Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
LRP10	26020	hgsc.bcm.edu	36	14	22414187	22414188	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_014045	exon4	c.299_300insT	p.A100fs	.	.	.
GLI4	2738	hgsc.bcm.edu	36	8	144423055	144423056	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138465	exon2	c.114_115insC	p.G38fs	.	.	.
ZSCAN22	342945	hgsc.bcm.edu	36	19	63538158	63538159	+	Frame_Shift_Ins	INS	-	-	CA	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_181846	exon2	c.178_179insCA	p.A60fs	.	.	.
FAM71A	149647	hgsc.bcm.edu	36	1	210865924	210865925	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_153606	exon1	c.1082_1083insA	p.S361fs	.	.	.
COL11A2	1302	hgsc.bcm.edu	36	6	33260058	33260059	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080680	exon8	c.961_962insG	p.P321fs	.	.	.
UNC13D	201294	hgsc.bcm.edu	36	17	71337752	71337753	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199242	exon30	c.2906_2907insC	p.Q969fs	.	.	.
PLCH1	23007	hgsc.bcm.edu	36	3	156682337	156682338	+	Frame_Shift_Ins	INS	-	-	GCAG	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_014996	exon22	c.4082_4083insCTGC	p.H1361fs	.	.	.
WFS1	7466	hgsc.bcm.edu	36	4	6347773	6347774	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145853	exon7	c.817_818insC	p.E273fs	.	.	.
PCDHA7	56141	hgsc.bcm.edu	36	5	140195148	140195149	+	Frame_Shift_Ins	INS	-	-	CC	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_018910	exon1	c.996_997insCC	p.G332fs	.	.	.
TSPAN33	340348	hgsc.bcm.edu	36	7	128593982	128593982	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178562	exon6	c.A587G	p.Q196R	.	.	.
NUP205	23165	hgsc.bcm.edu	36	7	134954943	134954943	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_015135	exon29	c.T4196G	p.I1399R	.	.	.
TRYX3	136541	hgsc.bcm.edu	36	7	141601540	141601540	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001001317	exon4	c.G248A	p.G83D	.	.	.
GIMAP7	168537	hgsc.bcm.edu	36	7	149848464	149848464	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153236	exon2	c.G469A	p.V157I	.	.	.
KLHL7	55975	hgsc.bcm.edu	36	7	23147060	23147060	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001031710	exon5	c.A590G	p.D197G	.	.	.
NUPL2	11097	hgsc.bcm.edu	36	7	23206481	23206481	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007342	exon7	c.T864G	p.F288L	.	.	.
SDK1	221935	hgsc.bcm.edu	36	7	4164639	4164639	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152744	exon31	c.G4659T	p.L1553L	.	.	.
PKD1L1	168507	hgsc.bcm.edu	36	7	47839295	47839295	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138295	exon41	c.C6255A	p.A2085A	.	.	.
CLIP2	7461	hgsc.bcm.edu	36	7	73428937	73428937	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003388	exon10	c.C2270T	p.S757L	.	.	.
GTF2IRD1	9569	hgsc.bcm.edu	36	7	73654677	73654677	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_005685	exon27	c.C2816A	p.P939Q	.	.	.
SEMA3D	223117	hgsc.bcm.edu	36	7	84509531	84509531	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_152754	exon8	c.G868A	p.V290I	.	.	.
ABCB1	5243	hgsc.bcm.edu	36	7	87028612	87028612	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_000927	exon9	c.C730T	p.L244F	.	.	.
CASD1	64921	hgsc.bcm.edu	36	7	94004819	94004819	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022900	exon9	c.C943T	p.L315L	.	.	.
AHCY	191	hgsc.bcm.edu	36	20	32346943	32346943	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000687	exon2	c.G138A	p.K46K	.	.	.
FAM83C	128876	hgsc.bcm.edu	36	20	33343207	33343207	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178468	exon1	c.C315G	p.L105L	.	.	.
SRC	6714	hgsc.bcm.edu	36	20	35455782	35455782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005417	exon6	c.G421A	p.A141T	.	.	.
SRC	6714	hgsc.bcm.edu	36	20	35455784	35455784	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005417	exon6	c.G423T	p.A141A	.	.	.
SMOX	54498	hgsc.bcm.edu	36	20	4116036	4116036	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175841	exon4	c.C555G	p.L185L	.	.	.
