Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
C10orf79	80217	broad.mit.edu	36	10	105941955	105941955	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025145	exon12	c.G1538A	p.G513E	.	.	.
HABP2	3026	broad.mit.edu	36	10	115328452	115328452	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001177660	exon7	c.C567A	p.C189X	.	.	.
CUBN	8029	broad.mit.edu	36	10	17166301	17166301	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001081	exon17	c.G2276A	p.S759N	.	.	.
SYT15	83849	broad.mit.edu	36	10	46383886	46383887	+	Missense_Mutation	DNP	AG	GT	GT	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181519	exon7	c.1082_1083AC	.	.	.	.
C10orf71	118461	broad.mit.edu	36	10	50202083	50202083	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135196	exon3	c.C1487T	p.A496V	.	.	.
OGDHL	55753	broad.mit.edu	36	10	50616064	50616065	+	Missense_Mutation	DNP	AG	CC	CC	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001143996	exon18	c.2280_2281GG	.	.	.	.
JMJD1C	221037	broad.mit.edu	36	10	64619034	64619034	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004241	exon15	c.T5759C	p.I1920T	.	.	.
TET1	80312	broad.mit.edu	36	10	70002125	70002126	+	Missense_Mutation	DNP	GC	CT	CT	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030625	exon2	c.24_25CT	.	.	.	.
SLC29A3	55315	broad.mit.edu	36	10	72792139	72792139	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018344	exon6	c.A1196T	p.Q399L	.	.	.
PSAP	5660	broad.mit.edu	36	10	73251711	73251711	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001042465	exon9	c.G846C	p.M282I	.	.	.
GUCY1A2	2977	broad.mit.edu	36	11	106186344	106186344	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000855	exon5	c.G1277A	p.C426Y	.	.	.
DDB2	1643	broad.mit.edu	36	11	47211021	47211021	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000107	exon4	c.A537T	p.G179G	.	.	.
GLYATL2	219970	broad.mit.edu	36	11	58358773	58358773	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_145016	exon6	c.A590T	p.Q197L	.	.	.
MS4A10	341116	broad.mit.edu	36	11	60314454	60314454	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_206893	exon2	c.C70T	p.P24S	.	.	.
PRPF19	27339	broad.mit.edu	36	11	60427844	60427845	+	Missense_Mutation	DNP	GC	CT	CT	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014502	exon2	c.84_85AG	.	.	.	.
NPAS4	266743	broad.mit.edu	36	11	65948908	65948908	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178864	exon7	c.C1971A	p.G657G	.	.	.
FOLH1B	219595	broad.mit.edu	36	11	89044808	89044808	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153696	exon5	c.C287G	p.T96R	.	.	.
SCUBE2	57758	broad.mit.edu	36	11	9044021	9044021	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020974	exon7	c.G843C	p.L281L	.	.	.
UTP20	27340	broad.mit.edu	36	12	100251215	100251215	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014503	exon28	c.G3423A	p.Q1141Q	.	.	.
SSH1	54434	broad.mit.edu	36	12	107707025	107707025	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018984	exon15	c.C2018T	p.A673V	.	.	.
GIT2	9815	broad.mit.edu	36	12	108911963	108911963	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135214	exon3	c.G214C	p.A72P	.	.	.
MED13L	23389	broad.mit.edu	36	12	114913430	114913430	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015335	exon17	c.G3712T	p.A1238S	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129492889	129492889	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015347	exon8	c.A910G	p.T304A	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35T	p.G12V	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
PARP11	57097	broad.mit.edu	36	12	3801359	3801359	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020367	exon6	c.C489T	p.R163R	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42231228	42231228	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025003	exon2	c.C204T	p.S68S	.	.	.
FGF6	2251	broad.mit.edu	36	12	4413662	4413662	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020996	exon3	c.C607A	p.H203N	.	.	.
NCKAP1L	3071	broad.mit.edu	36	12	53211608	53211608	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001184976	exon24	c.A2521C	p.M841L	.	.	.
