689019	8689019	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005418	exon14	c.G2301A	p.M767I	.	.	.
SCUBE2	57758	hgsc.bcm.edu	36	11	9005567	9005567	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_020974	exon19	c.G2450A	p.R817H	.	.	.
ANKRD49	54851	hgsc.bcm.edu	36	11	93871096	93871096	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_017704	exon3	c.C470T	p.A157V	.	.	.
NDUFC2	4718	hgsc.bcm.edu	36	11	77461795	77461795	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004549	exon2	c.207delT	p.F69fs	.	.	.
UTP20	27340	hgsc.bcm.edu	36	12	100199076	100199076	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014503	exon2	c.C97T	p.R33W	.	.	.
CRY1	1407	hgsc.bcm.edu	36	12	105910904	105910904	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004075	exon11	c.C1626T	p.G542G	.	.	.
BTBD11	121551	hgsc.bcm.edu	36	12	106438492	106438492	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001018072	exon2	c.A1234G	p.T412A	.	.	.
MAGOHB	55110	hgsc.bcm.edu	36	12	10651737	10651737	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018048	exon4	c.T330C	p.I110I	.	.	.
BTBD11	121551	hgsc.bcm.edu	36	12	106553273	106553273	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001017523	exon10	c.A1324G	p.K442E	.	.	.
PWP1	11137	hgsc.bcm.edu	36	12	106606602	106606602	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_007062	exon3	c.G212A	p.R71H	.	.	.
UBE3B	89910	hgsc.bcm.edu	36	12	108443641	108443641	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_130466	exon21	c.G2266A	p.D756N	.	.	.
ATP2A2	488	hgsc.bcm.edu	36	12	109263181	109263181	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_170665	exon14	c.T2096A	p.M699K	.	.	.
SDS	10993	hgsc.bcm.edu	36	12	112319387	112319387	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006843	exon6	c.G619A	p.A207T	.	.	.
FBXW8	26259	hgsc.bcm.edu	36	12	115907468	115907468	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_153348	exon6	c.G910A	p.A304T	.	.	.
MLEC	9761	hgsc.bcm.edu	36	12	119616348	119616348	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014730	exon2	c.C307T	p.R103W	.	.	.
VPS33A	65082	hgsc.bcm.edu	36	12	121314130	121314130	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_022916	exon3	c.A238T	p.I80F	.	.	.
DHX37	57647	hgsc.bcm.edu	36	12	124033121	124033121	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_032656	exon3	c.G278A	p.R93Q	.	.	.
DUSP16	80824	hgsc.bcm.edu	36	12	12564120	12564120	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_030640	exon3	c.C310A	p.L104I	.	.	.
EP400	57634	hgsc.bcm.edu	36	12	131074330	131074330	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015409	exon24	c.C4743T	p.R1581R	.	.	.
POLE	5426	hgsc.bcm.edu	36	12	131712323	131712323	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006231	exon47	c.C6638T	p.A2213V	.	.	.
POLE	5426	hgsc.bcm.edu	36	12	131747664	131747664	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006231	exon25	c.G3024T	p.K1008N	.	.	.
POLE	5426	hgsc.bcm.edu	36	12	131754197	131754197	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006231	exon20	c.C2284T	p.R762W	.	.	.
CHFR	55743	hgsc.bcm.edu	36	12	131945875	131945875	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018223	exon8	c.G676A	p.D226N	.	.	.
ERC1	23085	hgsc.bcm.edu	36	12	1469612	1469612	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_178039	exon18	c.C3222T	p.P1074P	.	.	.
SLC6A13	6540	hgsc.bcm.edu	36	12	203486	203486	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001190997	exon9	c.G968A	p.R323Q	.	.	.
ABCD2	225	hgsc.bcm.edu	36	12	38299333	38299333	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005164	exon1	c.A352G	p.T118A	.	.	.
CCND2	894	hgsc.bcm.edu	36	12	4279434	4279434	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001759	exon5	c.T868C	p.X290R	.	.	.
KRT79	338785	hgsc.bcm.edu	36	12	51503164	51503164	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_175834	exon7	c.C1270T	p.R424W	.	.	.
SP1	6667	hgsc.bcm.edu	36	12	52063491	52063491	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_138473	exon3	c.G1493A	p.S498N	.	.	.
CALCOCO1	57658	hgsc.bcm.edu	36	12	52405229	52405229	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_020898	exon2	c.G65A	p.R22Q	.	.	.
PAN2	9924	hgsc.bcm.edu	36	12	55005449	55005449	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001166279	exon9	c.T1416C	p.T472T	.	.	.
AGAP2	116986	hgsc.bcm.edu	36	12	56410618	56410618	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014770	exon12	c.G1347A	p.L449L	.	.	.
SLC16A7	9194	hgsc.bcm.edu	36	12	58455176	58455176	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004731	exon4	c.A833T	p.D278V	.	.	.
LEMD3	23592	hgsc.bcm.edu	36	12	63898657	63898657	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014319	exon4	c.G1686A	p.A562A	.	.	.
CLSTN3	9746	hgsc.bcm.edu	36	12	7186784	7186784	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014718	exon11	c.C1593T	p.S531S	.	.	.
CD163L1	283316	hgsc.bcm.edu	36	12	7477244	7477244	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_174941	exon3	c.C438T	p.N146N	.	.	.
HAL	3034	hgsc.bcm.edu	36	12	94913622	94913622	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002108	exon2	c.C198T	p.N66N	.	.	.
CLEC2D	29121	hgsc.bcm.edu	36	12	9731866	9731866	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001197318	exon3	c.G274A	p.D92N	.	.	.
DCN	1634	hgsc.bcm.edu	36	12	90096435	90096437	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	AGA	AGA	AGA	-	AGA	AGA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001920	exon2	c.24_26del	p.8_9del	.	.	.
KLRA1	10748	hgsc.bcm.edu	36	12	10641974	10641974	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	.	.	.	.	.	.	.
ANKRD10	55608	hgsc.bcm.edu	36	13	110330173	110330173	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_017664	exon6	c.G1075A	p.A359T	.	.	.
LATS2	26524	hgsc.bcm.edu	36	13	20453628	20453628	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014572	exon6	c.C2642T	p.A881V	.	.	.
SACS	26278	hgsc.bcm.edu	36	13	22830526	22830526	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014363	exon7	c.T552C	p.P184P	.	.	.
PABPC3	5042	hgsc.bcm.edu	36	13	24569836	24569836	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_030979	exon1	c.G1500A	p.V500V	.	.	.
TRPC4	7223	hgsc.bcm.edu	36	13	37123439	37123439	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001135957	exon8	c.A2042C	p.K681T	.	.	.
KIAA0564	23078	hgsc.bcm.edu	36	13	41338142	41338142	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015058	exon11	c.C1243T	p.P415S	.	.	.
AKAP11	11215	hgsc.bcm.edu	36	13	41775913	41775913	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_016248	exon8	c.C5031T	p.I1677I	.	.	.
ZC3H13	23091	hgsc.bcm.edu	36	13	45441163	45441163	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015070	exon14	c.G3517A	p.V1173M	.	.	.
CYSLTR2	57105	hgsc.bcm.edu	36	13	48179360	48179360	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_020377	exon1	c.C406T	p.R136C	.	.	.
TDRD3	81550	hgsc.bcm.edu	36	13	60001155	60001155	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001146071	exon11	c.C1516T	p.R506X	.	.	.
MYCBP2	23077	hgsc.bcm.edu	36	13	76638559	76638559	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015057	exon41	c.A6246G	p.K2082K	.	.	.
MYCBP2	23077	hgsc.bcm.edu	36	13	76740068	76740068	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015057	exon8	c.T1266C	p.Y422Y	.	.	.
DZIP1	22873	hgsc.bcm.edu	36	13	95037926	95037926	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014934	exon19	c.G2029A	p.A677T	.	.	.
CNIH	10175	hgsc.bcm.edu	36	14	53966741	53966742	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005776	exon4	c.395_396insT	p.Y132fs	.	.	.
FLJ10357	55701	hgsc.bcm.edu	36	14	20626861	20626861	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018071	exon23	c.G4551A	p.T1517T	.	.	.
SALL2	6297	hgsc.bcm.edu	36	14	21061429	21061429	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005407	exon2	c.C2273T	p.P758L	.	.	.
PSMB5	5693	hgsc.bcm.edu	36	14	22572600	22572600	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001144932	exon2	c.G322A	p.A108T	.	.	.
DHRS1	115817	hgsc.bcm.edu	36	14	23835864	23835864	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_138452	exon3	c.C214T	p.R72X	.	.	.
NPAS3	64067	hgsc.bcm.edu	36	14	32478279	32478279	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_022123	exon1	c.G6A	p.A2A	.	.	.
PAX9	5083	hgsc.bcm.edu	36	14	36215389	36215389	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006194	exon5	c.T1007A	p.V336D	.	.	.
NIN	51199	hgsc.bcm.edu	36	14	50289084	50289084	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_182944	exon21	c.C4852T	p.L1618L	.	.	.
RTN1	6252	hgsc.bcm.edu	36	14	59282460	59282460	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_021136	exon2	c.T734A	p.V245E	.	.	.
MAP3K9	4293	hgsc.bcm.edu	36	14	70297569	70297569	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_033141	exon3	c.C904T	p.H302Y	.	.	.
C14orf148	122945	hgsc.bcm.edu	36	14	76943603	76943603	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_138791	exon3	c.C488T	p.A163V	.	.	.
NRXN3	9369	hgsc.bcm.edu	36	14	79397913	79397913	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_138970	exon6	c.G1152T	p.R384S	.	.	.
SEL1L	6400	hgsc.bcm.edu	36	14	81069811	81069811	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005065	exon1	c.C31T	p.L11L	.	.	.
TTC7B	145567	hgsc.bcm.edu	36	14	90266188	90266188	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001010854	exon5	c.C682A	p.L228I	.	.	.
KIAA1409	57578	hgsc.bcm.edu	36	14	93060086	93060086	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_020818	exon8	c.C377A	p.P126H	.	.	.
WDR25	79446	hgsc.bcm.edu	36	14	99917539	99917539	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001161476	exon2	c.C525A	p.P175P	.	.	.
PPP1R14D	54866	hgsc.bcm.edu	36	15	38907945	38907945	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001130143	exon1	c.C187T	p.R63W	.	.	.
UBR1	197131	hgsc.bcm.edu	36	15	41063447	41063447	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_174916	exon37	c.G4090A	p.A1364T	.	.	.
UBR1	197131	hgsc.bcm.edu	36	15	41122834	41122834	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_174916	exon15	c.T1720C	p.C574R	.	.	.
