Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target ABI1 10006 broad.mit.edu 36 10 27152149 27152149 + Missense_Mutation SNP T C C novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001178124 exon2 c.A209G p.N70S . . . POLR3A 11128 broad.mit.edu 36 10 79455943 79455943 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_007055 exon2 c.C95T p.A32V . . . BTAF1 9044 broad.mit.edu 36 10 93701176 93701176 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003972 exon5 c.G437A p.R146Q . . . KIF11 3832 broad.mit.edu 36 10 94362844 94362844 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004523 exon7 c.G766A p.V256I . . . TECTA 7007 broad.mit.edu 36 11 120503936 120503936 + Silent SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005422 exon8 c.C2040T p.G680G . . . ACTN3 89 broad.mit.edu 36 11 66082159 66082159 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001104 exon11 c.G1214A p.R405Q . . . RIMBP2 23504 broad.mit.edu 36 12 129493093 129493093 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015347 exon8 c.G706A p.E236K . . . KRAS 3845 broad.mit.edu 36 12 25289552 25289552 + Missense_Mutation SNP C A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004985 exon2 c.G34T p.G12C KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1 . . OR6C6 283365 broad.mit.edu 36 12 53974920 53974920 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001005493 exon1 c.G364A p.V122I . . . OR10P1 121130 broad.mit.edu 36 12 54317762 54317762 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_206899 exon1 c.G820A p.V274I . . . WNK1 65125 broad.mit.edu 36 12 806679 806679 + Silent SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001184985 exon3 c.G1143A p.K381K . . . PCDH17 27253 broad.mit.edu 36 13 57104751 57104751 + Missense_Mutation SNP T C C novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001040429 exon1 c.T70C p.S24P . . . SLITRK1 114798 broad.mit.edu 36 13 83352597 83352597 + Silent SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_052910 exon1 c.C1047T p.H349H . . . SPATA7 55812 broad.mit.edu 36 14 87969298 87969298 + Silent SNP A G G novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001040428 exon9 c.A1053G p.L351L . . . TRPM1 4308 broad.mit.edu 36 15 29106472 29106472 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002420 exon25 c.G3368A p.R1123H . . . VPS13C 54832 broad.mit.edu 36 15 59988526 59988526 + Missense_Mutation SNP T C C novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_017684 exon63 c.A8806G p.I2936V . . . DPP8 54878 broad.mit.edu 36 15 63533796 63533796 + Missense_Mutation SNP T G G novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_197960 exon18 c.A2177C p.E726A . . . SCAMP5 192683 broad.mit.edu 36 15 73095989 73095989 + Missense_Mutation SNP A G G novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001178111 exon5 c.A139G p.N47D . . . BNC1 646 broad.mit.edu 36 15 81723669 81723669 + Silent SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001717 exon4 c.G1338A p.T446T . . . IFT140 9742 broad.mit.edu 36 16 1554065 1554065 + Silent SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014714 exon17 c.G2001A p.Q667Q . . . MYH11 4629 broad.mit.edu 36 16 15783748 15783748 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001040114 exon7 c.C742T p.R248X . . . LHX1 3975 broad.mit.edu 36 17 32374507 32374508 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005568 exon5 c.1187_1188insC p.H396fs . . . MYH4 4622 broad.mit.edu 36 17 10294884 10294884 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_017533 exon29 c.C3919T p.R1307X . . . MNT 4335 broad.mit.edu 36 17 2245383 2245383 + Silent SNP T G G novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020310 exon2 c.A189C p.P63P . . . ACCN1 40 broad.mit.edu 36 17 28372373 28372373 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_183377 exon7 c.C1418T p.A473V . . . WNT3 7473 broad.mit.edu 36 17 42201031 42201031 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_030753 exon4 c.C892T p.R298W . . . TTLL6 284076 broad.mit.edu 36 17 44218546 44218546 + Silent SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001130918 exon12 c.C1740T p.A580A . . . CANT1 124583 broad.mit.edu 36 17 74501371 74501371 + Silent SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001159773 exon5 c.C1062T p.D354D . . . TP53 7157 broad.mit.edu 36 17 7519259 7519259 + Missense_Mutation SNP C G G novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001126114 exon5 c.G396C p.K132N TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 . . L3MBTL4 91133 broad.mit.edu 36 18 6234486 6234486 + Silent SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_173464 exon6 c.G321A p.A107A . . . IL12RB1 3594 broad.mit.edu 36 19 18058705 18058706 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . MYBPC2 4606 broad.mit.edu 36 19 55650679 55650679 + Silent SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004533 exon20 c.C2304T p.I768I . . . NLRP12 91662 broad.mit.edu 36 19 59006071 59006071 + Silent SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_144687 exon3 c.G654A p.A218A . . . ZNF329 79673 broad.mit.edu 36 19 63331305 63331305 + Missense_Mutation SNP A G G novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024620 exon4 c.T1378C p.C460R . . . GSTM5 2949 broad.mit.edu 36 1 110056488 110056488 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000851 exon1 c.C31T p.R11C . . . HFE2 148738 broad.mit.edu 36 1 144126720 144126720 + Missense_Mutation SNP C A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_213653 exon3 c.C182A p.A61E . . . SPTA1 6708 broad.mit.edu 36 1 156922915 156922915 + Missense_Mutation SNP T C C novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003126 exon1 c.A17G p.K6R . . . OLFML2B 25903 broad.mit.edu 36 1 160220467 160220467 + Silent SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015441 exon8 c.C1875T p.D625D . . . LMX1A 4009 broad.mit.edu 36 1 163485328 163485328 + Missense_Mutation SNP C A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_177398 exon4 c.G437T p.G146V . . . HMCN1 83872 broad.mit.edu 36 1 184417946 184417946 + Missense_Mutation SNP G T T rs74136061 unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031935 exon105 c.G16318T p.D5440Y . . . OR2T8 343172 broad.mit.edu 36 1 246151474 246151474 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001005522 exon1 c.G532A p.E178K . . . OR2T33 391195 broad.mit.edu 36 1 246503208 246503208 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001004695 exon1 c.G532A p.E178K . . . HHLA3 11147 broad.mit.edu 36 1 70604725 70604725 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001036645 exon2 c.C268T p.R90W . . . TGFBR3 7049 broad.mit.edu 36 1 91957504 91957504 + Missense_Mutation SNP T C C novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001195683 exon10 c.A1516G p.T506A . . . EPB41L1 2036 broad.mit.edu 36 20 34260877 34260877 + Silent SNP G C C novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_012156 exon15 c.G1722C p.R574R . . . SALL4 57167 broad.mit.edu 36 20 49841817 49841817 + Silent SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020436 exon2 c.C612T p.P204P . . . HAO1 54363 broad.mit.edu 36 20 7863152 7863152 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_017545 exon2 c.G268A p.G90S . . . PXDN 7837 broad.mit.edu 36 2 1636526 1636526 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_012293 exon16 c.G1985A p.R662Q . . . SCN9A 6335 broad.mit.edu 36 2 166846508 166846508 + Silent SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002977 exon13 c.G1998A p.E666E . . . PAX3 5077 broad.mit.edu 36 2 222870067 222870067 + Silent SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000438 exon2 c.C195T p.H65H . . . SH3YL1 26751 broad.mit.edu 36 2 224162 224162 + Silent SNP T C C novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015677 exon5 c.A402G p.G134G . . . C2orf70 339778 broad.mit.edu 36 2 26655773 26655773 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001105519 exon4 c.G569A p.R190Q . . . CLIP4 79745 broad.mit.edu 36 2 29210096 29210096 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024692 exon5 c.C439T p.R147C . . . CTNNA2 1496 broad.mit.edu 36 2 79954832 79954832 + Silent SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004389 exon6 c.G708A p.T236T . . . PARP15 165631 broad.mit.edu 36 3 123818637 123818637 + Silent SNP T C C novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152615 exon2 c.T234C p.D78D . . . DNAJC13 23317 broad.mit.edu 36 3 133654856 133654856 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015268 exon7 c.G562A p.E188K . . . CNTN6 27255 broad.mit.edu 36 3 1400058 1400058 + Missense_Mutation SNP G T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014461 exon19 c.G2483T p.W828L . . . P2RY14 9934 broad.mit.edu 36 3 152414344 152414344 + Missense_Mutation SNP G T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014879 exon3 c.C451A p.L151I . . . OTOL1 131149 broad.mit.edu 36 3 162704281 162704281 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080440 exon4 c.G1291A p.V431I . . . PIK3CA 5290 broad.mit.edu 36 3 180418785 180418785 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006218 exon10 c.G1633A p.E545K PIK3CA,urinary_tract,bladder,Substitution - Missense,0 . . RBMS3 27303 broad.mit.edu 36 3 29603660 29603660 + Missense_Mutation SNP C A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001003793 exon4 c.C359A p.A120E . . . SUSD5 26032 broad.mit.edu 36 3 33224329 33224329 + Nonsense_Mutation SNP G C C novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015551 exon3 c.C384G p.Y128X . . . PROK2 60675 broad.mit.edu 36 3 71904638 71904638 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001126128 exon4 c.C317T p.T106I . . . GABRR3 200959 broad.mit.edu 36 3 99188389 99188389 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001105580 exon9 c.C1232T p.S411L . . . FGG 2266 broad.mit.edu 36 4 155749211 155749211 + Silent SNP T C C novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021870 