ARHGAP9	64333	broad.mit.edu	36	12	56152710	56152710	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080156	exon16	c.A1501T	p.M501L	.	.	.
NANOG	79923	broad.mit.edu	36	12	7838771	7838771	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024865	exon4	c.G731C	p.G244A	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8883034	8883034	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144670	exon10	c.C1029A	p.T343T	.	.	.
CCDC41	51134	broad.mit.edu	36	12	93285800	93285800	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016122	exon11	c.A1244T	p.H415L	.	.	.
ANKS1B	56899	broad.mit.edu	36	12	98690928	98690928	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152788	exon8	c.C1031A	p.S344X	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66698813	66698813	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020403	exon2	c.G1761C	p.K587N	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104487298	104487298	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138420	exon7	c.G5535A	p.S1845S	.	.	.
RAB15	376267	broad.mit.edu	36	14	64487532	64487532	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198686	exon4	c.A337G	p.T113A	.	.	.
PAPLN	89932	broad.mit.edu	36	14	72803286	72803288	+	Missense_Mutation	TNP	GGT	CTC	CTC	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	GGT	GGT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173462	exon24	c.3413_3415CTC	.	.	.	.
C14orf118	55668	broad.mit.edu	36	14	75690959	75690959	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017926	exon2	c.G500A	p.R167H	.	.	.
STON2	85439	broad.mit.edu	36	14	80813524	80813524	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033104	exon4	c.G1884T	p.R628S	.	.	.
TUBGCP4	27229	broad.mit.edu	36	15	41462978	41462978	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014444	exon7	c.G707T	p.R236I	.	.	.
ULK3	25989	broad.mit.edu	36	15	72921681	72921681	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099436	exon2	c.A236C	p.D79A	.	.	.
ALPK3	57538	broad.mit.edu	36	15	83201434	83201434	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020778	exon6	c.C3067A	p.P1023T	.	.	.
ACAN	176	broad.mit.edu	36	15	87185997	87185997	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135	exon5	c.G652A	p.E218K	.	.	.
WDR93	56964	broad.mit.edu	36	15	88046088	88046089	+	Missense_Mutation	DNP	AC	GT	GT	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	AC	AC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020212	exon2	c.107_108GT	.	.	.	.
ST8SIA2	8128	broad.mit.edu	36	15	90808373	90808373	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006011	exon6	c.C882A	p.T294T	.	.	.
ERN2	10595	broad.mit.edu	36	16	23609991	23609991	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033266	exon21	c.G2672A	p.G891E	.	.	.
SLC5A11	115584	broad.mit.edu	36	16	24830325	24830325	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052944	exon16	c.C1998T	p.C666C	.	.	.
GTF3C1	2975	broad.mit.edu	36	16	27452115	27452115	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001520	exon5	c.C847A	p.L283M	.	.	.
NUDT7	283927	broad.mit.edu	36	16	76333069	76333069	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105663	exon4	c.G438T	p.L146L	.	.	.
C16orf72	29035	broad.mit.edu	36	16	9104511	9104511	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014117	exon3	c.T477C	p.A159A	.	.	.
MLLT6	4302	broad.mit.edu	36	17	34125585	34125586	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005937	exon9	c.1014_1015insG	p.S338fs	.	.	.
KIAA0100	9703	broad.mit.edu	36	17	23989464	23989464	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014680	exon13	c.G1445A	p.R482Q	.	.	.
NEK8	284086	broad.mit.edu	36	17	24092359	24092359	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178170	exon13	c.C1869T	p.A623A	.	.	.
EFCAB5	374786	broad.mit.edu	36	17	25320312	25320312	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001145053	exon4	c.T400A	p.L134I	.	.	.
TAF15	8148	broad.mit.edu	36	17	31195885	31195885	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139215	exon15	c.G1469A	p.R490Q	.	.	.