PTPN1	5770	hgsc.bcm.edu	36	20	48614963	48614963	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002827	exon3	c.G205A	p.A69T	.	.	.
PLCB4	5332	hgsc.bcm.edu	36	20	9319202	9319202	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000933	exon14	c.C1263T	p.S421S	.	.	.
CDC42BPB	9578	hgsc.bcm.edu	36	14	102480154	102480154	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_006035	exon30	c.A4235G	p.N1412S	.	.	.
CDC42BPB	9578	hgsc.bcm.edu	36	14	102511844	102511844	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_006035	exon11	c.C1437G	p.S479R	.	.	.
ARHGAP5	394	hgsc.bcm.edu	36	14	31631390	31631390	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001030055	exon2	c.C1764T	p.H588H	.	.	.
SSTR1	6751	hgsc.bcm.edu	36	14	37749376	37749376	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001049	exon3	c.A1031G	p.D344G	.	.	.
SLC8A3	6547	hgsc.bcm.edu	36	14	69704689	69704689	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033262	exon2	c.T204A	p.P68P	.	.	.
ISM2	145501	hgsc.bcm.edu	36	14	77020521	77020521	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182509	exon3	c.C525G	p.A175A	.	.	.
SEZ6L	23544	hgsc.bcm.edu	36	22	25077069	25077069	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001184775	exon12	c.C2459T	p.S820L	.	.	.
MYH9	4627	hgsc.bcm.edu	36	22	35052611	35052611	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_002473	exon5	c.T560C	p.V187A	.	.	.
MKL1	57591	hgsc.bcm.edu	36	22	39142994	39142994	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_020831	exon14	c.A2220C	p.E740D	.	.	.
C22orf9	23313	hgsc.bcm.edu	36	22	43972492	43972492	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015264	exon9	c.C1032T	p.A344A	.	.	.
TRMU	55687	hgsc.bcm.edu	36	22	45124870	45124870	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018006	exon5	c.C497G	p.A166G	.	.	.
ILF3	3609	hgsc.bcm.edu	36	19	10643186	10643186	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_012218	exon4	c.C386T	p.A129V	.	.	.
DHPS	1725	hgsc.bcm.edu	36	19	12651981	12651981	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001930	exon2	c.C366A	p.H122Q	.	.	.
GNA11	2767	hgsc.bcm.edu	36	19	3072039	3072039	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002067	exon7	c.G942C	p.V314V	.	.	.
GNA15	2769	hgsc.bcm.edu	36	19	3099635	3099635	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_002068	exon2	c.C192G	p.I64M	.	.	.
ZNF536	9745	hgsc.bcm.edu	36	19	35627999	35627999	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014717	exon2	c.C1690T	p.R564W	.	.	.
ZNF649	65251	hgsc.bcm.edu	36	19	57086529	57086529	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023074	exon5	c.C672T	p.H224H	.	.	.
ZNF613	79898	hgsc.bcm.edu	36	19	57139668	57139668	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024840	exon6	c.C612T	p.A204A	.	.	.
GTF2F1	2962	hgsc.bcm.edu	36	19	6334405	6334405	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_002096	exon6	c.G599T	p.R200M	.	.	.
TNFRSF11B	4982	hgsc.bcm.edu	36	8	120006175	120006175	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002546	exon5	c.C825T	p.D275D	.	.	.
TRMT12	55039	hgsc.bcm.edu	36	8	125532789	125532789	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017956	exon1	c.G440A	p.C147Y	.	.	.
MOS	4342	hgsc.bcm.edu	36	8	57188704	57188704	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_005372	exon1	c.C392G	p.S131C	.	.	.
MTOR	2475	hgsc.bcm.edu	36	1	11107160	11107160	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004958	exon47	c.C6644A	p.S2215Y	FRAP1,large_intestine,NS,Substitution - Missense,0	.	.
PRDM2	7799	hgsc.bcm.edu	36	1	13981118	13981118	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001007257	exon3	c.C3638A	p.S1213X	.	.	.
RXFP4	339403	hgsc.bcm.edu	36	1	154179033	154179033	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181885	exon1	c.C909T	p.C303C	.	.	.
NTRK1	4914	hgsc.bcm.edu	36	1	155116504	155116504	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001012331	exon15	c.C2118A	p.S706R	.	.	.
