Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
CNNM1	26507	broad.mit.edu	36	10	101110655	101110655	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020348	exon3	c.G1791A	p.S597S	.	.	.
HPS6	79803	broad.mit.edu	36	10	103816026	103816026	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024747	exon1	c.G805A	p.A269T	.	.	.
SEPHS1	22929	broad.mit.edu	36	10	13401215	13401215	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001195604	exon8	c.G899A	p.R300Q	.	.	.
SLC18A3	6572	broad.mit.edu	36	10	50490050	50490050	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003055	exon1	c.G1258A	p.V420I	.	.	.
CDH23	64072	broad.mit.edu	36	10	73123973	73123973	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022124	exon20	c.G2240A	p.R747H	.	.	.
GHITM	27069	broad.mit.edu	36	10	85902054	85902054	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014394	exon9	c.G1008A	p.M336I	.	.	.
CEP55	55165	broad.mit.edu	36	10	95252978	95252978	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018131	exon3	c.T302C	p.L101P	.	.	.
PHLDB1	23187	broad.mit.edu	36	11	118003426	118003426	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001144758	exon6	c.C677A	p.A226D	.	.	.
TECTA	7007	broad.mit.edu	36	11	120504083	120504083	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005422	exon8	c.C2187T	p.Y729Y	.	.	.
PXMP2	5827	broad.mit.edu	36	12	131791325	131791325	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018663	exon5	c.C567A	p.Y189X	.	.	.
SLCO1B3	28234	broad.mit.edu	36	12	20960223	20960223	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019844	exon15	c.A1884T	p.L628F	.	.	.
SLC12A1	6557	broad.mit.edu	36	15	46308782	46308782	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001184832	exon6	c.G829A	p.V277M	.	.	.
FBN1	2200	broad.mit.edu	36	15	46536166	46536166	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000138	exon44	c.A5382G	p.P1794P	.	.	.
SHC4	399694	broad.mit.edu	36	15	47042020	47042020	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_203349	exon1	c.C485T	p.S162L	.	.	.
DPP8	54878	broad.mit.edu	36	15	63577390	63577390	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017743	exon5	c.A580G	p.S194G	.	.	.
PIAS1	8554	broad.mit.edu	36	15	66166075	66166075	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016166	exon2	c.G402A	p.P134P	.	.	.
SH3GL3	6457	broad.mit.edu	36	15	82028330	82028330	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003027	exon4	c.G233A	p.R78Q	.	.	.
ACSM2B	348158	broad.mit.edu	36	16	20464014	20464014	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105069	exon10	c.C1247T	p.P416L	.	.	.
ZFHX3	463	broad.mit.edu	36	16	71386999	71386999	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006885	exon9	c.C7083T	p.D2361D	.	.	.
KRT17	3872	broad.mit.edu	36	17	37029377	37029377	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000422	exon8	c.C1294T	p.R432C	.	.	.
TUBG2	27175	broad.mit.edu	36	17	38068583	38068583	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016437	exon5	c.C466T	p.R156X	.	.	.
IGF2BP1	10642	broad.mit.edu	36	17	44470629	44470629	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006546	exon6	c.C502T	p.R168X	.	.	.
LRRC37A3	374819	broad.mit.edu	36	17	60322728	60322728	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199340	exon3	c.T1110C	p.S370S	.	.	.
TP53	7157	broad.mit.edu	36	17	7517830	7517830	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.C833G	p.P278R	 TP53,central_nervous_system,brain,Substitution - Missense,-1 	.	.
PKN1	5585	broad.mit.edu	36	19	14441323	14441323	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_213560	exon16	c.G2165A	p.R722H	.	.	.
CHST8	64377	broad.mit.edu	36	19	38955624	38955624	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127895	exon5	c.C1091T	p.A364V	.	.	.
DMKN	93099	broad.mit.edu	36	19	40694260	40694260	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033317	exon5	c.G811A	p.G271S	.	.	.
C3	718	broad.mit.edu	36	19	6648433	6648433	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000064	exon21	c.C2718T	p.G906G	.	.	.
PIAS3	10401	broad.mit.edu	36	1	144295896	144295896	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006099	exon12	c.G1506A	p.T502T	.	.	.
CACNA1S	779	broad.mit.edu	36	1	199297189	199297189	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000069	exon25	c.G3084A	p.A1028A	.	.	.
TFB2M	64216	broad.mit.edu	36	1	244771106	244771106	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022366	exon8	c.G1041A	p.A347A	.	.	.
OR2B11	127623	broad.mit.edu	36	1	245681388	245681388	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004492	exon1	c.G520A	p.G174R	.	.	.