MED24	9862	broad.mit.edu	36	17	35441322	35441323	+	Missense_Mutation	DNP	GC	TG	TG	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001079518	exon10	c.1022_1023CA	.	.	.	.
NR1D1	9572	broad.mit.edu	36	17	35506357	35506357	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021724	exon4	c.C469T	p.R157C	.	.	.
KRT33B	3884	broad.mit.edu	36	17	36774970	36774970	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002279	exon5	c.C859A	p.Q287K	.	.	.
ARL4D	379	broad.mit.edu	36	17	38832911	38832912	+	Missense_Mutation	DNP	CG	GT	GT	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	CG	CG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001661	exon2	c.285_286GT	.	.	.	.
HOXB2	3212	broad.mit.edu	36	17	43977180	43977180	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002145	exon1	c.A93G	p.T31T	.	.	.
EFCAB3	146779	broad.mit.edu	36	17	57814084	57814084	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173503	exon2	c.A12T	p.S4S	.	.	.
KIAA0195	9772	broad.mit.edu	36	17	71002613	71002613	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014738	exon20	c.C2631G	p.C877W	.	.	.
ACOX1	51	broad.mit.edu	36	17	71461158	71461159	+	Missense_Mutation	DNP	CG	GT	GT	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	CG	CG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007292	exon7	c.912_913AC	.	.	.	.
EVPL	2125	broad.mit.edu	36	17	71516913	71516914	+	Missense_Mutation	DNP	TC	CT	CT	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001988	exon22	c.3967_3968AG	.	.	.	.
EVPL	2125	broad.mit.edu	36	17	71517085	71517085	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001988	exon22	c.G3796A	p.V1266M	.	.	.
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	T	T	rs28934578	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.G524A	p.R175H	 TP53,lung,NS,Substitution - Missense,0 	.	.
NPC1	4864	broad.mit.edu	36	18	19375286	19375286	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000271	exon15	c.A2355C	p.L785F	.	.	.
ATP8B1	5205	broad.mit.edu	36	18	53473546	53473546	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005603	exon23	c.C2809G	p.L937V	.	.	.
CKM	1158	broad.mit.edu	36	19	50503552	50503553	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001824	exon6	c.732_733insG	p.G244fs	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17611252	17611252	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080421	exon23	c.G2939A	p.R980Q	.	.	.
PDE4C	5143	broad.mit.edu	36	19	18190239	18190240	+	Missense_Mutation	DNP	CT	TG	TG	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000923	exon11	c.1134_1135CA	.	.	.	.
USF2	7392	broad.mit.edu	36	19	40453192	40453192	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003367	exon5	c.T432G	p.A144A	.	.	.
RBM42	79171	broad.mit.edu	36	19	40820054	40820055	+	Missense_Mutation	DNP	GG	TT	TT	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024321	exon9	c.1290_1291TT	.	.	.	.
NPHS1	4868	broad.mit.edu	36	19	41024602	41024602	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004646	exon20	c.G2670A	p.T890T	.	.	.
RYR1	6261	broad.mit.edu	36	19	43685150	43685150	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001042723	exon48	c.G7778A	p.R2593H	.	.	.
CABP5	56344	broad.mit.edu	36	19	53225630	53225630	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019855	exon6	c.G518A	p.R173H	.	.	.
ZNF816	125893	broad.mit.edu	36	19	58151146	58151146	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001031665	exon3	c.T9C	p.R3R	.	.	.
NLRP13	126204	broad.mit.edu	36	19	61099226	61099226	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_176810	exon11	c.T3029C	p.L1010P	.	.	.
MARCH2	51257	broad.mit.edu	36	19	8397498	8397499	+	Missense_Mutation	DNP	GT	AG	AG	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005416	exon3	c.182_183AG	.	.	.	.
MUC16	94025	broad.mit.edu	36	19	8933479	8933479	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024690	exon3	c.T14967C	p.F4989F	.	.	.