COPS2	9318	hgsc.bcm.edu	36	15	47207572	47207572	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004236	exon13	c.G1199A	p.G400D	.	.	.
DMXL2	23312	hgsc.bcm.edu	36	15	49578687	49578687	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015263	exon18	c.T4026C	p.P1342P	.	.	.
RNF111	54778	hgsc.bcm.edu	36	15	57155474	57155474	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_017610	exon7	c.T1716C	p.S572S	.	.	.
BNIP2	663	hgsc.bcm.edu	36	15	57748453	57748453	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004330	exon9	c.G1186A	p.V396M	.	.	.
VPS13C	54832	hgsc.bcm.edu	36	15	60029876	60029876	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_017684	exon39	c.T4440G	p.I1480M	.	.	.
ALPK3	57538	hgsc.bcm.edu	36	15	83200655	83200655	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_020778	exon6	c.C2288A	p.P763H	.	.	.
HAPLN3	145864	hgsc.bcm.edu	36	15	87225721	87225721	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_178232	exon3	c.C364T	p.R122W	.	.	.
BLM	641	hgsc.bcm.edu	36	15	89091632	89091632	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000057	exon2	c.T6A	p.A2A	.	.	.
MCTP2	55784	hgsc.bcm.edu	36	15	92784495	92784495	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018349	exon17	c.T2172C	p.P724P	.	.	.
ARRDC4	91947	hgsc.bcm.edu	36	15	96310181	96310181	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_183376	exon3	c.C427T	p.R143W	.	.	.
IGF1R	3480	hgsc.bcm.edu	36	15	97260298	97260298	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000875	exon5	c.G1172A	p.R391H	.	.	.
KIF7	374654	hgsc.bcm.edu	36	15	87978101	87978103	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	CTT	CTT	CTT	-	CTT	CTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_198525	exon12	c.2410_2412del	p.804_804del	.	.	.
PPL	5493	hgsc.bcm.edu	36	16	4884500	4884501	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002705	exon12	c.1363_1364insC	p.T455fs	.	.	.
UMOD	7369	hgsc.bcm.edu	36	16	20262865	20262865	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003361	exon6	c.C1313T	p.A438V	.	.	.
ACSM2B	348158	hgsc.bcm.edu	36	16	20456087	20456087	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001105069	exon14	c.G1728A	p.A576A	.	.	.
TMEM159	57146	hgsc.bcm.edu	36	16	21092847	21092847	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_020422	exon4	c.T281C	p.V94A	.	.	.
ARHGAP17	55114	hgsc.bcm.edu	36	16	24878789	24878789	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001006634	exon8	c.G586A	p.A196T	.	.	.
SRRM2	23524	hgsc.bcm.edu	36	16	2756150	2756150	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_016333	exon11	c.C5620T	p.R1874W	.	.	.
ZNF434	54925	hgsc.bcm.edu	36	16	3373126	3373126	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_017810	exon6	c.C1185T	p.C395C	.	.	.
BTBD12	84464	hgsc.bcm.edu	36	16	3579148	3579148	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_032444	exon12	c.C4492A	p.L1498M	.	.	.
CPNE2	221184	hgsc.bcm.edu	36	16	55713124	55713124	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_152727	exon9	c.A818G	p.K273R	.	.	.
CDH8	1006	hgsc.bcm.edu	36	16	60409055	60409055	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001796	exon7	c.G1106T	p.R369M	.	.	.
PRMT7	54496	hgsc.bcm.edu	36	16	66916199	66916199	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_019023	exon5	c.C245T	p.A82V	.	.	.
CDH1	999	hgsc.bcm.edu	36	16	67404803	67404803	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004360	exon9	c.G1224A	p.A408A	.	.	.
ZFHX3	463	hgsc.bcm.edu	36	16	71549855	71549855	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006885	exon2	c.C1691T	p.A564V	.	.	.
ADAMTS18	170692	hgsc.bcm.edu	36	16	75875387	75875387	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_199355	exon23	c.A3633C	p.K1211N	.	.	.
CREBBP	1387	hgsc.bcm.edu	36	16	3721325	3721327	+	In_Frame_Del	DEL	AGG	AGG	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	AGG	AGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004380	exon30	c.5039_5041del	p.1680_1681del	.	.	.
MYOCD	93649	hgsc.bcm.edu	36	17	12588434	12588434	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001146312	exon8	c.G927A	p.Q309Q	.	.	.
TRPV2	51393	hgsc.bcm.edu	36	17	16280852	16280852	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_016113	exon15	c.C2219T	p.A740V	.	.	.
MPRIP	23164	hgsc.bcm.edu	36	17	17024648	17024648	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_201274	exon23	c.C3048T	p.S1016S	.	.	.
PRPSAP2	5636	hgsc.bcm.edu	36	17	18772928	18772928	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002767	exon11	c.T884C	p.V295A	.	.	.
SPAG5	10615	hgsc.bcm.edu	36	17	23937631	23937631	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006461	exon5	c.T1451C	p.L484P	.	.	.
PAFAH1B1	5048	hgsc.bcm.edu	36	17	2520218	2520218	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000430	exon6	c.T411C	p.Y137Y	.	.	.
GOSR1	9527	hgsc.bcm.edu	36	17	25873505	25873505	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001007024	exon9	c.C541T	p.L181L	.	.	.
EVI2A	2123	hgsc.bcm.edu	36	17	26671569	26671569	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001003927	exon2	c.C7T	p.L3F	.	.	.
OR3A1	4994	hgsc.bcm.edu	36	17	3141933	3141933	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002550	exon1	c.C694T	p.R232C	.	.	.
AP1GBP1	11276	hgsc.bcm.edu	36	17	33004967	33004967	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_007247	exon10	c.C1229T	p.A410V	.	.	.
PGAP3	93210	hgsc.bcm.edu	36	17	35095706	35095706	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_033419	exon2	c.G274T	p.G92C	.	.	.
ZPBP2	124626	hgsc.bcm.edu	36	17	35285173	35285173	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_199321	exon7	c.A849G	p.G283G	.	.	.
MED24	9862	hgsc.bcm.edu	36	17	35436039	35436039	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001079518	exon18	c.C1842T	p.H614H	.	.	.
KRT23	25984	hgsc.bcm.edu	36	17	36335244	36335244	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015515	exon7	c.C1030T	p.R344C	.	.	.
CNTNAP1	8506	hgsc.bcm.edu	36	17	38098861	38098861	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003632	exon18	c.C2773T	p.R925C	.	.	.
PSME3	10197	hgsc.bcm.edu	36	17	38244854	38244854	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005789	exon10	c.C615T	p.T205T	.	.	.
AOC2	314	hgsc.bcm.edu	36	17	38251613	38251613	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001158	exon1	c.C1444T	p.R482W	.	.	.
NFE2L1	4779	hgsc.bcm.edu	36	17	43491463	43491463	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003204	exon6	c.G1780A	p.A594T	.	.	.
B4GALNT2	124872	hgsc.bcm.edu	36	17	44601179	44601179	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_153446	exon10	c.C1413T	p.G471G	.	.	.
ZFP3	124961	hgsc.bcm.edu	36	17	4936761	4936761	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_153018	exon2	c.G1238T	p.R413I	.	.	.
NLRP1	22861	hgsc.bcm.edu	36	17	5365678	5365678	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_033007	exon12	c.G3583A	p.A1195T	.	.	.
NLRP1	22861	hgsc.bcm.edu	36	17	5403198	5403198	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_033007	exon4	c.G1542T	p.W514C	.	.	.
KCNJ16	3773	hgsc.bcm.edu	36	17	65640929	65640929	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018658	exon5	c.C1106T	p.A369V	.	.	.
MIF4GD	57409	hgsc.bcm.edu	36	17	70777034	70777034	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_020679	exon3	c.C173T	p.T58M	.	.	.
ACAP1	9744	hgsc.bcm.edu	36	17	7192410	7192410	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014716	exon17	c.C1570T	p.P524S	.	.	.
KIAA1618	57714	hgsc.bcm.edu	36	17	75884016	75884016	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_020954	exon10	c.C1820T	p.T607M	.	.	.
CNTROB	116840	hgsc.bcm.edu	36	17	7784285	7784285	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_053051	exon9	c.G1311T	p.Q437H	.	.	.
ABR	29	hgsc.bcm.edu	36	17	941817	941817	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_021962	exon4	c.C369T	p.T123T	.	.	.
GLP2R	9340	hgsc.bcm.edu	36	17	9733697	9733697	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004246	exon13	c.G1612T	p.V538F	.	.	.
AKAP10	11216	hgsc.bcm.edu	36	17	19753137	19753140	+	Frame_Shift_Del	DEL	ACTG	ACTG	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	ACTG	ACTG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_007202	exon14	c.1929_1932del	p.643_644del	.	.	.
ZZEF1	23140	hgsc.bcm.edu	36	17	3931506	3931508	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	AAG	AAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015113	exon18	c.2740_2742del	p.914_914del	.	.	.
HRH4	59340	hgsc.bcm.edu	36	18	20310895	20310895	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001143828	exon2	c.G280T	p.E94X	.	.	.
ZNF521	25925	hgsc.bcm.edu	36	18	21184901	21184901	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015461	exon2	c.G8A	p.R3H	.	.	.
MOCOS	55034	hgsc.bcm.edu	36	18	32102612	32102612	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_017947	exon15	c.C2633A	p.P878H	.	.	.
FHOD3	80206	hgsc.bcm.edu	36	18	32552518	32552518	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_025135	exon16	c.C2734T	p.R912C	.	.	.
EPB41L3	23136	hgsc.bcm.edu	36	18	5423911	5423911	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_012307	exon7	c.A815G	p.K272R	.	.	.
ALPK2	115701	hgsc.bcm.edu	36	18	54353282	54353282	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_052947	exon5	c.C5117T	p.T1706M	.	.	.
SERPINB4	6318	hgsc.bcm.edu	36	18	59456050	59456050	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002974	exon8	c.C1056T	p.V352V	.	.	.
CDH19	28513	hgsc.bcm.edu	36	18	62323223	62323223	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_021153	exon12	c.G2125A	p.D709N	.	.	.
EMR3	84658	hgsc.bcm.edu	36	19	14619112	14619113	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_032571	exon8	c.763_764insT	p.E255_E256delinsX	.	.	.
PLD3	23646	hgsc.bcm.edu	36	19	45574470	45574471	+	Frame_Shift_Ins	INS	-	-	CT	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001031696	exon11	c.1134_1135insCT	p.L378fs	.	.	.