C1orf94	84970	broad.mit.edu	36	1	34436100	34436100	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032884	exon2	c.G438A	p.M146I	.	.	.
CSTL1	128817	broad.mit.edu	36	20	23372629	23372629	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138283	exon3	c.G278A	p.R93K	.	.	.
TTLL9	164395	broad.mit.edu	36	20	29961238	29961238	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008409	exon6	c.G356A	p.R119Q	.	.	.
CDH4	1002	broad.mit.edu	36	20	59932083	59932083	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001794	exon10	c.G1554A	p.E518E	.	.	.
C20orf151	140893	broad.mit.edu	36	20	60425226	60425226	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080833	exon5	c.C298T	p.R100C	.	.	.
CHRNA4	1137	broad.mit.edu	36	20	61452475	61452475	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000744	exon5	c.C732G	p.L244L	.	.	.
KRTAP11-1	337880	broad.mit.edu	36	21	31175692	31175692	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175858	exon1	c.G23T	p.R8I	.	.	.
COL18A1	80781	broad.mit.edu	36	21	45735609	45735609	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030582	exon21	c.2650delG	p.G884fs	.	.	.
PIWIL3	440822	broad.mit.edu	36	22	23482589	23482589	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008496	exon5	c.G439A	p.V147I	.	.	.
TTN	7273	broad.mit.edu	36	2	179187896	179187896	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003319	exon88	c.G21488A	p.R7163H	.	.	.
COL3A1	1281	broad.mit.edu	36	2	189565882	189565882	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000090	exon15	c.G1021T	p.A341S	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1393745	1393745	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014461	exon17	c.G2152A	p.V718I	.	.	.
OTOL1	131149	broad.mit.edu	36	3	162704281	162704281	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080440	exon4	c.G1291A	p.V431I	.	.	.
UQCRC1	7384	broad.mit.edu	36	3	48618260	48618260	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003365	exon3	c.G244A	p.E82K	.	.	.
ADAM29	11086	broad.mit.edu	36	4	176135567	176135567	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130705	exon3	c.G2316T	p.V772V	.	.	.
UNC5C	8633	broad.mit.edu	36	4	96475690	96475690	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003728	exon2	c.C240G	p.N80K	.	.	.
APC	324	broad.mit.edu	36	5	112182862	112182862	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon8	c.C1180T	p.Q394X	.	.	.
APC	324	broad.mit.edu	36	5	112192515	112192515	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon12	c.C1636T	p.R546X	 APC,large_intestine,NS,Substitution - Nonsense,0 	.	.
ERAP2	64167	broad.mit.edu	36	5	96270574	96270574	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022350	exon14	c.C2166A	p.L722L	.	.	.
PPT2	9374	broad.mit.edu	36	6	32233447	32233448	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005155	exon6	c.597_598insG	p.N199fs	.	.	.
JARID2	3720	broad.mit.edu	36	6	15595683	15595683	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004973	exon6	c.G837A	p.S279S	.	.	.
ALDH5A1	7915	broad.mit.edu	36	6	24631132	24631132	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_170740	exon8	c.G1212T	p.K404N	.	.	.
NKAPL	222698	broad.mit.edu	36	6	28335906	28335906	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001007531	exon1	c.T778G	p.L260V	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110500556	110500556	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_177531	exon22	c.G2415A	p.G805G	.	.	.
TNFRSF11B	4982	broad.mit.edu	36	8	120014420	120014420	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002546	exon2	c.C331T	p.R111C	 TNFRSF11B,central_nervous_system,brain,Substitution - Missense,0 	.	.
TG	7038	broad.mit.edu	36	8	134176555	134176555	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003235	exon42	c.G7325T	p.C2442F	.	.	.
MOS	4342	broad.mit.edu	36	8	57188715	57188715	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005372	exon1	c.G381A	p.T127T	.	.	.
ENY2	56943	broad.mit.edu	36	8	110420797	110420797	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ZFP37	7539	broad.mit.edu	36	9	114845087	114845087	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003408	exon4	c.G1632A	p.P544P	.	.	.
DBC1	1620	broad.mit.edu	36	9	121040793	121040793	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014618	exon5	c.G646A	p.V216I	.	.	.
TMC1	117531	broad.mit.edu	36	9	74635388	74635388	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138691	exon23	c.C2230T	p.R744X	.	.	.
FAM70A	55026	broad.mit.edu	36	X	119329166	119329166	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001104545	exon1	c.G27T	p.R9R	.	.	.
CXorf59	286464	broad.mit.edu	36	X	36066470	36066470	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173695	exon10	c.C1228A	p.L410I	.	.	.