Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ANKRD30A	91074	broad.mit.edu	36	10	37528687	37528687	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052997	exon30	c.C2575T	p.Q859X	.	.	.
PHYHIPL	84457	broad.mit.edu	36	10	60666294	60666294	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001143774	exon3	c.A271G	p.T91A	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105279801	105279801	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001077244	exon8	c.C937T	p.R313X	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120207887	120207887	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014619	exon5	c.G628A	p.D210N	.	.	.
OR5I1	10798	broad.mit.edu	36	11	55460320	55460320	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006637	exon1	c.A133T	p.I45F	.	.	.
TRIM6-TRIM34	445372	broad.mit.edu	36	11	5621093	5621093	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001003827	exon8	c.C1045T	p.H349Y	.	.	.
CTNND1	1500	broad.mit.edu	36	11	57320642	57320642	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001331	exon6	c.C558T	p.G186G	.	.	.
GRM5	2915	broad.mit.edu	36	11	87940496	87940496	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000842	exon8	c.G2003A	p.R668H	.	.	.
CD151	977	broad.mit.edu	36	11	827543	827543	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039490	exon6	c.540delC	p.V180fs	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129495713	129495713	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015347	exon7	c.G585A	p.T195T	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129501722	129501722	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015347	exon5	c.G424A	p.G142S	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42049362	42049362	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025003	exon37	c.C5536T	p.Q1846X	.	.	.
KRT74	121391	broad.mit.edu	36	12	51253418	51253418	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175053	exon1	c.C411T	p.R137R	.	.	.
SMUG1	23583	broad.mit.edu	36	12	52863796	52863796	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014311	exon3	c.C196T	p.R66C	.	.	.
KCNC2	3747	broad.mit.edu	36	12	73723180	73723180	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139137	exon5	c.C1889G	p.S630C	.	.	.
NALCN	259232	broad.mit.edu	36	13	100557855	100557855	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052867	exon22	c.C2563T	p.R855X	.	.	.
ATP11A	23250	broad.mit.edu	36	13	112578221	112578221	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015205	exon28	c.C3292T	p.R1098W	.	.	.
VRTN	55237	broad.mit.edu	36	14	73894215	73894216	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018228	exon2	c.976_977insG	p.R326fs	.	.	.
CDC42BPB	9578	broad.mit.edu	36	14	102535732	102535732	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006035	exon5	c.G519A	p.P173P	.	.	.
OR4N4	283694	broad.mit.edu	36	15	19884202	19884202	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005241	exon1	c.C366T	p.R122R	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22473579	22473579	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018958	exon1	c.C1472T	p.A491V	.	.	.
PLCB2	5330	broad.mit.edu	36	15	38373828	38373828	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004573	exon19	c.G1992A	p.P664P	.	.	.
ADAMTSL3	57188	broad.mit.edu	36	15	82164206	82164206	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207517	exon3	c.G131A	p.G44E	.	.	.
IDH2	3418	broad.mit.edu	36	15	88429076	88429076	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002168	exon10	c.C1247T	p.A416V	.	.	.
NOMO1	23420	broad.mit.edu	36	16	14877848	14877848	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014287	exon21	c.G2488A	p.V830I	.	.	.
MAPK3	5595	broad.mit.edu	36	16	30035511	30035511	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002746	exon8	c.C1119T	p.P373P	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3721473	3721473	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004380	exon30	c.C4893A	p.V1631V	.	.	.
CCDC135	84229	broad.mit.edu	36	16	56293485	56293485	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032269	exon5	c.A641G	p.D214G	.	.	.
WWOX	51741	broad.mit.edu	36	16	77024110	77024110	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016373	exon8	c.C1016G	p.T339R	.	.	.
ANKRD11	29123	broad.mit.edu	36	16	87875915	87875915	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013275	exon9	c.C4536T	p.R1512R	.	.	.
TP53	7157	broad.mit.edu	36	17	7517580	7517581	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126116	exon5	c.595_596insT	p.Q199fs	 TP53,lung,NS,Substitution - Nonsense,0 	.	.
NCOR1	9611	broad.mit.edu	36	17	15914460	15914460	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001190440	exon30	c.G4305A	p.P1435P	.	.	.
MPRIP	23164	broad.mit.edu	36	17	16998370	16998370	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015134	exon13	c.C1391T	p.S464L	.	.	.
LIG3	3980	broad.mit.edu	36	17	30334361	30334361	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013975	exon2	c.C224T	p.P75L	.	.	.
GJC1	10052	broad.mit.edu	36	17	40238400	40238400	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005497	exon3	c.C312T	p.H104H	.	.	.
EPX	8288	broad.mit.edu	36	17	53631489	53631489	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000502	exon8	c.C1210T	p.R404C	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70718299	70718299	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017757	exon4	c.C5036T	p.T1679M	.	.	.
DNMT1	1786	broad.mit.edu	36	19	10128124	10128124	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130823	exon18	c.G1342A	p.E448K	.	.	.
