Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target HPSE2 60495 broad.mit.edu 36 10 100985376 100985376 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166246 exon1 c.G174T p.K58N . . . GOT1 2805 broad.mit.edu 36 10 101153346 101153346 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002079 exon7 c.G829T p.E277X . . . SLC25A28 81894 broad.mit.edu 36 10 101363628 101363628 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031212 exon2 c.G335A p.R112H . . . ENTPD7 57089 broad.mit.edu 36 10 101454272 101454272 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020354 exon13 c.C1657A p.L553I . . . CUTC 51076 broad.mit.edu 36 10 101492972 101492972 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015960 exon4 c.T266A p.F89Y . . . ABCC2 1244 broad.mit.edu 36 10 101553989 101553989 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000392 exon10 c.C1433T p.A478V . . . ABCC2 1244 broad.mit.edu 36 10 101559947 101559947 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000392 exon14 c.C1882T p.R628X . . . ABCC2 1244 broad.mit.edu 36 10 101581443 101581443 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000392 exon22 c.C2969A p.S990Y . . . CWF19L1 55280 broad.mit.edu 36 10 102006144 102006144 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018294 exon5 c.A369G p.V123V . . . PKD2L1 9033 broad.mit.edu 36 10 102041077 102041077 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016112 exon12 c.A1978C p.K660Q . . . FBXW4 6468 broad.mit.edu 36 10 103361140 103361140 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022039 exon9 c.G1137A p.S379S . . . C10orf76 79591 broad.mit.edu 36 10 103762622 103762622 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024541 exon10 c.G728A p.G243E . . . GBF1 8729 broad.mit.edu 36 10 104117232 104117232 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199378 exon21 c.G2567A p.R856H . . . ACTR1A 10121 broad.mit.edu 36 10 104231831 104231831 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005736 exon8 c.T842G p.F281C . . . TRIM8 81603 broad.mit.edu 36 10 104406546 104406546 + Silent SNP C T T rs41300235 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030912 exon6 c.C1101T p.C367C . . . CCDC147 159686 broad.mit.edu 36 10 106150508 106150508 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008723 exon13 c.G1896A p.K632K . . . SORCS3 22986 broad.mit.edu 36 10 106972911 106972911 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014978 exon20 c.A2782C p.N928H . . . IDI1 3422 broad.mit.edu 36 10 1079330 1079330 + Nonsense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004508 exon3 c.T317G p.L106X . . . TCF7L2 6934 broad.mit.edu 36 10 114901550 114901550 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146284 exon9 c.T997C p.Y333H . . . NRAP 4892 broad.mit.edu 36 10 115375824 115375824 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198060 exon21 c.C2216G p.A739G . . . NRAP 4892 broad.mit.edu 36 10 115396686 115396686 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198060 exon10 c.G979A p.E327K . . . USP6NL 9712 broad.mit.edu 36 10 11545581 11545581 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_014688 exon15 c.G1352T p.R451I . . . NHLRC2 374354 broad.mit.edu 36 10 115653303 115653303 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198514 exon9 c.A1522C p.N508H . . . ADRB1 153 broad.mit.edu 36 10 115794393 115794393 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000684 exon1 c.C512T p.T171M . . . C10orf118 55088 broad.mit.edu 36 10 115885697 115885697 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018017 exon9 c.A1455C p.E485D . . . TDRD1 56165 broad.mit.edu 36 10 115937779 115937779 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198795 exon2 c.T199G p.F67V . . . VWA2 340706 broad.mit.edu 36 10 116027787 116027787 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198496 exon7 c.G691A p.A231T . . . FAM160B1 57700 broad.mit.edu 36 10 116580628 116580628 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020940 exon2 c.G73T p.D25Y . . . ATRNL1 26033 broad.mit.edu 36 10 117051466 117051466 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207303 exon17 c.G2741A p.R914Q . . . PNLIPRP1 5407 broad.mit.edu 36 10 118349603 118349603 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006229 exon9 c.A869G p.E290G . . . KIAA1598 57698 broad.mit.edu 36 10 118701502 118701502 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018330 exon6 c.C442T p.R148X . . . KCNK18 338567 broad.mit.edu 36 10 118959736 118959736 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181840 exon3 c.A1091G p.D364G . . . UPF2 26019 broad.mit.edu 36 10 12034158 12034158 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080599 exon15 c.C2947T p.L983L . . . EIF3A 8661 broad.mit.edu 36 10 120807723 120807723 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003750 exon12 c.G1712A p.R571H . . . RGS10 6001 broad.mit.edu 36 10 121249665 121249665 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005339 exon5 c.C496T p.P166S . . . C10orf119 79892 broad.mit.edu 36 10 121597154 121597154 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024834 exon8 c.C788T p.S263F . . . DHTKD1 55526 broad.mit.edu 36 10 12176147 12176147 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018706 exon7 c.G1229A p.R410Q . . . HTRA1 5654 broad.mit.edu 36 10 124258164 124258164 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002775 exon6 c.C1008T p.D336D . . . DMBT1 1755 broad.mit.edu 36 10 124329134 124329134 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007329 exon10 c.C730T p.R244X . . . C10orf88 80007 broad.mit.edu 36 10 124682098 124682098 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024942 exon6 c.G1173T p.K391N . . . ACADSB 36 broad.mit.edu 36 10 124800612 124800612 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001609 exon9 c.A1048G p.T350A . . . ACADSB 36 broad.mit.edu 36 10 124802596 124802596 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001609 exon10 c.C1158T p.I386I . . . CPXM2 119587 broad.mit.edu 36 10 125641004 125641004 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198148 exon1 c.C162T p.L54L . . . CHST15 51363 broad.mit.edu 36 10 125794274 125794274 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015892 exon3 c.G698A p.R233H . . . CHST15 51363 broad.mit.edu 36 10 125795501 125795501 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015892 exon2 c.G218A p.R73H . . . C10orf137 26098 broad.mit.edu 36 10 127407938 127407938 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015608 exon7 c.C814T p.R272W . . . MMP21 118856 broad.mit.edu 36 10 127448916 127448916 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147191 exon5 c.G1214T p.R405I . . . DHX32 55760 broad.mit.edu 36 10 127559231 127559231 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018180 exon1 c.T153C p.R51R . . . ADAM12 8038 broad.mit.edu 36 10 127724656 127724656 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_021641 exon17 c.C1962A p.V654V . . . DOCK1 1793 broad.mit.edu 36 10 128798575 128798575 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001380 exon25 c.G2527A p.E843K . . . MKI67 4288 broad.mit.edu 36 10 129796140 129796140 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145966 exon12 c.G2874A p.Q958Q . . . MKI67 4288 broad.mit.edu 36 10 129796291 129796291 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145966 exon12 c.G2723A p.R908Q . . . MKI67 4288 broad.mit.edu 36 10 129803332 129803332 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002417 exon7 c.T1330G p.F444V . . . GLRX3 10539 broad.mit.edu 36 10 131849114 131849114 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199868 exon4 c.G341A p.R114Q . . . TCERG1L 256536 broad.mit.edu 36 10 132786602 132786602 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174937 exon11 c.G1561T p.E521X . . . TCERG1L 256536 broad.mit.edu 36 10 132805121 132805121 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174937 exon9 c.G1326A p.P442P . . . JAKMIP3 282973 broad.mit.edu 36 10 133799475 133799475 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105521 exon5 c.A1021C p.N341H . . . HSPA14 51182 broad.mit.edu 36 10 14952641 14952641 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016299 exon13 c.C1420T p.R474C . . . FAM171A1 221061 broad.mit.edu 36 10 15296423 15296423 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001010924 exon8 c.G1170A p.T390T . . . ITGA8 8516 broad.mit.edu 36 10 15766025 15766025 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003638 exon4 c.C552A p.F184L . . . PTER 9317 broad.mit.edu 36 10 16587121 16587121 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001484 exon5 c.C795T p.L265L . . . CUBN 8029 broad.mit.edu 36 10 17167708 17167708 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081 exon16 c.C2004A p.F668L . . . TRDMT1 1787 broad.mit.edu 36 10 17243528 17243528 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004412 exon5 c.C349A p.L117I . . . SLC39A12 221074 broad.mit.edu 36 10 18282275 18282275 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145195 exon2 c.T64G p.F22V . . . NEBL 10529 broad.mit.edu 36 10 21114838 21114838 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173484 exon7 c.C655T p.R219X . . . C10orf140 387640 broad.mit.edu 36 10 21844732 21844732 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207371 exon4 c.G2026A p.D676N . . . PTF1A 256297 broad.mit.edu 36 10 23522754 23522754 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178161 exon2 c.C900T p.V300V . . . KIAA1217 56243 broad.mit.edu 36 10 24762059 24762059 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019590 exon4 c.A683G p.E228G . . . KIAA1217 56243 broad.mit.edu 36 10 24872774 24872774 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019590 exon19 c.A4569G p.P1523P . . . PTCHD3 374308 broad.mit.edu 36 10 27742573 27742573 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001034842 exon1 c.G613A p.E205K . . . WAC 51322 broad.mit.edu 36 10 28946643 28946643 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_100486 exon12 c.G1489A p.E497K . . . BAMBI 25805 broad.mit.edu 36 10 29011222 29011222 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012342 exon3 c.G669T p.E223D . . . SVIL 6840 broad.mit.edu 36 10 29880048 29880048 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003174 exon8 c.G311T p.R104I . . . KIAA1462 57608 broad.mit.edu 36 10 30356638 30356638 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020848 exon3 c.C2445A p.L815L . . . PARD3 56288 broad.mit.edu 36 10 34728316 34728316 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184787 exon7 c.G838A p.D280N . . . GJD4 219770 broad.mit.edu 36 10 35937063 35937063 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153368 exon2 c.G616A p.A206T . . . ZNF248 57209 broad.mit.edu 36 10 38161357 38161357 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021045 exon6 c.C932T p.A311V . . . ZNF33B 7582 broad.mit.edu 36 10 42447388 42447388 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006955 exon4 c.T245G p.F82C . . . BMS1 9790 broad.mit.edu 36 10 42612957 42612957 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014753 exon11 c.G2069A p.R690Q . . . CSGALNACT2 55454 broad.mit.edu 36 10 42982515 42982515 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018590 exon6 c.C1217T p.A406V . . . ZNF485 220992 broad.mit.edu 36 10 43432449 43432449 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145312 exon5 c.A952C p.R318R . . . ZNF32 7580 broad.mit.edu 36 10 43459884 43459884 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006973 exon3 c.C442T p.L148F . . . ALOX5 240 broad.mit.edu 36 10 45198104 45198104 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000698 exon2 c.C318T p.G106G . . . ALOX5 240 broad.mit.edu 36 10 45256014 45256014 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000698 exon8 c.G1112A p.R371Q . . . PPYR1 5540 broad.mit.edu 36 10 46507118 46507118 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005972 exon3 c.G329A p.G110E . . . LRRC18 474354 broad.mit.edu 36 10 49792069 49792069 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006939 exon1 c.T138G p.I46M . . . AKR1C2 1646 broad.mit.edu 36 10 5033872 5033872 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_205845 exon3 c.T86C p.V29A . . . SGMS1 259230 broad.mit.edu 36 10 51736991 51736991 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147156 exon11 c.C1159T p.R387X . . . A1CF 29974 broad.mit.edu 36 10 52250389 52250389 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198818 exon9 c.C796T p.R266X . . . A1CF 29974 broad.mit.edu 36 10 52289656 52289656 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198818 exon4 c.A51C p.E17D . . . NET1 10276 broad.mit.edu 36 10 5484322 5484322 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005863 exon3 c.C203A p.S68X . . . PCDH15 65217 broad.mit.edu 36 10 55261181 55261181 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142767 exon29 c.G3991A p.E1331K . . . PCDH15 65217 broad.mit.edu 36 10 55496646 55496646 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142767 exon17 c.A1986G p.S662S . . . PCDH15 65217 broad.mit.edu 36 10 55747179 55747179 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142767 exon7 c.G623A p.R208Q . . . ANKRD16 54522 broad.mit.edu 36 10 5969970 5969970 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009943 exon2 c.C381T p.G127G . . . FBXO18 84893 broad.mit.edu 36 10 6005665 6005665 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032807 exon17 c.C2551T p.Q851X . . . BICC1 80114 broad.mit.edu 36 10 60230692 60230692 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080512 exon14 c.G1895A p.R632Q . . . PHYHIPL 84457 broad.mit.edu 36 10 60668470 60668470 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143774 exon4 c.C517T p.R173X . . . SLC16A9 220963 broad.mit.edu 36 10 61084133 61084133 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194298 exon5 c.G657T p.K219N . . . ANK3 288 broad.mit.edu 36 10 61502033 61502033 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020987 exon37 c.C8612T p.S2871L . . . ANK3 288 broad.mit.edu 36 10 61502293 61502293 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020987 exon37 c.T8352G p.F2784L . . . ANK3 288 broad.mit.edu 36 10 61504664 61504664 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020987 exon37 c.C5981T p.S1994L . . . TMEM26 219623 broad.mit.edu 36 10 62840308 62840308 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178505 exon6 c.C885T p.L295L . . . JMJD1C 221037 broad.mit.edu 36 10 64644022 64644022 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004241 exon5 c.A1254C p.K418N . . . JMJD1C 221037 broad.mit.edu 36 10 64649740 64649740 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032776 exon4 c.G457A p.D153N . . . CTNNA3 29119 broad.mit.edu 36 10 67710279 67710279 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013266 exon13 c.C1839A p.I613I . . . MYPN 84665 broad.mit.edu 36 10 69629312 69629312 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032578 exon17 c.C3467A p.S1156Y . . . CCAR1 55749 broad.mit.edu 36 10 70178922 70178922 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018237 exon9 c.C850T p.R284C . . . CCAR1 55749 broad.mit.edu 36 10 70179024 70179024 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018237 exon9 c.C952T p.R318X . . . STOX1 219736 broad.mit.edu 36 10 70315945 70315945 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152709 exon3 c.G2387T p.R796I . . . HKDC1 80201 broad.mit.edu 36 10 70687141 70687141 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025130 exon14 c.T1985C p.M662T . . . HK1 3098 broad.mit.edu 36 10 70725412 70725412 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033498 exon4 c.A45G p.K15K . . . H2AFY2 55506 broad.mit.edu 36 10 71538831 71538831 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018649 exon8 c.T815G p.F272C . . . ADAMTS14 140766 broad.mit.edu 36 10 72183727 72183727 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_080722 exon19 c.A2895G p.R965R . . . SFMBT2 57713 broad.mit.edu 36 10 7284465 7284465 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029880 exon13 c.C1470T p.V490V . . . P4HA1 5033 broad.mit.edu 36 10 74476713 74476713 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142595 exon9 c.C1053T p.I351I . . . ECD 11319 broad.mit.edu 36 10 74567795 74567795 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135753 exon11 c.T1332G p.S444S . . . TTC18 118491 broad.mit.edu 36 10 74707104 74707104 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145170 exon22 c.C2630A p.S877X . . . SYNPO2L 79933 broad.mit.edu 36 10 75078613 75078613 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024875 exon2 c.A131C p.K44T . . . C10orf11 83938 broad.mit.edu 36 10 77465774 77465774 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032024 exon2 c.C50A p.S17X . . . KCNMA1 3778 broad.mit.edu 36 10 78317173 78317173 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161353 exon28 c.T3517C p.S1173P . . . KCNMA1 3778 broad.mit.edu 36 10 78514412 78514412 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161353 exon12 c.G1512A p.S504S . . . KIN 22944 broad.mit.edu 36 10 7865114 7865114 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012311 exon2 c.T145C p.S49P . . . DYDC1 143241 broad.mit.edu 36 10 82092037 82092037 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138812 exon5 c.G310T p.E104X . . . LARP4B 23185 broad.mit.edu 36 10 853778 853778 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015155 exon14 c.G1582A p.E528K . . . FAM190B 54462 broad.mit.edu 36 10 86249669 86249669 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018999 exon10 c.G2384A p.R795Q . . . GRID1 2894 broad.mit.edu 36 10 87474282 87474282 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017551 exon11 c.C1665T p.F555F . . . MMRN2 79812 broad.mit.edu 36 10 88693269 88693269 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024756 exon6 c.G1252A p.E418K . . . FAM22A 728118 broad.mit.edu 36 10 88978134 88978134 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099338 exon2 c.G517T p.G173C . . . CH25H 9023 broad.mit.edu 36 10 90956613 90956613 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003956 exon1 c.C417A p.F139L . . . IFIT3 3437 broad.mit.edu 36 10 91088772 91088772 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001549 exon2 c.T380G p.F127C . . . KIF20B 9585 broad.mit.edu 36 10 91469412 91469412 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016195 exon13 c.A1691C p.N564T . . . KIF20B 9585 broad.mit.edu 36 10 91523766 91523766 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016195 exon33 c.G5324A p.R1775Q . . . HTR7 3363 broad.mit.edu 36 10 92606985 92606985 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019859 exon1 c.G424A p.D142N . . . RPP30 10556 broad.mit.edu 36 10 92635567 92635567 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006413 exon6 c.G361A p.D121N . . . HECTD2 143279 broad.mit.edu 36 10 93210235 93210235 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182765 exon3 c.G340A p.E114K . . . TNKS2 80351 broad.mit.edu 36 10 93605366 93605366 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025235 exon23 c.C2929T p.R977X . . . BTAF1 9044 broad.mit.edu 36 10 93743575 93743575 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003972 exon22 c.A3190C p.N1064H . . . IDE 3416 broad.mit.edu 36 10 94204243 94204243 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004969 exon25 c.C2998T p.R1000C . . . IDE 3416 broad.mit.edu 36 10 94258577 94258577 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004969 exon7 c.A948G p.T316T . . . IDE 3416 broad.mit.edu 36 10 94281624 94281624 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004969 exon4 c.C522T p.F174F . . . KIF11 3832 broad.mit.edu 36 10 94398039 94398039 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004523 exon19 c.T2638G p.F880V . . . MYOF 26509 broad.mit.edu 36 10 95060315 95060315 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133337 exon51 c.G5926A p.E1976K . . . MYOF 26509 broad.mit.edu 36 10 95097478 95097478 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133337 exon36 c.G4096A p.D1366N . . . PDE6C 5146 broad.mit.edu 36 10 95371712 95371712 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006204 exon4 c.G757T p.E253X . . . PDE6C 5146 broad.mit.edu 36 10 95385317 95385317 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006204 exon10 c.G1343T p.R448I . . . CYP2C19 1557 broad.mit.edu 36 10 96592612 96592612 + Silent SNP C A A rs3758580 byCluster;byFrequency;byHapMap;by1000genomes TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000769 exon7 c.C990A p.V330V . . . CYP2C9 1559 broad.mit.edu 36 10 96691641 96691641 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000771 exon2 c.T205G p.F69V . . . CYP2C8 1558 broad.mit.edu 