Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target BRAF 673 hgsc.bcm.edu 36 7 140099605 140099605 + Missense_Mutation SNP A A T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID NM_004333 exon15 c.T1799A p.V600E BRAF,pituitary,NS,Substitution - Missense,0 . . CRHR2 1395 hgsc.bcm.edu 36 7 30659672 30659672 + Silent SNP G G T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001883 exon12 c.C1165A p.R389R . . . TXNDC3 51314 hgsc.bcm.edu 36 7 37883008 37883008 + Nonsense_Mutation SNP G G T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_016616 exon12 c.G868T p.E290X . . . GCK 2645 hgsc.bcm.edu 36 7 44158419 44158419 + Silent SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_000162 exon3 c.C339T p.D113D . . . DAGLB 221955 hgsc.bcm.edu 36 7 6436645 6436645 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_139179 exon6 c.G920A p.G307D . . . BAZ1B 9031 hgsc.bcm.edu 36 7 72530491 72530491 + Silent SNP C C G novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_032408 exon7 c.G1236C p.L412L . . . SLC12A9 56996 hgsc.bcm.edu 36 7 100297035 100297035 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_020246 exon11 c.G1429A p.A477T . . . RNASE11 122651 hgsc.bcm.edu 36 14 20122110 20122110 + Missense_Mutation SNP G G T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_145250 exon3 c.C364A p.R122S . . . LTBP2 4053 hgsc.bcm.edu 36 14 74089487 74089487 + Silent SNP G G T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_000428 exon5 c.C1053A p.I351I . . . TSPAN16 26526 hgsc.bcm.edu 36 19 11278341 11278341 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_012466 exon5 c.C512T p.T171M . . . SLC35E1 79939 hgsc.bcm.edu 36 19 16538411 16538411 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_024881 exon4 c.G688A p.A230T . . . CYP2S1 29785 hgsc.bcm.edu 36 19 46392409 46392409 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_030622 exon2 c.G298A p.G100S . . . CCDC97 90324 hgsc.bcm.edu 36 19 46518198 46518198 + Silent SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_052848 exon4 c.C894T p.D298D . . . PTPRH 5794 hgsc.bcm.edu 36 19 60399926 60399926 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_002842 exon10 c.C2033T p.A678V . . . ZNF582 147948 hgsc.bcm.edu 36 19 61588091 61588091 + Missense_Mutation SNP T T G novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_144690 exon5 c.A507C p.K169N . . . TUSC3 7991 hgsc.bcm.edu 36 8 15552618 15552618 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_178234 exon3 c.G350A p.R117H . . . POLB 5423 hgsc.bcm.edu 36 8 42345965 42345965 + Missense_Mutation SNP G G T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_002690 exon12 c.G728T p.S243I . . . CNGB3 54714 hgsc.bcm.edu 36 8 87752427 87752427 + Silent SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_019098 exon4 c.G354A p.P118P . . . SETDB1 9869 hgsc.bcm.edu 36 1 149189730 149189730 + Nonsense_Mutation SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001145415 exon13 c.C1753T p.R585X . . . LELP1 149018 hgsc.bcm.edu 36 1 151443939 151443939 + Silent SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001010857 exon2 c.C132T p.F44F . . . ATF6 22926 hgsc.bcm.edu 36 1 160056206 160056206 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_007348 exon8 c.C1069T p.R357W . . . TAS1R2 80834 hgsc.bcm.edu 36 1 19053743 19053743 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_152232 exon3 c.C808T p.R270C . . . IPO13 9670 hgsc.bcm.edu 36 1 44194690 44194690 + Silent SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_014652 exon3 c.C933T p.I311I . . . LRP8 7804 hgsc.bcm.edu 36 1 53502536 53502536 + Silent SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_017522 exon9 c.G1161A p.S387S . . . C11orf63 79864 hgsc.bcm.edu 36 11 122261893 122261893 + Silent SNP C C A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_024806 exon2 c.C126A p.S42S . . . LRRC4C 57689 hgsc.bcm.edu 36 11 40094112 40094112 + Nonsense_Mutation SNP C C A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_020929 exon2 c.G307T p.E103X . . . SLC43A3 29015 hgsc.bcm.edu 36 11 56933317 56933317 + Missense_Mutation SNP A A C novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454 SOLID NM_199329 exon13 c.T1278G p.F426L . . . GCNT2 2651 hgsc.bcm.edu 36 6 10638019 10638019 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_145649 exon3 c.G889A p.D297N . . . MYLK4 340156 hgsc.bcm.edu 36 6 2624590 2624590 + Silent SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001012418 exon9 c.C810T p.L270L . . . LRFN2 57497 hgsc.bcm.edu 36 6 40507561 40507561 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_020737 exon2 c.C1270T p.R424W . . . VAT1 10493 hgsc.bcm.edu 36 17 38423393 38423393 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_006373 exon4 c.G847A p.V283I . . . NLRP1 22861 hgsc.bcm.edu 36 17 5383520 5383520 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_033007 exon7 c.G2809A p.V937I . . . TP53 7157 hgsc.bcm.edu 36 17 7518988 7518988 + Nonsense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001126114 exon6 c.C586T p.R196X TP53,central_nervous_system,brain,Substitution - Missense,-2 . . RPTOR 57521 hgsc.bcm.edu 36 17 76134150 76134150 + Silent SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_020761 exon1 c.C126T p.S42S . . . UBASH3A 53347 hgsc.bcm.edu 36 21 42735660 42735660 + Nonsense_Mutation SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001001895 exon11 c.C1402T p.R468X . . . MCM3AP 8888 hgsc.bcm.edu 36 21 46517164 46517164 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_003906 exon8 c.C2204T p.T735M . . . NKD1 85407 hgsc.bcm.edu 36 16 49222316 49222316 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_033119 exon8 c.C689T p.P230L . . . CTCF 10664 hgsc.bcm.edu 36 16 66202280 66202280 + Missense_Mutation SNP C C G novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_006565 exon3 c.C44G p.T15S . . . SETD1A 9739 hgsc.bcm.edu 36 16 30899358 30899358 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_014712 exon15 c.G4460A p.R1487Q . . . SLC38A7 55238 hgsc.bcm.edu 36 16 57271354 57271354 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_018231 exon3 c.G178A p.V60I . . . RRAD 6236 hgsc.bcm.edu 36 16 65515115 65515115 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_004165 exon4 c.C454T p.R152C . . . DCC 1630 hgsc.bcm.edu 36 18 48121229 48121229 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_005215 exon1 c.C74T p.A25V . . . L3MBTL4 91133 hgsc.bcm.edu 36 18 6291951 6291951 + Missense_Mutation SNP T T A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454 SOLID NM_173464 exon4 c.A78T p.Q26H . . . ATP9B 374868 hgsc.bcm.edu 36 18 75054199 75054199 + Missense_Mutation SNP A A G novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID NM_198531 exon9 c.A902G p.Y301C . . . ECT2 1894 hgsc.bcm.edu 36 3 174003397 174003397 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_018098 exon18 c.C1946T p.S649F . . . FETUB 26998 hgsc.bcm.edu 36 3 187853055 187853055 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_014375 exon7 c.C1090T p.R364C . . . CCR4 1233 hgsc.bcm.edu 36 3 32970419 32970419 + Silent SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_005508 exon2 c.C501T p.F167F . . . ATP2A2 488 hgsc.bcm.edu 36 12 109263143 109263143 + Silent SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_170665 exon14 c.C2058T p.I686I . . . P11 8909 hgsc.bcm.edu 36 12 46391781 46391781 + Silent SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001172439 exon9 c.C1017T p.D339D . . . CD27 939 hgsc.bcm.edu 36 12 6429607 6429607 + Silent SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001242 exon3 c.C276T p.L92L . . . USP5 8078 hgsc.bcm.edu 36 12 6831632 6831632 + Silent SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_003481 exon1 c.C28T p.L10L . . . CRADD 8738 hgsc.bcm.edu 36 12 92767984 92767984 + Silent SNP C C T rs56944668 unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_003805 exon3 c.C406T p.L136L . . . PLA2G4F 255189 hgsc.bcm.edu 36 15 40221633 40221633 + Missense_Mutation SNP G G T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_213600 exon20 c.C2391A p.D797E . . . NEIL1 79661 hgsc.bcm.edu 36 15 73431546 73431546 