Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
HTRA1	5654	broad.mit.edu	36	10	124239124	124239124	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002775	exon3	c.G769T	p.D257Y	.	.	.
C10orf90	118611	broad.mit.edu	36	10	128139973	128139973	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004298	exon5	c.C1706G	p.S569C	.	.	.
ARHGAP21	57584	broad.mit.edu	36	10	24949067	24949067	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020824	exon9	c.C1763G	p.P588R	.	.	.
EXOC6	54536	broad.mit.edu	36	10	94659291	94659291	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001013848	exon6	c.T571A	p.S191T	.	.	.
TLL2	7093	broad.mit.edu	36	10	98145654	98145654	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012465	exon12	c.T1498C	p.F500L	.	.	.
C10orf93	255352	broad.mit.edu	36	10	134602236	134602236	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173572	exon5	c.383delT	p.L128fs	.	.	.
HTR3A	3359	broad.mit.edu	36	11	113359085	113359085	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000869	exon5	c.C426T	p.Y142Y	.	.	.
BDNF	627	broad.mit.edu	36	11	27636205	27636205	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001143805	exon2	c.C483T	p.G161G	.	.	.
SMTNL1	219537	broad.mit.edu	36	11	57074156	57074157	+	Missense_Mutation	DNP	AA	TG	TG	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	AA	AA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105565	exon7	c.1480_1481TG	.	.	.	.
FAT3	120114	broad.mit.edu	36	11	92165788	92165788	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008781	exon8	c.G4819A	p.A1607T	.	.	.
SLC48A1	55652	broad.mit.edu	36	12	46460357	46460358	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
APPL2	55198	broad.mit.edu	36	12	104092239	104092239	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018171	exon21	c.G1978A	p.A660T	.	.	.
TRPV4	59341	broad.mit.edu	36	12	108716543	108716543	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021625	exon8	c.G1465A	p.A489T	.	.	.
PLCZ1	89869	broad.mit.edu	36	12	18767704	18767704	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033123	exon4	c.G175T	p.E59X	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35T	p.G12V	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
KDM5A	5927	broad.mit.edu	36	12	287101	287101	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001042603	exon23	c.C3710T	p.P1237L	.	.	.
ACVRL1	94	broad.mit.edu	36	12	50596185	50596185	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001077401	exon7	c.G1147A	p.E383K	.	.	.
ACVR1B	91	broad.mit.edu	36	12	50665266	50665266	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020327	exon6	c.G847A	p.D283N	.	.	.
PPFIA2	8499	broad.mit.edu	36	12	80199191	80199191	+	Nonsense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003625	exon27	c.T3188G	p.L1063X	.	.	.
FAM155A	728215	broad.mit.edu	36	13	107316161	107316161	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080396	exon1	c.G785T	p.R262M	.	.	.
LIG4	3981	broad.mit.edu	36	13	107661305	107661305	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002312	exon2	c.G313C	p.D105H	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66699776	66699776	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020403	exon2	c.C798T	p.P266P	.	.	.
MIA2	117153	broad.mit.edu	36	14	38786424	38786424	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_054024	exon4	c.G895C	p.E299Q	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63745409	63745409	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015180	exon101	c.C18382G	p.R6128G	.	.	.
SPTB	6710	broad.mit.edu	36	14	64334275	64334275	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001024858	exon9	c.C1107T	p.I369I	.	.	.
CLMN	79789	broad.mit.edu	36	14	94740176	94740176	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024734	exon9	c.G1263A	p.P421P	.	.	.
MAPKBP1	23005	broad.mit.edu	36	15	39900543	39900543	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014994	exon23	c.T2703G	p.T901T	.	.	.
PYGO1	26108	broad.mit.edu	36	15	53625728	53625728	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015617	exon3	c.G1045A	p.E349K	.	.	.
UACA	55075	broad.mit.edu	36	15	68746865	68746868	+	Frame_Shift_Del	DEL	TGTT	-	-	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	TGTT	TGTT	TGTT	-	TGTT	TGTT	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018003	exon16	c.3209_3212del	p.1070_1071del	.	.	.
MYH11	4629	broad.mit.edu	36	16	15722213	15722213	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040114	exon34	c.G4796A	p.R1599K	.	.	.