36 10 96787050 96787050 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000770 exon9 c.G1298A p.R433Q . . . ZNF518A 9849 broad.mit.edu 36 10 97909905 97909905 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014803 exon6 c.G3836A p.R1279Q . . . DNTT 1791 broad.mit.edu 36 10 98069103 98069103 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004088 exon3 c.G473T p.R158I . . . DNTT 1791 broad.mit.edu 36 10 98082178 98082178 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T T T T Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_004088 exon9 c.T1194C p.D398D . . . DNTT 1791 broad.mit.edu 36 10 98082259 98082259 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004088 exon9 c.G1275T p.K425N . . . DNTT 1791 broad.mit.edu 36 10 98085711 98085711 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004088 exon10 c.A1433G p.D478G . . . C10orf12 26148 broad.mit.edu 36 10 98699036 98699036 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032440 exon6 c.G232A p.E78K . . . MMS19 64210 broad.mit.edu 36 10 99217309 99217309 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022362 exon14 c.C1240A p.L414I . . . SFRP5 6425 broad.mit.edu 36 10 99517596 99517596 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003015 exon3 c.C619T p.R207C . . . C10orf28 27291 broad.mit.edu 36 10 99958518 99958518 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014472 exon4 c.G657A p.E219E . . . FAT3 120114 broad.mit.edu 36 11 91725312 91725313 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001008781 exon1 c.386_387insA p.V129fs . . . TRPC6 7225 broad.mit.edu 36 11 100849667 100849667 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004621 exon7 c.C1792A p.L598I . . . ANGPTL5 253935 broad.mit.edu 36 11 101276439 101276439 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178127 exon7 c.G593T p.R198I . . . ANGPTL5 253935 broad.mit.edu 36 11 101281755 101281755 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178127 exon4 c.G275T p.R92I . . . MMP20 9313 broad.mit.edu 36 11 101953310 101953310 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004771 exon10 c.A1409G p.D470G . . . MMP27 64066 broad.mit.edu 36 11 102070985 102070985 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022122 exon7 c.C956T p.A319V . . . DYNC2H1 79659 broad.mit.edu 36 11 102596607 102596607 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001377 exon57 c.G8992A p.E2998K . . . CASP5 838 broad.mit.edu 36 11 104379225 104379225 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136112 exon4 c.A568C p.K190Q . . . LYVE1 10894 broad.mit.edu 36 11 10537309 10537309 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006691 exon6 c.G894T p.K298N . . . KIAA1826 84437 broad.mit.edu 36 11 105386405 105386405 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032424 exon2 c.G450A p.P150P . . . KBTBD3 143879 broad.mit.edu 36 11 105434873 105434873 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152433 exon2 c.C162A p.F54L . . . GUCY1A2 2977 broad.mit.edu 36 11 106315601 106315601 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000855 exon4 c.A1001G p.D334G . . . CWF19L2 143884 broad.mit.edu 36 11 106792191 106792191 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152434 exon10 c.A1571C p.K524T . . . ALKBH8 91801 broad.mit.edu 36 11 106932759 106932759 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138775 exon3 c.G310T p.E104X . . . ATM 472 broad.mit.edu 36 11 107708703 107708703 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000051 exon53 c.G7793A p.R2598Q . . . EIF4G2 1982 broad.mit.edu 36 11 10780515 10780515 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001418 exon12 c.G1040A p.R347K . . . EXPH5 23086 broad.mit.edu 36 11 107887225 107887225 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015065 exon6 c.G4219A p.E1407K . . . ZC3H12C 85463 broad.mit.edu 36 11 109528867 109528867 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033390 exon3 c.G787T p.E263X . . . RDX 5962 broad.mit.edu 36 11 109609396 109609396 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002906 exon13 c.G1363T p.D455Y . . . LAYN 143903 broad.mit.edu 36 11 110936239 110936239 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178834 exon7 c.A971C p.D324A . . . DIXDC1 85458 broad.mit.edu 36 11 111340562 111340562 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037954 exon2 c.G140A p.R47Q . . . ANKK1 255239 broad.mit.edu 36 11 112770925 112770925 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178510 exon3 c.C545T p.S182L . . . USP28 57646 broad.mit.edu 36 11 113177536 113177536 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020886 exon24 c.G2937T p.M979I . . . BUD13 84811 broad.mit.edu 36 11 116138826 116138826 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032725 exon4 c.G689A p.R230Q . . . ZNF259 8882 broad.mit.edu 36 11 116161783 116161783 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003904 exon5 c.G521T p.R174I . . . TAGLN 6876 broad.mit.edu 36 11 116578976 116578976 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003186 exon2 c.G37A p.E13K . . . RNF214 257160 broad.mit.edu 36 11 116656118 116656118 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077239 exon8 c.A1078G p.K360E . . . DSCAML1 57453 broad.mit.edu 36 11 116856420 116856420 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020693 exon14 c.C2913T p.F971F . . . TMPRSS13 84000 broad.mit.edu 36 11 117279982 117279982 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077263 exon11 c.G1426A p.D476N . . . SCN2B 6327 broad.mit.edu 36 11 117552331 117552331 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004588 exon1 c.G26A p.R9H . . . MLL 4297 broad.mit.edu 36 11 117878978 117878978 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005933 exon27 c.T7152A p.D2384E . . . DDX6 1656 broad.mit.edu 36 11 118131394 118131394 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004397 exon12 c.A1203C p.Q401H . . . CXCR5 643 broad.mit.edu 36 11 118270452 118270452 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032966 exon1 c.G854A p.R285H . . . CCDC84 338657 broad.mit.edu 36 11 118388174 118388174 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198489 exon7 c.G684A p.Q228Q . . . SLC37A4 2542 broad.mit.edu 36 11 118401972 118401972 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164278 exon8 c.G900A p.S300S . . . USP47 55031 broad.mit.edu 36 11 11920808 11920808 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017944 exon19 c.C2460T p.I820I . . . POU2F3 25833 broad.mit.edu 36 11 119622394 119622394 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014352 exon2 c.G55A p.D19N . . . ARHGEF12 23365 broad.mit.edu 36 11 119851375 119851375 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198665 exon32 c.T3169C p.F1057L . . . GRIK4 2900 broad.mit.edu 36 11 120207886 120207886 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014619 exon5 c.C627T p.D209D . . . GRIK4 2900 broad.mit.edu 36 11 120338440 120338440 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014619 exon16 c.C2106T p.F702F . . . SORL1 6653 broad.mit.edu 36 11 120854052 120854052 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003105 exon3 c.G418A p.D140N . . . ZNF202 7753 broad.mit.edu 36 11 123106600 123106600 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003455 exon4 c.A207G p.E69E . . . OR6X1 390260 broad.mit.edu 36 11 123130112 123130112 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005188 exon1 c.G325A p.E109K . . . OR6X1 390260 broad.mit.edu 36 11 123130260 123130260 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005188 exon1 c.C177A p.F59L . . . OR8D4 338662 broad.mit.edu 36 11 123282363 123282363 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005197 exon1 c.C15A p.N5K . . . OR4D5 219875 broad.mit.edu 36 11 123315809 123315809 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001965 exon1 c.T276C p.I92I . . . OR6T1 219874 broad.mit.edu 36 11 123319590 123319590 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005187 exon1 c.C166T p.H56Y . . . MICALCL 84953 broad.mit.edu 36 11 12332954 12332954 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032867 exon8 c.A1877C p.K626T . . . OR10G7 390265 broad.mit.edu 36 11 123414337 123414337 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004463 exon1 c.C582T p.N194N . . . OR8B2 26595 broad.mit.edu 36 11 123758129 123758129 + Silent SNP G A A rs2320234 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005468 exon1 c.C321T p.F107F . . . SIAE 54414 broad.mit.edu 36 11 124035853 124035853 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170601 exon3 c.G286A p.E96K . . . ROBO4 54538 broad.mit.edu 36 11 124269107 124269107 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019055 exon9 c.C1363T p.P455S . . . ROBO4 54538 broad.mit.edu 36 11 124269374 124269374 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019055 exon8 c.C1251T p.C417C . . . SLC37A2 219855 broad.mit.edu 36 11 124454242 124454242 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145290 exon5 c.G339A p.P113P . . . CDON 50937 broad.mit.edu 36 11 125369453 125369453 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016952 exon14 c.T2586G p.F862L . . . CDON 50937 broad.mit.edu 36 11 125398527 125398527 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016952 exon2 c.C55T p.L19L . . . PRDM10 56980 broad.mit.edu 36 11 129290082 129290082 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020228 exon18 c.C2580T p.F860F . . . PRDM10 56980 broad.mit.edu 36 11 129310236 129310236 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020228 exon9 c.C1127A p.S376Y . . . APLP2 334 broad.mit.edu 36 11 129516675 129516675 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001642 exon16 c.C2032T p.R678W . . . ADAMTS8 11095 broad.mit.edu 36 11 129781132 129781132 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007037 exon9 c.C2201T p.A734V . . . ADAMTS8 11095 broad.mit.edu 36 11 129783715 129783715 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007037 exon8 c.A1953C p.E651D . . . NTM 50863 broad.mit.edu 36 11 131685233 131685233 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144058 exon5 c.G679A p.E227K . . . ARNTL 406 broad.mit.edu 36 11 13336599 13336599 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001030273 exon8 c.G135T p.M45I . . . VPS26B 112936 broad.mit.edu 36 11 133600340 133600340 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052875 exon1 c.C114T p.F38F . . . BTBD10 84280 broad.mit.edu 36 11 13399805 13399805 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032320 exon3 c.T258C p.C86C . . . PTH 5741 broad.mit.edu 36 11 13470710 13470710 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000315 exon3 c.C166T p.R56C . . . RRAS2 22800 broad.mit.edu 36 11 14272652 14272652 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177315 exon4 c.C118T p.R40C . . . COPB1 1315 broad.mit.edu 36 11 14457776 14457776 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016451 exon11 c.C1273T p.R425C . . . CYP2R1 120227 broad.mit.edu 36 11 14858825 14858825 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024514 exon3 c.C433T p.R145X . . . ABCC8 6833 broad.mit.edu 36 11 17439778 17439778 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000352 exon5 c.C750T p.I250I . . . USH1C 10083 broad.mit.edu 36 11 17501583 17501583 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153676 exon10 c.G778A p.E260K . . . USH1C 10083 broad.mit.edu 36 11 17505378 17505378 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153676 exon5 c.G464A p.R155Q . . . SPTY2D1 144108 broad.mit.edu 36 11 18593768 18593768 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194285 exon3 c.G629A p.R210Q . . . MRGPRX1 259249 broad.mit.edu 36 11 18912301 18912301 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147199 exon1 c.C607A p.L203I . . . E2F8 79733 broad.mit.edu 36 11 19203701 19203701 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024680 exon12 c.T2064G p.V688V . . . NAV2 89797 broad.mit.edu 36 11 20023786 20023786 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111018 exon14 c.T3704G p.L1235R . . . NAV2 89797 broad.mit.edu 36 11 20069042 20069042 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111018 exon27 c.T5362C p.L1788L . . . SLC6A5 9152 broad.mit.edu 36 11 20582489 20582489 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004211 exon3 c.G622A p.A208T . . . NELL1 4745 broad.mit.edu 36 11 21512588 21512588 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006157 exon16 c.G1738A p.G580S . . . GAS2 2620 broad.mit.edu 36 11 22704460 22704460 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143830 exon4 c.G314A p.G105D . . . MUC15 143662 broad.mit.edu 36 11 26543801 26543801 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135092 exon3 c.A262C p.N88H . . . ANO3 63982 broad.mit.edu 36 11 26625849 26625849 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031418 exon24 c.C2446A p.L816I . . . LGR4 55366 broad.mit.edu 36 11 27346072 27346072 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018490 exon18 c.C2774T p.A925V . . . LGR4 55366 broad.mit.edu 36 11 27354491 27354491 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018490 exon13 c.C1112T p.S371F . . . LGR4 55366 broad.mit.edu 36 11 27360354 27360354 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018490 exon7 c.G715A p.E239K . . . QSER1 79832 broad.mit.edu 36 11 32911973 32911973 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001076786 exon4 c.C2206A p.L736I . . . C11orf41 25758 broad.mit.edu 36 11 33521011 33521011 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012194 exon1 c.T435A p.N145K . . . NAT10 55226 broad.mit.edu 36 11 34086416 34086416 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024662 exon2 c.G68T p.R23I . . . CAT 847 broad.mit.edu 36 11 34430230 34430230 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001752 exon4 c.G380A p.R127Q . . . RAG1 5896 broad.mit.edu 36 11 36552960 36552960 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000448 exon2 c.G1530A p.E510E . . . RAG1 5896 broad.mit.edu 36 11 36553423 36553423 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000448 exon2 c.G1993T p.E665X . . . C11orf74 119710 broad.mit.edu 36 11 36637184 36637184 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138787 exon6 c.G538T p.E180X . . . NUP98 4928 broad.mit.edu 36 11 3702949 3702949 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T T T T Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_005387 exon15 c.A1858C p.N620H . . . TTC17 55761 broad.mit.edu 36 11 43376171 43376171 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018259 exon8 c.A990G p.Q330Q . . . OR52K2 119774 broad.mit.edu 36 11 4428000 4428000 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005172 exon1 c.C855T p.F285F . . . ZNF408 79797 broad.mit.edu 36 11 46683909 46683909 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024741 exon5 c.G2083A p.A695T . . . MADD 8567 broad.mit.edu 36 11 47264642 47264642 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003682 exon15 c.G2634A p.T878T . . . MYBPC3 4607 broad.mit.edu 36 11 47329493 47329493 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000256 exon2 c.C165T p.Y55Y . . . PSMC3 5702 broad.mit.edu 36 11 47402749 47402749 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002804 exon4 c.A375C p.K125N . . . PTPMT1 114971 broad.mit.edu 36 11 47549751 47549751 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175732 exon4 c.G600T p.K200N . . . AGBL2 79841 broad.mit.edu 36 11 47668957 47668957 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024783 exon9 c.G878A p.R293Q . . . OR51T1 401665 broad.mit.edu 36 11 4860403 4860403 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004759 exon1 c.G779A p.R260Q . . . OR51G2 81282 broad.mit.edu 36 11 4892799 4892799 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005238 exon1 c.C671T p.A224V . . . OR51G2 81282 broad.mit.edu 36 11 4892846 4892846 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005238 exon1 c.C624T p.I208I . . . OR51G2 81282 broad.mit.edu 36 11 4893298 4893298 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005238 exon1 c.C172T p.R58C . . . OR51A4 401666 broad.mit.edu 36 11 4924176 4924176 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005329 exon1 c.C731A p.S244X . . . OR51L1 119682 broad.mit.edu 36 11 4977291 4977291 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004755 exon1 c.A503C p.Y168S . . . OR4C46 119749 broad.mit.edu 36 11 51372161 51372161 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004703 exon1 c.G304A p.E102K . . . OR51M1 390059 broad.mit.edu 36 11 5367903 5367903 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004756 exon1 c.C699A p.I233I . . . OR51Q1 390061 broad.mit.edu 36 11 5400552 5400552 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004757 exon1 c.C546T p.L182L . . . OR4A16 81327 broad.mit.edu 36 11 54867942 54867942 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005274 exon1 c.G690T p.E230D . . . OR4P4 81300 broad.mit.edu 36 11 55162530 55162530 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004124 exon1 c.T121C p.L41L . . . OR5D13 390142 broad.mit.edu 36 11 55298181 55298181 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001967 exon1 c.G692A p.R231Q . . . OR10AG1 282770 broad.mit.edu 36 11 55491657 55491657 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005491 exon1 c.G859T p.D287Y . . . OR8H2 390151 broad.mit.edu 36 11 55629668 55629668 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005200 exon1 c.A574G p.T192A . . . OR5T3 390154 broad.mit.edu 36 11 55776619 55776619 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004747 exon1 c.C368T p.S123L . . . OR8H1 219469 broad.mit.edu 36 11 55814983 55814983 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005199 exon1 c.G132A p.G44G . . . OR8K1 390157 broad.mit.edu 36 11 55870444 55870444 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002907 exon1 c.C354A p.L118L . . . OR5R1 219479 broad.mit.edu 36 11 55941355 55941355 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004744 exon1 c.A930C p.E310D . . . OR5M3 219482 broad.mit.edu 36 11 55993749 55993749 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004742 exon1 c.G801A p.E267E . . . OR5M11 219487 broad.mit.edu 36 11 56066922 56066922 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005245 exon1 c.C388T p.R130C . . . OR5AP2 338675 broad.mit.edu 36 11 56165582 56165582 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002925 exon1 c.A910C p.K304Q . . . TRIM6-TRIM34 445372 broad.mit.edu 36 11 5620254 5620254 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003827 exon6 c.G816T p.K272N . . . RTN4RL2 349667 broad.mit.edu 36 11 56991844 56991844 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178570 exon2 c.G218A p.R73H . . . SERPING1 710 broad.mit.edu 36 11 57138388 57138388 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000062 exon8 c.T1261G p.F421V . . . CTNND1 1500 broad.mit.edu 36 11 57327746 57327746 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001331 exon8 c.G1498T p.E500X . . . OR9I1 219954 broad.mit.edu 36 11 57642598 57642598 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005211 exon1 c.G895T p.D299Y . . . OR9I1 219954 broad.mit.edu 36 11 57643113 57643113 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005211 exon1 c.G380A p.R127H . . . OR9Q2 219957 broad.mit.edu 36 11 57715416 57715416 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005283 exon1 c.G878A p.R293K . . . OR5B17 219965 broad.mit.edu 36 11 57882193 57882193 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005489 exon1 c.C926T p.S309F . . . OR5B12 390191 broad.mit.edu 36 11 57963934 57963934 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004733 exon1 c.C267A p.F89L . . . OR52E4 390081 broad.mit.edu 36 11 5862469 5862469 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005165 exon1 c.G371A p.R124H . . . FAM111B 374393 broad.mit.edu 36 11 58649355 58649355 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142703 exon3 c.G1119A p.P373P . . . OR4D6 219983 broad.mit.edu 36 11 58981068 58981068 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004708 exon1 c.C59T p.S20F . . . OR4D11 219986 broad.mit.edu 36 11 59027784 59027784 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004706 exon1 c.C160T p.R54C . . . OR56A3 390083 broad.mit.edu 36 11 5925612 5925612 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003443 exon1 c.A460G p.T154A . . . STX3 6809 broad.mit.edu 36 11 59312988 59312988 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178040 exon4 c.A281C p.K94T . . . GIF 2694 broad.mit.edu 36 11 59368052 59368052 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005142 exon2 c.G132T p.E44D . . . MS4A2 2206 broad.mit.edu 36 11 59618044 59618044 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000139 