ZNF69	7620	hgsc.bcm.edu	36	19	11876604	11876604	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_021915	exon4	c.G350A	p.C117Y	.	.	.
ZNF791	163049	hgsc.bcm.edu	36	19	12600573	12600573	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_153358	exon4	c.A1230C	p.K410N	.	.	.
SLC35E1	79939	hgsc.bcm.edu	36	19	16525645	16525645	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_024881	exon6	c.C1078T	p.R360C	.	.	.
SLC35E1	79939	hgsc.bcm.edu	36	19	16527010	16527010	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_024881	exon5	c.G955A	p.V319I	.	.	.
RAB3A	5864	hgsc.bcm.edu	36	19	18170556	18170556	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002866	exon4	c.C451T	p.R151W	.	.	.
TMEM161A	54929	hgsc.bcm.edu	36	19	19104550	19104550	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_017814	exon4	c.C202A	p.L68I	.	.	.
ZNF101	94039	hgsc.bcm.edu	36	19	19651215	19651215	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_033204	exon4	c.G417A	p.T139T	.	.	.
PIP5K1C	23396	hgsc.bcm.edu	36	19	3612029	3612029	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001195733	exon5	c.A403G	p.T135A	.	.	.
UPK1A	11045	hgsc.bcm.edu	36	19	40849570	40849570	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_007000	exon1	c.G16A	p.A6T	.	.	.
APLP1	333	hgsc.bcm.edu	36	19	41055332	41055332	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001024807	exon7	c.C958T	p.R320C	.	.	.
ZNF585A	199704	hgsc.bcm.edu	36	19	42334729	42334729	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_199126	exon6	c.G1747A	p.E583K	.	.	.
RYR1	6261	hgsc.bcm.edu	36	19	43697536	43697536	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001042723	exon64	c.C9503T	p.T3168M	.	.	.
PAPL	390928	hgsc.bcm.edu	36	19	44283080	44283080	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001004318	exon6	c.C650T	p.A217V	.	.	.
SUPT5H	6829	hgsc.bcm.edu	36	19	44656577	44656577	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003169	exon25	c.C2627T	p.P876L	.	.	.
EGLN2	112398	hgsc.bcm.edu	36	19	46005258	46005258	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_080732	exon5	c.C1130A	p.A377D	.	.	.
CEACAM1	634	hgsc.bcm.edu	36	19	47723233	47723233	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001712	exon2	c.G224A	p.G75D	.	.	.
FOSB	2354	hgsc.bcm.edu	36	19	50665733	50665733	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001114171	exon2	c.G133A	p.A45T	.	.	.
RSHL1	81492	hgsc.bcm.edu	36	19	50995632	50995632	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_030785	exon5	c.C1828T	p.R610C	.	.	.
PRKD2	25865	hgsc.bcm.edu	36	19	51899409	51899409	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001079881	exon6	c.G746A	p.R249H	.	.	.
PPP1R15A	23645	hgsc.bcm.edu	36	19	54069830	54069830	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014330	exon2	c.G1528A	p.A510T	.	.	.
VRK3	51231	hgsc.bcm.edu	36	19	55190305	55190305	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001025778	exon7	c.C569T	p.A190V	.	.	.
ZNF528	84436	hgsc.bcm.edu	36	19	57610316	57610316	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_032423	exon7	c.G399A	p.K133K	.	.	.
ZNF83	55769	hgsc.bcm.edu	36	19	57808224	57808224	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001105552	exon4	c.G1406A	p.R469H	.	.	.
ZNF28	7576	hgsc.bcm.edu	36	19	57995275	57995275	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006969	exon4	c.T1635C	p.H545H	.	.	.
ZNF331	55422	hgsc.bcm.edu	36	19	58772607	58772607	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001079906	exon6	c.C981T	p.H327H	.	.	.
KIR3DL3	115653	hgsc.bcm.edu	36	19	59931050	59931050	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_153443	exon4	c.G517A	p.D173N	.	.	.
NLRP9	338321	hgsc.bcm.edu	36	19	60936354	60936354	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_176820	exon2	c.C655T	p.Q219X	.	.	.
NLRP4	147945	hgsc.bcm.edu	36	19	61064602	61064602	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_134444	exon4	c.C1895T	p.S632F	.	.	.
NLRP13	126204	hgsc.bcm.edu	36	19	61113883	61113883	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_176810	exon6	c.G2140A	p.A714T	.	.	.
NLRP8	126205	hgsc.bcm.edu	36	19	61158808	61158808	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_176811	exon3	c.A1572G	p.P524P	.	.	.
ZNF549	256051	hgsc.bcm.edu	36	19	62740726	62740726	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001199295	exon4	c.T542G	p.L181R	.	.	.
VAV1	7409	hgsc.bcm.edu	36	19	6808116	6808116	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005428	exon27	c.T2536C	p.X846R	.	.	.
C19orf21	126353	hgsc.bcm.edu	36	19	709324	709324	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_173481	exon2	c.T1378A	p.S460T	.	.	.
LRRC8E	80131	hgsc.bcm.edu	36	19	7870497	7870497	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_025061	exon3	c.G1090A	p.A364T	.	.	.
ZNF560	147741	hgsc.bcm.edu	36	19	9445952	9445952	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_152476	exon4	c.G80A	p.W27X	.	.	.
ZNF57	126295	hgsc.bcm.edu	36	19	2867945	2867948	+	Frame_Shift_Del	DEL	GTAC	GTAC	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	GTAC	GTAC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_173480	exon4	c.326_329del	p.109_110del	.	.	.
SORT1	6272	hgsc.bcm.edu	36	1	109680394	109680395	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002959	exon11	c.1362_1363insA	p.N454fs	.	.	.
RGS4	5999	hgsc.bcm.edu	36	1	161308846	161308847	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001102445	exon3	c.373_374insA	p.Q125fs	.	.	.
CDCP2	200008	hgsc.bcm.edu	36	1	54378258	54378259	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_201546	exon4	c.873_874insC	p.P291fs	.	.	.
C1orf183	55924	hgsc.bcm.edu	36	1	112071199	112071199	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_019099	exon2	c.C808T	p.R270X	.	.	.
TRIM33	51592	hgsc.bcm.edu	36	1	114771990	114771990	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015906	exon7	c.T1205C	p.I402T	.	.	.
AMPD1	270	hgsc.bcm.edu	36	1	115032867	115032867	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000036	exon3	c.G152A	p.R51H	.	.	.
PHGDH	26227	hgsc.bcm.edu	36	1	120078794	120078794	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006623	exon6	c.C525T	p.D175D	.	.	.
VPS45	11311	hgsc.bcm.edu	36	1	148306555	148306555	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_007259	exon1	c.C17T	p.A6V	.	.	.
C1orf54	79630	hgsc.bcm.edu	36	1	148511868	148511868	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_024579	exon1	c.C24A	p.I8I	.	.	.
TUFT1	7286	hgsc.bcm.edu	36	1	149818785	149818785	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_020127	exon11	c.G961A	p.A321T	.	.	.
SNX27	81609	hgsc.bcm.edu	36	1	149878147	149878147	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_030918	exon2	c.C471T	p.Y157Y	.	.	.
FLG	2312	hgsc.bcm.edu	36	1	150548415	150548415	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002016	exon3	c.G5571A	p.G1857G	.	.	.
FLG2	388698	hgsc.bcm.edu	36	1	150591362	150591362	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001014342	exon3	c.G5524A	p.E1842K	.	.	.
S100A7	6278	hgsc.bcm.edu	36	1	151697992	151697992	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002963	exon2	c.C122A	p.P41H	.	.	.
S100A4	6275	hgsc.bcm.edu	36	1	151782976	151782976	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002961	exon3	c.C189T	p.D63D	.	.	.
INTS3	65123	hgsc.bcm.edu	36	1	151996715	151996715	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_023015	exon10	c.G1001A	p.R334H	.	.	.
BGLAP	632	hgsc.bcm.edu	36	1	154478971	154478971	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001199662	exon5	c.C568T	p.R190X	.	.	.
BGLAP	632	hgsc.bcm.edu	36	1	154478981	154478981	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001199663	exon4	c.C382T	p.R128W	.	.	.
NES	10763	hgsc.bcm.edu	36	1	154909204	154909204	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006617	exon4	c.C1400T	p.A467V	.	.	.
COPA	1314	hgsc.bcm.edu	36	1	158535542	158535542	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004371	exon18	c.G1804T	p.A602S	.	.	.
TBX19	9095	hgsc.bcm.edu	36	1	166529068	166529068	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005149	exon3	c.C531A	p.A177A	.	.	.
FMO3	2328	hgsc.bcm.edu	36	1	169353000	169353000	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001002294	exon9	c.C1393A	p.P465T	.	.	.
RABGAP1L	9910	hgsc.bcm.edu	36	1	172514398	172514398	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014857	exon10	c.C1181T	p.A394V	.	.	.
RCC2	55920	hgsc.bcm.edu	36	1	17615703	17615703	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001136204	exon7	c.G886A	p.A296T	.	.	.
ARHGEF10L	55160	hgsc.bcm.edu	36	1	17822205	17822205	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018125	exon12	c.G1148A	p.R383H	.	.	.
ZNF648	127665	hgsc.bcm.edu	36	1	180293339	180293339	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001009992	exon2	c.C430T	p.R144X	.	.	.
RGL1	23179	hgsc.bcm.edu	36	1	182120642	182120642	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015149	exon8	c.C1003A	p.L335I	.	.	.
HMCN1	83872	hgsc.bcm.edu	36	1	184313951	184313951	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_031935	exon55	c.C8575A	p.L2859I	.	.	.
KCNT2	343450	hgsc.bcm.edu	36	1	194844045	194844045	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_198503	exon1	c.C18T	p.S6S	.	.	.
ASPM	259266	hgsc.bcm.edu	36	1	195340156	195340156	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018136	exon18	c.C4848T	p.F1616F	.	.	.
PRKCZ	5590	hgsc.bcm.edu	36	1	1976758	1976758	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002744	exon2	c.C90T	p.S30S	.	.	.
LAD1	3898	hgsc.bcm.edu	36	1	199618886	199618886	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005558	exon7	c.G1325A	p.R442H	.	.	.
NFASC	23114	hgsc.bcm.edu	36	1	203204106	203204106	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001160331	exon7	c.C846T	p.S282S	.	.	.
CNTN2	6900	hgsc.bcm.edu	36	1	203301572	203301572	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005076	exon14	c.C1728T	p.N576N	.	.	.
C4BPA	722	hgsc.bcm.edu	36	1	205381192	205381192	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000715	exon10	c.G1392A	p.A464A	.	.	.