STX1B	112755	broad.mit.edu	36	16	30915569	30915570	+	Missense_Mutation	DNP	GT	CA	CA	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052874	exon7	c.472_473TG	.	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3730513	3730513	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004380	exon24	c.C4021T	p.R1341X	.	.	.
CNGB1	1258	broad.mit.edu	36	16	56492804	56492804	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001297	exon29	c.A2929G	p.R977G	.	.	.
HS3ST3B1	9953	broad.mit.edu	36	17	14189138	14189138	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006041	exon2	c.G623A	p.R208Q	.	.	.
NT5M	56953	broad.mit.edu	36	17	17167241	17167241	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020201	exon3	c.G386T	p.C129F	.	.	.
OVCA2	124641	broad.mit.edu	36	17	1892887	1892887	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080822	exon2	c.G423T	p.L141F	.	.	.
SLFN11	91607	broad.mit.edu	36	17	30714585	30714585	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001104589	exon3	c.C355T	p.R119C	.	.	.
DHX40	79665	broad.mit.edu	36	17	54998786	54998786	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024612	exon2	c.G129A	p.T43T	.	.	.
CD300C	10871	broad.mit.edu	36	17	70052360	70052360	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006678	exon2	c.A383T	p.E128V	.	.	.
FAM27L	284123	broad.mit.edu	36	17	21750221	21750221	+	Splice_Site	SNP	A	C	C	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CDH2	1000	broad.mit.edu	36	18	23786167	23786167	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001792	exon16	c.G2669T	p.W890L	.	.	.
SMAD2	4087	broad.mit.edu	36	18	43628879	43628879	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135937	exon7	c.G872A	p.R291Q	.	.	.
ELAVL3	1995	broad.mit.edu	36	19	11429959	11429959	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001420	exon5	c.G630A	p.T210T	.	.	.
ZNF554	115196	broad.mit.edu	36	19	2785073	2785073	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001102651	exon5	c.T840A	p.N280K	.	.	.
PLIN4	729359	broad.mit.edu	36	19	4462750	4462750	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080400	exon3	c.C2180T	p.A727V	.	.	.
MEGF8	1954	broad.mit.edu	36	19	47540735	47540735	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001410	exon12	c.G2007A	p.T669T	.	.	.
ZNF114	163071	broad.mit.edu	36	19	53481893	53481893	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153608	exon5	c.G1200A	p.S400S	.	.	.
CCDC114	93233	broad.mit.edu	36	19	53492454	53492454	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144577	exon14	c.C1604T	p.T535I	.	.	.
TSKS	60385	broad.mit.edu	36	19	54958148	54958148	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021733	exon1	c.G169C	p.G57R	.	.	.
VSTM1	284415	broad.mit.edu	36	19	59236102	59236102	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198481	exon9	c.C636T	p.S212S	.	.	.
ZSCAN5A	79149	broad.mit.edu	36	19	61425150	61425150	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024303	exon5	c.C1097T	p.T366M	.	.	.
ZNF329	79673	broad.mit.edu	36	19	63331839	63331839	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024620	exon4	c.A844C	p.T282P	.	.	.
ACTL9	284382	broad.mit.edu	36	19	8669060	8669060	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178525	exon1	c.G992A	p.R331H	.	.	.
GATAD2A	54815	broad.mit.edu	36	19	19464499	19464499	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017660	exon4	c.512delA	p.Q171fs	.	.	.
ATXN7L2	127002	broad.mit.edu	36	1	109835202	109835203	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153340	exon10	c.1494_1495insC	p.M498fs	.	.	.
RSBN1	54665	broad.mit.edu	36	1	114110543	114110543	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018364	exon7	c.G1991A	p.R664H	.	.	.
FMO5	2330	broad.mit.edu	36	1	145154081	145154081	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144830	exon2	c.C191T	p.S64F	.	.	.
C1orf54	79630	broad.mit.edu	36	1	148515658	148515658	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024579	exon4	c.G294A	p.T98T	.	.	.
FLG	2312	broad.mit.edu	36	1	150548419	150548419	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002016	exon3	c.G5567A	p.R1856H	.	.	.
CD5L	922	broad.mit.edu	36	1	156070878	156070878	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005894	exon4	c.G661T	p.G221W	.	.	.
ATP1A2	477	broad.mit.edu	36	1	158372784	158372784	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000702	exon18	c.G2563A	p.G855R	.	.	.