GNA15	2769	broad.mit.edu	36	19	3102799	3102799	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002068	exon4	c.G580A	p.E194K	.	.	.
RYR1	6261	broad.mit.edu	36	19	43630912	43630912	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001042723	exon10	c.C878A	p.T293N	.	.	.
XRCC1	7515	broad.mit.edu	36	19	48747591	48747591	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006297	exon10	c.C1171T	p.R391C	.	.	.
ZNF226	7769	broad.mit.edu	36	19	49373212	49373212	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001032372	exon6	c.G1957A	p.G653S	.	.	.
ZNF671	79891	broad.mit.edu	36	19	62924234	62924234	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024833	exon4	c.C1032T	p.S344S	.	.	.
VAV1	7409	broad.mit.edu	36	19	6773292	6773292	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005428	exon5	c.C510T	p.G170G	.	.	.
ARV1	64801	broad.mit.edu	36	1	229192502	229192503	+	Frame_Shift_Ins	INS	-	TG	TG	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	-	-	-	TG	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022786	exon3	c.318_319insTG	p.F106fs	.	.	.
CSF1	1435	broad.mit.edu	36	1	110267713	110267713	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_172210	exon6	c.C947A	p.P316H	.	.	.
KCNA3	3738	broad.mit.edu	36	1	111018101	111018101	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002232	exon1	c.G854A	p.R285H	.	.	.
NOTCH2	4853	broad.mit.edu	36	1	120269807	120269807	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024408	exon25	c.C4155T	p.H1385H	.	.	.
FLG	2312	broad.mit.edu	36	1	150542170	150542170	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002016	exon3	c.C11816T	p.A3939V	.	.	.
IGSF21	84966	broad.mit.edu	36	1	18564336	18564336	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032880	exon6	c.C573T	p.D191D	.	.	.
NFASC	23114	broad.mit.edu	36	1	203245423	203245423	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001160331	exon25	c.C3252T	p.R1084R	.	.	.
RYR2	6262	broad.mit.edu	36	1	236013823	236013823	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001035	exon90	c.C12188T	p.T4063M	.	.	.
KIF2C	11004	broad.mit.edu	36	1	44994489	44994489	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006845	exon10	c.G970A	p.V324I	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40168886	40168886	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133170	exon25	c.G3401A	p.C1134Y	.	.	.
ADNP	23394	broad.mit.edu	36	20	48941497	48941497	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015339	exon5	c.A3161G	p.D1054G	.	.	.
CDH4	1002	broad.mit.edu	36	20	59936666	59936666	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001794	exon12	c.G1795A	p.G599R	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31448449	31448449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003253	exon18	c.G3158A	p.R1053H	.	.	.
MX2	4600	broad.mit.edu	36	21	41673899	41673899	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002463	exon4	c.C528T	p.T176T	.	.	.
COL18A1	80781	broad.mit.edu	36	21	45700066	45700066	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030582	exon1	c.194delC	p.T65fs	.	.	.
PNPLA3	80339	broad.mit.edu	36	22	42654294	42654294	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025225	exon2	c.G334A	p.G112S	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	124978585	124978585	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_130773	exon8	c.G1306A	p.V436I	.	.	.
CYP27C1	339761	broad.mit.edu	36	2	127675231	127675231	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001665	exon3	c.C325T	p.R109C	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165880455	165880455	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040143	exon10	c.C1612T	p.R538C	.	.	.
TTN	7273	broad.mit.edu	36	2	179121384	179121384	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon167	c.G66019A	p.V22007I	.	.	.
CFLAR	8837	broad.mit.edu	36	2	201733483	201733483	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127183	exon9	c.C877A	p.L293I	.	.	.
MAP2	4133	broad.mit.edu	36	2	210267301	210267301	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002374	exon7	c.G2162T	p.G721V	.	.	.
SCLY	51540	broad.mit.edu	36	2	238655147	238655147	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016510	exon5	c.C543T	p.L181L	.	.	.
XDH	7498	broad.mit.edu	36	2	31462893	31462893	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000379	exon9	c.A684T	p.R228R	.	.	.
PRKD3	23683	broad.mit.edu	36	2	37371614	37371614	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005813	exon3	c.C460A	p.P154T	.	.	.
TMEM178	130733	broad.mit.edu	36	2	39797871	39797871	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152390	exon4	c.G870A	p.K290K	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50135668	50135668	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135659	exon21	c.G3857A	p.R1286H	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50172036	50172036	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138735	exon3	c.G542A	p.R181H	.	.	.
MXD1	4084	broad.mit.edu	36	2	69996820	69996820	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002357	exon2	c.G137A	p.R46Q	.	.	.
GPR87	53836	broad.mit.edu	36	3	152494813	152494813	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_023915	exon3	c.C911T	p.A304V	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38911103	38911103	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014139	exon15	c.G2760A	p.A920A	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38920506	38920506	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014139	exon12	c.G1696A	p.V566I	.	.	.