CD55	1604	hgsc.bcm.edu	36	1	205566738	205566738	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000574	exon5	c.G597A	p.S199S	.	.	.
TRAF3IP3	80342	hgsc.bcm.edu	36	1	208000053	208000053	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_025228	exon3	c.G46A	p.A16T	.	.	.
CDA	978	hgsc.bcm.edu	36	1	20804115	20804115	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001785	exon2	c.G262A	p.A88T	.	.	.
DTL	51514	hgsc.bcm.edu	36	1	210284638	210284638	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_016448	exon3	c.A192G	p.E64E	.	.	.
CENPF	1063	hgsc.bcm.edu	36	1	212895313	212895313	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_016343	exon17	c.A8429T	p.E2810V	.	.	.
USH2A	7399	hgsc.bcm.edu	36	1	214019895	214019895	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_206933	exon55	c.G10852A	p.G3618S	.	.	.
ESRRG	2104	hgsc.bcm.edu	36	1	214804229	214804229	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_206595	exon6	c.G748A	p.D250N	.	.	.
USP48	84196	hgsc.bcm.edu	36	1	21878515	21878515	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_032236	exon27	c.T3090A	p.T1030T	.	.	.
LYST	1130	hgsc.bcm.edu	36	1	233989265	233989265	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000081	exon23	c.G6511A	p.A2171T	.	.	.
LYST	1130	hgsc.bcm.edu	36	1	234036448	234036448	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000081	exon6	c.C2611T	p.L871F	.	.	.
NID1	4811	hgsc.bcm.edu	36	1	234243468	234243468	+	Missense_Mutation	SNP	C	C	T	rs35714220	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002508	exon11	c.G2270A	p.R757H	.	.	.
CHML	1122	hgsc.bcm.edu	36	1	239864616	239864616	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001821	exon1	c.C1076T	p.A359V	.	.	.
AKT3	10000	hgsc.bcm.edu	36	1	241735231	241735231	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005465	exon13	c.C1383T	p.D461D	.	.	.
CATSPER4	378807	hgsc.bcm.edu	36	1	26400529	26400529	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_198137	exon9	c.T1297A	p.S433T	.	.	.
CCDC21	64793	hgsc.bcm.edu	36	1	26457296	26457296	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_022778	exon6	c.C1113T	p.G371G	.	.	.
SFRS4	6429	hgsc.bcm.edu	36	1	29347844	29347844	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005626	exon6	c.C1150T	p.R384X	.	.	.
MECR	51102	hgsc.bcm.edu	36	1	29415716	29415716	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001024732	exon2	c.T17A	p.I6N	.	.	.
STK40	83931	hgsc.bcm.edu	36	1	36593504	36593504	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_032017	exon6	c.G460A	p.A154T	.	.	.
C1orf174	339448	hgsc.bcm.edu	36	1	3797191	3797191	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_207356	exon3	c.C420T	p.S140S	.	.	.
ZMPSTE24	10269	hgsc.bcm.edu	36	1	40510274	40510274	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005857	exon6	c.C749T	p.T250M	.	.	.
KIAA0467	23334	hgsc.bcm.edu	36	1	43665027	43665027	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015284	exon8	c.G572A	p.G191D	.	.	.
ST3GAL3	6487	hgsc.bcm.edu	36	1	44137495	44137495	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_174964	exon8	c.G575A	p.R192Q	.	.	.
DPH2	1802	hgsc.bcm.edu	36	1	44210767	44210767	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001039589	exon5	c.C755T	p.A252V	.	.	.
TOE1	114034	hgsc.bcm.edu	36	1	45581394	45581394	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_025077	exon8	c.C966A	p.D322E	.	.	.
CYP4B1	1580	hgsc.bcm.edu	36	1	47037467	47037467	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001099772	exon1	c.A127G	p.M43V	.	.	.
NRD1	4898	hgsc.bcm.edu	36	1	52045139	52045139	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002525	exon20	c.G2229A	p.P743P	.	.	.
TMEM48	55706	hgsc.bcm.edu	36	1	54044765	54044765	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018087	exon9	c.C905A	p.P302H	.	.	.
CDCP2	200008	hgsc.bcm.edu	36	1	54378268	54378268	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_201546	exon4	c.G863A	p.R288H	.	.	.
MRPL37	51253	hgsc.bcm.edu	36	1	54454458	54454458	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_016491	exon6	c.A1047G	p.G349G	.	.	.
L1TD1	54596	hgsc.bcm.edu	36	1	62445300	62445300	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_019079	exon3	c.G412C	p.E138Q	.	.	.
IL12RB2	3595	hgsc.bcm.edu	36	1	67610746	67610746	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001559	exon11	c.A1499G	p.Y500C	.	.	.
NEGR1	257194	hgsc.bcm.edu	36	1	71849373	71849373	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_173808	exon5	c.G712A	p.G238R	.	.	.
AK5	26289	hgsc.bcm.edu	36	1	77760172	77760172	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_012093	exon12	c.G1306A	p.G436S	.	.	.
PTGFR	5737	hgsc.bcm.edu	36	1	78731304	78731304	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000959	exon2	c.A288C	p.K96N	.	.	.
CLCA1	1179	hgsc.bcm.edu	36	1	86723629	86723629	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001285	exon6	c.A751G	p.T251A	.	.	.
SLC16A4	9122	hgsc.bcm.edu	36	1	110707950	110707950	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004696	exon9	c.1425delT	p.F475fs	.	.	.
RAB3GAP2	25782	hgsc.bcm.edu	36	1	218453935	218453937	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	CTT	CTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_012414	exon3	c.188_190del	p.63_64del	.	.	.
SUSD4	55061	hgsc.bcm.edu	36	1	221603326	221603328	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	TGC	TGC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001037175	exon2	c.63_65del	p.21_22del	.	.	.
TARBP1	6894	hgsc.bcm.edu	36	1	232596150	232596152	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	TCT	TCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005646	exon27	c.4298_4300del	p.1433_1434del	.	.	.
L1TD1	54596	hgsc.bcm.edu	36	1	62448848	62448850	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	AAG	AAG	AAG	-	AAG	AAG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_019079	exon4	c.1814_1816del	p.605_606del	.	.	.
LPPR4	9890	hgsc.bcm.edu	36	1	99545129	99545130	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014839	exon7	c.2267_2268del	p.756_756del	.	.	.
NSFL1C	55968	hgsc.bcm.edu	36	20	1393031	1393031	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_016143	exon2	c.A146T	p.D49V	.	.	.
DUSP15	128853	hgsc.bcm.edu	36	20	29914082	29914082	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_177991	exon6	c.G79T	p.G27C	.	.	.
NCOA6	23054	hgsc.bcm.edu	36	20	32784051	32784051	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014071	exon13	c.T5972C	p.V1991A	.	.	.
PROCR	10544	hgsc.bcm.edu	36	20	33227795	33227795	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006404	exon3	c.C486A	p.T162T	.	.	.
GDF5	8200	hgsc.bcm.edu	36	20	33485273	33485273	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000557	exon2	c.C1354A	p.L452M	.	.	.
CTNNBL1	56259	hgsc.bcm.edu	36	20	35808354	35808354	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_030877	exon4	c.C397A	p.L133M	.	.	.
DHX35	60625	hgsc.bcm.edu	36	20	37083933	37083933	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001190809	exon15	c.G1441A	p.A481T	.	.	.
TTPAL	79183	hgsc.bcm.edu	36	20	42542152	42542152	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001039199	exon2	c.C99A	p.C33X	.	.	.
SLC13A3	64849	hgsc.bcm.edu	36	20	44654566	44654566	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_022829	exon6	c.G804A	p.P268P	.	.	.
SULF2	55959	hgsc.bcm.edu	36	20	45752379	45752379	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_198596	exon5	c.C635A	p.P212Q	.	.	.
ZFP64	55734	hgsc.bcm.edu	36	20	50210211	50210211	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018197	exon5	c.G621A	p.T207T	.	.	.
CDS2	8760	hgsc.bcm.edu	36	20	5118828	5118828	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003818	exon13	c.G1286A	p.R429Q	.	.	.
PLCB4	5332	hgsc.bcm.edu	36	20	9352561	9352561	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000933	exon24	c.A2450G	p.N817S	.	.	.
NCOA6	23054	hgsc.bcm.edu	36	20	32793376	32793378	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	CTT	CTT	CTT	-	CTT	CTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014071	exon11	c.4343_4345del	p.1448_1449del	.	.	.
BTG3	10950	hgsc.bcm.edu	36	21	17888465	17888466	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006806	exon5	c.576_577insA	p.K192fs	.	.	.
ITSN1	6453	hgsc.bcm.edu	36	21	34029322	34029322	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001001132	exon5	c.G289A	p.A97T	.	.	.
DOPEY2	9980	hgsc.bcm.edu	36	21	36506187	36506187	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005128	exon7	c.C826T	p.R276C	.	.	.
ABCG1	9619	hgsc.bcm.edu	36	21	42583301	42583301	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_207629	exon11	c.G1288A	p.G430R	.	.	.
TUBA8	51807	hgsc.bcm.edu	36	22	16984400	16984400	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018943	exon2	c.T158C	p.F53S	.	.	.
ZNF280B	140883	hgsc.bcm.edu	36	22	21172527	21172527	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_080764	exon4	c.C1197T	p.G399G	.	.	.
MTMR3	8897	hgsc.bcm.edu	36	22	28746812	28746812	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_153050	exon17	c.G3164A	p.R1055H	.	.	.
SEC14L4	284904	hgsc.bcm.edu	36	22	29221618	29221618	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001161368	exon4	c.C186A	p.F62L	.	.	.
PES1	23481	hgsc.bcm.edu	36	22	29315243	29315243	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014303	exon2	c.G39A	p.S13S	.	.	.
LIMK2	3985	hgsc.bcm.edu	36	22	30002976	30002976	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001031801	exon15	c.T1911C	p.D637D	.	.	.
MCM5	4174	hgsc.bcm.edu	36	22	34134414	34134414	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006739	exon6	c.C610T	p.R204C	.	.	.
MYH9	4627	hgsc.bcm.edu	36	22	35046842	35046842	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002473	exon8	c.G815A	p.R272Q	.	.	.
C22orf23	84645	hgsc.bcm.edu	36	22	36670428	36670428	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_032561	exon6	c.T524C	p.M175T	.	.	.
PICK1	9463	hgsc.bcm.edu	36	22	36798953	36798953	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001039584	exon10	c.A691G	p.M231V	.	.	.
DMC1	11144	hgsc.bcm.edu	36	22	37292684	37292684	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_007068	exon4	c.G100A	p.V34M	.	.	.