ETV3L	440695	hgsc.bcm.edu	36	1	155329156	155329156	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001004341	exon5	c.C995T	p.P332L	.	.	.
NECAP2	55707	hgsc.bcm.edu	36	1	16651080	16651080	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018090	exon6	c.C650T	p.A217V	.	.	.
IRF6	3664	hgsc.bcm.edu	36	1	208030827	208030827	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006147	exon7	c.C696T	p.Y232Y	.	.	.
FAM71A	149647	hgsc.bcm.edu	36	1	210865925	210865925	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153606	exon1	c.C1083A	p.S361R	.	.	.
CAPN2	824	hgsc.bcm.edu	36	1	222006374	222006374	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001748	exon8	c.C952T	p.R318W	.	.	.
URB2	9816	hgsc.bcm.edu	36	1	227838060	227838060	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014777	exon4	c.T1077C	p.V359V	.	.	.
ACTN2	88	hgsc.bcm.edu	36	1	234965631	234965631	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001103	exon8	c.G771A	p.A257A	.	.	.
RGS7	6000	hgsc.bcm.edu	36	1	239041914	239041914	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002924	exon14	c.G1009C	p.A337P	.	.	.
C1orf130	400746	hgsc.bcm.edu	36	1	24804700	24804700	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010980	exon4	c.C184T	p.R62W	.	.	.
MAP3K6	9064	hgsc.bcm.edu	36	1	27554763	27554763	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004672	exon28	c.A3772T	p.I1258F	.	.	.
EYA3	2140	hgsc.bcm.edu	36	1	28199100	28199100	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001990	exon12	c.T1041C	p.I347I	.	.	.
KIAA0319L	79932	hgsc.bcm.edu	36	1	35688547	35688547	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_024874	exon14	c.G2213A	p.G738E	.	.	.
C1orf50	79078	hgsc.bcm.edu	36	1	43011864	43011864	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024097	exon3	c.T239C	p.V80A	.	.	.
FPGT	8790	hgsc.bcm.edu	36	1	74443699	74443699	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001199328	exon5	c.G618A	p.M206I	.	.	.
FAM73A	374986	hgsc.bcm.edu	36	1	78111297	78111297	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198549	exon15	c.C1584G	p.A528A	.	.	.
SLC2A5	6518	hgsc.bcm.edu	36	1	9021145	9021145	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003039	exon10	c.T1106A	p.V369E	.	.	.
SEMA4A	64218	hgsc.bcm.edu	36	1	154392913	154392914	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	CT	CT	CT	-	CT	CT	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022367	exon3	c.224_225del	p.75_75del	.	.	.
ODF3	113746	hgsc.bcm.edu	36	11	190028	190028	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_053280	exon7	c.G760C	p.E254Q	.	.	.
AGBL2	79841	hgsc.bcm.edu	36	11	47668300	47668300	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024783	exon9	c.G1535A	p.R512Q	.	.	.
FAM111B	374393	hgsc.bcm.edu	36	11	58649938	58649938	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001142703	exon3	c.C1702T	p.R568X	.	.	.
PC	5091	hgsc.bcm.edu	36	11	66394917	66394917	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040716	exon8	c.G656A	p.R219Q	.	.	.
TPCN2	219931	hgsc.bcm.edu	36	11	68602832	68602832	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139075	exon15	c.C1405G	p.L469V	.	.	.
WNT11	7481	hgsc.bcm.edu	36	11	75580333	75580333	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_004626	exon4	c.G813A	p.S271S	.	.	.
MICAL1	64780	hgsc.bcm.edu	36	6	109878399	109878399	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022765	exon8	c.C988T	p.L330L	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152599702	152599702	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015293	exon24	c.C3714T	p.S1238S	.	.	.
MAP3K4	4216	hgsc.bcm.edu	36	6	161443778	161443778	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006724	exon18	c.G3683A	p.R1228Q	.	.	.
PDE10A	10846	hgsc.bcm.edu	36	6	165729895	165729895	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006661	exon15	c.C1292T	p.T431M	.	.	.
GABBR1	2550	hgsc.bcm.edu	36	6	29707342	29707342	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021904	exon3	c.A99T	p.I33I	.	.	.