exon6 c.T569C p.I190T . . . MS4A8B 83661 broad.mit.edu 36 11 60224917 60224917 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031457 exon2 c.C8T p.S3L . . . MS4A8B 83661 broad.mit.edu 36 11 60239084 60239084 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031457 exon6 c.G549A p.A183A . . . ZP1 22917 broad.mit.edu 36 11 60391701 60391701 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_207341 exon1 c.G91A p.D31N . . . PRPF19 27339 broad.mit.edu 36 11 60415288 60415288 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014502 exon16 c.G1441A p.V481M . . . VPS37C 55048 broad.mit.edu 36 11 60656098 60656098 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017966 exon5 c.T838C p.S280P . . . VWCE 220001 broad.mit.edu 36 11 60788619 60788619 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152718 exon19 c.G2146T p.E716X . . . OR52B2 255725 broad.mit.edu 36 11 6147849 6147849 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004052 exon1 c.C284A p.A95D . . . TAF6L 10629 broad.mit.edu 36 11 62305965 62305965 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006473 exon7 c.G555A p.T185T . . . SLC3A2 6520 broad.mit.edu 36 11 62409253 62409253 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002394 exon9 c.G1150A p.D384N . . . SLC22A8 9376 broad.mit.edu 36 11 62538859 62538859 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184732 exon2 c.C148T p.R50C . . . SLC22A9 114571 broad.mit.edu 36 11 62898074 62898074 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080866 exon4 c.T794C p.V265A . . . RTN3 10313 broad.mit.edu 36 11 63243508 63243508 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201428 exon2 c.G901T p.A301S . . . NRXN2 9379 broad.mit.edu 36 11 64166649 64166649 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138734 exon1 c.G203A p.S68N . . . RASGRP2 10235 broad.mit.edu 36 11 64265017 64265017 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098670 exon5 c.G350A p.S117N . . . TRIM3 10612 broad.mit.edu 36 11 6433931 6433931 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006458 exon8 c.G1480A p.A494T . . . ARFIP2 23647 broad.mit.edu 36 11 6455625 6455625 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012402 exon7 c.C769T p.R257X . . . PCNXL3 399909 broad.mit.edu 36 11 65147565 65147565 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032223 exon12 c.C2385T p.F795F . . . CTSW 1521 broad.mit.edu 36 11 65405455 65405455 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001335 exon3 c.G174A p.E58E . . . CATSPER1 117144 broad.mit.edu 36 11 65550101 65550101 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053054 exon1 c.G326A p.R109H . . . BRMS1 25855 broad.mit.edu 36 11 65865049 65865049 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015399 exon5 c.G403A p.E135K . . . BBS1 582 broad.mit.edu 36 11 66038723 66038723 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024649 exon4 c.G430T p.E144X . . . ZDHHC24 254359 broad.mit.edu 36 11 66067994 66067994 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207340 exon2 c.C316T p.R106C . . . DCHS1 8642 broad.mit.edu 36 11 6617860 6617860 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003737 exon2 c.T1561C p.F521L . . . ALDH3B1 221 broad.mit.edu 36 11 67546722 67546722 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000694 exon8 c.G1031A p.R344H . . . OR2AG1 144125 broad.mit.edu 36 11 6762962 6762962 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004489 exon1 c.A118G p.I40V . . . PPP6R3 55291 broad.mit.edu 36 11 68072237 68072237 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164164 exon6 c.G541A p.D181N . . . PPP6R3 55291 broad.mit.edu 36 11 68100058 68100058 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164164 exon14 c.G1363T p.E455X . . . OR10A5 144124 broad.mit.edu 36 11 6824374 6824374 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178168 exon1 c.T885C p.N295N . . . OR2D2 120776 broad.mit.edu 36 11 6869673 6869673 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003700 exon1 c.T635G p.F212C . . . OR2D3 120775 broad.mit.edu 36 11 6899057 6899057 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004684 exon1 c.C249A p.S83S . . . OR2D3 120775 broad.mit.edu 36 11 6899755 6899755 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004684 exon1 c.C947T p.A316V . . . ZNF215 7762 broad.mit.edu 36 11 6919444 6919444 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013250 exon4 c.G467A p.R156Q . . . PPFIA1 8500 broad.mit.edu 36 11 69796179 69796179 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003626 exon2 c.G253A p.A85T . . . FOLR1 2348 broad.mit.edu 36 11 71580908 71580908 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016724 exon3 c.T43C p.W15R . . . C2CD3 26005 broad.mit.edu 36 11 73492037 73492037 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015531 exon14 c.T2367G p.N789K . . . POLD3 10714 broad.mit.edu 36 11 74007470 74007470 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006591 exon6 c.G633A p.T211T . . . DGAT2 84649 broad.mit.edu 36 11 75189144 75189144 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032564 exon8 c.C1110T p.F370F . . . UVRAG 7405 broad.mit.edu 36 11 75240613 75240613 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003369 exon2 c.A155G p.N52S . . . C11orf30 56946 broad.mit.edu 36 11 75934546 75934546 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020193 exon20 c.C3331T p.R1111C . . . PAK1 5058 broad.mit.edu 36 11 76781134 76781134 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002576 exon2 c.G80A p.G27D . . . KCTD14 65987 broad.mit.edu 36 11 77405331 77405331 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023930 exon2 c.G724A p.E242K . . . ALG8 79053 broad.mit.edu 36 11 77502648 77502648 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007027 exon7 c.C709T p.R237C . . . OR5P2 120065 broad.mit.edu 36 11 7774213 7774213 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153444 exon1 c.A853G p.I285V . . . NARS2 79731 broad.mit.edu 36 11 77948250 77948250 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024678 exon5 c.G577T p.E193X . . . NARS2 79731 broad.mit.edu 36 11 77960118 77960118 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024678 exon2 c.G161A p.R54Q . . . PCF11 51585 broad.mit.edu 36 11 82556172 82556172 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015885 exon7 c.G2069A p.R690Q . . . CCDC89 220388 broad.mit.edu 36 11 85074300 85074300 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152723 exon1 c.G522A p.A174A . . . SYTL2 54843 broad.mit.edu 36 11 85113412 85113412 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206927 exon1 c.A1736C p.E579A . . . SYTL2 54843 broad.mit.edu 36 11 85113478 85113478 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206927 exon1 c.C1670A p.S557Y . . . PICALM 8301 broad.mit.edu 36 11 85400983 85400983 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007166 exon6 c.T647G p.I216S . . . CCDC81 60494 broad.mit.edu 36 11 85808692 85808692 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021827 exon13 c.G1496A p.R499K . . . CTSC 1075 broad.mit.edu 36 11 87673355 87673355 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001814 exon5 c.C748T p.R250X . . . GRM5 2915 broad.mit.edu 36 11 87940159 87940159 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000842 exon8 c.G2340A p.T780T . . . TYR 7299 broad.mit.edu 36 11 88564023 88564023 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000372 exon2 c.C825T p.V275V . . . FOLH1B 219595 broad.mit.edu 36 11 89069463 89069463 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153696 exon13 c.G1061T p.R354I . . . TRIM49 57093 broad.mit.edu 36 11 89177262 89177262 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_020358 exon3 c.C24A p.V8V . . . NAALAD2 10003 broad.mit.edu 36 11 89535823 89535823 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005467 exon9 c.G1048A p.G350R . . . NAALAD2 10003 broad.mit.edu 36 11 89548822 89548822 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005467 exon15 c.G1537A p.A513T . . . NRIP3 56675 broad.mit.edu 36 11 8965695 8965695 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020645 exon3 c.C398A p.S133Y . . . SCUBE2 57758 broad.mit.edu 36 11 9008961 9008961 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020974 exon17 c.G2090A p.R697Q . . . FAT3 120114 broad.mit.edu 36 11 91725598 91725598 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008781 exon1 c.G672T p.K224N . . . FAT3 120114 broad.mit.edu 36 11 92170786 92170786 + Silent SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008781 exon9 c.T4959G p.A1653A . . . SLC36A4 120103 broad.mit.edu 36 11 92527028 92527028 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152313 exon10 c.C1101A p.F367L . . . HEPHL1 341208 broad.mit.edu 36 11 93484701 93484701 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098672 exon20 c.C3473T p.A1158V . . . AMOTL1 154810 broad.mit.edu 36 11 94172991 94172991 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130847 exon3 c.G987A p.E329E . . . ENDOD1 23052 broad.mit.edu 36 11 94501729 94501729 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015036 exon2 c.A841C p.K281Q . . . JRKL 8690 broad.mit.edu 36 11 95764866 95764866 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003772 exon1 c.G1405T p.E469X . . . SLC5A8 160728 broad.mit.edu 36 12 100084502 100084502 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145913 exon12 c.A1427G p.D476G . . . UTP20 27340 broad.mit.edu 36 12 100208134 100208134 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014503 exon7 c.T686G p.F229C . . . UTP20 27340 broad.mit.edu 36 12 100229699 100229699 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014503 exon20 c.C2303T p.T768M . . . MYBPC1 4604 broad.mit.edu 36 12 100562587 100562587 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002465 exon12 c.C847A p.L283I . . . CLEC12B 387837 broad.mit.edu 36 12 10056727 10056727 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129998 exon2 c.G168A p.G56G . . . CLEC12B 387837 broad.mit.edu 36 12 10059561 10059561 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129998 exon5 c.C648A p.F216L . . . SYCP3 50511 broad.mit.edu 36 12 100652903 100652903 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177948 exon5 c.A286G p.T96A . . . PMCH 5367 broad.mit.edu 36 12 101115573 101115573 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002674 exon1 c.G106A p.D36N . . . PAH 5053 broad.mit.edu 36 12 101830803 101830803 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000277 exon2 c.A64G p.T22A . . . STAB2 55576 broad.mit.edu 36 12 102681435 102681435 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017564 exon68 c.G7524A p.K2508K . . . GLT8D2 83468 broad.mit.edu 36 12 102914687 102914687 + Missense_Mutation SNP C T T rs7133444 byHapMap TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031302 exon8 c.G556A p.D186N . . . HCFC2 29915 broad.mit.edu 36 12 102998708 102998708 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013320 exon5 c.G737A p.S246N . . . SLC41A2 84102 broad.mit.edu 36 12 103784386 103784386 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032148 exon6 c.C1129A p.L377I . . . KIAA1033 23325 broad.mit.edu 36 12 104058837 104058837 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015275 exon17 c.G1591A p.E531K . . . CKAP4 10970 broad.mit.edu 36 12 105158137 105158137 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006825 exon2 c.G604A p.E202K . . . TCP11L2 255394 broad.mit.edu 36 12 105253580 105253580 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152772 exon7 c.A806C p.E269A . . . POLR3B 55703 broad.mit.edu 36 12 105362431 105362431 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018082 exon19 c.C2016T p.I672I . . . POLR3B 55703 broad.mit.edu 36 12 105372531 105372531 + Silent SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018082 exon20 c.T2205G p.A735A . . . BTBD11 121551 broad.mit.edu 36 12 106560071 106560071 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017523 exon12 c.T1526G p.I509S . . . WSCD2 9671 broad.mit.edu 36 12 107150780 107150780 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014653 exon7 c.C1122T p.F374F . . . CMKLR1 1240 broad.mit.edu 36 12 107210626 107210626 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142343 exon4 c.G244A p.A82T . . . ACACB 32 broad.mit.edu 36 12 108089116 108089116 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001093 exon2 c.G721T p.D241Y . . . FOXN4 121643 broad.mit.edu 36 12 108207640 108207640 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213596 exon8 c.C753T p.F251F . . . MMAB 326625 broad.mit.edu 36 12 108483273 108483273 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_052845 exon7 c.C539T p.S180L . . . TAS2R10 50839 broad.mit.edu 36 12 10869781 10869781 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023921 exon1 c.C355A p.L119I . . . TRPV4 59341 broad.mit.edu 36 12 108725269 108725269 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021625 exon4 c.G622A p.D208N . . . HVCN1 84329 broad.mit.edu 36 12 109573453 109573453 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032369 exon6 c.G595T p.G199C . . . CUX2 23316 broad.mit.edu 36 12 110215651 110215651 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015267 exon6 c.C455T p.S152L . . . TAS2R50 259296 broad.mit.edu 36 12 11029856 11029856 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176890 exon1 c.C871T p.L291F . . . TAS2R20 259295 broad.mit.edu 36 12 11040978 11040978 + Missense_Mutation SNP C T T rs10845279 byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176889 exon1 c.G764A p.R255Q . . . BRAP 8315 broad.mit.edu 36 12 110603954 110603954 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006768 exon3 c.G313T p.D105Y . . . NAA25 80018 broad.mit.edu 36 12 111012916 111012916 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024953 exon3 c.C280T p.R94X . . . TAS2R30 259293 broad.mit.edu 36 12 11177658 11177658 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001097643 exon1 c.G453A p.E151E . . . OAS1 4938 broad.mit.edu 36 12 111841610 111841610 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016816 exon6 c.G1072A p.D358N . . . OAS3 4940 broad.mit.edu 36 12 111884953 111884953 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006187 exon9 c.C1947A p.F649L . . . OAS2 4939 broad.mit.edu 36 12 111909429 111909429 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001032731 exon2 c.C381A p.F127L . . . OAS2 4939 broad.mit.edu 36 12 111932615 111932615 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016817 exon11 c.G2103T p.E701D . . . RBM19 9904 broad.mit.edu 36 12 112745442 112745442 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_016196 exon24 c.C2853T p.S951S . . . NOS1 4842 broad.mit.edu 36 12 116149683 116149683 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000620 exon23 c.C3552A p.S1184S . . . KSR2 283455 broad.mit.edu 36 12 116447320 116447320 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173598 exon14 c.C1852T p.R618C . . . KSR2 283455 broad.mit.edu 36 12 116890281 116890281 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173598 exon1 c.G76T p.E26X . . . RFC5 5985 broad.mit.edu 36 12 116941933 116941933 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181578 exon4 c.G181T p.E61X . . . RFC5 5985 broad.mit.edu 36 12 116947068 116947068 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130112 exon7 c.T196G p.F66V . . . TAOK3 51347 broad.mit.edu 36 12 117099410 117099410 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016281 exon16 c.T1674G p.I558M . . . SRRM4 84530 broad.mit.edu 36 12 118047635 118047635 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194286 exon7 c.C582A p.S194R . . . SRRM4 84530 broad.mit.edu 36 12 118067576 118067576 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194286 exon9 c.G779T p.G260V . . . CIT 11113 broad.mit.edu 36 12 118745013 118745013 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007174 exon9 c.C1105T p.R369C . . . GCN1L1 10985 broad.mit.edu 36 12 119077182 119077182 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006836 exon31 c.T3676G p.S1226A . . . GCN1L1 10985 broad.mit.edu 36 12 119090419 119090419 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006836 exon16 c.T1588G p.F530V . . . SIRT4 23409 broad.mit.edu 36 12 119234902 119234902 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012240 exon3 c.C758T p.A253V . . . CABP1 9478 broad.mit.edu 36 12 119572857 119572857 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031205 exon1 c.C34A p.L12I . . . KDM2B 84678 broad.mit.edu 36 12 120455167 120455167 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032590 exon8 c.C858A p.I286I . . . WDR66 144406 broad.mit.edu 36 12 120882973 120882973 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178003 exon14 c.C2233T p.R745X . . . WDR66 144406 broad.mit.edu 36 12 120926009 120926009 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144668 exon22 c.C3406A p.L1136I . . . CLIP1 6249 broad.mit.edu 36 12 121367253 121367253 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198240 exon17 c.G3331T p.E1111X . . . CLIP1 6249 broad.mit.edu 36 12 121397954 121397954 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002956 exon9 c.G1394A p.R465H . . . ZCCHC8 55596 broad.mit.edu 36 12 121533981 121533981 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_017612 exon6 c.C584T p.S195F . . . ZCCHC8 55596 broad.mit.edu 36 12 121551322 121551322 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017612 exon1 c.T19G p.F7V . . . RSRC2 65117 broad.mit.edu 36 12 121556043 121556043 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023012 exon10 c.G1289A p.G430E . . . KNTC1 9735 broad.mit.edu 36 12 121607964 121607964 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014708 exon17 c.G1353A p.W451X . . . KNTC1 9735 broad.mit.edu 36 12 121618865 121618865 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014708 exon21 c.G1709A p.R570Q . . . PITPNM2 57605 broad.mit.edu 36 12 122063114 122063114 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020845 exon4 c.C414T p.I138I . . . MPHOSPH9 10198 broad.mit.edu 36 12 122207341 122207341 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022782 exon20 c.A3062C p.K1021T . . . GTF2H3 2967 broad.mit.edu 36 12 122710681 122710681 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001516 exon13 c.T873G p.I291M . . . DNAH10 196385 broad.mit.edu 36 12 122899297 122899297 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207437 exon33 c.G5663A p.R1888Q . . . DNAH10 196385 broad.mit.edu 36 12 122915180 122915180 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207437 exon39 c.G6640A p.A2214T . . . DNAH10 196385 broad.mit.edu 36 12 122925906 122925906 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207437 exon46 c.C7760T p.S2587L . . . DNAH10 196385 broad.mit.edu 36 12 122980196 122980196 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207437 exon71 c.G12195A p.T4065T . . . AACS 65985 broad.mit.edu 36 12 124124420 124124420 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023928 exon2 c.A179G p.D60G . . . CREBL2 1389 broad.mit.edu 36 12 12681783 12681783 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001310 exon3 c.T226C p.C76R . . . TMEM132D 121256 broad.mit.edu 36 12 128124458 128124458 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133448 exon9 c.A3215G p.D1072G . . . FZD10 11211 broad.mit.edu 36 12 129214792 129214792 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007197 exon1 c.A1352G p.Y451C . . . RIMBP2 23504 broad.mit.edu 36 12 129456676 129456676 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015347 exon17 c.T2991G p.F997L . . . GPR133 283383 broad.mit.edu 36 12 130053710 130053710 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198827 exon10 c.G1054A p.D352N . . . GPR133 283383 broad.mit.edu 36 12 130159276 130159276 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198827 exon18 c.G1942A p.A648T . . . SFSWAP 6433 broad.mit.edu 36 12 130805965 130805965 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004592 exon10 c.C1536T p.G512G . . . EP400 57634 broad.mit.edu 36 12 131056663 131056663 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015409 exon14 c.G2986A p.D996N . . . EP400 57634 broad.mit.edu 36 12 131088477 131088477 + Silent SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015409 exon32 c.T6087G p.V2029V . . . EP400 57634 broad.mit.edu 36 12 131103702 131103702 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015409 exon42 c.C7450T p.R2484X . . . GSG1 83445 broad.mit.edu 36 12 13131377 13131377 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153823 exon5 c.T614C p.V205A . . . POLE 5426 broad.mit.edu 36 12 131760362 131760362 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006231 exon13 c.G1231T p.V411L . . . CHFR 55743 broad.mit.edu 