ADSL	158	hgsc.bcm.edu	36	22	39090989	39090989	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000026	exon12	c.G1351A	p.G451S	.	.	.
ZC3H7B	23264	hgsc.bcm.edu	36	22	40081497	40081497	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_017590	exon18	c.C2113T	p.Q705X	.	.	.
ATXN10	25814	hgsc.bcm.edu	36	22	44617617	44617617	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001167621	exon10	c.G1128T	p.E376D	.	.	.
DPP10	57628	hgsc.bcm.edu	36	2	116236644	116236645	+	Frame_Shift_Ins	INS	-	-	CT	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	-	-	-	CT	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001178036	exon13	c.951_952insCT	p.W317fs	.	.	.
SEPT2	4735	hgsc.bcm.edu	36	2	241923229	241923230	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006155	exon4	c.146_147insA	p.G49fs	.	.	.
IL18R1	8809	hgsc.bcm.edu	36	2	102350724	102350724	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003855	exon2	c.T66C	p.C22C	.	.	.
SLC5A7	60482	hgsc.bcm.edu	36	2	107975057	107975057	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_021815	exon3	c.G242A	p.G81D	.	.	.
ATP6V1C2	245973	hgsc.bcm.edu	36	2	10811582	10811582	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001039362	exon4	c.C222T	p.S74S	.	.	.
GREB1	9687	hgsc.bcm.edu	36	2	11614223	11614223	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_148903	exon2	c.C32T	p.T11M	.	.	.
WDR33	55339	hgsc.bcm.edu	36	2	128242996	128242996	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018383	exon3	c.A254G	p.D85G	.	.	.
SAP130	79595	hgsc.bcm.edu	36	2	128474382	128474382	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001145928	exon8	c.C1064T	p.T355M	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	140809713	140809713	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018557	exon78	c.C12057T	p.T4019T	.	.	.
ARL6IP6	151188	hgsc.bcm.edu	36	2	153299786	153299786	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_152522	exon3	c.G487A	p.A163T	.	.	.
RPRM	56475	hgsc.bcm.edu	36	2	154043146	154043146	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_019845	exon1	c.G180A	p.A60A	.	.	.
UPP2	151531	hgsc.bcm.edu	36	2	158682677	158682677	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001135098	exon6	c.C606T	p.I202I	.	.	.
ITGB6	3694	hgsc.bcm.edu	36	2	160761050	160761050	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000888	exon3	c.T269A	p.L90H	.	.	.
PPIG	9360	hgsc.bcm.edu	36	2	170201740	170201740	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004792	exon14	c.C1726T	p.R576X	.	.	.
OLA1	29789	hgsc.bcm.edu	36	2	174802407	174802407	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_013341	exon3	c.T120G	p.N40K	.	.	.
PDE1A	5136	hgsc.bcm.edu	36	2	182741226	182741226	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001003683	exon15	c.A1601G	p.H534R	.	.	.
MYO1B	4430	hgsc.bcm.edu	36	2	191954471	191954471	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_012223	exon14	c.C1224T	p.N408N	 MYO1B,central_nervous_system,brain,Substitution - coding silent,0 	.	.
WDR35	57539	hgsc.bcm.edu	36	2	20009167	20009167	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001006657	exon17	c.C1739T	p.T580M	.	.	.
BMPR2	659	hgsc.bcm.edu	36	2	203091805	203091805	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001204	exon6	c.C637T	p.R213X	.	.	.
CTLA4	1493	hgsc.bcm.edu	36	2	204443702	204443702	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005214	exon2	c.G258A	p.A86A	.	.	.
PIKFYVE	200576	hgsc.bcm.edu	36	2	208877191	208877191	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001178000	exon11	c.G1372A	p.V458M	.	.	.
PIKFYVE	200576	hgsc.bcm.edu	36	2	208890867	208890867	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015040	exon16	c.T2039C	p.V680A	.	.	.
PIKFYVE	200576	hgsc.bcm.edu	36	2	208898510	208898510	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015040	exon20	c.C2730A	p.S910S	.	.	.
MAP2	4133	hgsc.bcm.edu	36	2	210267136	210267136	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002374	exon7	c.T1997G	p.V666G	.	.	.
APOB	338	hgsc.bcm.edu	36	2	21089657	21089657	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000384	exon25	c.T4096C	p.L1366L	.	.	.
APOB	338	hgsc.bcm.edu	36	2	21089695	21089695	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000384	exon25	c.T4058C	p.L1353P	.	.	.
APOB	338	hgsc.bcm.edu	36	2	21104390	21104390	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000384	exon14	c.A1882C	p.M628L	.	.	.
ERBB4	2066	hgsc.bcm.edu	36	2	213111440	213111440	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005235	exon1	c.C60T	p.V20V	.	.	.
ABCA12	26154	hgsc.bcm.edu	36	2	215584508	215584508	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_173076	exon17	c.C2232A	p.P744P	.	.	.
XRCC5	7520	hgsc.bcm.edu	36	2	216763285	216763285	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_021141	exon17	c.C1927T	p.R643W	.	.	.
PAX3	5077	hgsc.bcm.edu	36	2	222793278	222793278	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_181461	exon7	c.C998T	p.P333L	.	.	.
MRPL44	65080	hgsc.bcm.edu	36	2	224532629	224532629	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_022915	exon2	c.G314A	p.R105H	.	.	.
DGKD	8527	hgsc.bcm.edu	36	2	234033145	234033145	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_152879	exon23	c.C2698T	p.R900C	.	.	.
AGAP1	116987	hgsc.bcm.edu	36	2	236314415	236314415	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001037131	exon4	c.G380C	p.G127A	.	.	.
OTOF	9381	hgsc.bcm.edu	36	2	26536425	26536425	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_194248	exon46	c.A5966G	p.Y1989C	.	.	.
C2orf18	54978	hgsc.bcm.edu	36	2	26851452	26851452	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_017877	exon3	c.G187A	p.A63T	.	.	.
RBKS	64080	hgsc.bcm.edu	36	2	27903998	27903998	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_022128	exon7	c.A735G	p.S245S	.	.	.
LTBP1	4052	hgsc.bcm.edu	36	2	33439334	33439334	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000627	exon23	c.C3189T	p.C1063C	.	.	.
CEBPZ	10153	hgsc.bcm.edu	36	2	37294547	37294547	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005760	exon10	c.G2509T	p.E837X	.	.	.
PLEKHH2	130271	hgsc.bcm.edu	36	2	43824496	43824496	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_172069	exon23	c.C3419T	p.S1140F	.	.	.
PLEKHH2	130271	hgsc.bcm.edu	36	2	43824523	43824523	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_172069	exon23	c.C3446T	p.T1149I	.	.	.
PLEKHH2	130271	hgsc.bcm.edu	36	2	43826511	43826511	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_172069	exon24	c.T3558C	p.I1186I	.	.	.
SRBD1	55133	hgsc.bcm.edu	36	2	45628205	45628205	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018079	exon13	c.C1726T	p.R576X	.	.	.
MSH6	2956	hgsc.bcm.edu	36	2	47884174	47884174	+	Missense_Mutation	SNP	G	G	A	rs63750253	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000179	exon5	c.G3284A	p.R1095H	.	.	.
ETAA1	54465	hgsc.bcm.edu	36	2	67484374	67484374	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_019002	exon5	c.G1056A	p.M352I	.	.	.
WDR92	116143	hgsc.bcm.edu	36	2	68215361	68215361	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_138458	exon7	c.C843T	p.A281A	.	.	.
ASPRV1	151516	hgsc.bcm.edu	36	2	70042143	70042143	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_152792	exon1	c.C182T	p.A61V	.	.	.
INO80B	83444	hgsc.bcm.edu	36	2	74536084	74536084	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_031288	exon2	c.A102T	p.G34G	.	.	.
LRRTM1	347730	hgsc.bcm.edu	36	2	80383110	80383110	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_178839	exon2	c.C1346A	p.S449Y	.	.	.
TCF7L1	83439	hgsc.bcm.edu	36	2	85383136	85383136	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_031283	exon5	c.G544A	p.V182I	.	.	.
KDM3A	55818	hgsc.bcm.edu	36	2	86547089	86547089	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001146688	exon10	c.G1091A	p.C364Y	.	.	.
SMYD1	150572	hgsc.bcm.edu	36	2	88186987	88186987	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_198274	exon8	c.A1010T	p.E337V	.	.	.
C3orf26	84319	hgsc.bcm.edu	36	3	101367917	101367917	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001167924	exon5	c.A350G	p.Y117C	.	.	.
CEP97	79598	hgsc.bcm.edu	36	3	102934085	102934085	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_024548	exon6	c.A625G	p.M209V	.	.	.
CD96	10225	hgsc.bcm.edu	36	3	112746747	112746747	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005816	exon2	c.G226A	p.G76S	.	.	.
PHLDB2	90102	hgsc.bcm.edu	36	3	113171425	113171425	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001134439	exon16	c.C3514T	p.R1172X	.	.	.
SIDT1	54847	hgsc.bcm.edu	36	3	114825232	114825232	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_017699	exon23	c.G2269A	p.A757T	.	.	.
FSTL1	11167	hgsc.bcm.edu	36	3	121617510	121617510	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_007085	exon3	c.C118T	p.R40W	.	.	.
GTF2E1	2960	hgsc.bcm.edu	36	3	121982887	121982887	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005513	exon5	c.C1200A	p.G400G	.	.	.
TSEN2	80746	hgsc.bcm.edu	36	3	12535684	12535684	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_025265	exon8	c.G1087A	p.G363R	.	.	.
ABTB1	80325	hgsc.bcm.edu	36	3	128879365	128879365	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_172027	exon10	c.G1018A	p.D340N	.	.	.
GATA2	2624	hgsc.bcm.edu	36	3	129685428	129685428	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_032638	exon4	c.C982T	p.Q328X	.	.	.
ACAD9	28976	hgsc.bcm.edu	36	3	130096893	130096893	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014049	exon4	c.A397G	p.S133G	.	.	.
ACAD9	28976	hgsc.bcm.edu	36	3	130112274	130112274	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014049	exon17	c.G1693A	p.V565I	.	.	.
RHO	6010	hgsc.bcm.edu	36	3	130734221	130734221	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000539	exon4	c.T852C	p.G284G	.	.	.
TMCC1	23023	hgsc.bcm.edu	36	3	130856535	130856535	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001017395	exon5	c.C1613T	p.A538V	.	.	.
CNTN6	27255	hgsc.bcm.edu	36	3	1312479	1312479	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014461	exon6	c.C649T	p.R217C	.	.	.