ABCF1	23	hgsc.bcm.edu	36	6	30661049	30661049	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001025091	exon15	c.G1425A	p.L475L	.	.	.
COL11A2	1302	hgsc.bcm.edu	36	6	33260061	33260061	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_080680	exon8	c.G958T	p.V320F	.	.	.
ITPR3	3710	hgsc.bcm.edu	36	6	33747838	33747838	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_002224	exon22	c.T2783A	p.V928E	.	.	.
SFRS3	6428	hgsc.bcm.edu	36	6	36672576	36672576	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003017	exon2	c.A59G	p.N20S	.	.	.
LRFN2	57497	hgsc.bcm.edu	36	6	40508534	40508534	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020737	exon2	c.C297T	p.L99L	.	.	.
GNMT	27232	hgsc.bcm.edu	36	6	43038866	43038866	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018960	exon4	c.A530C	p.H177P	.	.	.
MCM3	4172	hgsc.bcm.edu	36	6	52252166	52252166	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_002388	exon5	c.A722T	p.Y241F	.	.	.
MICAL1	64780	hgsc.bcm.edu	36	6	109876712	109876716	+	Frame_Shift_Del	DEL	CCCGG	CCCGG	-	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	CCCGG	CCCGG	CCCGG	CCCGG	CCCGG	CCCGG	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001159291	exon11	c.1318_1322del	p.440_441del	.	.	.
LGALS9B	284194	hgsc.bcm.edu	36	17	20300544	20300544	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042685	exon4	c.C366T	p.Y122Y	.	.	.
KCNJ12	3768	hgsc.bcm.edu	36	17	21259962	21259962	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_021012	exon3	c.G715A	p.E239K	.	.	.
FBXL20	84961	hgsc.bcm.edu	36	17	34674010	34674010	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032875	exon14	c.C1147T	p.R383W	.	.	.
GSG2	83903	hgsc.bcm.edu	36	17	3575633	3575633	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_031965	exon1	c.G1655T	p.R552L	.	.	.
CDC27	996	hgsc.bcm.edu	36	17	42571161	42571161	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001114091	exon13	c.T1665G	p.D555E	CDC27,lung,NS,Substitution - Missense,0	.	.
EPX	8288	hgsc.bcm.edu	36	17	53636758	53636758	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_000502	exon12	c.A2123G	p.N708S	.	.	.
RNF43	54894	hgsc.bcm.edu	36	17	53790551	53790551	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017763	exon9	c.C1585T	p.R529W	.	.	.
MRC2	9902	hgsc.bcm.edu	36	17	58098524	58098524	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006039	exon6	c.C1015T	p.R339C	.	.	.
STRADA	92335	hgsc.bcm.edu	36	17	59135118	59135118	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001165969	exon10	c.G944T	p.X315L	.	.	.
PITPNM3	83394	hgsc.bcm.edu	36	17	6321210	6321210	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031220	exon9	c.G948T	p.K316N	.	.	.
KIAA0195	9772	hgsc.bcm.edu	36	17	70999038	70999038	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014738	exon13	c.T1293C	p.T431T	.	.	.
SLC2A4	6517	hgsc.bcm.edu	36	17	7129783	7129783	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042	exon10	c.G1158C	p.V386V	.	.	.
GRIK1	2897	hgsc.bcm.edu	36	21	29967277	29967277	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_175611	exon4	c.G623A	p.G208E	.	.	.
PCP4	5121	hgsc.bcm.edu	36	21	40222834	40222834	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006198	exon3	c.A117G	p.T39T	.	.	.
ERN2	10595	hgsc.bcm.edu	36	16	23614102	23614102	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_033266	exon15	c.G1864C	p.V622L	.	.	.
ZNF200	7752	hgsc.bcm.edu	36	16	3222859	3222859	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003454	exon3	c.C314A	p.S105Y	.	.	.
SNRNP25	79622	hgsc.bcm.edu	36	16	45489	45489	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024571	exon2	c.G100T	p.A34S	.	.	.
UBN1	29855	hgsc.bcm.edu	36	16	4864505	4864505	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016936	exon14	c.C2093T	p.P698L	.	.	.
HYDIN	54768	hgsc.bcm.edu	36	16	69619232	69619232	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032821	exon20	c.G2816A	p.R939Q	.	.	.
MAF	4094	hgsc.bcm.edu	36	16	78190238	78190238	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001031804	exon1	c.G1063A	p.G355S	.	.	.
