Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ZWINT	11130	broad.mit.edu	36	10	57788654	57788654	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007057	exon6	c.A541T	p.T181S	.	.	.
CTNNA3	29119	broad.mit.edu	36	10	68205229	68205229	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013266	exon8	c.G1107A	p.K369K	.	.	.
IFIT1B	439996	broad.mit.edu	36	10	91133721	91133721	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010987	exon2	c.C671T	p.A224V	.	.	.
OR8B4	283162	broad.mit.edu	36	11	123799487	123799487	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005196	exon1	c.G491A	p.R164Q	.	.	.
TRIM44	54765	broad.mit.edu	36	11	35641461	35641461	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017583	exon1	c.G226T	p.A76S	.	.	.
TPP1	1200	broad.mit.edu	36	11	6594578	6594578	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000391	exon7	c.G776A	p.R259H	.	.	.
PRKRIR	5612	broad.mit.edu	36	11	75740911	75740911	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004705	exon5	c.C931T	p.H311Y	.	.	.
NAB2	4665	broad.mit.edu	36	12	55771716	55771717	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	-	-	-	C	-	C	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005967	exon2	c.625_626insC	p.S209fs	.	.	.
WSCD2	9671	broad.mit.edu	36	12	107114118	107114118	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014653	exon2	c.C379T	p.R127X	.	.	.
WSCD2	9671	broad.mit.edu	36	12	107145010	107145010	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014653	exon6	c.G918A	p.A306A	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111105336	111105336	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001109662	exon61	c.A10381G	p.I3461V	.	.	.
PLEKHA5	54477	broad.mit.edu	36	12	19410187	19410187	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019012	exon24	c.G3133A	p.A1045T	.	.	.
KCNA5	3741	broad.mit.edu	36	12	5024137	5024137	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002234	exon1	c.C563T	p.P188L	.	.	.
KRT4	3851	broad.mit.edu	36	12	51494116	51494116	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002272	exon1	c.T216C	p.S72S	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28753977	28753977	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001033602	exon4	c.G2811A	p.A937A	.	.	.
EIF2AK4	440275	broad.mit.edu	36	15	38056223	38056224	+	Frame_Shift_Ins	INS	-	CACT	CACT	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001013703	exon12	c.2135_2136insCACT	p.S712fs	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22472506	22472506	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018958	exon1	c.G399A	p.P133P	.	.	.
MGA	23269	broad.mit.edu	36	15	39839897	39839897	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164273	exon20	c.C7276G	p.R2426G	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49544285	49544285	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015263	exon32	c.G7684T	p.D2562Y	.	.	.
CNTNAP4	85445	broad.mit.edu	36	16	74946843	74946843	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033401	exon3	c.C323A	p.A108D	.	.	.
NAGLU	4669	broad.mit.edu	36	17	37946748	37946748	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000263	exon5	c.C1019A	p.A340E	.	.	.
INTS2	57508	broad.mit.edu	36	17	57304538	57304538	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020748	exon20	c.A2672G	p.Y891C	.	.	.
ACAP1	9744	broad.mit.edu	36	17	7180799	7180799	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014716	exon1	c.G22A	p.E8K	.	.	.
ROCK1	6093	broad.mit.edu	36	18	16802758	16802758	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005406	exon25	c.C2976T	p.I992I	.	.	.
CHST9	83539	broad.mit.edu	36	18	22750528	22750528	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031422	exon6	c.G1025A	p.R342H	.	.	.
SMAD2	4087	broad.mit.edu	36	18	43622209	43622209	+	Nonsense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135937	exon10	c.C1301G	p.S434X	.	.	.
ZNF417	147687	broad.mit.edu	36	19	63112125	63112125	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152475	exon3	c.T1333A	p.F445I	.	.	.
COL5A3	50509	broad.mit.edu	36	19	9949361	9949361	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015719	exon42	c.G3035A	p.R1012H	.	.	.
NLRP8	126205	broad.mit.edu	36	19	61157764	61157766	+	In_Frame_Del	DEL	CTT	-	-	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	CTT	CTT	CTT	-	CTT	CTT	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_176811	exon3	c.528_530del	p.176_177del	.	.	.
OLFM3	118427	broad.mit.edu	36	1	102042912	102042912	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_058170	exon6	c.T847A	p.Y283N	.	.	.