36 12 131948213 131948213 + Missense_Mutation SNP G A A rs35206714 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018223 exon7 c.C577T p.L193F . . . ZNF26 7574 broad.mit.edu 36 12 132097406 132097406 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019591 exon4 c.G868A p.E290K . . . ZNF140 7699 broad.mit.edu 36 12 132192730 132192730 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003440 exon5 c.G794T p.R265I . . . ATF7IP 55729 broad.mit.edu 36 12 14480372 14480372 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018179 exon4 c.C1711T p.R571X . . . WBP11 51729 broad.mit.edu 36 12 14833287 14833287 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016312 exon11 c.C1357T p.P453S . . . C12orf60 144608 broad.mit.edu 36 12 14867169 14867169 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175874 exon2 c.A33G p.R11R . . . PTPRO 5800 broad.mit.edu 36 12 15545855 15545855 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002848 exon5 c.C696T p.I232I . . . MGST1 4257 broad.mit.edu 36 12 16401879 16401879 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145764 exon3 c.A200G p.D67G . . . SLC6A12 6539 broad.mit.edu 36 12 174701 174701 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122847 exon13 c.C1380T p.C460C . . . PIK3C2G 5288 broad.mit.edu 36 12 18382627 18382627 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004570 exon9 c.G1273A p.E425K . . . CACNA2D4 93589 broad.mit.edu 36 12 1865665 1865665 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172364 exon8 c.C978T p.F326F . . . PLCZ1 89869 broad.mit.edu 36 12 18740440 18740440 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033123 exon11 c.A1202C p.K401T . . . PLCZ1 89869 broad.mit.edu 36 12 18767685 18767685 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033123 exon4 c.G194A p.R65Q . . . PDE3A 5139 broad.mit.edu 36 12 20694751 20694751 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000921 exon14 c.G2875T p.E959X . . . SLCO1B1 10599 broad.mit.edu 36 12 21246886 21246886 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006446 exon10 c.G1330T p.G444X . . . SLCO1B1 10599 broad.mit.edu 36 12 21261379 21261379 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006446 exon12 c.C1557A p.A519A . . . SLCO1A2 6579 broad.mit.edu 36 12 21341672 21341672 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_134431 exon10 c.C1008A p.I336I . . . PYROXD1 79912 broad.mit.edu 36 12 21511693 21511693 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024854 exon11 c.G1128A p.W376X . . . C12orf39 80763 broad.mit.edu 36 12 21571375 21571375 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030572 exon3 c.C127A p.L43I . . . GYS2 2998 broad.mit.edu 36 12 21584684 21584684 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021957 exon14 c.G1736A p.R579H . . . LDHB 3945 broad.mit.edu 36 12 21691165 21691165 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002300 exon3 c.G182A p.G61E . . . ABCC9 10060 broad.mit.edu 36 12 21854080 21854080 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020297 exon35 c.A4288G p.M1430V . . . ETNK1 55500 broad.mit.edu 36 12 22688040 22688040 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018638 exon2 c.G500T p.R167I . . . CACNA1C 775 broad.mit.edu 36 12 2428446 2428446 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129842 exon4 c.C521T p.A174V . . . LYRM5 144363 broad.mit.edu 36 12 25248174 25248174 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001660 exon2 c.C17A p.S6Y . . . ITPR2 3709 broad.mit.edu 36 12 26644200 26644200 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002223 exon29 c.T3788G p.F1263C . . . ITPR2 3709 broad.mit.edu 36 12 26666601 26666601 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002223 exon25 c.G3127T p.E1043X . . . ITPR2 3709 broad.mit.edu 36 12 26726102 26726102 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002223 exon13 c.A1381C p.N461H . . . C12orf11 55726 broad.mit.edu 36 12 26957749 26957749 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018164 exon14 c.G1713T p.K571N . . . KDM5A 5927 broad.mit.edu 36 12 272540 272540 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042603 exon27 c.G4512A p.K1504K . . . ARNTL2 56938 broad.mit.edu 36 12 27447710 27447710 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020183 exon14 c.G1555T p.D519Y . . . KLHDC5 57542 broad.mit.edu 36 12 27836061 27836061 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020782 exon2 c.T1026C p.C342C . . . CCDC91 55297 broad.mit.edu 36 12 28406643 28406643 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018318 exon6 c.A582G p.K194K . . . OVCH1 341350 broad.mit.edu 36 12 29489492 29489492 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183378 exon23 c.T2867C p.V956A . . . OVCH1 341350 broad.mit.edu 36 12 29516069 29516069 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183378 exon16 c.G1789A p.D597N . . . OVCH1 341350 broad.mit.edu 36 12 29530485 29530485 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183378 exon8 c.C956A p.S319Y . . . OVCH1 341350 broad.mit.edu 36 12 29540787 29540787 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183378 exon2 c.G152T p.R51I . . . TMTC1 83857 broad.mit.edu 36 12 29795940 29795940 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193451 exon5 c.C864T p.C288C . . . IPO8 10526 broad.mit.edu 36 12 30678362 30678362 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_006390 exon23 c.G2821A p.A941T . . . IPO8 10526 broad.mit.edu 36 12 30728569 30728569 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006390 exon3 c.G256A p.E86K . . . CAPRIN2 65981 broad.mit.edu 36 12 30754497 30754497 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002259 exon18 c.G2990A p.R997Q . . . DENND5B 160518 broad.mit.edu 36 12 31496343 31496343 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144973 exon5 c.C1427A p.S476Y . . . C12orf35 55196 broad.mit.edu 36 12 32027372 32027372 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018169 exon4 c.C2216T p.S739L . . . BICD1 636 broad.mit.edu 36 12 32371786 32371786 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003398 exon5 c.C1130T p.A377V . . . BICD1 636 broad.mit.edu 36 12 32372622 32372622 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003398 exon5 c.G1966T p.A656S . . . BICD1 636 broad.mit.edu 36 12 32421789 32421789 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001714 exon10 c.C2889T p.C963C . . . FGD4 121512 broad.mit.edu 36 12 32682989 32682989 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139241 exon16 c.C2036T p.A679V . . . KDM5A 5927 broad.mit.edu 36 12 363491 363491 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042603 exon3 c.G333A p.E111E . . . KIF21A 55605 broad.mit.edu 36 12 37974530 37974530 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173465 exon34 c.A4829G p.D1610G . . . PARP11 57097 broad.mit.edu 36 12 3801354 3801354 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020367 exon6 c.G494A p.R165Q . . . PARP11 57097 broad.mit.edu 36 12 3809322 3809322 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020367 exon2 c.T142C p.F48L . . . ABCD2 225 broad.mit.edu 36 12 38253828 38253828 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005164 exon9 c.G1960A p.A654T . . . ABCD2 225 broad.mit.edu 36 12 38299477 38299477 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_005164 exon1 c.G208A p.E70K . . . LRRK2 120892 broad.mit.edu 36 12 38912373 38912373 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198578 exon3 c.G268T p.E90X . . . PDZRN4 29951 broad.mit.edu 36 12 40253153 40253153 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164595 exon10 c.A2305G p.K769E . . . ZCRB1 85437 broad.mit.edu 36 12 40994007 40994007 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033114 exon6 c.C382T p.R128C . . . PRICKLE1 144165 broad.mit.edu 36 12 41145230 41145230 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144882 exon7 c.T873C p.C291C . . . PRICKLE1 144165 broad.mit.edu 36 12 41146445 41146445 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144882 exon6 c.T593G p.I198S . . . ADAMTS20 80070 broad.mit.edu 36 12 42119981 42119981 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025003 exon17 c.G2449T p.E817X . . . PUS7L 83448 broad.mit.edu 36 12 42434958 42434958 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098615 exon2 c.G358T p.E120X . . . IRAK4 51135 broad.mit.edu 36 12 42453020 42453020 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016123 exon5 c.A529G p.T177A . . . IRAK4 51135 broad.mit.edu 36 12 42462511 42462511 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016123 exon9 c.C1076T p.A359V . . . NELL2 4753 broad.mit.edu 36 12 43188999 43188999 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145108 exon20 c.C2436T p.C812C . . . ANO6 196527 broad.mit.edu 36 12 43982130 43982130 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025356 exon2 c.G137A p.R46Q . . . ANO6 196527 broad.mit.edu 36 12 44109260 44109260 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025356 exon20 c.C2632A p.L878I . . . FGF6 2251 broad.mit.edu 36 12 4424810 4424810 + Missense_Mutation SNP G A A rs17183529 byFrequency TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020996 exon1 c.C188T p.A63V . . . SRSF2IP 9169 broad.mit.edu 36 12 44607121 44607121 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004719 exon11 c.G2630T p.R877I . . . SRSF2IP 9169 broad.mit.edu 36 12 44611565 44611565 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004719 exon10 c.G832A p.E278K . . . C12orf4 57102 broad.mit.edu 36 12 4513634 4513634 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020374 exon3 c.G274T p.E92X . . . FAM113B 91523 broad.mit.edu 36 12 45915164 45915164 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138371 exon2 c.C51T p.F17F . . . COL2A1 1280 broad.mit.edu 36 12 46654745 46654745 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033150 exon51 c.A3847G p.T1283A . . . SENP1 29843 broad.mit.edu 36 12 46729033 46729033 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014554 exon14 c.T1557G p.F519L . . . SENP1 29843 broad.mit.edu 36 12 46776446 46776446 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014554 exon4 c.G167A p.R56Q . . . C12orf54 121273 broad.mit.edu 36 12 47173017 47173017 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152319 exon7 c.A214G p.T72A . . . DDX23 9416 broad.mit.edu 36 12 47516833 47516833 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004818 exon10 c.G1022A p.R341H . . . KCNA6 3742 broad.mit.edu 36 12 4790050 4790050 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002235 exon1 c.G582A p.E194E . . . FMNL3 91010 broad.mit.edu 36 12 48330798 48330798 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175736 exon17 c.G1928A p.R643H . . . FMNL3 91010 broad.mit.edu 36 12 48331336 48331336 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175736 exon16 c.G1679A p.R560Q . . . LIMA1 51474 broad.mit.edu 36 12 48928738 48928738 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001113546 exon2 c.G64T p.E22X . . . DIP2B 57609 broad.mit.edu 36 12 49408673 49408673 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173602 exon30 c.G3586A p.A1196T . . . ATF1 466 broad.mit.edu 36 12 49460260 49460260 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005171 exon2 c.G65A p.G22E . . . TMPRSS12 283471 broad.mit.edu 36 12 49523035 49523035 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182559 exon1 c.C21T p.S7S . . . SLC11A2 4891 broad.mit.edu 36 12 49675801 49675801 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174125 exon10 c.C955T p.R319X . . . SCN8A 6334 broad.mit.edu 36 12 50445969 50445969 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014191 exon16 c.G2792A p.R931Q . . . ANKRD33 341405 broad.mit.edu 36 12 50570727 50570727 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130015 exon5 c.C355T p.R119W . . . KRT82 3888 broad.mit.edu 36 12 51076974 51076974 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033033 exon6 c.T1028C p.I343T . . . KRT6A 3853 broad.mit.edu 36 12 51172783 51172783 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005554 exon1 c.G457A p.D153N . . . KRT5 3852 broad.mit.edu 36 12 51197774 51197774 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000424 exon5 c.A959G p.D320G . . . KRT72 140807 broad.mit.edu 36 12 51281177 51281177 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146226 exon1 c.G327A p.P109P . . . KRT2 3849 broad.mit.edu 36 12 51330490 51330490 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000423 exon2 c.G700A p.D234N . . . KRT3 3850 broad.mit.edu 36 12 51471284 51471284 + Missense_Mutation SNP C T T rs60410063 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057088 exon7 c.G1508A p.R503H . . . TENC1 23371 broad.mit.edu 36 12 51732519 51732519 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170754 exon3 c.G198A p.A66A . . . IGFBP6 3489 broad.mit.edu 36 12 51780875 51780875 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002178 exon2 c.G447A p.Q149Q . . . ITGB7 3695 broad.mit.edu 36 12 51880403 51880403 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000889 exon3 c.C92A p.A31D . . . RARG 5916 broad.mit.edu 36 12 51895365 51895365 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000966 exon5 c.G454A p.E152K . . . SP7 121340 broad.mit.edu 36 12 52008456 52008456 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152860 exon2 c.G1037A p.R346H . . . ATF7 11016 broad.mit.edu 36 12 52197367 52197367 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006856 exon12 c.G1273A p.A425T . . . HOXC5 3222 broad.mit.edu 36 12 52714337 52714337 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018953 exon2 c.G463A p.G155S . . . NCKAP1L 3071 broad.mit.edu 36 12 53206722 53206722 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184976 exon21 c.G2150A p.R717H . . . KIAA0748 9840 broad.mit.edu 36 12 53642526 53642526 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098815 exon9 c.C1423T p.R475W . . . KIAA0748 9840 broad.mit.edu 36 12 53642882 53642882 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098815 exon9 c.C1067T p.S356F . . . OR9K2 441639 broad.mit.edu 36 12 53809973 53809973 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005243 exon1 c.C154A p.L52I . . . OR6C76 390326 broad.mit.edu 36 12 54107140 54107140 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005183 exon1 c.C836T p.A279V . . . OR6C2 341416 broad.mit.edu 36 12 54132454 54132454 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054105 exon1 c.T190G p.F64V . . . OR6C2 341416 broad.mit.edu 36 12 54132564 54132564 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054105 exon1 c.C300A p.F100L . . . OR6C68 403284 broad.mit.edu 36 12 54172666 54172666 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005519 exon1 c.T253G p.L85V . . . ITGA7 3679 broad.mit.edu 36 12 54381192 54381192 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144997 exon4 c.G137A p.R46Q . . . CD63 967 broad.mit.edu 36 12 54406271 54406271 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001780 exon6 c.A468C p.K156N . . . RBMS2 5939 broad.mit.edu 36 12 55242548 55242548 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002898 exon2 c.A147C p.G49G . . . LRP1 4035 broad.mit.edu 36 12 55884462 55884462 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002332 exon71 c.C10954T p.R3652W . . . ANO2 57101 broad.mit.edu 36 12 5592362 5592362 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020373 exon19 c.A1952G p.Y651C . . . ARHGAP9 64333 broad.mit.edu 36 12 56154927 56154927 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080156 exon11 c.G1097T p.R366I . . . ARHGAP9 64333 broad.mit.edu 36 12 56158641 56158641 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032496 exon3 c.C483T p.S161S . . . DCTN2 10540 broad.mit.edu 36 12 56215877 56215877 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006400 exon3 c.A125C p.K42T . . . ARHGEF25 115557 broad.mit.edu 36 12 56295738 56295738 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111270 exon13 c.A1332C p.G444G . . . LRIG3 121227 broad.mit.edu 36 12 57566921 57566921 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153377 exon9 c.A1110C p.E370D . . . SLC16A7 9194 broad.mit.edu 36 12 58455278 58455278 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004731 exon4 c.G935A p.R312Q . . . SLC16A7 9194 broad.mit.edu 36 12 58459482 58459482 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004731 exon5 c.G1192A p.D398N . . . SLC16A7 9194 broad.mit.edu 36 12 58459629 58459629 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004731 exon5 c.G1339T p.E447X . . . MON2 23041 broad.mit.edu 36 12 61240745 61240745 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015026 exon26 c.G3617A p.S1206N . . . DPY19L2 283417 broad.mit.edu 36 12 62348267 62348267 + Silent SNP C T T rs34588711 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173812 exon1 c.G174A p.R58R . . . SRGAP1 57522 broad.mit.edu 36 12 62822534 62822534 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020762 exon22 c.C3073T p.R1025X . . . C12orf56 115749 broad.mit.edu 36 12 63033020 63033020 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170633 exon2 c.G336T p.L112F . . . XPOT 11260 broad.mit.edu 36 12 63101469 63101469 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007235 exon9 c.C1031A p.S344Y . . . XPOT 11260 broad.mit.edu 36 12 63105910 63105910 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007235 exon15 c.C1621T p.R541W . . . LTBR 4055 broad.mit.edu 36 12 6364530 6364530 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002342 exon3 c.G275A p.W92X . . . NCAPD2 9918 broad.mit.edu 36 12 6489533 6489533 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014865 exon4 c.G235T p.E79X . . . GRIP1 23426 broad.mit.edu 36 12 65057318 65057318 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178074 exon20 c.C2480T p.A827V . . . GRIP1 23426 broad.mit.edu 36 12 65125520 65125520 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178074 exon11 c.C1234T p.Q412X . . . NOP2 4839 broad.mit.edu 36 12 6543370 6543370 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006170 exon6 c.C466T p.L156L . . . CHD4 1108 broad.mit.edu 36 12 6562672 6562672 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001273 exon26 c.G4013T p.R1338I . . . ACRBP 84519 broad.mit.edu 36 12 6618391 6618391 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032489 exon9 c.G1499A p.R500H . . . COPS7A 50813 broad.mit.edu 36 12 6708836 6708836 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164093 exon4 c.C490T p.R164C . . . NUP107 57122 broad.mit.edu 36 12 67412782 67412782 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020401 exon23 c.C2097A p.F699L . . . SLC35E3 55508 broad.mit.edu 36 12 67428070 67428070 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018656 exon2 c.A496G p.T166A . . . CD4 920 broad.mit.edu 36 12 6793623 6793623 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000616 exon4 c.G269A p.G90E . . . FRS2 10818 broad.mit.edu 36 12 68254782 68254782 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042555 exon10 c.A1307G p.Y436C . . . CNOT2 4848 broad.mit.edu 36 12 69009484 69009484 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199303 exon5 c.C253T p.P85S . . . CNOT2 4848 broad.mit.edu 36 12 69010457 69010457 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199303 exon6 c.G510A p.S170S . . . PTPRB 5787 broad.mit.edu 36 12 69249816 69249816 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109754 exon14 c.G3540A p.T1180T . . . PTPRB 5787 broad.mit.edu 36 12 69251874 69251874 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109754 exon12 c.A3103G p.T1035A . . . PTPN6 5777 broad.mit.edu 36 12 6931432 6931432 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002831 exon3 c.C157T p.R53W . . . C1S 716 broad.mit.edu 36 12 7040082 7040082 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201442 exon3 c.G48A p.E16E . . . TPH2 121278 broad.mit.edu 36 12 70711681 70711681 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173353 exon11 c.G1412A p.R471H . . . C1R 715 broad.mit.edu 36 12 7133857 7133857 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001733 exon3 c.C360A p.F120L . . . CD163 9332 broad.mit.edu 36 12 7531255 7531255 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203416 exon8 c.C2017T p.P673S . . . CD163 9332 broad.mit.edu 36 12 7531414 7531414 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203416 exon8 c.C1858A p.L620I . . . ZDHHC17 23390 broad.mit.edu 36 12 75768798 75768798 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015336 exon17 c.C1801T p.R601X . . . E2F7 144455 broad.mit.edu 36 12 75951860 75951860 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203394 exon8 c.C1217T p.A406V . . . NAV3 89795 broad.mit.edu 36 12 76924447 76924447 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014903 