WFDC1	58189	hgsc.bcm.edu	36	16	82886147	82886147	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021197	exon1	c.A69C	p.L23L	.	.	.
CA5A	763	hgsc.bcm.edu	36	16	86493578	86493578	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001739	exon4	c.C509A	p.A170D	.	.	.
DYM	54808	hgsc.bcm.edu	36	18	44824464	44824464	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017653	exon17	c.A1969C	p.N657H	.	.	.
SMAD4	4089	hgsc.bcm.edu	36	18	46845917	46845917	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005359	exon9	c.G1082A	p.R361H	SMAD4,small_intestine,duodenum,Substitution - Missense,+1	.	.
HCLS1	3059	hgsc.bcm.edu	36	3	122858865	122858865	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005335	exon3	c.C109T	p.R37X	.	.	.
MME	4311	hgsc.bcm.edu	36	3	156367424	156367424	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000902	exon18	c.C1700T	p.A567V	.	.	.
SCN10A	6336	hgsc.bcm.edu	36	3	38730509	38730509	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006514	exon21	c.C3748T	p.R1250X	.	.	.
TRAK1	22906	hgsc.bcm.edu	36	3	42201222	42201222	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042646	exon4	c.G405A	p.S135S	.	.	.
ATRIP	84126	hgsc.bcm.edu	36	3	48476645	48476645	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130384	exon8	c.T1188G	p.R396R	.	.	.
ATRIP	84126	hgsc.bcm.edu	36	3	48477041	48477041	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130384	exon8	c.G1584A	p.G528G	.	.	.
RBM15B	29890	hgsc.bcm.edu	36	3	51405043	51405043	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013286	exon1	c.T1173G	p.H391Q	.	.	.
CACNA1D	776	hgsc.bcm.edu	36	3	53779062	53779062	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128840	exon31	c.C3893A	p.P1298H	.	.	.
ATRIP	84126	hgsc.bcm.edu	36	3	48477045	48477046	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	GC	GC	GC	GC	GC	GC	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_130384	exon8	c.1588_1589del	p.530_530del	.	.	.
STAB2	55576	hgsc.bcm.edu	36	12	102556038	102556038	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017564	exon8	c.G824C	p.C275S	.	.	.
POLR3B	55703	hgsc.bcm.edu	36	12	105419320	105419320	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018082	exon26	c.G3074A	p.R1025Q	.	.	.
FICD	11153	hgsc.bcm.edu	36	12	107436424	107436424	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_007076	exon3	c.T419A	p.V140E	.	.	.
KIAA0528	9847	hgsc.bcm.edu	36	12	22568733	22568733	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014802	exon6	c.C541A	p.R181R	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
H1FNT	341567	hgsc.bcm.edu	36	12	47009866	47009866	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181788	exon1	c.C525T	p.N175N	.	.	.
ADCY6	112	hgsc.bcm.edu	36	12	47462906	47462906	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015270	exon1	c.G579C	p.G193G	.	.	.
KRT7	3855	hgsc.bcm.edu	36	12	50923118	50923118	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005556	exon6	c.G914A	p.R305Q	.	.	.
NCKAP1L	3071	hgsc.bcm.edu	36	12	53188530	53188530	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001184976	exon5	c.C304T	p.R102W	.	.	.
PLEKHG6	55200	hgsc.bcm.edu	36	12	6298257	6298257	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144857	exon11	c.C1265A	p.P422H	.	.	.
NCAPD2	9918	hgsc.bcm.edu	36	12	6494244	6494244	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014865	exon9	c.C884G	p.S295X	.	.	.
ING4	51147	hgsc.bcm.edu	36	12	6632378	6632378	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127586	exon4	c.A376T	p.S126C	.	.	.
ATP10A	57194	hgsc.bcm.edu	36	15	23577294	23577294	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024490	exon2	c.A619T	p.K207X	.	.	.
C15orf57	90416	hgsc.bcm.edu	36	15	38633475	38633475	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080792	exon4	c.C545T	p.A182V	.	.	.
SLC24A5	283652	hgsc.bcm.edu	36	15	46216264	46216264	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_205850	exon6	c.G683A	p.C228Y	.	.	.