exon7 c.A708G p.Q236Q . . . REST 5978 broad.mit.edu 36 4 57492791 57492791 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001193508 exon4 c.G3010A p.E1004K . . . DNAH5 1767 broad.mit.edu 36 5 13938265 13938265 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001369 exon19 c.C2816T p.T939M . . . PCDHA7 56141 broad.mit.edu 36 5 140196076 140196076 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_018910 exon1 c.G1924A p.A642T . . . PCDHGA2 56113 broad.mit.edu 36 5 140699326 140699326 + Missense_Mutation SNP C A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_032009 exon1 c.C604A p.R202S . . . FOXI1 2299 broad.mit.edu 36 5 169467638 169467638 + Silent SNP G T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_012188 exon2 c.G582T p.G194G . . . FBXW11 23291 broad.mit.edu 36 5 171274002 171274002 + Missense_Mutation SNP T C C novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_033644 exon2 c.A58G p.M20V . . . NDUFS6 4726 broad.mit.edu 36 5 1868980 1868980 + Missense_Mutation SNP A G G novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004553 exon4 c.A325G p.T109A . . . EDIL3 10085 broad.mit.edu 36 5 83396409 83396409 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005711 exon8 c.G818A p.G273E . . . GCNT2 2651 broad.mit.edu 36 6 10637824 10637824 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_145649 exon3 c.G694A p.V232I . . . GPR6 2830 broad.mit.edu 36 6 110407856 110407856 + Missense_Mutation SNP T G G novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005284 exon1 c.T848G p.V283G . . . ECHDC1 55862 broad.mit.edu 36 6 127693821 127693821 + Missense_Mutation SNP T C C novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018479 exon2 c.A46G p.K16E . . . UHRF1BP1 54887 broad.mit.edu 36 6 34934565 34934565 + Missense_Mutation SNP G T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_017754 exon14 c.G2454T p.M818I . . . BTBD9 114781 broad.mit.edu 36 6 38250769 38250769 + Silent SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001172418 exon11 c.C1719T p.N573N . . . ZNF425 155054 broad.mit.edu 36 7 148433565 148433565 + Missense_Mutation SNP C G G novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001001661 exon4 c.G331C p.E111Q . . . UNC5D 137970 broad.mit.edu 36 8 35736421 35736421 + Silent SNP G T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_080872 exon14 c.G2205T p.L735L . . . EYA1 2138 broad.mit.edu 36 8 72373919 72373919 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_172060 exon7 c.C644T p.T215M . . . GDAP1 54332 broad.mit.edu 36 8 75436761 75436761 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018972 exon4 c.G572A p.R191Q . . . COL15A1 1306 broad.mit.edu 36 9 100857457 100857457 + Silent SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001855 exon34 c.C3174T p.P1058P . . . TPRN 286262 broad.mit.edu 36 9 139206846 139206848 + In_Frame_Del DEL TCC - - novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 TCC TCC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001128228 exon2 c.1842_1844del p.614_615del . . . CXorf57 55086 broad.mit.edu 36 X 105778249 105778249 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018015 exon11 c.C1955T p.P652L . . . CHRDL1 91851 broad.mit.edu 36 X 109806202 109806202 + Missense_Mutation SNP C A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001143981 exon12 c.G1290T p.Q430H . . . RPL39 6170 broad.mit.edu 36 X 118807975 118807975 + Silent SNP G T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001000 exon2 c.C31A p.R11R . . . TLR7 51284 broad.mit.edu 36 X 12815765 12815765 + Silent SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016562 exon3 c.G2217A p.T739T . . . MAP7D3 79649 broad.mit.edu 36 X 135155919 135155919 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001173517 exon3 c.G224A p.R75H . . . VGLL1 51442 broad.mit.edu 36 X 135458754 135458754 + Silent SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016267 exon3 c.C555T p.A185A . . . CXorf1 9142 broad.mit.edu 36 X 144717039 144717039 + Missense_Mutation SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004709 exon1 c.C152T p.S51L . . . CNGA2 1260 broad.mit.edu 36 X 150662256 150662256 + Nonsense_Mutation SNP A T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005140 exon7 c.A625T p.K209X . . . AVPR2 554 broad.mit.edu 36 X 152824759 152824759 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000054 exon2 c.G605A p.R202H . . . DLG3 1741 broad.mit.edu 36 X 69587351 69587351 + Silent SNP C T T novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021120 exon6 c.C978T p.Y326Y . . . MAGEE1 57692 broad.mit.edu 36 X 75565865 75565865 + Missense_Mutation SNP G A A novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020932 exon1 c.G1138A p.V380M . . . PGK1 5230 broad.mit.edu 36 X 77267944 77267944 + Silent SNP T G G novel unknown TCGA-AA-A03J-01A-21W-A096-10 TCGA-AA-A03J-11A-11W-A096-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000291 exon11 c.T1215G p.G405G . . .