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_024608 exon3 c.G476A p.R159Q . . . SPRY1 10252 hgsc.bcm.edu 36 4 124542873 124542873 + Missense_Mutation SNP A A G novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454 SOLID NM_005841 exon2 c.A677G p.K226R . . . GALNT7 51809 hgsc.bcm.edu 36 4 174456018 174456018 + Silent SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_017423 exon6 c.G1143A p.P381P . . . KLB 152831 hgsc.bcm.edu 36 4 39112498 39112498 + Missense_Mutation SNP G G T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_175737 exon2 c.G1099T p.A367S . . . WDR21B 285429 hgsc.bcm.edu 36 4 41678849 41678849 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001029955 exon1 c.G283A p.E95K . . . MAPK10 5602 hgsc.bcm.edu 36 4 87208067 87208067 + Missense_Mutation SNP A A T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454 SOLID NM_138981 exon5 c.T433A p.L145M . . . RP13-102H20.1 158763 hgsc.bcm.edu 36 X 130045451 130045451 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_144967 exon4 c.C382T p.R128C . . . hCG_17324 200373 hgsc.bcm.edu 36 2 120099724 120099724 + Silent SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001029996 exon16 c.G648A p.S216S . . . LTBP1 4052 hgsc.bcm.edu 36 2 33099578 33099578 + Missense_Mutation SNP G G T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_206943 exon3 c.G664T p.A222S . . . CNRIP1 25927 hgsc.bcm.edu 36 2 68397819 68397819 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_015463 exon2 c.C304T p.R102W . . . GKN1 56287 hgsc.bcm.edu 36 2 69060629 69060629 + Missense_Mutation SNP C C A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_019617 exon5 c.C438A p.S146R . . . DYSF 8291 hgsc.bcm.edu 36 2 71739591 71739591 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001130982 exon44 c.G4810A p.A1604T . . . POMT1 10585 hgsc.bcm.edu 36 9 133375240 133375240 + Silent SNP C C G novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_007171 exon8 c.C735G p.A245A . . . PDCD1LG2 80380 hgsc.bcm.edu 36 9 5524898 5524898 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_025239 exon3 c.G209A p.R70H . . . SLITRK1 114798 hgsc.bcm.edu 36 13 83353254 83353254 + Silent SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_052910 exon1 c.C390T p.D130D . . . C10orf90 118611 hgsc.bcm.edu 36 10 128108356 128108356 + Nonsense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001004298 exon7 c.C1951T p.R651X . . . APC 324 hgsc.bcm.edu 36 5 112192515 112192515 + Nonsense_Mutation SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_001127511 exon12 c.C1636T p.R546X APC,large_intestine,NS,Substitution - Nonsense,0 . . APC 324 hgsc.bcm.edu 36 5 112203538 112203538 + Nonsense_Mutation SNP C C T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001127511 exon14 c.C4294T p.R1432X APC,large_intestine,rectum,Substitution - Nonsense,0 . . GRAMD3 65983 hgsc.bcm.edu 36 5 125848012 125848012 + Silent SNP C C A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454 SOLID NM_023927 exon10 c.C867A p.S289S . . . CHSY3 337876 hgsc.bcm.edu 36 5 129548681 129548681 + Missense_Mutation SNP G G T novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_175856 exon3 c.G1947T p.K649N . . . DNAH5 1767 hgsc.bcm.edu 36 5 13954432 13954432 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001369 exon14 c.C1981T p.R661C . . . DOCK2 1794 hgsc.bcm.edu 36 5 169394036 169394036 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_004946 exon35 c.G3523A p.V1175M . . . CDH12 1010 hgsc.bcm.edu 36 5 22114383 22114383 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_004061 exon5 c.C160T p.R54C . . . SLC45A2 51151 hgsc.bcm.edu 36 5 33983185 33983185 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_001012509 exon6 c.C1208T p.T403M . . . NAIP 4671 hgsc.bcm.edu 36 5 70344170 70344170 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454 SOLID NM_004536 exon4 c.C329T p.T110M . . . RASGRF2 5924 hgsc.bcm.edu 36 5 80445173 80445173 + Silent SNP C C A novel unknown TCGA-AA-A00D-01A-01W-A005-10 TCGA-AA-A00D-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID NM_006909 exon15 c.C2148A p.G716G . . .