EDEM1	9695	broad.mit.edu	36	3	5230023	5230023	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014674	exon11	c.C1700A	p.P567Q	.	.	.
TTLL3	26140	broad.mit.edu	36	3	9829630	9829630	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025930	exon3	c.A481C	p.K161Q	.	.	.
QRFPR	84109	broad.mit.edu	36	4	122521018	122521018	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198179	exon1	c.G235A	p.V79I	.	.	.
NAA15	80155	broad.mit.edu	36	4	140477521	140477521	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_057175	exon3	c.G209A	p.R70H	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153464896	153464896	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018315	exon10	c.C1505T	p.S502L	 FBXW7,large_intestine,colon,Substitution - Missense,0 	.	.
FBXW7	55294	broad.mit.edu	36	4	153466694	153466694	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018315	exon9	c.G1318A	p.D440N	 FBXW7,large_intestine,colon,Substitution - Missense,0 	.	.
ASB5	140458	broad.mit.edu	36	4	177380493	177380493	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080874	exon3	c.G349A	p.A117T	.	.	.
TRIML1	339976	broad.mit.edu	36	4	189302277	189302277	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178556	exon5	c.C852T	p.F284F	.	.	.
APC	324	broad.mit.edu	36	5	112203548	112203549	+	Frame_Shift_Ins	INS	-	TT	TT	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	-	-	-	TT	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000038	exon16	c.4358_4359insTT	p.P1453fs	 APC,upper_aerodigestive_tract,sinonasal_and_nasal_cavity,Substitution - Missense,+1 	.	.
FBXL7	23194	broad.mit.edu	36	5	15990257	15990257	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012304	exon4	c.C1438T	p.R480C	.	.	.
CDH10	1008	broad.mit.edu	36	5	24545660	24545660	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006727	exon7	c.T1028A	p.L343H	.	.	.
C6	729	broad.mit.edu	36	5	41208155	41208155	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000065	exon9	c.G1220A	p.R407H	.	.	.
TCOF1	6949	broad.mit.edu	36	5	149751848	149751856	+	In_Frame_Del	DEL	GACAGTGAG	-	-	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	GACAGTGAG	GACAGTGAG	GACAGTGAG	-	GACAGTGAG	GACAGTGAG	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135243	exon21	c.3433_3441del	p.1145_1147del	.	.	.
SIM1	6492	broad.mit.edu	36	6	101003969	101003969	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005068	exon5	c.C534T	p.G178G	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51620858	51620858	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138694	exon63	c.C11328A	p.S3776S	.	.	.
KLHL31	401265	broad.mit.edu	36	6	53627280	53627280	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001003760	exon2	c.C750T	p.Y250Y	.	.	.
CNR1	1268	broad.mit.edu	36	6	88911005	88911005	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001160259	exon2	c.G708A	p.A236A	.	.	.
CALN1	83698	broad.mit.edu	36	7	70890791	70890791	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031468	exon7	c.G691A	p.V231I	.	.	.
TXNDC3	51314	broad.mit.edu	36	7	37903095	37903097	+	In_Frame_Del	DEL	CCC	-	-	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	CCC	CCC	CCC	-	CCC	CCC	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016616	exon17	c.1643_1645del	p.548_549del	.	.	.
TMEM74	157753	broad.mit.edu	36	8	109866130	109866130	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153015	exon2	c.G374A	p.R125Q	.	.	.
CSMD3	114788	broad.mit.edu	36	8	114029265	114029265	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198123	exon9	c.A1438G	p.K480E	.	.	.
CHRNB3	1142	broad.mit.edu	36	8	42705982	42705982	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000749	exon5	c.C375T	p.F125F	.	.	.
CLVS1	157807	broad.mit.edu	36	8	62533459	62533459	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173519	exon5	c.C781A	p.L261I	.	.	.
SMC2	10592	broad.mit.edu	36	9	105931802	105931802	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006444	exon21	c.G2846T	p.G949V	.	.	.
ABCA1	19	broad.mit.edu	36	9	106633899	106633899	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005502	exon13	c.G1540T	p.A514S	.	.	.
PRPF4	9128	broad.mit.edu	36	9	115085515	115085515	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004697	exon6	c.C589T	p.R197X	.	.	.
ASTN2	23245	broad.mit.edu	36	9	118810315	118810315	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014010	exon6	c.G1315A	p.D439N	.	.	.
GFI1B	8328	broad.mit.edu	36	9	134852620	134852620	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135031	exon3	c.G231A	p.P77P	.	.	.
NPR2	4882	broad.mit.edu	36	9	35789668	35789668	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003995	exon3	c.C927T	p.F309F	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79032216	79032216	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001018037	exon16	c.A1447C	p.K483Q	.	.	.
ATP2B3	492	broad.mit.edu	36	X	152478499	152478499	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021949	exon16	c.G2744A	p.G915D	.	.	.
PCDH11Y	83259	broad.mit.edu	36	Y	4985168	4985168	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032971	exon4	c.G271A	p.G91R	.	.	.