ZNF266	10781	broad.mit.edu	36	19	9385298	9385298	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006631	exon11	c.C1303A	p.P435T	.	.	.
RPS11	6205	broad.mit.edu	36	19	54692599	54692602	+	Frame_Shift_Del	DEL	GCAC	-	-	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	GCAC	GCAC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001015	exon3	c.158_161del	p.53_54del	.	.	.
NTNG1	22854	broad.mit.edu	36	1	107668991	107668991	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001113228	exon3	c.G811A	p.V271I	.	.	.
SYT6	148281	broad.mit.edu	36	1	114481965	114481965	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_205848	exon3	c.G491A	p.R164H	.	.	.
PDPN	10630	broad.mit.edu	36	1	13783150	13783150	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006474	exon1	c.G263A	p.G88E	.	.	.
PIAS3	10401	broad.mit.edu	36	1	144292574	144292575	+	Missense_Mutation	DNP	GT	AC	AC	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006099	exon8	c.946_947AC	.	.	.	.
OR10K2	391107	broad.mit.edu	36	1	156656542	156656542	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004476	exon1	c.A739T	p.I247F	.	.	.
ATP13A2	23400	broad.mit.edu	36	1	17187503	17187504	+	Missense_Mutation	DNP	GC	AT	AT	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022089	exon24	c.2662_2663AT	.	.	.	.
CACNA1E	777	broad.mit.edu	36	1	179747207	179747207	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000721	exon3	c.C450T	p.F150F	.	.	.
PINK1	65018	broad.mit.edu	36	1	20847642	20847642	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032409	exon6	c.T1181A	p.I394N	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226546376	226546376	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052843	exon39	c.G10494T	p.Q3498H	.	.	.
ACTN2	88	broad.mit.edu	36	1	234948844	234948844	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001103	exon3	c.G269T	p.G90V	.	.	.
RYR2	6262	broad.mit.edu	36	1	235910428	235910428	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001035	exon62	c.T8945G	p.F2982C	.	.	.
CEP170	9859	broad.mit.edu	36	1	241421045	241421045	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001042405	exon8	c.T1006C	p.W336R	.	.	.
TRIM63	84676	broad.mit.edu	36	1	26260402	26260402	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032588	exon3	c.C343A	p.Q115K	.	.	.
KIAA0319L	79932	broad.mit.edu	36	1	35698495	35698495	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024874	exon9	c.C1425T	p.F475F	.	.	.
NPHP4	261734	broad.mit.edu	36	1	5915916	5915916	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015102	exon10	c.T1180A	p.W394R	.	.	.
TAS1R1	80835	broad.mit.edu	36	1	6559125	6559125	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_177540	exon3	c.A562C	p.N188H	.	.	.
CEP250	11190	broad.mit.edu	36	20	33544800	33544800	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007186	exon23	c.A3020T	p.D1007V	.	.	.
MANBAL	63905	broad.mit.edu	36	20	35378134	35378135	+	Missense_Mutation	DNP	CC	GG	GG	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001003897	exon3	c.160_161GG	.	.	.	.
WFDC8	90199	broad.mit.edu	36	20	43617906	43617906	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_130896	exon4	c.C293T	p.P98L	.	.	.
SLC2A10	81031	broad.mit.edu	36	20	44788142	44788143	+	Missense_Mutation	DNP	CC	GT	GT	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030777	exon2	c.1060_1061GT	.	.	.	.
SYCP2	10388	broad.mit.edu	36	20	57882450	57882450	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014258	exon34	c.A3411G	p.I1137M	.	.	.
DIDO1	11083	broad.mit.edu	36	20	60995808	60995809	+	Missense_Mutation	DNP	GC	AT	AT	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001193370	exon12	c.2755_2756AT	.	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21632714	21632714	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004540	exon8	c.G1033A	p.E345K	.	.	.
PCNT	5116	broad.mit.edu	36	21	46611030	46611030	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006031	exon15	c.C2713T	p.Q905X	.	.	.