FAM58B	339521	broad.mit.edu	36	1	198449516	198449516	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001105517	exon1	c.C202A	p.L68M	.	.	.
TBCE	6905	broad.mit.edu	36	1	233678651	233678651	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001079515	exon17	c.T1535G	p.L512X	.	.	.
RYR2	6262	broad.mit.edu	36	1	235796595	235796595	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001035	exon28	c.C3320T	p.T1107M	.	.	.
OR14A16	284532	broad.mit.edu	36	1	246045378	246045378	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001966	exon1	c.C277A	p.L93I	.	.	.
OR2T6	254879	broad.mit.edu	36	1	246618295	246618295	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005471	exon1	c.G763T	p.A255S	.	.	.
PTPRU	10076	broad.mit.edu	36	1	29478713	29478713	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005704	exon10	c.C1722T	p.G574G	.	.	.
C1orf87	127795	broad.mit.edu	36	1	60248659	60248659	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152377	exon9	c.G1185A	p.L395L	.	.	.
HFM1	164045	broad.mit.edu	36	1	91553960	91553960	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001017975	exon28	c.C3140T	p.T1047M	.	.	.
GZF1	64412	broad.mit.edu	36	20	23293357	23293357	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022482	exon1	c.G337A	p.A113T	.	.	.
TP53TG5	27296	broad.mit.edu	36	20	43437187	43437188	+	Missense_Mutation	DNP	AC	TG	TG	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	AC	AC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014477	exon4	c.673_674CA	.	.	.	.
CDH26	60437	broad.mit.edu	36	20	57997420	57997420	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_177980	exon9	c.G1090A	p.V364I	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24752789	24752789	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032608	exon43	c.G6849A	p.T2283T	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165860705	165860705	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040143	exon1	c.G126A	p.K42K	.	.	.
TTN	7273	broad.mit.edu	36	2	179348478	179348478	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133379	exon28	c.C6358T	p.R2120W	.	.	.
SLC19A3	80704	broad.mit.edu	36	2	228271888	228271889	+	Missense_Mutation	DNP	CA	TT	TT	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025243	exon3	c.786_787AA	.	.	.	.
GPR55	9290	broad.mit.edu	36	2	231483597	231483597	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005683	exon2	c.G325C	p.V109L	.	.	.
OR6B3	150681	broad.mit.edu	36	2	240633382	240633382	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173351	exon1	c.C781T	p.R261W	.	.	.
LHCGR	3973	broad.mit.edu	36	2	48768794	48768794	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000233	exon11	c.T1646G	p.I549S	.	.	.
TSGA10	80705	broad.mit.edu	36	2	99086906	99086906	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025244	exon10	c.C567T	p.T189T	.	.	.
WDR49	151790	broad.mit.edu	36	3	168731739	168731740	+	In_Frame_Ins	INS	-	AGA	AGA	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	-	-	-	AGA	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178824	exon9	c.1020_1021insTCT	p.L340delinsLL	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131769687	131769687	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001102608	exon5	c.C1950A	p.S650R	.	.	.
EPHB1	2047	broad.mit.edu	36	3	136152923	136152923	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004441	exon3	c.C144T	p.Y48Y	.	.	.
PPP2R3A	5523	broad.mit.edu	36	3	137205014	137205014	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002718	exon2	c.G1984A	p.E662K	.	.	.
TGFBR2	7048	broad.mit.edu	36	3	30707961	30707961	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003242	exon7	c.G1570A	p.D524N	.	.	.
CADPS	8618	broad.mit.edu	36	3	62476839	62476839	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_183393	exon16	c.G2465A	p.R822H	.	.	.
SRGAP3	9901	broad.mit.edu	36	3	9030203	9030203	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014850	exon17	c.G1936A	p.D646N	.	.	.
ADAMTS3	9508	broad.mit.edu	36	4	73375502	73375502	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014243	exon20	c.C2865T	p.P955P	.	.	.
SHROOM3	57619	broad.mit.edu	36	4	77880019	77880020	+	Missense_Mutation	DNP	GT	AG	AG	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020859	exon5	c.1669_1670AG	.	.	.	.
APC	324	broad.mit.edu	36	5	112201993	112201994	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000038	exon16	c.2803_2804insA	p.Y935_N936delinsX	 APC,large_intestine,colon,Substitution - Nonsense,-2 	.	.