DBR1	51163	hgsc.bcm.edu	36	3	139365365	139365365	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_016216	exon6	c.G740A	p.R247K	.	.	.
XRN1	54464	hgsc.bcm.edu	36	3	143625092	143625092	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_019001	exon6	c.G710A	p.R237Q	.	.	.
CAPN7	23473	hgsc.bcm.edu	36	3	15263911	15263911	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014296	exon19	c.T2147C	p.I716T	.	.	.
IGSF10	285313	hgsc.bcm.edu	36	3	152649019	152649019	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_178822	exon4	c.T1440C	p.N480N	.	.	.
HACL1	26061	hgsc.bcm.edu	36	3	15599464	15599464	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_012260	exon8	c.G591A	p.M197I	.	.	.
GFM1	85476	hgsc.bcm.edu	36	3	159852713	159852713	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_024996	exon6	c.C824T	p.S275L	.	.	.
RFTN1	23180	hgsc.bcm.edu	36	3	16425918	16425918	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015150	exon4	c.G409T	p.D137Y	.	.	.
WDR49	151790	hgsc.bcm.edu	36	3	168760602	168760602	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_178824	exon5	c.G595A	p.A199T	.	.	.
EVI1	2122	hgsc.bcm.edu	36	3	170290487	170290487	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001105077	exon15	c.A3027G	p.P1009P	.	.	.
EIF2B5	8893	hgsc.bcm.edu	36	3	185342741	185342741	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003907	exon9	c.C1325T	p.T442M	.	.	.
ABCF3	55324	hgsc.bcm.edu	36	3	185393913	185393913	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018358	exon20	c.C1950T	p.G650G	.	.	.
CLDN16	10686	hgsc.bcm.edu	36	3	191602856	191602856	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006580	exon2	c.G361A	p.V121I	.	.	.
PCYT1A	5130	hgsc.bcm.edu	36	3	197453324	197453324	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005017	exon8	c.C600A	p.I200I	.	.	.
PLCD1	5333	hgsc.bcm.edu	36	3	38028068	38028068	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006225	exon4	c.G529A	p.D177N	.	.	.
ZNF167	55888	hgsc.bcm.edu	36	3	44573654	44573654	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_025169	exon2	c.G111A	p.G37G	.	.	.
KIF15	56992	hgsc.bcm.edu	36	3	44854872	44854872	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_020242	exon27	c.A3273C	p.E1091D	.	.	.
TMEM42	131616	hgsc.bcm.edu	36	3	44880733	44880733	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_144638	exon2	c.C233T	p.A78V	.	.	.
LTF	4057	hgsc.bcm.edu	36	3	46467053	46467053	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001199149	exon7	c.C686T	p.A229V	.	.	.
SETD2	29072	hgsc.bcm.edu	36	3	47073431	47073431	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014159	exon15	c.C6847T	p.Q2283X	.	.	.
KLHL18	23276	hgsc.bcm.edu	36	3	47360313	47360313	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_025010	exon10	c.C1603T	p.Q535X	.	.	.
DHX30	22907	hgsc.bcm.edu	36	3	47858157	47858157	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_138615	exon8	c.C715T	p.L239L	.	.	.
ARIH2	10425	hgsc.bcm.edu	36	3	48992031	48992031	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006321	exon12	c.G1074A	p.A358A	.	.	.
TWF2	11344	hgsc.bcm.edu	36	3	52244127	52244127	+	Missense_Mutation	SNP	G	G	A	rs34008749	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_007284	exon2	c.C61T	p.R21W	.	.	.
STAB1	23166	hgsc.bcm.edu	36	3	52517342	52517342	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015136	exon21	c.G2162A	p.C721Y	.	.	.
FLNB	2317	hgsc.bcm.edu	36	3	58084276	58084276	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001164317	exon21	c.T3543C	p.S1181S	.	.	.
PTPRG	5793	hgsc.bcm.edu	36	3	62152285	62152285	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002841	exon9	c.T1136C	p.M379T	.	.	.
CNTN3	5067	hgsc.bcm.edu	36	3	74431772	74431772	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_020872	exon16	c.A2103C	p.E701D	.	.	.
C3orf45	132228	hgsc.bcm.edu	36	3	50299552	50299554	+	In_Frame_Del	DEL	AGG	AGG	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	AGG	AGG	AGG	-	AGG	AGG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_153215	exon4	c.410_412del	p.137_138del	.	.	.
SPCS1	28972	hgsc.bcm.edu	36	3	52716811	52716812	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	CA	CA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014041	exon4	c.453_454del	p.151_152del	.	.	.
NPY1R	4886	hgsc.bcm.edu	36	4	164465909	164465910	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000909	exon3	c.1151_1152insA	p.I384fs	.	.	.
MANBA	4126	hgsc.bcm.edu	36	4	103804918	103804918	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005908	exon11	c.T1457C	p.V486A	.	.	.
TET2	54790	hgsc.bcm.edu	36	4	106375377	106375377	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_017628	exon3	c.G829A	p.A277T	.	.	.
ANK2	287	hgsc.bcm.edu	36	4	114470982	114470982	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_020977	exon27	c.G3032T	p.R1011L	.	.	.
SYNPO2	171024	hgsc.bcm.edu	36	4	120172020	120172020	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_133477	exon4	c.C2642T	p.S881L	.	.	.
EXOSC9	5393	hgsc.bcm.edu	36	4	122943566	122943566	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001034194	exon4	c.C328A	p.L110I	.	.	.
FAT4	79633	hgsc.bcm.edu	36	4	126592776	126592776	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_024582	exon9	c.G11155A	p.V3719I	.	.	.
MAEA	10296	hgsc.bcm.edu	36	4	1320694	1320694	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001017405	exon7	c.C811T	p.R271W	.	.	.
BOD1L	259282	hgsc.bcm.edu	36	4	13211733	13211733	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_148894	exon10	c.A5889G	p.S1963S	.	.	.
IL15	3600	hgsc.bcm.edu	36	4	142870521	142870521	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_172174	exon7	c.T312G	p.D104E	.	.	.
NR3C2	4306	hgsc.bcm.edu	36	4	149335450	149335450	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001166104	exon4	c.T1911C	p.Y637Y	.	.	.
FGA	2243	hgsc.bcm.edu	36	4	155726295	155726295	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_021871	exon5	c.A1736G	p.Y579C	.	.	.
DDX60	55601	hgsc.bcm.edu	36	4	169451659	169451659	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_017631	exon7	c.G736A	p.V246I	.	.	.
C4orf41	60684	hgsc.bcm.edu	36	4	184843491	184843491	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_199053	exon17	c.G1703A	p.R568Q	.	.	.
SORBS2	8470	hgsc.bcm.edu	36	4	186781289	186781289	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_021069	exon13	c.G2276A	p.R759H	.	.	.
KLKB1	3818	hgsc.bcm.edu	36	4	187415431	187415431	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000892	exon14	c.G1643A	p.C548Y	.	.	.
GRK4	2868	hgsc.bcm.edu	36	4	2991263	2991263	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_182982	exon9	c.G839T	p.G280V	.	.	.
KLB	152831	hgsc.bcm.edu	36	4	39126408	39126408	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_175737	exon5	c.G2842A	p.D948N	.	.	.
ATP10D	57205	hgsc.bcm.edu	36	4	47232304	47232304	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_020453	exon6	c.C798T	p.R266R	.	.	.
KDR	3791	hgsc.bcm.edu	36	4	55662903	55662903	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002253	exon15	c.G2184A	p.R728R	.	.	.
EVC2	132884	hgsc.bcm.edu	36	4	5637349	5637349	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001166136	exon17	c.G2719A	p.A907T	.	.	.
PPAT	5471	hgsc.bcm.edu	36	4	56962257	56962257	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002703	exon7	c.C882A	p.F294L	.	.	.
MOBKL1A	92597	hgsc.bcm.edu	36	4	72059789	72059789	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_173468	exon4	c.G331A	p.A111T	.	.	.
ANKRD17	26057	hgsc.bcm.edu	36	4	74182663	74182663	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_198889	exon25	c.C4259A	p.A1420D	.	.	.
GRID2	2895	hgsc.bcm.edu	36	4	94251052	94251052	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001510	exon4	c.G660A	p.L220L	.	.	.
GRID2	2895	hgsc.bcm.edu	36	4	94356924	94356924	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001510	exon6	c.G802C	p.V268L	.	.	.
PDHA2	5161	hgsc.bcm.edu	36	4	96980997	96980997	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005390	exon1	c.T673C	p.Y225H	.	.	.
PLK4	10733	hgsc.bcm.edu	36	4	129028075	129028076	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001190801	exon6	c.1310_1311del	p.437_437del	.	.	.
CNOT6	57472	hgsc.bcm.edu	36	5	179928776	179928777	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015455	exon10	c.1088_1089insT	p.H363fs	.	.	.
PDZD2	23037	hgsc.bcm.edu	36	5	32124832	32124833	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_178140	exon19	c.5521_5522insA	p.Q1841fs	.	.	.
MARCH6	10299	hgsc.bcm.edu	36	5	10453942	10453942	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005885	exon11	c.A960G	p.G320G	.	.	.
MAN2A1	4124	hgsc.bcm.edu	36	5	109133965	109133965	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002372	exon7	c.T1020G	p.S340S	.	.	.
FTMT	94033	hgsc.bcm.edu	36	5	121215813	121215813	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_177478	exon1	c.C256A	p.L86I	.	.	.
DNAH5	1767	hgsc.bcm.edu	36	5	13915840	13915840	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001369	exon29	c.C4613T	p.A1538V	.	.	.
DNAH5	1767	hgsc.bcm.edu	36	5	13936123	13936123	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001369	exon20	c.G3064A	p.V1022I	.	.	.
PCDHB5	26167	hgsc.bcm.edu	36	5	140496575	140496575	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015669	exon1	c.G1375A	p.V459I	.	.	.
PCDHB15	56121	hgsc.bcm.edu	36	5	140605872	140605872	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018935	exon1	c.C542T	p.S181F	.	.	.
ARAP3	64411	hgsc.bcm.edu	36	5	141019581	141019581	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_022481	exon22	c.C3216T	p.H1072H	.	.	.
ARHGAP26	23092	hgsc.bcm.edu	36	5	142254013	142254013	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015071	exon6	c.G513A	p.R171R	.	.	.
TRIO	7204	hgsc.bcm.edu	36	5	14343949	14343949	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_007118	exon5	c.A665G	p.D222G	.	.	.
FBXW11	23291	hgsc.bcm.edu	36	5	171232547	171232547	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_033645	exon8	c.G1109A	p.R370Q	.	.	.