exon8 c.G998A p.R333H . . . GDF3 9573 broad.mit.edu 36 12 7734542 7734542 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020634 exon2 c.T294G p.I98M . . . CLEC4C 170482 broad.mit.edu 36 12 7774744 7774744 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203503 exon5 c.C320A p.S107Y . . . PPFIA2 8499 broad.mit.edu 36 12 80257153 80257153 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003625 exon21 c.G2485T p.G829X . . . PPFIA2 8499 broad.mit.edu 36 12 80293816 80293816 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003625 exon10 c.A1021C p.T341P . . . CCDC59 29080 broad.mit.edu 36 12 81271133 81271133 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014167 exon4 c.G654T p.K218N . . . RASSF9 9182 broad.mit.edu 36 12 84722853 84722853 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005447 exon2 c.G1066T p.E356X . . . MGAT4C 25834 broad.mit.edu 36 12 84897893 84897893 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013244 exon7 c.T742C p.Y248H . . . CLEC4D 338339 broad.mit.edu 36 12 8562067 8562067 + Silent SNP A T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080387 exon3 c.A162T p.G54G . . . AICDA 57379 broad.mit.edu 36 12 8650829 8650829 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020661 exon2 c.C55T p.R19C . . . CEP290 80184 broad.mit.edu 36 12 86968312 86968312 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025114 exon53 c.G7159T p.D2387Y . . . CEP290 80184 broad.mit.edu 36 12 86995763 86995763 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025114 exon40 c.A5428C p.N1810H . . . CEP290 80184 broad.mit.edu 36 12 87011854 87011854 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025114 exon28 c.A3133C p.K1045Q . . . CEP290 80184 broad.mit.edu 36 12 87024706 87024706 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025114 exon25 c.G2694A p.R898R . . . CEP290 80184 broad.mit.edu 36 12 87036562 87036562 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025114 exon16 c.C1612A p.L538I . . . RIMKLB 57494 broad.mit.edu 36 12 8757857 8757857 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020734 exon3 c.C128T p.A43V . . . A2ML1 144568 broad.mit.edu 36 12 8880173 8880173 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144670 exon7 c.G699C p.Q233H . . . A2ML1 144568 broad.mit.edu 36 12 8895706 8895706 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144670 exon19 c.C2294T p.A765V . . . A2ML1 144568 broad.mit.edu 36 12 8895769 8895769 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144670 exon19 c.C2357T p.A786V . . . C12orf12 196477 broad.mit.edu 36 12 89872635 89872635 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152638 exon1 c.G16A p.D6N . . . A2M 2 broad.mit.edu 36 12 9138863 9138863 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000014 exon17 c.C2098G p.P700A . . . PZP 5858 broad.mit.edu 36 12 9197079 9197079 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002864 exon30 c.A3902T p.N1301I . . . PZP 5858 broad.mit.edu 36 12 9198617 9198617 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002864 exon29 c.G3636A p.V1212V . . . PZP 5858 broad.mit.edu 36 12 9209917 9209917 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002864 exon18 c.G2256T p.V752V . . . PLXNC1 10154 broad.mit.edu 36 12 93104326 93104326 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005761 exon4 c.C1385T p.S462L . . . PLXNC1 10154 broad.mit.edu 36 12 93165876 93165876 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005761 exon13 c.C2455T p.R819C . . . CCDC41 51134 broad.mit.edu 36 12 93251434 93251434 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016122 exon13 c.G1532A p.R511Q . . . CCDC41 51134 broad.mit.edu 36 12 93321121 93321121 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016122 exon5 c.G373T p.E125X . . . USP44 84101 broad.mit.edu 36 12 94446762 94446762 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042403 exon3 c.G1576T p.E526X . . . CCDC38 120935 broad.mit.edu 36 12 94799448 94799448 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182496 exon11 c.C936T p.F312F . . . AMDHD1 144193 broad.mit.edu 36 12 94870696 94870696 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152435 exon2 c.G208T p.E70X . . . AMDHD1 144193 broad.mit.edu 36 12 94878467 94878467 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152435 exon5 c.G748A p.G250R . . . NEDD1 121441 broad.mit.edu 36 12 95863715 95863715 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152905 exon14 c.C1768T p.R590C . . . APAF1 317 broad.mit.edu 36 12 97595352 97595352 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013229 exon13 c.G1779A p.T593T . . . ANKS1B 56899 broad.mit.edu 36 12 97716845 97716845 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181670 exon8 c.C1015T p.R339W . . . ANKS1B 56899 broad.mit.edu 36 12 98724512 98724512 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152788 exon4 c.G470T p.R157I . . . CLEC2B 9976 broad.mit.edu 36 12 9901439 9901439 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005127 exon3 c.C138T p.C46C . . . UHRF1BP1L 23074 broad.mit.edu 36 12 99015321 99015321 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006947 exon6 c.C622T p.R208X . . . SCYL2 55681 broad.mit.edu 36 12 99229077 99229077 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017988 exon5 c.C605A p.S202X . . . ANO4 121601 broad.mit.edu 36 12 99860326 99860326 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178826 exon4 c.G233A p.R78Q . . . CNTN1 1272 broad.mit.edu 36 12 39661119 39661119 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_175038 exon15 c.1913delG p.W638X . . . PLEKHA9 51054 broad.mit.edu 36 12 43854243 43854243 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . MIR196A2 406973 broad.mit.edu 36 12 52671859 52671859 + RNA SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . NALCN 259232 broad.mit.edu 36 13 100533173 100533173 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052867 exon33 c.C3753A p.I1251I . . . NALCN 259232 broad.mit.edu 36 13 100593441 100593441 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052867 exon17 c.C2109T p.I703I . . . NALCN 259232 broad.mit.edu 36 13 100642286 100642286 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052867 exon14 c.C1747A p.H583N . . . C13orf27 93081 broad.mit.edu 36 13 102217638 102217638 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138779 exon5 c.G490T p.E164X . . . ERCC5 2073 broad.mit.edu 36 13 102257855 102257855 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017693 exon3 c.G237A p.A79A . . . ERCC5 2073 broad.mit.edu 36 13 102266821 102266821 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017693 exon4 c.A521C p.K174T . . . LIG4 3981 broad.mit.edu 36 13 107659206 107659206 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002312 exon2 c.C2412A p.S804S . . . COL4A1 1282 broad.mit.edu 36 13 109625047 109625047 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001845 exon38 c.A3249C p.E1083D . . . COL4A1 1282 broad.mit.edu 36 13 109637608 109637608 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001845 exon25 c.G1606A p.D536N . . . COL4A1 1282 broad.mit.edu 36 13 109643184 109643184 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001845 exon23 c.G1459T p.E487X . . . C13orf28 122258 broad.mit.edu 36 13 112100413 112100413 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145248 exon3 c.C201T p.S67S . . . TUBA3C 7278 broad.mit.edu 36 13 18649395 18649395 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006001 exon4 c.G728A p.R243Q . . . TPTE2 93492 broad.mit.edu 36 13 18937660 18937660 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001141968 exon7 c.G224T p.R75I . . . ZMYM5 9205 broad.mit.edu 36 13 19297175 19297175 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142684 exon8 c.G1452T p.E484D . . . CRYL1 51084 broad.mit.edu 36 13 19876851 19876851 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015974 exon7 c.G769A p.E257K . . . XPO4 64328 broad.mit.edu 36 13 20327888 20327888 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022459 exon4 c.C334T p.R112W . . . SACS 26278 broad.mit.edu 36 13 22802719 22802719 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014363 exon10 c.C13296A p.F4432L . . . SACS 26278 broad.mit.edu 36 13 22807780 22807780 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014363 exon10 c.A8235C p.E2745D . . . PARP4 143 broad.mit.edu 36 13 23942090 23942090 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006437 exon16 c.A1988G p.D663G . . . PARP4 143 broad.mit.edu 36 13 23956855 23956855 + Missense_Mutation SNP G A A rs61742542 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006437 exon12 c.C1384T p.R462C . . . CENPJ 55835 broad.mit.edu 36 13 24356559 24356559 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018451 exon14 c.C3520T p.P1174S . . . CENPJ 55835 broad.mit.edu 36 13 24379043 24379043 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018451 exon7 c.G1133A p.R378Q . . . FAM123A 219287 broad.mit.edu 36 13 24641937 24641937 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152704 exon1 c.G1821T p.K607N . . . MTMR6 9107 broad.mit.edu 36 13 24733929 24733929 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004685 exon6 c.T603C p.C201C . . . NUPL1 9818 broad.mit.edu 36 13 24785024 24785024 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014089 exon4 c.C290T p.T97M . . . ATP8A2 51761 broad.mit.edu 36 13 24941168 24941168 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016529 exon2 c.G130A p.A44T . . . GSX1 219409 broad.mit.edu 36 13 27265983 27265983 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145657 exon2 c.C693T p.C231C . . . FLT3 2322 broad.mit.edu 36 13 27495607 27495607 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004119 exon19 c.T2298G p.I766M . . . PAN3 255967 broad.mit.edu 36 13 27739237 27739237 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175854 exon11 c.C1579T p.R527C . . . USPL1 10208 broad.mit.edu 36 13 30103223 30103223 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005800 exon4 c.G480A p.Q160Q . . . RXFP2 122042 broad.mit.edu 36 13 31264097 31264097 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166058 exon14 c.C1228A p.L410I . . . FRY 10129 broad.mit.edu 36 13 31726498 31726498 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023037 exon51 c.C7383T p.F2461F . . . PDS5B 23047 broad.mit.edu 36 13 32148060 32148060 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015032 exon9 c.C926A p.S309Y . . . NBEA 26960 broad.mit.edu 36 13 34628312 34628312 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015678 exon20 c.A2620C p.K874Q . . . NBEA 26960 broad.mit.edu 36 13 35027211 35027211 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015678 exon44 c.A6894G p.E2298E . . . ALG5 29880 broad.mit.edu 36 13 36467724 36467724 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142364 exon2 c.G76A p.V26I . . . POSTN 10631 broad.mit.edu 36 13 37052783 37052783 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135934 exon11 c.A1444C p.N482H . . . TRPC4 7223 broad.mit.edu 36 13 37218332 37218332 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135957 exon3 c.C639T p.S213S . . . TRPC4 7223 broad.mit.edu 36 13 37255251 37255251 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135957 exon2 c.C220T p.L74F . . . FREM2 341640 broad.mit.edu 36 13 38163013 38163013 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207361 exon1 c.T3532C p.F1178L . . . ELF1 1997 broad.mit.edu 36 13 40431125 40431125 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172373 exon3 c.G100A p.V34I . . . KBTBD6 89890 broad.mit.edu 36 13 40603852 40603852 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152903 exon1 c.C796T p.R266C . . . NAA16 79612 broad.mit.edu 36 13 40841328 40841328 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024561 exon15 c.G1856A p.R619H . . . KIAA0564 23078 broad.mit.edu 36 13 41161620 41161620 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015058 exon34 c.A4001C p.K1334T . . . KIAA0564 23078 broad.mit.edu 36 13 41283433 41283433 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015058 exon17 c.G1991A p.R664Q . . . AKAP11 11215 broad.mit.edu 36 13 41775281 41775281 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016248 exon8 c.A4399C p.K1467Q . . . ENOX1 55068 broad.mit.edu 36 13 42794530 42794530 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127615 exon11 c.C1251T p.V417V . . . ENOX1 55068 broad.mit.edu 36 13 42833431 42833431 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127615 exon6 c.T366G p.L122L . . . SLC25A30 253512 broad.mit.edu 36 13 44868148 44868148 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010875 exon10 c.C837A p.F279L . . . ZC3H13 23091 broad.mit.edu 36 13 45461176 45461176 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015070 exon9 c.T1002G p.S334S . . . C13orf18 80183 broad.mit.edu 36 13 45816918 45816918 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025113 exon14 c.T1835C p.V612A . . . C13orf18 80183 broad.mit.edu 36 13 45840291 45840291 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025113 exon5 c.G713T p.S238I . . . HTR2A 3356 broad.mit.edu 36 13 46364614 46364614 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165947 exon2 c.C273T p.V91V . . . NUDT15 55270 broad.mit.edu 36 13 47513146 47513146 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018283 exon2 c.C248A p.S83Y . . . RB1 5925 broad.mit.edu 36 13 47835019 47835019 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000321 exon8 c.G786A p.R262R . . . KPNA3 3839 broad.mit.edu 36 13 49178285 49178285 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002267 exon14 c.G1159T p.E387X . . . TRIM13 10206 broad.mit.edu 36 13 49485064 49485064 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005798 exon3 c.C987T p.V329V . . . KCNRG 283518 broad.mit.edu 36 13 49492585 49492585 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173605 exon2 c.G813T p.K271N . . . INTS6 26512 broad.mit.edu 36 13 50850512 50850512 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012141 exon12 c.G1466A p.R489Q . . . ATP7B 540 broad.mit.edu 36 13 51407102 51407102 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000053 exon21 c.G4189A p.A1397T . . . UTP14C 9724 broad.mit.edu 36 13 51500542 51500542 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004127 exon4 c.G1294C p.G432R . . . UTP14C 9724 broad.mit.edu 36 13 51502117 51502117 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021645 exon2 c.G1176A p.E392E . . . NEK3 4752 broad.mit.edu 36 13 51626308 51626308 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146099 exon3 c.C119A p.S40Y . . . VPS36 51028 broad.mit.edu 36 13 51895721 51895721 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016075 exon10 c.C829T p.R277X . . . SUGT1 10910 broad.mit.edu 36 13 52130569 52130569 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130912 exon4 c.C222A p.L74L . . . OLFM4 10562 broad.mit.edu 36 13 52514084 52514084 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006418 exon3 c.G396T p.K132N . . . PCDH17 27253 broad.mit.edu 36 13 57105547 57105547 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040429 exon1 c.G866A p.R289H . . . DIAPH3 81624 broad.mit.edu 36 13 59463311 59463311 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030932 exon6 c.G554A p.R185Q . . . DIAPH3 81624 broad.mit.edu 36 13 59488271 59488271 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042517 exon6 c.A636C p.E212D . . . TDRD3 81550 broad.mit.edu 36 13 60000912 60000912 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146071 exon11 c.G1273T p.E425X . . . TDRD3 81550 broad.mit.edu 36 13 60001096 60001096 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146071 exon11 c.G1457A p.R486Q . . . PCDH9 5101 broad.mit.edu 36 13 66699794 66699794 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020403 exon2 c.T780C p.H260H . . . DIS3 22894 broad.mit.edu 36 13 72248084 72248084 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128226 exon5 c.G712A p.D238N . . . TBC1D4 9882 broad.mit.edu 36 13 74784941 74784941 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014832 exon13 c.C2317T p.R773W . . . TBC1D4 9882 broad.mit.edu 36 13 74798510 74798510 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014832 exon10 c.G1857A p.P619P . . . TBC1D4 9882 broad.mit.edu 36 13 74809172 74809172 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014832 exon8 c.T1617G p.I539M . . . FBXL3 26224 broad.mit.edu 36 13 76487591 76487591 + Silent SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012158 exon4 c.A597C p.T199T . . . MYCBP2 23077 broad.mit.edu 36 13 76628271 76628271 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015057 exon46 c.C6838T p.R2280C . . . MYCBP2 23077 broad.mit.edu 36 13 76678957 76678957 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015057 exon24 c.C3421T p.R1141X . . . MYCBP2 23077 broad.mit.edu 36 13 76715969 76715969 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015057 exon16 c.G2500T p.E834X . . . SLITRK6 84189 broad.mit.edu 36 13 85266180 85266180 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032229 exon2 c.A2465C p.E822A . . . DCT 1638 broad.mit.edu 36 13 93893789 93893789 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001922 exon7 c.G1283A p.R428Q . . . DCT 1638 broad.mit.edu 36 13 93919133 93919133 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001922 exon2 c.G463A p.D155N . . . ABCC4 10257 broad.mit.edu 36 13 94471845 94471845 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005845 exon31 c.C3963T p.F1321F . . . ABCC4 10257 broad.mit.edu 36 13 94656797 94656797 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105515 exon8 c.G1151A p.R384Q . . . DZIP1 22873 broad.mit.edu 36 13 95032560 95032560 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014934 exon22 c.G2476T p.E826X . . . DZIP1 22873 broad.mit.edu 36 13 95040541 95040541 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014934 exon16 c.C1779T p.L593L . . . UGGT2 55757 broad.mit.edu 36 13 95463657 95463657 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020121 exon5 c.G565A p.E189K . . . UGGT2 55757 broad.mit.edu 36 13 95473375 95473375 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020121 exon4 c.T405C p.C135C . . . HS6ST3 266722 broad.mit.edu 36 13 96283256 96283256 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153456 exon2 c.C1219A p.L407I . . . OXGR1 27199 broad.mit.edu 36 13 96437026 96437026 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_080818 exon4 c.A989C p.K330T . . . RAP2A 5911 broad.mit.edu 36 13 96914608 96914608 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021033 exon2 c.G463A p.E155K . . . STK24 8428 broad.mit.edu 36 13 97914019 97914019 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003576 exon7 c.G892A p.E298K . . . SLC15A1 6564 broad.mit.edu 36 13 98172150 98172150 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005073 exon6 c.C374A p.S125Y . . . GPR183 1880 broad.mit.edu 36 13 98745430 98745430 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004951 exon2 c.A971C p.K324T . . . UBAC2 337867 broad.mit.edu 36 13 98835485 98835485 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144072 exon9 c.C930T p.V310V . . . PCCA 5095 broad.mit.edu 36 13 99753221 99753221 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178004 exon14 c.T1252C p.S418P . . . PPP2R5C 5527 broad.mit.edu 36 14 101429176 101429176 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178587 exon7 c.C776A p.S259Y . . . TECPR2 9895 broad.mit.edu 36 14 101970539 101970539 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014844 exon9 c.C1632T p.P544P . . . POTEG 404785 broad.mit.edu 36 14 18644195 18644195 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005356 exon9 c.G1252T p.E418X . . . OR4K2 390431 broad.mit.edu 36 14 19414448 19414448 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005501 exon1 c.T182G p.F61C . . . OR4K2 390431 broad.mit.edu 36 14 19415081 19415081 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005501 exon1 c.C815A p.S272Y . . . OR4K1 79544 broad.mit.edu 36 14 19473865 19473865 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004063 exon1 c.C200A p.S67Y . . . OR4K17 390436 broad.mit.edu 36 14 19656146 19656146 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004715 exon1 c.C741T p.I247I . . . OR11G2 390439 broad.mit.edu 36 14 19736111 19736111 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005503 exon1 c.C777T p.V259V . . . CCNB1IP1 57820 broad.mit.edu 36 14 19851668 19851668 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182849 exon5 c.A430G p.T144A . . . ANG 283 broad.mit.edu 36 14 20231919 20231919 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001097577 exon2 c.G356A p.R119Q . . . METT11D1 64745 broad.mit.edu 36 14 20534634 20534634 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022734 