LARP6	55323	hgsc.bcm.edu	36	15	68912246	68912246	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018357	exon3	c.A675T	p.G225G	.	.	.
KIAA1024	23251	hgsc.bcm.edu	36	15	77536797	77536797	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_015206	exon2	c.A1253T	p.K418M	.	.	.
MRPL46	26589	hgsc.bcm.edu	36	15	86804038	86804038	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_022163	exon4	c.T650G	p.F217C	.	.	.
SPATA8	145946	hgsc.bcm.edu	36	15	95128429	95128429	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173499	exon2	c.C132T	p.C44C	.	.	.
TCF12	6938	hgsc.bcm.edu	36	15	55313578	55313588	+	Frame_Shift_Del	DEL	TTGGAAAGGCT	TTGGAAAGGCT	-	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	TTGGAAAGGCT	TTGGAAAGGCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207037	exon12	c.1016_1026del	p.339_342del	.	.	.
PIF1	80119	hgsc.bcm.edu	36	15	62898438	62898439	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025049	exon9	c.1370_1371del	p.457_457del	.	.	.
NEO1	4756	hgsc.bcm.edu	36	15	71349823	71349824	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172623	exon18	c.2832_2833del	p.944_945del	.	.	.
UCP1	7350	hgsc.bcm.edu	36	4	141703968	141703968	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021833	exon3	c.G480A	p.A160A	.	.	.
ANAPC4	29945	hgsc.bcm.edu	36	4	24988192	24988192	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013367	exon2	c.A45C	p.G15G	.	.	.
ANAPC4	29945	hgsc.bcm.edu	36	4	24988197	24988197	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_013367	exon2	c.A50T	p.K17M	.	.	.
ZAR1	326340	hgsc.bcm.edu	36	4	48190969	48190969	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175619	exon4	c.G1226T	p.G409V	.	.	.
PDE6B	5158	hgsc.bcm.edu	36	4	651714	651714	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145292	exon19	c.A1585C	p.K529Q	.	.	.
PDGFRA	5156	hgsc.bcm.edu	36	4	54835791	54835791	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006206	exon12	c.G1680A	p.R560R	.	.	.
MORF4L2	9643	hgsc.bcm.edu	36	X	102817998	102817998	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142429	exon5	c.C614T	p.P205L	.	.	.
COL4A6	1288	hgsc.bcm.edu	36	X	107294879	107294879	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033641	exon39	c.C3854T	p.S1285L	.	.	.
CT47A6	728062	hgsc.bcm.edu	36	X	119922086	119922086	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080146	exon1	c.G678T	p.E226D	.	.	.
SMARCA1	6594	hgsc.bcm.edu	36	X	128427606	128427606	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003069	exon22	c.C2713T	p.R905C	.	.	.
ABCD1	215	hgsc.bcm.edu	36	X	152655822	152655822	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000033	exon5	c.G1411A	p.E471K	.	.	.
WDR42B	139425	hgsc.bcm.edu	36	X	27908046	27908046	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001017930	exon1	c.G1327C	p.V443L	.	.	.
MAGEB2	4113	hgsc.bcm.edu	36	X	30147126	30147126	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_002364	exon2	c.A508G	p.K170E	.	.	.
ARSF	416	hgsc.bcm.edu	36	X	3038172	3038172	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004042	exon10	c.C1269G	p.V423V	.	.	.
NHSL2	340527	hgsc.bcm.edu	36	X	71275569	71275569	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001013627	exon6	c.G1446A	p.S482S	.	.	.
KLHL4	56062	hgsc.bcm.edu	36	X	86773982	86773982	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_057162	exon7	c.G1441A	p.V481M	.	.	.
NPAS2	4862	hgsc.bcm.edu	36	2	100915889	100915889	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002518	exon4	c.G267A	p.M89I	.	.	.
EVX2	344191	hgsc.bcm.edu	36	2	176655182	176655182	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080458	exon2	c.G669T	p.A223A	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179349710	179349710	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_133379	exon28	c.T5126A	p.L1709H	.	.	.
ZNF804A	91752	hgsc.bcm.edu	36	2	185509034	185509034	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_194250	exon4	c.G666A	p.A222A	.	.	.
ZSWIM2	151112	hgsc.bcm.edu	36	2	187422070	187422070	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182521	exon1	c.G33A	p.R11R	.	.	.