HRH2	3274	hgsc.bcm.edu	36	5	175043555	175043555	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_022304	exon1	c.C713T	p.A238V	.	.	.
TRIM7	81786	hgsc.bcm.edu	36	5	180557811	180557811	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_203295	exon6	c.A378C	p.G126G	.	.	.
CDH12	1010	hgsc.bcm.edu	36	5	21852871	21852871	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004061	exon9	c.A942G	p.G314G	.	.	.
CDH10	1008	hgsc.bcm.edu	36	5	24534311	24534311	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006727	exon9	c.G1468T	p.A490S	.	.	.
ADAMTS12	81792	hgsc.bcm.edu	36	5	33585198	33585198	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_030955	exon21	c.C4173T	p.C1391C	.	.	.
RAI14	26064	hgsc.bcm.edu	36	5	34847767	34847767	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001145522	exon9	c.A696T	p.G232G	.	.	.
RAI14	26064	hgsc.bcm.edu	36	5	34866591	34866591	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001145522	exon17	c.C2820T	p.I940I	.	.	.
UGT3A2	167127	hgsc.bcm.edu	36	5	36075529	36075529	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001168316	exon4	c.T780G	p.G260G	.	.	.
RICTOR	253260	hgsc.bcm.edu	36	5	38981394	38981394	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_152756	exon34	c.G4589A	p.G1530D	.	.	.
FBXO4	26272	hgsc.bcm.edu	36	5	41975310	41975310	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_012176	exon6	c.G909A	p.W303X	.	.	.
HCN1	348980	hgsc.bcm.edu	36	5	45389043	45389043	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_021072	exon5	c.A1293C	p.I431I	.	.	.
MCCC2	64087	hgsc.bcm.edu	36	5	70935953	70935953	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_022132	exon6	c.G526A	p.A176T	.	.	.
ADCY2	108	hgsc.bcm.edu	36	5	7855384	7855384	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_020546	exon21	c.G2682A	p.P894P	.	.	.
BRD9	65980	hgsc.bcm.edu	36	5	917593	917593	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_023924	exon16	c.C1784T	p.A595V	.	.	.
SEMA5A	9037	hgsc.bcm.edu	36	5	9243576	9243576	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003966	exon11	c.C1076T	p.T359I	.	.	.
MCHR2	84539	hgsc.bcm.edu	36	6	100502520	100502520	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001040179	exon3	c.G231T	p.V77V	.	.	.
HACE1	57531	hgsc.bcm.edu	36	6	105325914	105325914	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_020771	exon19	c.A2058G	p.E686E	.	.	.
SESN1	27244	hgsc.bcm.edu	36	6	109416555	109416555	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014454	exon9	c.A1453T	p.N485Y	.	.	.
AKD1	221264	hgsc.bcm.edu	36	6	110087176	110087176	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001145128	exon7	c.A578G	p.K193R	.	.	.
ELOVL2	54898	hgsc.bcm.edu	36	6	11097990	11097990	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_017770	exon7	c.G697A	p.G233S	.	.	.
HSF2	3298	hgsc.bcm.edu	36	6	122785010	122785010	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004506	exon8	c.C698T	p.T233I	.	.	.
RNF217	154214	hgsc.bcm.edu	36	6	125420901	125420901	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_152553	exon5	c.A355C	p.S119R	.	.	.
LAMA2	3908	hgsc.bcm.edu	36	6	129517485	129517485	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001079823	exon8	c.C1170T	p.C390C	.	.	.
EPB41L2	2037	hgsc.bcm.edu	36	6	131253165	131253165	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001135555	exon11	c.G1622A	p.R541H	.	.	.
IL20RA	53832	hgsc.bcm.edu	36	6	137367528	137367528	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014432	exon6	c.G787A	p.V263M	.	.	.
PEX3	8504	hgsc.bcm.edu	36	6	143834255	143834255	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003630	exon6	c.A499C	p.S167R	.	.	.
GRM1	2911	hgsc.bcm.edu	36	6	146667533	146667533	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001114329	exon4	c.G1044A	p.R348R	.	.	.
GRM1	2911	hgsc.bcm.edu	36	6	146762391	146762391	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001114329	exon8	c.G2523A	p.K841K	.	.	.
SASH1	23328	hgsc.bcm.edu	36	6	148903344	148903344	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015278	exon17	c.G2168A	p.R723Q	.	.	.
MTHFD1L	25902	hgsc.bcm.edu	36	6	151268518	151268518	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015440	exon8	c.C820T	p.P274S	.	.	.
ESR1	2099	hgsc.bcm.edu	36	6	152307172	152307172	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001122740	exon5	c.C932T	p.T311M	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152594226	152594226	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015293	exon29	c.C4604G	p.T1535S	.	.	.
IGF2R	3482	hgsc.bcm.edu	36	6	160416990	160416990	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000876	exon36	c.C5288T	p.A1763V	.	.	.
TTLL2	83887	hgsc.bcm.edu	36	6	167673649	167673649	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_031949	exon3	c.G271A	p.V91I	.	.	.
KIF25	3834	hgsc.bcm.edu	36	6	168186106	168186106	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_030615	exon8	c.C846T	p.T282T	.	.	.
BTN2A2	10385	hgsc.bcm.edu	36	6	26496442	26496442	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006995	exon4	c.C665T	p.S222F	.	.	.
DHX16	8449	hgsc.bcm.edu	36	6	30731029	30731029	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003587	exon18	c.C2725T	p.R909C	.	.	.
NOTCH4	4855	hgsc.bcm.edu	36	6	32289981	32289981	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004557	exon13	c.G2051T	p.G684V	.	.	.
IP6K3	117283	hgsc.bcm.edu	36	6	33798498	33798498	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_054111	exon6	c.C1210T	p.Q404X	.	.	.
DEF6	50619	hgsc.bcm.edu	36	6	35396992	35396992	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_022047	exon11	c.C1723T	p.L575F	.	.	.
BRPF3	27154	hgsc.bcm.edu	36	6	36276908	36276908	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015695	exon2	c.C831T	p.G277G	.	.	.
ZNF318	24149	hgsc.bcm.edu	36	6	43430644	43430644	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014345	exon4	c.G2406A	p.W802X	.	.	.
CRISP1	167	hgsc.bcm.edu	36	6	49911027	49911027	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001131	exon8	c.C711A	p.F237L	.	.	.
HCRTR2	3062	hgsc.bcm.edu	36	6	55255142	55255142	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001526	exon7	c.G1266A	p.E422E	.	.	.
F13A1	2162	hgsc.bcm.edu	36	6	6119833	6119833	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000129	exon12	c.G1726A	p.V576M	.	.	.
PHF3	23469	hgsc.bcm.edu	36	6	64481086	64481086	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_015153	exon15	c.G5643A	p.P1881P	.	.	.
COL9A1	1297	hgsc.bcm.edu	36	6	71050204	71050204	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001851	exon6	c.G737A	p.R246Q	.	.	.
PHIP	55023	hgsc.bcm.edu	36	6	79763938	79763938	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_017934	exon19	c.G2113A	p.A705T	.	.	.
SH3BGRL2	83699	hgsc.bcm.edu	36	6	80440165	80440165	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_031469	exon2	c.C161A	p.P54H	.	.	.
C6orf167	253714	hgsc.bcm.edu	36	6	97716721	97716721	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_198468	exon22	c.G3263A	p.R1088H	.	.	.
C6orf167	253714	hgsc.bcm.edu	36	6	97727707	97727707	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_198468	exon19	c.G2792A	p.G931E	.	.	.
TRIM31	11074	hgsc.bcm.edu	36	6	30187455	30187457	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	CTT	CTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_007028	exon3	c.460_462del	p.154_154del	.	.	.
GUSB	2990	hgsc.bcm.edu	36	7	65082195	65082196	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000181	exon3	c.535_536insC	p.T179fs	.	.	.
ABCB4	5244	hgsc.bcm.edu	36	7	86889387	86889388	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000443	exon18	c.2302_2303insT	p.T768fs	.	.	.
FBXO24	26261	hgsc.bcm.edu	36	7	100025781	100025781	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001163499	exon3	c.G151A	p.G51S	.	.	.
RELN	5649	hgsc.bcm.edu	36	7	103128645	103128645	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005045	exon9	c.G850A	p.V284M	.	.	.
MLL5	55904	hgsc.bcm.edu	36	7	104533543	104533543	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_182931	exon19	c.G2453A	p.R818Q	.	.	.
RINT1	60561	hgsc.bcm.edu	36	7	104982759	104982759	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_021930	exon11	c.A1520G	p.E507G	.	.	.
ATXN7L1	222255	hgsc.bcm.edu	36	7	105304119	105304119	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_020725	exon1	c.C122T	p.A41V	.	.	.
PIK3CG	5294	hgsc.bcm.edu	36	7	106296875	106296875	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002649	exon2	c.G1633A	p.A545T	.	.	.
PPP1R3A	5506	hgsc.bcm.edu	36	7	113345922	113345922	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002711	exon1	c.A366G	p.Q122Q	.	.	.
CALD1	800	hgsc.bcm.edu	36	7	134264186	134264186	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_033157	exon4	c.G213T	p.Q71H	.	.	.
BRAF	673	hgsc.bcm.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004333	exon15	c.T1799A	p.V600E	 BRAF,pituitary,NS,Substitution - Missense,0 	.	.
KEL	3792	hgsc.bcm.edu	36	7	142361072	142361072	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000420	exon9	c.G1018A	p.V340M	.	.	.
CUL1	8454	hgsc.bcm.edu	36	7	148125874	148125874	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003592	exon18	c.C1937T	p.S646L	.	.	.
MLL3	58508	hgsc.bcm.edu	36	7	151476323	151476323	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_170606	exon52	c.G13622A	p.R4541Q	.	.	.
XRCC2	7516	hgsc.bcm.edu	36	7	151976730	151976730	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005431	exon3	c.G773A	p.R258H	.	.	.
SHH	6469	hgsc.bcm.edu	36	7	155297407	155297407	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000193	exon1	c.C171T	p.G57G	.	.	.
UBE3C	9690	hgsc.bcm.edu	36	7	156655815	156655815	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014671	exon4	c.C252T	p.G84G	.	.	.
CRHR2	1395	hgsc.bcm.edu	36	7	30668864	30668864	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001883	exon6	c.G668A	p.R223H	.	.	.
GHRHR	2692	hgsc.bcm.edu	36	7	30985341	30985341	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000823	exon13	c.C1229T	p.T410M	.	.	.
TXNDC3	51314	hgsc.bcm.edu	36	7	37871654	37871654	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_016616	exon10	c.T531G	p.I177M	.	.	.