NRAS	4893	broad.mit.edu	36	1	115060268	115060268	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002524	exon2	c.G37C	p.G13R	 NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-2 	.	.
SCNM1	79005	broad.mit.edu	36	1	149406270	149406270	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024041	exon4	c.G261A	p.Q87Q	.	.	.
FLG	2312	broad.mit.edu	36	1	150551668	150551668	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002016	exon3	c.A2318G	p.Q773R	.	.	.
UHMK1	127933	broad.mit.edu	36	1	160758918	160758918	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175866	exon8	c.C1214T	p.P405L	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184379995	184379995	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031935	exon90	c.G13992T	p.Q4664H	.	.	.
ATP2B4	493	broad.mit.edu	36	1	201946636	201946636	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001396	exon12	c.G1808A	p.R603Q	.	.	.
USH2A	7399	broad.mit.edu	36	1	213983224	213983224	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_206933	exon59	c.C11466T	p.S3822S	.	.	.
MARK1	4139	broad.mit.edu	36	1	218893131	218893131	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018650	exon16	c.G1802A	p.R601Q	.	.	.
NUP133	55746	broad.mit.edu	36	1	227700535	227700535	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018230	exon6	c.G790T	p.G264X	.	.	.
PUM1	9698	broad.mit.edu	36	1	31210232	31210232	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001020658	exon14	c.C2199T	p.N733N	.	.	.
ZNF335	63925	broad.mit.edu	36	20	44025916	44025917	+	Missense_Mutation	DNP	CT	AA	AA	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022095	exon8	c.1222_1223TT	.	.	.	.
PAK7	57144	broad.mit.edu	36	20	9468203	9468203	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_177990	exon10	c.C2066T	p.A689V	.	.	.
KRTAP11-1	337880	broad.mit.edu	36	21	31175513	31175513	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175858	exon1	c.C202A	p.P68T	.	.	.
MFSD9	84804	broad.mit.edu	36	2	102701615	102701615	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032718	exon6	c.T1121A	p.M374K	.	.	.
RBM43	375287	broad.mit.edu	36	2	151816304	151816304	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198557	exon4	c.C436T	p.P146S	.	.	.
SNRNP27	11017	broad.mit.edu	36	2	69978027	69978027	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006857	exon4	c.G283A	p.G95S	.	.	.
ADD2	119	broad.mit.edu	36	2	70757454	70757454	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001185054	exon13	c.C1575T	p.A525A	.	.	.
TMEM39A	55254	broad.mit.edu	36	3	120636338	120636338	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018266	exon8	c.C1194T	p.N398N	.	.	.
GRIP2	80852	broad.mit.edu	36	3	14537000	14537000	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080423	exon9	c.C1052T	p.T351M	.	.	.
SLC7A14	57709	broad.mit.edu	36	3	171701827	171701827	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020949	exon3	c.C306T	p.G102G	.	.	.
TBCCD1	55171	broad.mit.edu	36	3	187756938	187756938	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001134415	exon4	c.A813C	p.T271T	.	.	.
MUC20	200958	broad.mit.edu	36	3	196939041	196939041	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001098516	exon2	c.G1278A	p.A426A	.	.	.
CCR9	10803	broad.mit.edu	36	3	45917896	45917896	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006641	exon2	c.C576T	p.S192S	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153466738	153466738	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018315	exon9	c.G1274A	p.R425H	 FBXW7,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-1 	.	.
GPR125	166647	broad.mit.edu	36	4	21998836	21998836	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_145290	exon19	c.G3556A	p.V1186I	.	.	.
KIT	3815	broad.mit.edu	36	4	55299385	55299385	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000222	exon21	c.C2836T	p.R946X	.	.	.
EVC2	132884	broad.mit.edu	36	4	5615594	5615594	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001166136	exon22	c.A3569G	p.E1190G	.	.	.
APC	324	broad.mit.edu	36	5	112182841	112182841	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon8	c.C1159T	p.R387X	 APC,large_intestine,NS,Substitution - Nonsense,0 	.	.
PCDHA13	56136	broad.mit.edu	36	5	140244267	140244267	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031865	exon1	c.G2230A	p.A744T	.	.	.
PCDHB10	56126	broad.mit.edu	36	5	140553785	140553785	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018930	exon1	c.G1476A	p.P492P	.	.	.