APOBEC3D	140564	broad.mit.edu	36	22	37757821	37757821	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152426	exon6	c.C939T	p.T313T	.	.	.
SREBF2	6721	broad.mit.edu	36	22	40620824	40620824	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004599	exon13	c.C2432A	p.A811D	.	.	.
LONRF2	164832	broad.mit.edu	36	2	100278383	100278383	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198461	exon8	c.C1541T	p.P514L	.	.	.
FOXD4L1	200350	broad.mit.edu	36	2	113974004	113974004	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012184	exon1	c.C701G	p.P234R	.	.	.
ERCC3	2071	broad.mit.edu	36	2	127767705	127767706	+	Missense_Mutation	DNP	GG	CA	CA	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000122	exon2	c.87_88TG	.	.	.	.
SMPD4	55627	broad.mit.edu	36	2	130646894	130646894	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017951	exon6	c.T507C	p.S169S	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141468056	141468056	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018557	exon16	c.C2622T	p.S874S	.	.	.
GCG	2641	broad.mit.edu	36	2	162712219	162712219	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002054	exon3	c.C144T	p.N48N	.	.	.
ITGA6	3655	broad.mit.edu	36	2	173060331	173060331	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000210	exon15	c.C2064T	p.P688P	.	.	.
TTN	7273	broad.mit.edu	36	2	179184033	179184033	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon98	c.G23873T	p.G7958V	.	.	.
CPS1	1373	broad.mit.edu	36	2	211210670	211210671	+	Splice_Site	DNP	GT	AG	AG	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001122634	exon12	c.1335_1335AG	.	.	.	.
BCS1L	617	broad.mit.edu	36	2	219234461	219234462	+	Missense_Mutation	DNP	TT	GA	GA	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	TT	TT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004328	exon4	c.409_410GA	.	.	.	.
ATAD2B	54454	broad.mit.edu	36	2	23962130	23962130	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017552	exon5	c.C646T	p.R216X	.	.	.
HEATR5B	54497	broad.mit.edu	36	2	37101398	37101399	+	Missense_Mutation	DNP	AG	CA	CA	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019024	exon25	c.3938_3939TG	.	.	.	.
FILIP1L	11259	broad.mit.edu	36	3	101051671	101051671	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182909	exon5	c.A1539G	p.K513K	.	.	.
WDR5B	54554	broad.mit.edu	36	3	123616393	123616393	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019069	exon1	c.A673C	p.I225L	.	.	.
DBR1	51163	broad.mit.edu	36	3	139373234	139373234	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016216	exon3	c.G334A	p.V112M	.	.	.
SLC7A14	57709	broad.mit.edu	36	3	171699184	171699184	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020949	exon4	c.C725T	p.A242V	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1633A	p.E545K	 PIK3CA,urinary_tract,bladder,Substitution - Missense,0 	.	.
CTNNB1	1499	broad.mit.edu	36	3	41243766	41243766	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001098210	exon7	c.G1000A	p.E334K	.	.	.
C3orf75	54859	broad.mit.edu	36	3	47512669	47512669	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001031703	exon7	c.C695T	p.P232L	.	.	.
LAMB2	3913	broad.mit.edu	36	3	49137725	49137725	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002292	exon19	c.C2685G	p.G895G	.	.	.
IQCF3	401067	broad.mit.edu	36	3	51839580	51839580	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001085479	exon5	c.T188C	p.I63T	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77682687	77682687	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002942	exon8	c.A1088T	p.Q363L	.	.	.
FAT4	79633	broad.mit.edu	36	4	126620364	126620364	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024582	exon14	c.C12492T	p.G4164G	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134291925	134291925	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032961	exon1	c.C1180G	p.Q394E	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153466739	153466739	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018315	exon9	c.C1273T	p.R425C	 FBXW7,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
TLL1	7092	broad.mit.edu	36	4	167130058	167130058	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012464	exon2	c.C245T	p.T82M	.	.	.