TXNDC3	51314	hgsc.bcm.edu	36	7	37873926	37873926	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_016616	exon11	c.C719T	p.T240I	.	.	.
C7orf25	79020	hgsc.bcm.edu	36	7	42916845	42916845	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_024054	exon2	c.A180G	p.K60K	.	.	.
POLD2	5425	hgsc.bcm.edu	36	7	44121977	44121977	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001127218	exon9	c.C1060T	p.R354X	.	.	.
OGDH	4967	hgsc.bcm.edu	36	7	44713495	44713495	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002541	exon21	c.A2779G	p.I927V	.	.	.
RBAK	57786	hgsc.bcm.edu	36	7	5069863	5069863	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_021163	exon5	c.G250A	p.V84I	.	.	.
WBSCR17	64409	hgsc.bcm.edu	36	7	70523931	70523931	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_022479	exon5	c.A866G	p.E289G	.	.	.
YWHAG	7532	hgsc.bcm.edu	36	7	75796845	75796845	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_012479	exon2	c.C729T	p.G243G	.	.	.
DTX2	113878	hgsc.bcm.edu	36	7	75972723	75972723	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001102595	exon10	c.G1738A	p.E580K	.	.	.
PTPN12	5782	hgsc.bcm.edu	36	7	77094439	77094439	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001131009	exon12	c.T1117A	p.S373T	.	.	.
MAGI2	9863	hgsc.bcm.edu	36	7	77594643	77594643	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_012301	exon19	c.A3230G	p.Q1077R	.	.	.
CACNA2D1	781	hgsc.bcm.edu	36	7	81426992	81426992	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000722	exon37	c.T3056G	p.L1019R	.	.	.
SEMA3D	223117	hgsc.bcm.edu	36	7	84480087	84480087	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_152754	exon15	c.G1715A	p.R572H	.	.	.
ZNF804B	219578	hgsc.bcm.edu	36	7	88803805	88803805	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_181646	exon4	c.G3573A	p.P1191P	.	.	.
BET1	10282	hgsc.bcm.edu	36	7	93461562	93461562	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005868	exon4	c.G273A	p.G91G	.	.	.
TRRAP	8295	hgsc.bcm.edu	36	7	98362825	98362825	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003496	exon23	c.C3075A	p.A1025A	.	.	.
KIAA0196	9897	hgsc.bcm.edu	36	8	126137062	126137063	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014846	exon17	c.2050_2051insT	p.T684fs	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	113386287	113386287	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_198123	exon52	c.T8105A	p.L2702X	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	113585273	113585273	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_198123	exon30	c.A5005G	p.S1669G	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	113763994	113763994	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_198123	exon16	c.C2530T	p.R844W	.	.	.
COL14A1	7373	hgsc.bcm.edu	36	8	121361429	121361429	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_021110	exon29	c.G3556A	p.A1186T	.	.	.
MTMR7	9108	hgsc.bcm.edu	36	8	17250919	17250919	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004686	exon5	c.G511A	p.A171T	.	.	.
CDCA2	157313	hgsc.bcm.edu	36	8	25373892	25373892	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_152562	exon3	c.G137A	p.C46Y	.	.	.
ELP3	55140	hgsc.bcm.edu	36	8	28026510	28026510	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018091	exon7	c.C518T	p.T173M	.	.	.
NRG1	3084	hgsc.bcm.edu	36	8	32741163	32741163	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_013957	exon12	c.G1615A	p.A539T	.	.	.
PROSC	11212	hgsc.bcm.edu	36	8	37754745	37754745	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_007198	exon8	c.G793A	p.V265M	.	.	.
RAB11FIP1	80223	hgsc.bcm.edu	36	8	37848973	37848973	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001002814	exon4	c.C2505A	p.P835P	.	.	.
MYST3	7994	hgsc.bcm.edu	36	8	41917626	41917626	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001099413	exon16	c.A2930G	p.D977G	.	.	.
MYST3	7994	hgsc.bcm.edu	36	8	42025522	42025522	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001099413	exon3	c.G131A	p.R44H	.	.	.
PLAT	5327	hgsc.bcm.edu	36	8	42157213	42157213	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_033011	exon9	c.T899C	p.L300P	.	.	.
IKBKB	3551	hgsc.bcm.edu	36	8	42248802	42248802	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001190722	exon2	c.G27A	p.T9T	.	.	.
ARFGEF1	10565	hgsc.bcm.edu	36	8	68342006	68342006	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006421	exon12	c.A1686G	p.V562V	.	.	.
IMPA1	3612	hgsc.bcm.edu	36	8	82735310	82735310	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_005536	exon8	c.T714C	p.V238V	.	.	.
RIPK2	8767	hgsc.bcm.edu	36	8	90851164	90851164	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003821	exon4	c.C511T	p.R171C	.	.	.
TMEM38B	55151	hgsc.bcm.edu	36	9	107523678	107523678	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018112	exon3	c.G309T	p.Q103H	.	.	.
CTNNAL1	8727	hgsc.bcm.edu	36	9	110794821	110794821	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003798	exon3	c.C431G	p.A144G	.	.	.
PRPF4	9128	hgsc.bcm.edu	36	9	115085238	115085238	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004697	exon5	c.G489A	p.Q163Q	.	.	.
C9orf43	257169	hgsc.bcm.edu	36	9	115221215	115221215	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_152786	exon4	c.G294A	p.P98P	.	.	.
ASTN2	23245	hgsc.bcm.edu	36	9	119016638	119016638	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014010	exon3	c.G835A	p.V279I	.	.	.
TLR4	7099	hgsc.bcm.edu	36	9	119514777	119514777	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_138554	exon3	c.A550G	p.S184G	.	.	.
OR1J1	347168	hgsc.bcm.edu	36	9	124279489	124279489	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001004451	exon1	c.G538T	p.D180Y	.	.	.
RALGPS1	9649	hgsc.bcm.edu	36	9	129014276	129014276	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014636	exon15	c.G1293A	p.V431V	.	.	.
ODF2	4957	hgsc.bcm.edu	36	9	130273426	130273426	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_153439	exon5	c.G514A	p.E172K	.	.	.
SPTAN1	6709	hgsc.bcm.edu	36	9	130407269	130407269	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001195532	exon29	c.C3795T	p.L1265L	.	.	.
SNAPC4	6621	hgsc.bcm.edu	36	9	138410026	138410026	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003086	exon3	c.C195T	p.G65G	.	.	.
IFNA10	3446	hgsc.bcm.edu	36	9	21196958	21196958	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002171	exon1	c.A139T	p.I47F	.	.	.
KLHL9	55958	hgsc.bcm.edu	36	9	21323693	21323693	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_018847	exon1	c.G1166A	p.R389H	.	.	.
VLDLR	7436	hgsc.bcm.edu	36	9	2633743	2633743	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001018056	exon6	c.C936A	p.C312X	.	.	.
DDX58	23586	hgsc.bcm.edu	36	9	32516077	32516077	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014314	exon1	c.G88A	p.A30T	.	.	.
B4GALT1	2683	hgsc.bcm.edu	36	9	33110603	33110603	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001497	exon3	c.C650T	p.A217V	.	.	.
DNAJB5	25822	hgsc.bcm.edu	36	9	34986633	34986633	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001135005	exon3	c.C799T	p.R267C	.	.	.
UNC13B	10497	hgsc.bcm.edu	36	9	35387686	35387686	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_006377	exon29	c.G3484A	p.A1162T	.	.	.
NPR2	4882	hgsc.bcm.edu	36	9	35782836	35782836	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003995	exon1	c.C431T	p.P144L	.	.	.
MELK	9833	hgsc.bcm.edu	36	9	36661004	36661004	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014791	exon16	c.A1515C	p.S505S	.	.	.
FRMPD1	22844	hgsc.bcm.edu	36	9	37730494	37730494	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014907	exon15	c.T1969G	p.C657G	.	.	.
TJP2	9414	hgsc.bcm.edu	36	9	71052859	71052859	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_201629	exon19	c.G2779A	p.G927S	.	.	.
TRPM3	80036	hgsc.bcm.edu	36	9	72566338	72566338	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001007471	exon8	c.T1271C	p.L424S	.	.	.
TRPM6	140803	hgsc.bcm.edu	36	9	76543322	76543322	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001177310	exon36	c.G5582A	p.C1861Y	.	.	.
SHC3	53358	hgsc.bcm.edu	36	9	90843017	90843017	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_016848	exon11	c.T1367C	p.F456S	.	.	.
PTCH1	5727	hgsc.bcm.edu	36	9	97260251	97260251	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001083605	exon18	c.C2580T	p.N860N	.	.	.
LRRC8A	56262	hgsc.bcm.edu	36	9	130711132	130711134	+	In_Frame_Del	DEL	ACA	ACA	-	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	ACA	ACA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_019594	exon3	c.1868_1870del	p.623_624del	.	.	.
CAPN6	827	hgsc.bcm.edu	36	X	110377332	110377332	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_014289	exon12	c.C1663T	p.Q555X	.	.	.
IGSF1	3547	hgsc.bcm.edu	36	X	130236444	130236444	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001170962	exon17	c.G3534A	p.L1178L	.	.	.
AFF2	2334	hgsc.bcm.edu	36	X	147847601	147847601	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_002025	exon12	c.A2603C	p.K868T	.	.	.
F8	2157	hgsc.bcm.edu	36	X	153741955	153741955	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000132	exon25	c.C6846A	p.S2282S	.	.	.
MAOA	4128	hgsc.bcm.edu	36	X	43476946	43476946	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000240	exon9	c.G1012A	p.D338N	.	.	.
SUV39H1	6839	hgsc.bcm.edu	36	X	48449853	48449853	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_003173	exon5	c.G996C	p.V332V	.	.	.
FAAH2	158584	hgsc.bcm.edu	36	X	57490191	57490191	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_174912	exon9	c.T1222A	p.S408T	.	.	.
GDPD2	54857	hgsc.bcm.edu	36	X	69563922	69563922	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_001171193	exon9	c.C583T	p.H195Y	.	.	.
ATP7A	538	hgsc.bcm.edu	36	X	77130607	77130607	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_000052	exon3	c.G334A	p.G112S	.	.	.
P2RY10	27334	hgsc.bcm.edu	36	X	78103147	78103147	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_198333	exon2	c.C474T	p.I158I	.	.	.
USP9Y	8287	hgsc.bcm.edu	36	Y	13432142	13432142	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	d6d8e49f-598c-4443-9a82-6bd5b6ade5f2	a67ee930-cd03-485a-a40a-0431a5cb01f3	NM_004654	exon29	c.A4234G	p.I1412V	.	.	.