PCDHGA3	56112	broad.mit.edu	36	5	140703999	140703999	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018916	exon1	c.C215T	p.T72M	.	.	.
TCERG1	10915	broad.mit.edu	36	5	145870329	145870329	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040006	exon21	c.T3165A	p.D1055E	.	.	.
ADAMTS2	9509	broad.mit.edu	36	5	178473768	178473768	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014244	exon22	c.C3342T	p.N1114N	.	.	.
APC	324	broad.mit.edu	36	5	112203858	112203859	+	Frame_Shift_Del	DEL	TA	-	-	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	TA	TA	TA	TA	TA	TA	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.4614_4615del	p.1538_1539del	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127838461	127838461	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012279	exon6	c.G2403A	p.A801A	.	.	.
IYD	389434	broad.mit.edu	36	6	150731982	150731982	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164695	exon1	c.G122A	p.R41H	.	.	.
C6orf118	168090	broad.mit.edu	36	6	165631542	165631542	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144980	exon5	c.G975A	p.P325P	.	.	.
HIST1H1A	3024	broad.mit.edu	36	6	26125492	26125492	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005325	exon1	c.G448A	p.V150I	.	.	.
ZSCAN16	80345	broad.mit.edu	36	6	28205674	28205674	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025231	exon4	c.T1014C	p.H338H	.	.	.
HSPA1L	3305	broad.mit.edu	36	6	31886764	31886764	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005527	exon2	c.C965T	p.A322V	.	.	.
ITPR3	3710	broad.mit.edu	36	6	33756344	33756344	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002224	exon33	c.C4385T	p.P1462L	.	.	.
COL9A1	1297	broad.mit.edu	36	6	71068430	71068430	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001851	exon2	c.G83A	p.R28H	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107543800	107543800	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007356	exon3	c.G77T	p.G26V	.	.	.
OR2A12	346525	broad.mit.edu	36	7	143423863	143423863	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004135	exon1	c.C730T	p.L244F	.	.	.
ZNF777	27153	broad.mit.edu	36	7	148760262	148760262	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015694	exon6	c.C2034T	p.S678S	.	.	.
IGF2BP3	10643	broad.mit.edu	36	7	23357460	23357460	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006547	exon6	c.G672T	p.Q224H	.	.	.
C7orf16	10842	broad.mit.edu	36	7	31703162	31703162	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006658	exon4	c.C294A	p.G98G	.	.	.
GTF2IRD2	84163	broad.mit.edu	36	7	73849972	73849972	+	Silent	SNP	C	T	T	rs707394	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173537	exon16	c.G1815A	p.K605K	.	.	.
RIMS2	9699	broad.mit.edu	36	8	105018097	105018097	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001100117	exon13	c.C2518T	p.R840X	.	.	.
ADAM2	2515	broad.mit.edu	36	8	39726356	39726356	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001464	exon17	c.G1862A	p.C621Y	.	.	.
CHD7	55636	broad.mit.edu	36	8	61817273	61817273	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017780	exon2	c.C728A	p.P243H	.	.	.
ROR2	4920	broad.mit.edu	36	9	93526187	93526188	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004560	exon9	c.2410_2411insC	p.M804fs	.	.	.
TOPORS	10210	broad.mit.edu	36	9	32533484	32533484	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001195622	exon2	c.C844T	p.R282X	.	.	.
INSL6	11172	broad.mit.edu	36	9	5175596	5175596	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007179	exon1	c.C7T	p.R3W	.	.	.
GNA14	9630	broad.mit.edu	36	9	79228763	79228763	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004297	exon7	c.C1020G	p.V340V	.	.	.
GPRASP2	114928	broad.mit.edu	36	X	101858935	101858935	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004051	exon5	c.A2482G	p.N828D	.	.	.
DMD	1756	broad.mit.edu	36	X	31896392	31896392	+	Nonsense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004011	exon17	c.C2576G	p.S859X	.	.	.
FAM47C	442444	broad.mit.edu	36	X	36936607	36936607	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001013736	exon1	c.C203T	p.T68M	.	.	.
AWAT1	158833	broad.mit.edu	36	X	69376341	69376341	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001013579	exon6	c.G664C	p.E222Q	.	.	.