ZCCHC4	29063	broad.mit.edu	36	4	24979818	24979818	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024936	exon13	c.G1476T	p.M492I	.	.	.
LRRC66	339977	broad.mit.edu	36	4	52555837	52555837	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001024611	exon4	c.G2108T	p.C703F	.	.	.
APC	324	broad.mit.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C2572T	p.R858X	 APC,large_intestine,NS,Substitution - Nonsense,0 	.	.
APC	324	broad.mit.edu	36	5	112203475	112203475	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.C4231T	p.Q1411X	 APC,large_intestine,NS,Substitution - Nonsense,0 	.	.
CTNND2	1501	broad.mit.edu	36	5	11417928	11417928	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001332	exon8	c.C1252A	p.H418N	.	.	.
PRR16	51334	broad.mit.edu	36	5	120049624	120049624	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016644	exon3	c.C167T	p.T56M	.	.	.
PCDHB8	56128	broad.mit.edu	36	5	140537808	140537808	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019120	exon1	c.C9T	p.A3A	.	.	.
PCDHGB3	56102	broad.mit.edu	36	5	140730656	140730656	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018924	exon1	c.T511A	p.Y171N	.	.	.
GRIA1	2890	broad.mit.edu	36	5	153154417	153154417	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000827	exon14	c.C2314A	p.L772I	.	.	.
CPEB4	80315	broad.mit.edu	36	5	173250397	173250397	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030627	exon1	c.G1055A	p.S352N	.	.	.
IL31RA	133396	broad.mit.edu	36	5	55248380	55248380	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139017	exon15	c.G1970C	p.R657T	.	.	.
CCNB1	891	broad.mit.edu	36	5	68502896	68502896	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031966	exon4	c.C407T	p.A136V	.	.	.
FASTKD3	79072	broad.mit.edu	36	5	7919944	7919945	+	Missense_Mutation	DNP	AG	GC	GC	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024091	exon2	c.1252_1253GC	.	.	.	.
HIST1H3D	8351	broad.mit.edu	36	6	26305214	26305214	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003530	exon2	c.G244C	p.D82H	.	.	.
HIST1H2BK	85236	broad.mit.edu	36	6	27222416	27222416	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080593	exon1	c.G141A	p.K47K	.	.	.
CCHCR1	54535	broad.mit.edu	36	6	31230324	31230324	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001105563	exon4	c.G621T	p.E207D	.	.	.
ITPR3	3710	broad.mit.edu	36	6	33756125	33756125	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002224	exon32	c.G4266C	p.V1422V	.	.	.
MAPK13	5603	broad.mit.edu	36	6	36212491	36212491	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002754	exon7	c.G576A	p.E192E	.	.	.
WIPF3	644150	broad.mit.edu	36	7	29894258	29894259	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080529	exon5	c.1149_1150insG	p.S383fs	.	.	.
TBXAS1	6916	broad.mit.edu	36	7	139308278	139308278	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001061	exon9	c.T914A	p.F305Y	.	.	.
RAPGEF5	9771	broad.mit.edu	36	7	22156613	22156613	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012294	exon18	c.C1362G	p.I454M	.	.	.
ANLN	54443	broad.mit.edu	36	7	36455916	36455916	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018685	exon23	c.G3196C	p.E1066Q	.	.	.
TRIM4	89122	broad.mit.edu	36	7	99344149	99344149	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033017	exon4	c.C790G	p.L264V	.	.	.
TFEC	22797	broad.mit.edu	36	7	115381893	115381893	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001018058	exon4	c.335delA	p.K112fs	.	.	.
SLC30A8	169026	broad.mit.edu	36	8	118228567	118228567	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173851	exon2	c.G265A	p.V89I	.	.	.
USP17L2	377630	broad.mit.edu	36	8	12032428	12032428	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201402	exon1	c.A1251C	p.A417A	.	.	.
ZNF572	137209	broad.mit.edu	36	8	126057867	126057867	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152412	exon3	c.G176C	p.R59T	.	.	.