HINT1	3094	broad.mit.edu	36	5	130526175	130526175	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005340	exon2	c.G205T	p.D69Y	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13903794	13903794	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001369	exon31	c.A5081T	p.D1694V	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13972391	13972391	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001369	exon7	c.G869A	p.W290X	.	.	.
SLC35A4	113829	broad.mit.edu	36	5	139926942	139926942	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080670	exon3	c.A4T	p.S2C	.	.	.
FAT2	2196	broad.mit.edu	36	5	150867061	150867062	+	Missense_Mutation	DNP	CC	AG	AG	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001447	exon22	c.12363_12364CT	.	.	.	.
DHX29	54505	broad.mit.edu	36	5	54615309	54615309	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019030	exon11	c.A1444G	p.M482V	.	.	.
PHACTR1	221692	broad.mit.edu	36	6	13161722	13161722	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030948	exon4	c.C390T	p.S130S	.	.	.
CNKSR3	154043	broad.mit.edu	36	6	154769461	154769461	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173515	exon13	c.C1387T	p.R463W	.	.	.
PACRG	135138	broad.mit.edu	36	6	163069310	163069310	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080378	exon2	c.C53T	p.P18L	.	.	.
RPS6KA2	6196	broad.mit.edu	36	6	166763943	166763943	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021135	exon16	c.C1569A	p.L523L	.	.	.
DLL1	28514	broad.mit.edu	36	6	170437311	170437311	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005618	exon5	c.C671T	p.P224L	.	.	.
STK19	8859	broad.mit.edu	36	6	32047816	32047816	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004197	exon1	c.T64C	p.S22P	.	.	.
PKHD1	5314	broad.mit.edu	36	6	52022917	52022917	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_170724	exon22	c.C2276T	p.A759V	.	.	.
MUC17	140453	broad.mit.edu	36	7	100472862	100472862	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040105	exon3	c.A11445T	p.L3815F	.	.	.
ABCF2	10061	broad.mit.edu	36	7	150543075	150543075	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005692	exon14	c.C1557T	p.D519D	.	.	.
ITGB8	3696	broad.mit.edu	36	7	20410828	20410828	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002214	exon11	c.T1740G	p.G580G	.	.	.
CRHR2	1395	broad.mit.edu	36	7	30673395	30673395	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001883	exon3	c.C289A	p.Q97K	.	.	.
BMPER	168667	broad.mit.edu	36	7	34159383	34159383	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133468	exon15	c.C2031A	p.I677I	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48590373	48590373	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152701	exon54	c.G14199A	p.P4733P	.	.	.
CCZ1	51622	broad.mit.edu	36	7	5906514	5906514	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015622	exon2	c.G194A	p.C65Y	.	.	.
TG	7038	broad.mit.edu	36	8	133994637	133994637	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003235	exon20	c.G4323T	p.S1441S	.	.	.
SGCZ	137868	broad.mit.edu	36	8	14010078	14010078	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139167	exon6	c.G585A	p.T195T	.	.	.
C8orf41	80185	broad.mit.edu	36	8	33480497	33480497	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025115	exon5	c.T1251G	p.T417T	.	.	.
DFNB31	25861	broad.mit.edu	36	9	116306402	116306403	+	Missense_Mutation	DNP	GT	AC	AC	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015404	exon1	c.500_501GT	.	.	.	.
C9orf98	158067	broad.mit.edu	36	9	134740365	134740365	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152572	exon2	c.A127C	p.I43L	.	.	.
C9orf93	203238	broad.mit.edu	36	9	15767817	15767817	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173550	exon19	c.C2891T	p.P964L	.	.	.
ROR2	4920	broad.mit.edu	36	9	93533154	93533155	+	Missense_Mutation	DNP	GG	CT	CT	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004560	exon7	c.1041_1042AG	.	.	.	.
MORF4L2	9643	broad.mit.edu	36	X	102818357	102818357	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142429	exon5	c.C255T	p.N85N	.	.	.
BRWD3	254065	broad.mit.edu	36	X	79819229	79819229	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153252	exon41	c.C4944A	p.T1648T	.	.	.
PCDH11Y	83259	broad.mit.edu	36	Y	5027268	5027268	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032971	exon5	c.G1616A	p.R539H	.	.	.