TMEM198	130612	hgsc.bcm.edu	36	2	220122154	220122154	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001005209	exon4	c.T779A	p.M260K	.	.	.
SPHKAP	80309	hgsc.bcm.edu	36	2	228591662	228591662	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001142644	exon7	c.T2152G	p.C718G	.	.	.
SPHKAP	80309	hgsc.bcm.edu	36	2	228591664	228591664	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001142644	exon7	c.T2150G	p.I717R	.	.	.
NMUR1	10316	hgsc.bcm.edu	36	2	232098188	232098188	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006056	exon3	c.G1091A	p.R364Q	.	.	.
SH3BP4	23677	hgsc.bcm.edu	36	2	235608446	235608446	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014521	exon3	c.G61C	p.G21R	.	.	.
COL6A3	1293	hgsc.bcm.edu	36	2	237950591	237950591	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_057166	exon4	c.C812A	p.A271D	.	.	.
CEP68	23177	hgsc.bcm.edu	36	2	65158550	65158550	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015147	exon5	c.T2052C	p.S684S	.	.	.
MPHOSPH10	10199	hgsc.bcm.edu	36	2	71225159	71225159	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005791	exon8	c.C1540T	p.H514Y	.	.	.
PRSS3	5646	hgsc.bcm.edu	36	9	33789155	33789155	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002771	exon5	c.G721T	p.D241Y	.	.	.
PSAT1	29968	hgsc.bcm.edu	36	9	80106749	80106749	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_058179	exon3	c.C181T	p.R61W	.	.	.
COL4A1	1282	hgsc.bcm.edu	36	13	109643253	109643253	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001845	exon23	c.G1390A	p.G464R	.	.	.
POSTN	10631	hgsc.bcm.edu	36	13	37052781	37052781	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135934	exon11	c.C1446T	p.N482N	.	.	.
FREM2	341640	hgsc.bcm.edu	36	13	38161451	38161451	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_207361	exon1	c.A1970G	p.H657R	.	.	.
FREM2	341640	hgsc.bcm.edu	36	13	38164575	38164575	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207361	exon1	c.T5094C	p.F1698F	.	.	.
KIAA1704	55425	hgsc.bcm.edu	36	13	44500034	44500034	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018559	exon8	c.C919T	p.L307F	.	.	.
TCF7L2	6934	hgsc.bcm.edu	36	10	114901535	114901535	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001146284	exon9	c.A982G	p.N328D	.	.	.
CUBN	8029	hgsc.bcm.edu	36	10	17000780	17000780	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001081	exon45	c.C6847T	p.R2283W	.	.	.
VIM	7431	hgsc.bcm.edu	36	10	17312660	17312660	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003380	exon3	c.A569T	p.Q190L	.	.	.
PRKG1	5592	hgsc.bcm.edu	36	10	53492309	53492309	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006258	exon7	c.G847A	p.V283I	.	.	.
C10orf104	119504	hgsc.bcm.edu	36	10	73662779	73662779	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173473	exon4	c.C232T	p.R78W	.	.	.
KIF11	3832	hgsc.bcm.edu	36	10	94358912	94358912	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004523	exon5	c.A543G	p.R181R	.	.	.
NOC3L	64318	hgsc.bcm.edu	36	10	96102665	96102665	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022451	exon7	c.C836T	p.T279I	.	.	.
BEND7	222389	hgsc.bcm.edu	36	10	13521180	13521181	+	Frame_Shift_Del	DEL	AG	AG	-	rs10590401	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152751	exon9	c.1404_1405del	p.468_469del	.	.	.
APC	324	hgsc.bcm.edu	36	5	112203289	112203289	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.C4045T	p.Q1349X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.
ANKHD1-EIF4EBP3	404734	hgsc.bcm.edu	36	5	139856883	139856883	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_017747	exon15	c.A2840C	p.N947T	.	.	.
PCDHA7	56141	hgsc.bcm.edu	36	5	140195354	140195354	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_018910	exon1	c.T1202G	p.F401C	.	.	.
PCDHGC5	56097	hgsc.bcm.edu	36	5	140851139	140851139	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018929	exon1	c.C2148A	p.C716X	.	.	.
DOCK2	1794	hgsc.bcm.edu	36	5	169439813	169439813	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004946	exon50	c.G5235A	p.A1745A	.	.	.