exon13 c.C1189T p.R397C . . . RPGRIP1 57096 broad.mit.edu 36 14 20840538 20840538 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020366 exon4 c.C542T p.A181V . . . CHD8 57680 broad.mit.edu 36 14 20937627 20937627 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020920 exon26 c.C4058T p.S1353L . . . TOX4 9878 broad.mit.edu 36 14 21030669 21030669 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014828 exon7 c.G1054A p.A352T . . . OXA1L 5018 broad.mit.edu 36 14 22309617 22309617 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005015 exon6 c.C957A p.S319S . . . SLC7A7 9056 broad.mit.edu 36 14 22312718 22312718 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126106 exon11 c.G1477T p.E493X . . . MYH6 4624 broad.mit.edu 36 14 22925408 22925408 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002471 exon33 c.G4915A p.A1639T . . . MYH7 4625 broad.mit.edu 36 14 22969999 22969999 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000257 exon10 c.T846A p.D282E . . . GMPR2 51292 broad.mit.edu 36 14 23777637 23777637 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016576 exon9 c.C914T p.A305V . . . ADCY4 196883 broad.mit.edu 36 14 23857508 23857508 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198592 exon26 c.A3188G p.N1063S . . . NFATC4 4776 broad.mit.edu 36 14 23914731 23914731 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136022 exon8 c.G2088A p.E696E . . . PRKD1 5587 broad.mit.edu 36 14 29116411 29116411 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002742 exon18 c.C2523A p.D841E . . . HECTD1 25831 broad.mit.edu 36 14 30667653 30667653 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015382 exon25 c.A4675C p.N1559H . . . AKAP6 9472 broad.mit.edu 36 14 32361800 32361800 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004274 exon13 c.C5030T p.A1677V . . . RALGAPA1 253959 broad.mit.edu 36 14 35287601 35287601 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194301 exon10 c.C1192T p.R398C . . . TRAPPC6B 122553 broad.mit.edu 36 14 38690736 38690736 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177452 exon4 c.G326T p.S109I . . . FAM179B 23116 broad.mit.edu 36 14 44502479 44502479 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015091 exon1 c.A1105G p.T369A . . . MDGA2 161357 broad.mit.edu 36 14 46459091 46459091 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182830 exon10 c.C1218A p.F406L . . . C14orf104 55172 broad.mit.edu 36 14 49169819 49169819 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083908 exon1 c.A1799C p.K600T . . . CDKL1 8814 broad.mit.edu 36 14 49868831 49868831 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004196 exon8 c.A868C p.N290H . . . TRIM9 114088 broad.mit.edu 36 14 50515899 50515899 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015163 exon9 c.G2026T p.E676X . . . FERMT2 10979 broad.mit.edu 36 14 52394907 52394907 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134999 exon16 c.A2002C p.K668Q . . . WDHD1 11169 broad.mit.edu 36 14 54546924 54546924 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007086 exon4 c.G194T p.G65V . . . DLGAP5 9787 broad.mit.edu 36 14 54695039 54695039 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146015 exon14 c.C1827T p.F609F . . . TBPL2 387332 broad.mit.edu 36 14 54960705 54960705 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199047 exon6 c.C976T p.P326S . . . OTX2 5015 broad.mit.edu 36 14 56338795 56338795 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021728 exon5 c.G305A p.R102H . . . OTX2 5015 broad.mit.edu 36 14 56340706 56340706 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021728 exon4 c.C226T p.R76X . . . MUDENG 55745 broad.mit.edu 36 14 56810844 56810844 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018229 exon2 c.C204T p.F68F . . . PSMA3 5684 broad.mit.edu 36 14 57788699 57788699 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002788 exon3 c.C214T p.R72W . . . ARID4A 5926 broad.mit.edu 36 14 57855247 57855247 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023000 exon7 c.G420A p.T140T . . . KIAA0586 9786 broad.mit.edu 36 14 57994423 57994423 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014749 exon11 c.C1556T p.S519L . . . DACT1 51339 broad.mit.edu 36 14 58181852 58181852 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079520 exon4 c.A647C p.K216T . . . DACT1 51339 broad.mit.edu 36 14 58182105 58182105 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079520 exon4 c.A900C p.K300N . . . RTN1 6252 broad.mit.edu 36 14 59282219 59282219 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021136 exon2 c.C975T p.D325D . . . RTN1 6252 broad.mit.edu 36 14 59282801 59282801 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021136 exon2 c.T393G p.N131K . . . SIX4 51804 broad.mit.edu 36 14 60250057 60250057 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017420 exon3 c.G2167A p.E723K . . . SLC38A6 145389 broad.mit.edu 36 14 60566948 60566948 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153811 exon6 c.G436A p.E146K . . . PRKCH 5583 broad.mit.edu 36 14 61084239 61084239 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006255 exon13 c.G1787A p.R596H . . . SYT16 83851 broad.mit.edu 36 14 61636973 61636973 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031914 exon6 c.T1733C p.V578A . . . SYNE2 23224 broad.mit.edu 36 14 63589826 63589826 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015180 exon48 c.G9442A p.E3148K . . . SYNE2 23224 broad.mit.edu 36 14 63666581 63666581 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015180 exon76 c.C14202T p.F4734F . . . ESR2 2100 broad.mit.edu 36 14 63805366 63805366 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001437 exon4 c.T552G p.I184M . . . RAB15 376267 broad.mit.edu 36 14 64486824 64486824 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198686 exon5 c.G517A p.G173S . . . MPP5 64398 broad.mit.edu 36 14 66815795 66815795 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022474 exon3 c.G155A p.R52Q . . . VTI1B 10490 broad.mit.edu 36 14 67187866 67187866 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006370 exon6 c.C688T p.R230C . . . ZFYVE26 23503 broad.mit.edu 36 14 67321652 67321652 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015346 exon19 c.C3400A p.L1134I . . . SLC10A1 6554 broad.mit.edu 36 14 69312817 69312817 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003049 exon5 c.A985G p.T329A . . . COX16 51241 broad.mit.edu 36 14 69865669 69865669 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016468 exon3 c.A179C p.K60T . . . ADAM21 8747 broad.mit.edu 36 14 69995178 69995178 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003813 exon1 c.C1209T p.I403I . . . PCNX 22990 broad.mit.edu 36 14 70610140 70610140 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014982 exon27 c.C4978T p.R1660X . . . RGS6 9628 broad.mit.edu 36 14 72054881 72054881 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004296 exon15 c.C1161A p.I387I . . . RBM25 58517 broad.mit.edu 36 14 72656199 72656199 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021239 exon19 c.T2465G p.F822C . . . YLPM1 56252 broad.mit.edu 36 14 74314981 74314981 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019589 exon2 c.A952C p.K318Q . . . PROX2 283571 broad.mit.edu 36 14 74400215 74400215 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080408 exon1 c.G76A p.E26K . . . MLH3 27030 broad.mit.edu 36 14 74583647 74583647 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040108 exon2 c.G2465A p.S822N . . . NEK9 91754 broad.mit.edu 36 14 74637479 74637479 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033116 exon16 c.C1971T p.C657C . . . C14orf118 55668 broad.mit.edu 36 14 75714087 75714087 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017926 exon7 c.G1056T p.K352N . . . TMEM63C 57156 broad.mit.edu 36 14 76779023 76779023 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020431 exon15 c.C1212A p.F404L . . . TMED8 283578 broad.mit.edu 36 14 76879403 76879403 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213601 exon5 c.G631A p.D211N . . . C14orf178 283579 broad.mit.edu 36 14 77305649 77305649 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174943 exon3 c.G244T p.D82Y . . . NRXN3 9369 broad.mit.edu 36 14 78187339 78187339 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004796 exon3 c.T19G p.F7V . . . C14orf145 145508 broad.mit.edu 36 14 80297700 80297700 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152446 exon16 c.T2387C p.I796T . . . C14orf145 145508 broad.mit.edu 36 14 80372429 80372429 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152446 exon11 c.A930G p.E310E . . . GTF2A1 2957 broad.mit.edu 36 14 80737696 80737696 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015859 exon4 c.A397C p.N133H . . . STON2 85439 broad.mit.edu 36 14 80814302 80814302 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033104 exon4 c.T1106G p.F369C . . . FLRT2 23768 broad.mit.edu 36 14 85158657 85158657 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013231 exon2 c.C1046T p.A349V . . . ZC3H14 79882 broad.mit.edu 36 14 88131022 88131022 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207662 exon1 c.C199A p.L67I . . . EML5 161436 broad.mit.edu 36 14 88262748 88262748 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183387 exon8 c.A1077C p.L359F . . . TDP1 55775 broad.mit.edu 36 14 89520639 89520639 + Missense_Mutation SNP G A A rs34452707 byCluster;byFrequency;by1000genomes TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008744 exon8 c.G911A p.R304Q . . . KCNK13 56659 broad.mit.edu 36 14 89720257 89720257 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022054 exon2 c.C384T p.I128I . . . CATSPERB 79820 broad.mit.edu 36 14 91196057 91196057 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024764 exon15 c.G1309A p.G437S . . . TRIP11 9321 broad.mit.edu 36 14 91541759 91541759 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004239 exon11 c.G2314T p.D772Y . . . TRIP11 9321 broad.mit.edu 36 14 91550515 91550515 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004239 exon7 c.A983G p.D328G . . . SLC24A4 123041 broad.mit.edu 36 14 91978817 91978817 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153646 exon6 c.C486T p.F162F . . . RIN3 79890 broad.mit.edu 36 14 92195355 92195355 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024832 exon7 c.C2123T p.S708L . . . BTBD7 55727 broad.mit.edu 36 14 92799948 92799948 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002860 exon4 c.C1307T p.S436L . . . BTBD7 55727 broad.mit.edu 36 14 92824738 92824738 + Nonstop_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018167 exon4 c.T1231C p.X411Q . . . KIAA1409 57578 broad.mit.edu 36 14 93153325 93153325 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020818 exon28 c.G3615A p.P1205P . . . PPP4R4 57718 broad.mit.edu 36 14 93744645 93744645 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020958 exon3 c.C283T p.P95S . . . PPP4R4 57718 broad.mit.edu 36 14 93787880 93787880 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058237 exon16 c.T1759G p.L587V . . . DICER1 23405 broad.mit.edu 36 14 94639585 94639585 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195573 exon20 c.T3901A p.L1301M . . . DICER1 23405 broad.mit.edu 36 14 94647434 94647434 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195573 exon13 c.G2229A p.T743T . . . ATG2B 55102 broad.mit.edu 36 14 95849207 95849207 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018036 exon25 c.A3790G p.T1264A . . . ATG2B 55102 broad.mit.edu 36 14 95852711 95852711 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018036 exon21 c.T3273C p.G1091G . . . VRK1 7443 broad.mit.edu 36 14 96391401 96391401 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003384 exon8 c.G664A p.D222N . . . EML1 2009 broad.mit.edu 36 14 99456898 99456898 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008707 exon18 c.G1897A p.E633K . . . MIR376A1 494325 broad.mit.edu 36 14 100576885 100576885 + RNA SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . TUBGCP5 114791 broad.mit.edu 36 15 20393527 20393527 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052903 exon6 c.G525A p.Q175Q . . . TUBGCP5 114791 broad.mit.edu 36 15 20400401 20400401 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052903 exon10 c.G1007A p.G336E . . . UBE3A 7337 broad.mit.edu 36 15 23167670 23167670 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130839 exon6 c.A744C p.K248N . . . ATP10A 57194 broad.mit.edu 36 15 23577304 23577304 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024490 exon2 c.G609A p.E203E . . . GABRG3 2567 broad.mit.edu 36 15 25399460 25399460 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033223 exon6 c.C644A p.S215X . . . OCA2 4948 broad.mit.edu 36 15 25790625 25790625 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000275 exon20 c.A2118G p.E706E . . . HERC2 8924 broad.mit.edu 36 15 26198884 26198884 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004667 exon5 c.G467T p.R156I . . . CHRFAM7A 89832 broad.mit.edu 36 15 28447012 28447012 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139320 exon9 c.C621T p.F207F . . . TRPM1 4308 broad.mit.edu 36 15 29081693 29081693 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002420 exon27 c.G4436A p.R1479H . . . TRPM1 4308 broad.mit.edu 36 15 29082288 29082288 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002420 exon27 c.G3841T p.E1281X . . . TRPM1 4308 broad.mit.edu 36 15 29117235 29117235 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002420 exon19 c.G2476A p.A826T . . . TRPM1 4308 broad.mit.edu 36 15 29128954 29128954 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002420 exon12 c.C1422T p.V474V . . . TRPM1 4308 broad.mit.edu 36 15 29142079 29142079 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002420 exon8 c.G1018T p.E340X . . . ARHGAP11A 9824 broad.mit.edu 36 15 30715342 30715342 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199357 exon11 c.C1417T p.R473X . . . FMN1 342184 broad.mit.edu 36 15 30878429 30878429 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103184 exon15 c.G3329A p.R1110Q . . . RYR3 6263 broad.mit.edu 36 15 31703418 31703418 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon20 c.G2476T p.E826X . . . RYR3 6263 broad.mit.edu 36 15 31851535 31851535 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon63 c.G8939A p.R2980Q . . . RYR3 6263 broad.mit.edu 36 15 31923038 31923038 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon92 c.G13267A p.A4423T . . . RYR3 6263 broad.mit.edu 36 15 31933069 31933069 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon96 c.C13693A p.L4565I . . . C15orf24 56851 broad.mit.edu 36 15 32163860 32163860 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020154 exon5 c.A696C p.K232N . . . AQR 9716 broad.mit.edu 36 15 33023804 33023804 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014691 exon6 c.C448A p.L150I . . . RASGRP1 10125 broad.mit.edu 36 15 36578380 36578380 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005739 exon15 c.C1780T p.R594X . . . BUB1B 701 broad.mit.edu 36 15 38300087 38300087 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001211 exon23 c.C2988A p.F996L . . . CASC5 57082 broad.mit.edu 36 15 38694853 38694853 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170589 exon9 c.T385C p.Y129H . . . RAD51 5888 broad.mit.edu 36 15 38810629 38810629 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002875 exon10 c.C981T p.F327F . . . EXD1 161829 broad.mit.edu 36 15 39263599 39263599 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152596 exon10 c.A1367C p.K456T . . . MGA 23269 broad.mit.edu 36 15 39808715 39808715 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164273 exon11 c.G3719A p.R1240Q . . . MGA 23269 broad.mit.edu 36 15 39815940 39815940 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164273 exon13 c.A4186G p.K1396E . . . MAPKBP1 23005 broad.mit.edu 36 15 39894191 39894191 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014994 exon10 c.T1132G p.S378A . . . EHD4 30844 broad.mit.edu 36 15 39989225 39989225 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139265 exon5 c.T1053G p.I351M . . . VPS39 23339 broad.mit.edu 36 15 40241573 40241573 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015289 exon23 c.G2409T p.K803N . . . TTBK2 146057 broad.mit.edu 36 15 40856653 40856653 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173500 exon12 c.T1277C p.V426A . . . TMEM62 80021 broad.mit.edu 36 15 41263937 41263937 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024956 exon14 c.G1793A p.G598D . . . TGM5 9333 broad.mit.edu 36 15 41318336 41318336 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004245 exon8 c.A1070G p.D357G . . . TUBGCP4 27229 broad.mit.edu 36 15 41455683 41455683 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014444 exon2 c.C174A p.F58L . . . PDIA3 2923 broad.mit.edu 36 15 41845050 41845050 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005313 exon6 c.A713G p.E238G . . . WDR76 79968 broad.mit.edu 36 15 41919142 41919142 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167941 exon5 c.G464A p.R155Q . . . SPG11 80208 broad.mit.edu 36 15 42652197 42652197 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025137 exon33 c.G6319A p.V2107I . . . C15orf43 145645 broad.mit.edu 36 15 43037906 43037906 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152448 exon3 c.T190G p.F64V . . . SHF 90525 broad.mit.edu 36 15 43251464 43251464 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138356 exon7 c.G994A p.D332N . . . SQRDL 58472 broad.mit.edu 36 15 43770492 43770492 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021199 exon10 c.G1325A p.R442H . . . SLC24A5 283652 broad.mit.edu 36 15 46201383 46201383 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_205850 exon2 c.G159A p.E53E . . . MYEF2 50804 broad.mit.edu 36 15 46245493 46245493 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016132 exon5 c.G454T p.E152X . . . FBN1 2200 broad.mit.edu 36 15 46490769 46490769 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000138 exon66 c.C8326T p.R2776X . . . FBN1 2200 broad.mit.edu 36 15 46514101 46514101 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000138 exon54 c.C6598T p.P2200S . . . FBN1 2200 broad.mit.edu 36 15 46617197 46617197 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000138 exon7 c.C639T p.V213V . . . SECISBP2L 9728 broad.mit.edu 36 15 47096380 47096380 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014701 exon9 c.C1241A p.A414D . . . SECISBP2L 9728 broad.mit.edu 36 15 47108154 47108154 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014701 exon5 c.G682A p.A228T . . . ATP8B4 79895 broad.mit.edu 36 15 47955909 47955909 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024837 exon25 c.G2885A p.G962E . . . ATP8B4 79895 broad.mit.edu 36 15 48126933 48126933 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024837 exon4 c.G108A p.S36S . . . SLC27A2 11001 broad.mit.edu 36 15 48262279 48262279 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159629 exon1 c.G363A p.W121X . . . TRPM7 54822 broad.mit.edu 36 15 48672053 48672053 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017672 exon26 c.C3671A p.S1224X . . . TRPM7 54822 broad.mit.edu 36 15 48689122 48689122 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017672 exon19 c.G2528A p.R843Q . . . GLDN 342035 broad.mit.edu 36 15 49483953 49483953 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181789 exon10 c.A1366G p.T456A . . . DMXL2 23312 broad.mit.edu 36 15 49579390 49579390 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015263 exon18 c.A3323C p.E1108A . . . SCG3 29106 broad.mit.edu 36 15 49798924 49798924 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013243 exon12 c.T1316C p.F439S . . . MYO5C 55930 broad.mit.edu 36 15 50355136 50355136 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018728 exon5 c.C521T p.A174V . . . MYO5A 4644 broad.mit.edu 36 15 50446545 50446545 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000259 exon23 c.C3135T p.I1045I . . . MYO5A 4644 broad.mit.edu 36 15 50455888 50455888 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000259 exon19 c.C2368T p.R790W . . . WDR72 256764 broad.mit.edu 36 15 51695111 51695111 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182758 exon15 c.T2584G p.L862V . . . UNC13C 440279 broad.mit.edu 36 15 52092937 52092937 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080534 exon1 c.G545A p.R182Q . . . UNC13C 440279 broad.mit.edu 36 15 52706553 52706553 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080534 exon31 c.G6595T p.E2199X . . . RFX7 64864 broad.mit.edu 36 15 54322626 54322626 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022841 exon1 c.G150T p.K50N . . . MNS1 55329 broad.mit.edu 36 15 