TG	7038	broad.mit.edu	36	8	133949594	133949594	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003235	exon2	c.G120A	p.T40T	.	.	.
CLU	1191	broad.mit.edu	36	8	27518508	27518508	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001171138	exon5	c.C712T	p.R238C	.	.	.
IDO1	3620	broad.mit.edu	36	8	39904508	39904508	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002164	exon10	c.C859T	p.H287Y	.	.	.
TOX	9760	broad.mit.edu	36	8	59913302	59913302	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014729	exon5	c.T816C	p.F272F	.	.	.
CHD7	55636	broad.mit.edu	36	8	61905478	61905478	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017780	exon15	c.G3566A	p.R1189H	.	.	.
ANGPT2	285	broad.mit.edu	36	8	6358704	6358704	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001118888	exon6	c.C946T	p.R316C	.	.	.
FABP12	646486	broad.mit.edu	36	8	82599872	82599872	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105281	exon4	c.C387T	p.Y129Y	.	.	.
CNGB3	54714	broad.mit.edu	36	8	87657392	87657392	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019098	exon18	c.A2186T	p.E729V	.	.	.
C8orf37	157657	broad.mit.edu	36	8	96329130	96329130	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_177965	exon6	c.A515T	p.K172M	.	.	.
POP1	10940	broad.mit.edu	36	8	99209867	99209867	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001145860	exon4	c.C409T	p.R137W	.	.	.
CYLC2	1539	broad.mit.edu	36	9	104806875	104806875	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001340	exon4	c.G258T	p.E86D	.	.	.
ZFP37	7539	broad.mit.edu	36	9	114846284	114846284	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003408	exon4	c.T435C	p.T145T	.	.	.
OR5C1	392391	broad.mit.edu	36	9	124591690	124591691	+	Missense_Mutation	DNP	GT	CC	CC	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001923	exon1	c.658_659CC	.	.	.	.
BAT2L1	84726	broad.mit.edu	36	9	133343786	133343786	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013318	exon17	c.C4717T	p.L1573L	.	.	.
C9orf86	55684	broad.mit.edu	36	9	138837857	138837857	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001173989	exon2	c.C190A	p.Q64K	.	.	.
CA9	768	broad.mit.edu	36	9	35667795	35667795	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001216	exon6	c.G849A	p.P283P	.	.	.
ALDH1B1	219	broad.mit.edu	36	9	38385987	38385987	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000692	exon2	c.A242G	p.K81R	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89691989	89691989	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178828	exon4	c.C2767T	p.P923S	.	.	.
IL1RAPL2	26280	broad.mit.edu	36	X	104898189	104898189	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017416	exon11	c.C1940T	p.T647M	.	.	.
COL4A6	1288	broad.mit.edu	36	X	107309324	107309325	+	Splice_Site	DNP	CC	AA	AA	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033641	exon26	c.2132_2132TT	.	.	.	.
COL4A6	1288	broad.mit.edu	36	X	107349591	107349591	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033641	exon5	c.G317T	p.G106V	.	.	.
ZCCHC12	170261	broad.mit.edu	36	X	117844165	117844165	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173798	exon4	c.C930G	p.S310S	.	.	.
SLITRK2	84631	broad.mit.edu	36	X	144712693	144712693	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001144006	exon3	c.A1058C	p.N353T	.	.	.
PDHA1	5160	broad.mit.edu	36	X	19279407	19279407	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001173454	exon5	c.C493T	p.R165W	.	.	.
CXorf59	286464	broad.mit.edu	36	X	36013399	36013399	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173695	exon5	c.A464T	p.K155M	.	.	.
NLGN4X	57502	broad.mit.edu	36	X	5821432	5821432	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020742	exon6	c.G1877A	p.R626Q	.	.	.
MED12	9968	broad.mit.edu	36	X	70264969	70264969	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005120	exon23	c.C3308G	p.S1103C	.	.	.