54526409 54526409 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018365 exon4 c.G378T p.K126N . . . TCF12 6938 broad.mit.edu 36 15 55331917 55331917 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207037 exon15 c.C1195T p.R399X . . . GCOM1 145781 broad.mit.edu 36 15 55741002 55741002 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018100 exon11 c.G1182T p.K394N . . . LDHAL6B 92483 broad.mit.edu 36 15 57287350 57287350 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033195 exon1 c.G919A p.D307N . . . VPS13C 54832 broad.mit.edu 36 15 60060871 60060871 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017684 exon20 c.A1999C p.K667Q . . . TLN2 83660 broad.mit.edu 36 15 60850474 60850474 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015059 exon39 c.A5216C p.Y1739S . . . TPM1 7168 broad.mit.edu 36 15 61140172 61140172 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018007 exon5 c.C544T p.R182W . . . USP3 9960 broad.mit.edu 36 15 61669980 61669980 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006537 exon15 c.A1465G p.T489A . . . HERC1 8925 broad.mit.edu 36 15 61731724 61731724 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003922 exon52 c.G10360A p.V3454I . . . HERC1 8925 broad.mit.edu 36 15 61733409 61733409 + Nonsense_Mutation SNP T A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003922 exon51 c.A10252T p.K3418X . . . PPIB 5479 broad.mit.edu 36 15 62235332 62235332 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000942 exon5 c.C594A p.I198I . . . RBPMS2 348093 broad.mit.edu 36 15 62828384 62828384 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194272 exon5 c.G286A p.E96K . . . CILP 8483 broad.mit.edu 36 15 63276187 63276187 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003613 exon9 c.C3490T p.R1164C . . . DPP8 54878 broad.mit.edu 36 15 63546193 63546193 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017743 exon14 c.C1701A p.F567L . . . DENND4A 10260 broad.mit.edu 36 15 63749414 63749414 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144823 exon26 c.G4628A p.R1543Q . . . DENND4A 10260 broad.mit.edu 36 15 63812181 63812181 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144823 exon8 c.C1070A p.P357H . . . DIS3L 115752 broad.mit.edu 36 15 64386233 64386233 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143688 exon3 c.G311A p.R104Q . . . DIS3L 115752 broad.mit.edu 36 15 64405547 64405547 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143688 exon12 c.G1992T p.K664N . . . ZWILCH 55055 broad.mit.edu 36 15 64600036 64600036 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017975 exon6 c.G575T p.R192I . . . SMAD3 4088 broad.mit.edu 36 15 65244384 65244384 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145103 exon2 c.G172A p.E58K . . . SMAD3 4088 broad.mit.edu 36 15 65264221 65264221 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145103 exon7 c.G842A p.G281D . . . IQCH 64799 broad.mit.edu 36 15 65423458 65423458 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031715 exon6 c.T512G p.I171S . . . IQCH 64799 broad.mit.edu 36 15 65452781 65452781 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031715 exon10 c.G1328A p.R443H . . . MAP2K5 5607 broad.mit.edu 36 15 65642696 65642696 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145160 exon3 c.G206A p.R69Q . . . NOX5 79400 broad.mit.edu 36 15 67136060 67136060 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184779 exon16 c.C2184T p.F728F . . . GLCE 26035 broad.mit.edu 36 15 67335741 67335741 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015554 exon3 c.A542G p.N181S . . . UACA 55075 broad.mit.edu 36 15 68748069 68748069 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018003 exon16 c.G2008A p.E670K . . . UACA 55075 broad.mit.edu 36 15 68763750 68763750 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018003 exon8 c.C692T p.A231V . . . LRRC49 54839 broad.mit.edu 36 15 69128948 69128948 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017691 exon16 c.T2004G p.I668M . . . MYO9A 4649 broad.mit.edu 36 15 69909691 69909691 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006901 exon40 c.C6853T p.R2285C . . . MYO9A 4649 broad.mit.edu 36 15 69931652 69931652 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006901 exon36 c.C6350T p.A2117V . . . MYO9A 4649 broad.mit.edu 36 15 69933900 69933900 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006901 exon35 c.G6218A p.R2073Q . . . MYO9A 4649 broad.mit.edu 36 15 70125459 70125459 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006901 exon2 c.G500A p.R167Q . . . C15orf60 283677 broad.mit.edu 36 15 71553244 71553244 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042367 exon2 c.G178T p.E60X . . . PML 5371 broad.mit.edu 36 15 72114855 72114855 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033250 exon7 c.G1856A p.R619H . . . ISLR2 57611 broad.mit.edu 36 15 72212368 72212368 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020851 exon3 c.G220A p.V74I . . . CSK 1445 broad.mit.edu 36 15 72880443 72880443 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004383 exon9 c.G760A p.V254M . . . CPLX3 594855 broad.mit.edu 36 15 72909559 72909559 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001030005 exon3 c.T288C p.G96G . . . SIN3A 25942 broad.mit.edu 36 15 73486485 73486485 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145358 exon9 c.A1371G p.K457K . . . TBC1D2B 23102 broad.mit.edu 36 15 76103669 76103669 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144572 exon6 c.G1354A p.E452K . . . RASGRF1 5923 broad.mit.edu 36 15 77111604 77111604 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002891 exon7 c.C1068T p.F356F . . . TMED3 23423 broad.mit.edu 36 15 77401518 77401518 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007364 exon3 c.G561A p.T187T . . . ARNT2 9915 broad.mit.edu 36 15 78632097 78632097 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014862 exon10 c.C1016T p.S339F . . . TMC3 342125 broad.mit.edu 36 15 79424238 79424238 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080532 exon13 c.C1442A p.P481H . . . CPEB1 64506 broad.mit.edu 36 15 81021818 81021818 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079535 exon3 c.C491A p.A164D . . . AP3B2 8120 broad.mit.edu 36 15 81125474 81125474 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004644 exon26 c.A3141G p.X1047W . . . FSD2 123722 broad.mit.edu 36 15 81253102 81253102 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007122 exon2 c.G95A p.R32K . . . BNC1 646 broad.mit.edu 36 15 81717837 81717837 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001717 exon5 c.A2346C p.E782D . . . SH3GL3 6457 broad.mit.edu 36 15 82036414 82036414 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003027 exon6 c.G541A p.E181K . . . ADAMTSL3 57188 broad.mit.edu 36 15 82330709 82330709 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207517 exon9 c.C954A p.I318I . . . ADAMTSL3 57188 broad.mit.edu 36 15 82373097 82373097 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_207517 exon16 c.C1950T p.Y650Y . . . ADAMTSL3 57188 broad.mit.edu 36 15 82485013 82485013 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207517 exon27 c.T4477G p.S1493A . . . ZSCAN2 54993 broad.mit.edu 36 15 82964840 82964840 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181877 exon3 c.T410G p.F137C . . . ZSCAN2 54993 broad.mit.edu 36 15 82966247 82966247 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181877 exon3 c.G1817T p.R606I . . . ZNF592 9640 broad.mit.edu 36 15 83127518 83127518 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014630 exon4 c.A608C p.K203T . . . ALPK3 57538 broad.mit.edu 36 15 83208871 83208871 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020778 exon12 c.A5300C p.N1767T . . . PDE8A 5151 broad.mit.edu 36 15 83465170 83465170 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002605 exon18 c.C1873T p.L625L . . . MRPS11 64963 broad.mit.edu 36 15 86819415 86819415 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022839 exon4 c.C352T p.R118W . . . ACAN 176 broad.mit.edu 36 15 87202985 87202986 + Nonsense_Mutation DNP CC TT TT novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 CC CC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001135 exon12 c.6165_6166TT . . . . RLBP1 6017 broad.mit.edu 36 15 87559312 87559312 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000326 exon6 c.G508T p.E170X . . . WDR93 56964 broad.mit.edu 36 15 88082455 88082455 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020212 exon16 c.C1945T p.R649C . . . PRC1 9055 broad.mit.edu 36 15 89311392 89311392 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003981 exon15 c.C1836T p.I612I . . . SV2B 9899 broad.mit.edu 36 15 89628403 89628403 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014848 exon12 c.G1656T p.G552G . . . CHD2 1106 broad.mit.edu 36 15 91293221 91293221 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042572 exon13 c.G1413T p.K471N . . . SYNM 23336 broad.mit.edu 36 15 97487144 97487144 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015286 exon4 c.A1055C p.K352T . . . MEF2A 4205 broad.mit.edu 36 15 98070271 98070271 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005587 exon11 c.G1272A p.P424P . . . ADAMTS17 170691 broad.mit.edu 36 15 98406709 98406709 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139057 exon18 c.A2467G p.T823A . . . ALDH1A3 220 broad.mit.edu 36 15 99251781 99251781 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000693 exon6 c.G637A p.A213T . . . LRRK1 79705 broad.mit.edu 36 15 99368274 99368274 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024652 exon8 c.T1086G p.N362K . . . CHSY1 22856 broad.mit.edu 36 15 99535734 99535734 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014918 exon3 c.C1791T p.A597A . . . CHSY1 22856 broad.mit.edu 36 15 99535892 99535892 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014918 exon3 c.G1633A p.D545N . . . PCSK6 5046 broad.mit.edu 36 15 99789776 99789776 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138322 exon3 c.G453A p.A151A . . . PPL 5493 broad.mit.edu 36 16 4874480 4874481 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002705 exon22 c.4177_4178insG p.Q1393fs . . . CIITA 4261 broad.mit.edu 36 16 10911592 10911592 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000246 exon13 c.C2863T p.R955W . . . CLEC16A 23274 broad.mit.edu 36 16 10959252 10959252 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015226 exon2 c.G193T p.D65Y . . . CLEC16A 23274 broad.mit.edu 36 16 10970624 10970624 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015226 exon4 c.C449T p.S150L . . . MKL2 57496 broad.mit.edu 36 16 14248361 14248361 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014048 exon12 c.C1743T p.I581I . . . MYH11 4629 broad.mit.edu 36 16 15783743 15783743 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040114 exon7 c.C747A p.F249L . . . ABCC1 4363 broad.mit.edu 36 16 16112740 16112740 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019862 exon21 c.T2702G p.L901R . . . XYLT1 64131 broad.mit.edu 36 16 17136071 17136071 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022166 exon9 c.T1787G p.F596C . . . COQ7 10229 broad.mit.edu 36 16 18994640 18994640 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190983 exon4 c.C350T p.T117M . . . TMC5 79838 broad.mit.edu 36 16 19362915 19362915 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105248 exon4 c.G800T p.R267I . . . GPR139 124274 broad.mit.edu 36 16 19951020 19951020 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002911 exon2 c.C600A p.F200L . . . DNAH3 55567 broad.mit.edu 36 16 20919159 20919159 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017539 exon43 c.C6309T p.F2103F . . . DNAH3 55567 broad.mit.edu 36 16 21055237 21055237 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017539 exon6 c.G795A p.T265T . . . METTL9 51108 broad.mit.edu 36 16 21531577 21531577 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016025 exon2 c.G276A p.S92S . . . VWA3A 146177 broad.mit.edu 36 16 22050028 22050028 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173615 exon18 c.T1654C p.F552L . . . USP31 57478 broad.mit.edu 36 16 23021204 23021204 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020718 exon6 c.G1171A p.D391N . . . SCNN1B 6338 broad.mit.edu 36 16 23298950 23298950 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000336 exon12 c.G1501T p.E501X . . . COG7 91949 broad.mit.edu 36 16 23363900 23363900 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153603 exon3 c.C405T p.S135S . . . GGA2 23062 broad.mit.edu 36 16 23410529 23410529 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015044 exon5 c.C445T p.R149X . . . PLK1 5347 broad.mit.edu 36 16 23599848 23599848 + Silent SNP C T T rs11645497 byHapMap TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005030 exon3 c.C690T p.F230F . . . ERN2 10595 broad.mit.edu 36 16 23614772 23614772 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033266 exon14 c.T1698G p.I566M . . . ERN2 10595 broad.mit.edu 36 16 23625888 23625888 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033266 exon5 c.C464T p.T155I . . . PRKCB 5579 broad.mit.edu 36 16 24013103 24013103 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_212535 exon7 c.G805A p.A269T . . . PRKCB 5579 broad.mit.edu 36 16 24133596 24133596 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002738 exon17 c.C1980A p.S660S . . . TBC1D24 57465 broad.mit.edu 36 16 2489915 2489915 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199107 exon6 c.G1285T p.E429X . . . KIAA0556 23247 broad.mit.edu 36 16 27680347 27680347 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015202 exon19 c.C3744A p.I1248I . . . PRSS21 10942 broad.mit.edu 36 16 2808787 2808787 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006799 exon4 c.G366A p.S122S . . . CLN3 1201 broad.mit.edu 36 16 28402835 28402835 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042432 exon10 c.G783A p.S261S . . . ATXN2L 11273 broad.mit.edu 36 16 28749495 28749495 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148415 exon9 c.C1093T p.R365X . . . ITGAX 3687 broad.mit.edu 36 16 31298461 31298461 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000887 exon24 c.G2861A p.R954K . . . ITGAD 3681 broad.mit.edu 36 16 31333362 31333362 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005353 exon17 c.A2086G p.T696A . . . SLC5A2 6524 broad.mit.edu 36 16 31404605 31404605 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003041 exon4 c.G358A p.A120T . . . ZNF267 10308 broad.mit.edu 36 16 31834606 31834606 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003414 exon4 c.A1535C p.K512T . . . ZNF200 7752 broad.mit.edu 36 16 3214190 3214190 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003454 exon5 c.A891G p.K297K . . . ZNF200 7752 broad.mit.edu 36 16 3214539 3214539 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003454 exon5 c.C542T p.S181F . . . OR2C1 4993 broad.mit.edu 36 16 3346318 3346318 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012368 exon1 c.T377C p.V126A . . . ZNF174 7727 broad.mit.edu 36 16 3398833 3398833 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_003450 exon3 c.G1137A p.E379E . . . CREBBP 1387 broad.mit.edu 36 16 3768176 3768176 + Nonsense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004380 exon10 c.T1950G p.Y650X . . . CREBBP 1387 broad.mit.edu 36 16 3781994 3781994 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004380 exon5 c.G1319A p.R440Q . . . CREBBP 1387 broad.mit.edu 36 16 3840436 3840436 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004380 exon2 c.G661A p.G221R . . . C16orf87 388272 broad.mit.edu 36 16 45394378 45394378 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001436 exon4 c.G452T p.R151I . . . NETO2 81831 broad.mit.edu 36 16 45675119 45675119 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018092 exon9 c.T1092G p.I364M . . . ITFG1 81533 broad.mit.edu 36 16 46042881 46042881 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_030790 exon5 c.T487G p.F163V . . . C16orf71 146562 broad.mit.edu 36 16 4726557 4726557 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139170 exon2 c.C41A p.S14Y . . . BRD7 29117 broad.mit.edu 36 16 48911365 48911365 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013263 exon16 c.C1834T p.R612X . . . SNX20 124460 broad.mit.edu 36 16 49265409 49265409 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182854 exon4 c.C360T p.F120F . . . SALL1 6299 broad.mit.edu 36 16 49733300 49733300 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002968 exon2 c.G334A p.D112N . . . CHD9 80205 broad.mit.edu 36 16 51865666 51865666 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025134 exon24 c.G4918T p.E1640X . . . RPGRIP1L 23322 broad.mit.edu 36 16 52210606 52210606 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127897 exon22 c.C3208T p.R1070W . . . IRX3 79191 broad.mit.edu 36 16 52876633 52876633 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024336 exon2 c.G661A p.D221N . . . MMP2 4313 broad.mit.edu 36 16 54074393 54074393 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004530 exon2 c.G225T p.K75N . . . SLC6A2 6530 broad.mit.edu 36 16 54283363 54283363 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172504 exon5 c.C816T p.F272F . . . BBS2 583 broad.mit.edu 36 16 55076196 55076196 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031885 exon17 c.G2144A p.R715Q . . . BBS2 583 broad.mit.edu 36 16 55097447 55097447 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031885 exon7 c.G720A p.S240S . . . CETP 1071 broad.mit.edu 36 16 55561058 55561058 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000078 exon4 c.G403A p.D135N . . . NLRC5 84166 broad.mit.edu 36 16 55668259 55668259 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032206 exon40 c.C4779T p.V1593V . . . CNGB1 1258 broad.mit.edu 36 16 56496173 56496173 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001297 exon26 c.C2600T p.T867M . . . CNGB1 1258 broad.mit.edu 36 16 56511817 56511817 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001297 exon19 c.C1776A p.T592T . . . CNOT1 23019 broad.mit.edu 36 16 57170192 57170192 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206999 exon13 c.G1496A p.R499H . . . CDH11 1009 broad.mit.edu 36 16 63596094 63596094 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001797 exon3 c.C180A p.F60L . . . CBFB 865 broad.mit.edu 36 16 65673671 65673671 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001755 exon5 c.G454A p.E152K . . . KIAA0895L 653319 broad.mit.edu 36 16 65770892 65770892 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040715 exon4 c.G789A p.A263A . . . RLTPR 146206 broad.mit.edu 36 16 66245798 66245798 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013838 exon31 c.G3284A p.R1095Q . . . TMCO7 79613 broad.mit.edu 36 16 67451634 67451634 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024562 exon2 c.C441T p.F147F . . . WWP2 11060 broad.mit.edu 36 16 68479478 68479478 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199423 exon9 c.G739T p.E247X . . . COG4 25839 broad.mit.edu 36 16 69099838 69099838 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015386 exon8 c.A1033G p.N345D . . . HYDIN 54768 broad.mit.edu 36 16 69441989 69441989 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon74 c.G12511T p.E4171X . . . HYDIN 54768 broad.mit.edu 36 16 69452101 69452101 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon70 c.G11979A p.K3993K . . . HYDIN 54768 broad.mit.edu 36 16 69454583 69454583 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon68 c.C11472T p.F3824F . . . HYDIN 54768 broad.mit.edu 36 16 69466255 69466255 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon63 c.C10623T p.I3541I . . . ZNF23 7571 broad.mit.edu 36 16 70041212 70041212 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145911 exon6 c.G217A p.D73N . . . ZNF23 7571 broad.mit.edu 36 16 70044751 70044751 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145911 exon5 c.T38C p.F13S . . . TAT 6898 broad.mit.edu 36 16 70167380 70167380 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000353 exon3 c.G286A p.A96T . . . AP1G1 164 broad.mit.edu 36 16 70362586 70362586 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001030007 exon5 c.A539C p.K180T . . . HPR 3250 broad.mit.edu 36 16 70668331 70668331 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020995 exon5 c.T897C p.S299S . . . PMFBP1 83449 broad.mit.edu 36 16 70714316 70714316 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160213 exon20 c.G2331T p.K777N . . . ZFHX3 463 broad.mit.edu 36 16 71386881 71386881 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006885 exon9 c.A7201C p.T2401P . . . WDR59 79726 broad.mit.edu 36 16 73513398 73513398 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030581 exon10 c.C834T p.F278F . . . CNTNAP4 85445 broad.mit.edu 36 16 75112606 75112606 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138994 exon15 c.G2215T p.E739X . . . CENPN 55839 broad.mit.edu 36 16 79608906 79608906 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018455 exon5 c.C320T p.S107L . . . PKD1L2 114780 broad.mit.edu 36 16 79745417 79745417 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052892 exon25 c.G4153T p.D1385Y . . . PKD1L2 114780 broad.mit.edu 36 16 79772340 79772340 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052892 exon12 c.G2035T p.D679Y . . . CDH13 1012 broad.mit.edu 36 16 82077745 82077745 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001257 exon7 c.C944T p.A315V . . . LRRC50 123872 broad.mit.edu 36 16 82763404 82763404 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178452 exon9 c.C1566T p.F522F . . . ZDHHC7 55625 broad.mit.edu 36 16 83567505 83567505 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017740 exon8 c.G872A p.R291Q . . . FAM92B 339145 broad.mit.edu 36 16 83698956 83698956 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198491 exon4 c.G423T p.M141I . . . ZC3H18 124245 broad.mit.edu 36 16 87193814 87193814 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144604 exon6 c.C1045T p.R349X . . . ABAT 18 broad.mit.edu 36 16 8770216 8770216 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000663 exon11 c.A701G p.H234R . . . ZNF778 197320 broad.mit.edu 36 16 87820917 87820917 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182531 exon6 c.T636C p.L212L . . . ANKRD11 29123 broad.mit.edu 36 16 87877933 87877933 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013275 exon9 c.C2518T p.R840W . . . SPG7 6687 broad.mit.edu 36 16 88106863 88106863 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003119 exon3 c.C293T p.T98I . . . SPIRE2 84501 broad.mit.edu 36 16 88453249 88453249 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032451 exon9 c.G1448A p.G483D . . . USP7 7874 broad.mit.edu 36 16 8904713 8904713 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003470 exon16 c.C1752T p.Y584Y . . . USP7 7874 broad.mit.edu 36 16 8905900 8905900 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003470 exon15 c.G1597A p.D533N . . . GRIN2A 2903 broad.mit.edu 36 16 9939643 9939643 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134408 exon3 c.C681A p.I227I . . . DOK4 55715 broad.mit.edu 36 16 56065150 56065150 + Splice_Site SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . FXR2 9513 broad.mit.edu 36 17 7436846 7436847 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004860 exon14 c.1620_1621insC p.P540fs . . . MYH13 8735 broad.mit.edu 36 17 10155197 10155197 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003802 exon33 c.A4604C p.K1535T . . . MYH13 8735 broad.mit.edu 36 17 10156736 10156736 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003802 exon31 c.C4245T p.C1415C . . . MYH13 8735 broad.mit.edu 36 17 10163186 10163186 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003802 exon27 c.G3384A p.A1128A . . . MYH13 8735 broad.mit.edu 36 17 10164436 10164436 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_003802 exon25 c.G3214A p.D1072N . . . MYH8 4626 broad.mit.edu 36 17 10237229 10237229 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002472 exon36 c.G5190T p.K1730N . . . MYH8 4626 broad.mit.edu 36 17 10245199 10245199 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002472 exon25 c.G3143A p.R1048Q . . . MYH4 4622 broad.mit.edu 36 17 10297782 10297782 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017533 exon23 c.A2837C p.K946T . . . MYH1 4619 broad.mit.edu 36 17 10340473 10340473 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005963 exon34 c.G4775A p.R1592K . . . MYH1 4619 broad.mit.edu 36 17 10341399 10341399 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005963 exon32 c.G4461T p.K1487N . . . MYH3 4621 broad.mit.edu 36 17 10476822 10476822 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002470 exon33 c.C4652A p.A1551D . . . MYH3 4621 broad.mit.edu 36 17 10481955 10481955 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002470 exon27 c.G3752A p.R1251Q . . . MYH3 4621 broad.mit.edu 36 17 10483667 10483667 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002470 exon22 c.G2860T p.D954Y . . . DNAH9 1770 broad.mit.edu 36 17 11508947 11508947 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001372 exon15 c.T2668G p.L890V . . . DNAH9 1770 broad.mit.edu 36 17 11678854 11678854 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001372 exon49 c.C9421T p.Q3141X . . . MYOCD 93649 broad.mit.edu 36 17 12580289 12580289 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146312 exon6 c.C502T p.R168X . . . MYOCD 93649 broad.mit.edu 36 17 12590006 12590006 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146312 exon9 c.G1017A p.T339T MYOCD,central_nervous_system,brain,Substitution - coding silent,0 . . MYOCD 93649 broad.mit.edu 36 17 12607306 12607306 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146312 exon14 c.T2581C p.S861P . . . ARHGAP44 9912 broad.mit.edu 36 17 12834099 12834099 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014859 exon21 c.G2343A p.S781S . . . HS3ST3B1 9953 broad.mit.edu 36 17 14189671 14189671 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006041 exon2 c.G1156A p.D386N . . . TEKT3 64518 broad.mit.edu 36 17 15175601 15175601 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031898 exon3 c.G27A p.T9T . . . CDRT1 374286 broad.mit.edu 36 17 15463175 15463175 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006382 exon1 c.C377T p.A126V . . . ZNF286A 57335 broad.mit.edu 36 17 15560542 15560542 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130842 exon6 c.G779A p.R260Q . . . NCOR1 9611 broad.mit.edu 36 17 15965265 15965265 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190440 exon15 c.G1678T p.E560X . . . NCOR1 9611 broad.mit.edu 36 17 15970228 15970228 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190440 exon14 c.G1527A p.S509S . . . MED9 55090 broad.mit.edu 36 17 17335516 17335516 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018019 exon2 c.C423T p.F141F . . . LRRC48 83450 broad.mit.edu 36 17 17848494 17848494 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031294 exon10 c.G1092A p.A364A . . . ALDH3A2 224 broad.mit.edu 36 17 19515671 19515671 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000382 exon9 c.C1253T p.T418I . . . ALDH3A1 218 broad.mit.edu 36 17 19586490 19586490 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135168 exon3 c.C440T p.A147V . . . METT10D 79066 broad.mit.edu 36 17 2270047 2270047 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024086 exon10 c.T1656C p.R552R . . . METT10D 79066 broad.mit.edu 36 17 2270442 2270442 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024086 exon10 c.G1261T p.E421X . . . KIAA0100 9703 broad.mit.edu 36 17 23979560 23979560 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014680 exon24 c.A4444C p.N1482H . . . EFCAB5 374786 broad.mit.edu 36 17 25443165 25443165 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198529 exon21 c.C4088A p.S1363Y . . . CPD 1362 broad.mit.edu 36 17 25774686 25774686 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199775 exon6 c.G953A p.G318E . . . GOSR1 9527 broad.mit.edu 36 17 25843894 25843894 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007024 exon6 c.G317A p.R106Q . . . ATAD5 79915 broad.mit.edu 36 17 26187000 26187000 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024857 exon2 c.A1775C p.K592T . . . ADAP2 55803 broad.mit.edu 36 17 26278023 26278023 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018404 exon3 c.T278C p.V93A . . . C17orf97 400566 broad.mit.edu 36 17 263509 263509 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013672 exon2 c.C559T p.R187C . . . OMG 4974 broad.mit.edu 36 17 26646240 26646240 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002544 exon2 c.G1236T p.K412N . . . OMG 4974 broad.mit.edu 36 17 26646920 26646920 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002544 exon2 c.A556G p.T186A . . . NF1 4763 broad.mit.edu 36 17 26707618 26707618 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000267 exon51 c.T7567G p.F2523V . . . UTP6 55813 broad.mit.edu 36 17 27224549 27224549 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018428 exon16 c.G1457A p.R486Q . . . RHBDL3 162494 broad.mit.edu 36 17 27656497 27656497 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138328 exon7 c.A806G p.D269G . . . ACCN1 40 broad.mit.edu 36 17 28368742 28368742 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183377 exon8 c.T1515G p.I505M . . . ACCN1 40 broad.mit.edu 36 17 29507252 29507252 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001094 exon1 c.G413A p.R138Q . . . CCL13 6357 broad.mit.edu 36 17 29707666 29707666 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005408 exon1 c.T8C p.V3A . . . AMAC1 146861 broad.mit.edu 36 17 30545214 30545214 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152462 exon1 c.C226T p.R76X . . . OR1A1 8383 broad.mit.edu 36 17 3066521 3066521 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014565 exon1 c.T857C p.F286S . . . CCL23 6368 broad.mit.edu 36 17 31364373 31364373 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145898 exon4 c.C340T p.R114W . . . CCL18 6362 broad.mit.edu 36 17 31422443 31422443 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002988 exon3 c.C199T p.R67W . . . MRM1 79922 broad.mit.edu 36 17 32038800 32038800 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024864 exon5 c.C898A p.L300I . . . ACACA 31 broad.mit.edu 36 17 32619442 32619442 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198834 exon39 c.G4664A p.R1555H . . . ACACA 31 broad.mit.edu 36 17 32714343 32714343 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198834 exon5 c.G548A p.R183Q . . . GPR179 440435 broad.mit.edu 36 17 33736015 33736015 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004334 exon11 c.G6963A p.R2321R . . . GPR179 440435 broad.mit.edu 36 17 33738747 33738747 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004334 exon11 c.A4231G p.K1411E . . . PCGF2 7703 broad.mit.edu 36 17 34148885 34148885 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007144 exon6 c.G278A p.R93Q . . . MED1 5469 broad.mit.edu 36 17 34819943 34819943 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004774 exon17 c.A2057C p.K686T . . . CDK12 51755 broad.mit.edu 36 17 34921310 34921310 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016507 exon8 c.G2669A p.R890H . . . C17orf37 84299 broad.mit.edu 36 17 35139368 35139368 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032339 exon4 c.G281A p.R94Q . . . GSDMB 55876 broad.mit.edu 36 17 35315682 35315682 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042471 exon8 c.G932A p.G311E . . . GSDMB 55876 broad.mit.edu 36 17 35322163 35322163 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042471 exon3 c.A349C p.K117Q . . . GSDMA 284110 broad.mit.edu 36 17 35381335 35381335 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178171 exon5 c.C591T p.I197I . . . RAPGEFL1 51195 broad.mit.edu 36 17 35594121 35594121 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016339 exon3 c.C111A p.I37I . . . GSG2 83903 broad.mit.edu 36 17 3575303 3575303 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031965 exon1 c.A1325T p.Y442F . . . TOP2A 7153 broad.mit.edu 36 17 35802460 35802460 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001067 exon30 c.G3867T p.K1289N . . . ITGAE 3682 broad.mit.edu 36 17 3598017 3598017 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002208 exon17 c.G2103A p.V701V . . . ITGAE 3682 broad.mit.edu 36 17 3601697 3601697 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002208 exon15 c.C1889T p.S630L . . . KRT34 3885 broad.mit.edu 36 17 36790934 36790934 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021013 exon3 c.G614A p.R205H . . . KRT31 3881 broad.mit.edu 36 17 36805311 36805311 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002277 exon4 c.G679A p.E227K . . . KRT13 3860 broad.mit.edu 36 17 36913102 36913102 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153490 exon3 c.A698C p.N233T . . . KRT16 3868 broad.mit.edu 36 17 37021474 37021474 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005557 exon2 c.C557T p.A186V . . . CNTNAP1 8506 broad.mit.edu 36 17 38097052 38097052 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003632 exon15 c.G2341A p.D781N . . . BRCA1 672 broad.mit.edu 36 17 38480041 38480041 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007294 exon14 c.C4508A p.S1503X . . . ZZEF1 23140 broad.mit.edu 36 17 3955760 3955760 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015113 exon7 c.A1370G p.D457G . . . DBF4B 80174 broad.mit.edu 36 17 40174277 40174277 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025104 exon10 c.C761A p.S254Y . . . CDC27 996 broad.mit.edu 36 17 42604316 42604316 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114091 exon3 c.T217C p.Y73H . . . ITGB3 3690 broad.mit.edu 36 17 42735176 42735176 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000212 exon13 c.A2105C p.K702T . . . C17orf57 124989 broad.mit.edu 36 17 42807160 42807160 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152347 exon12 c.C1201A p.H401N . . . NPEPPS 9520 broad.mit.edu 36 17 43017869 43017869 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006310 exon6 c.T653C p.V218A . . . LRRC46 90506 broad.mit.edu 36 17 43266800 43266800 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033413 exon3 c.C127T p.L43F . . . B4GALNT2 124872 broad.mit.edu 36 17 44601888 44601888 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153446 exon11 c.C1500A p.F500L . . . ZNF652 22834 broad.mit.edu 36 17 44750031 44750031 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145365 exon2 c.T56C p.V19A . . . NXPH3 11248 broad.mit.edu 36 17 45011482 45011482 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007225 exon2 c.G580A p.D194N . . . NXPH3 11248 broad.mit.edu 36 17 45011572 45011572 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007225 exon2 c.G670A p.A224T . . . MYST2 11143 broad.mit.edu 36 17 45230719 45230719 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007067 exon4 c.G380A p.R127Q . . . ITGA3 3675 broad.mit.edu 36 17 45503228 45503228 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002204 exon5 c.G686A p.R229H . . . ITGA3 3675 broad.mit.edu 36 17 45513723 45513723 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002204 exon23 c.C2871T p.F957F . . . ACSF2 80221 broad.mit.edu 36 17 45858633 45858633 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025149 exon1 c.C12T p.Y4Y . . . CHAD 1101 broad.mit.edu 36 17 45900965 45900965 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001267 exon1 c.C209T p.S70L . . . KIF2B 84643 broad.mit.edu 36 17 49256729 49256729 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032559 exon1 c.G1336A p.V446I . . . USP6 9098 broad.mit.edu 36 17 4999536 4999536 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004505 exon23 c.G2739T p.K913N . . . USP6 9098 broad.mit.edu 36 17 5014678 5014678 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004505 exon28 c.C3698A p.A1233D . . . ZNF594 84622 broad.mit.edu 36 17 5027836 5027836 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032530 exon2 c.G440T p.R147I . . . ANKFN1 162282 broad.mit.edu 36 17 51585880 51585880 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153228 exon1 c.C11A p.S4Y . . . RABEP1 9135 broad.mit.edu 36 17 5182149 5182149 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001083585 exon5 c.G640A p.A214T . . . COIL 8161 broad.mit.edu 36 17 52382342 52382342 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004645 exon2 c.G1260A p.G420G . . . MPO 4353 broad.mit.edu 36 17 53712220 53712220 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000250 exon3 c.C403T p.R135X . . . TEX14 56155 broad.mit.edu 36 17 54031338 54031338 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198393 exon14 c.C2367T p.G789G . . . TEX14 56155 broad.mit.edu 36 17 54031431 54031431 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198393 exon14 c.C2274T p.V758V . . . TMEM49 81671 broad.mit.edu 36 17 55167535 55167535 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030938 exon3 c.T131G p.I44S . . . HEATR6 63897 broad.mit.edu 36 17 55481792 55481792 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_022070 exon16 c.G2478T p.K826N . . . USP32 84669 broad.mit.edu 36 17 55639229 55639229 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032582 exon25 c.T2972G p.F991C . . . C17orf64 124773 broad.mit.edu 36 17 55861625 55861625 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181707 exon5 c.C550T p.L184L . . . NACA2 342538 broad.mit.edu 36 17 57022974 57022974 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199290 exon1 c.C350T p.S117L . . . BRIP1 83990 broad.mit.edu 36 17 57233478 57233478 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032043 exon8 c.A1058G p.Y353C . . . EFCAB3 146779 broad.mit.edu 36 17 57837586 57837586 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173503 exon7 c.A502C p.K168Q . . . TLK2 11011 broad.mit.edu 36 17 58009608 58009608 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006852 exon14 c.A1227C p.E409D . . . TANC2 26115 broad.mit.edu 36 17 58530311 58530311 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025185 exon3 c.C183T p.Y61Y . . . TANC2 26115 broad.mit.edu 36 17 58852107 58852107 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025185 exon25 c.C5032A p.Q1678K . . . TANC2 26115 broad.mit.edu 36 17 58852987 58852987 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025185 exon25 c.C5912T p.S1971F . . . DDX42 11325 broad.mit.edu 36 17 59249189 59249189 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203499 exon18 c.G2516A p.R839H . . . FTSJ3 117246 broad.mit.edu 36 17 59252718 59252718 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017647 exon16 c.C1614T p.I538I . . . GH2 2689 broad.mit.edu 36 17 59311773 59311773 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022557 exon4 c.C547T p.Q183X . . . GH1 2688 broad.mit.edu 36 17 59349202 59349202 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000515 exon3 c.G198A p.Q66Q . . . ICAM2 3384 broad.mit.edu 36 17 59436417 59436417 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000873 exon2 c.C110T p.A37V . . . CCDC45 90799 broad.mit.edu 36 17 59952692 59952692 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138363 exon10 c.T1064C p.F355S . . . CCDC46 201134 broad.mit.edu 36 17 61278548 61278548 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199165 exon21 c.C2230T p.R744W . . . CCDC46 201134 broad.mit.edu 36 17 61603596 61603596 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199165 exon3 c.G111A p.R37R . . . CACNG5 27091 broad.mit.edu 36 17 62307263 62307263 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014404 exon3 c.C411A p.F137L . . . PSMD12 5718 broad.mit.edu 36 17 62772434 62772434 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174871 exon7 c.C737T p.A246V . . . WIPI1 55062 broad.mit.edu 36 17 63943366 63943366 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017983 exon6 c.C611T p.A204V . . . ABCA8 10351 broad.mit.edu 36 17 64425785 64425785 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007168 exon14 c.C1925T p.A642V . . . ABCA9 10350 broad.mit.edu 36 17 64551411 64551411 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080283 exon6 c.T614C p.V205A . . . ABCA6 23460 broad.mit.edu 36 17 64595927 64595927 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080284 exon28 c.G3674T p.R1225I . . . ABCA6 23460 broad.mit.edu 36 17 64598932 64598932 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_080284 exon26 c.A3475G p.M1159V . . . ABCA6 23460 broad.mit.edu 36 17 64610664 64610664 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080284 exon21 c.A2781C p.Q927H . . . ABCA6 23460 broad.mit.edu 36 17 64625634 64625634 + De_novo_Start_OutOfFrame SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080284 exon11 c.G1495T p.G499C . . . ABCA6 23460 broad.mit.edu 36 17 64648430 64648430 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080284 exon2 c.A10C p.K4Q . . . ABCA10 10349 broad.mit.edu 36 17 64693250 64693250 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080282 exon21 c.G2460T p.K820N . . . ABCA10 10349 broad.mit.edu 36 17 64701565 64701565 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080282 exon14 c.G1506T p.K502N . . . KIAA0753 9851 broad.mit.edu 36 17 6472550 6472550 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014804 exon3 c.G329T p.R110L . . . KCNJ16 3773 broad.mit.edu 36 17 65640901 65640901 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018658 exon5 c.C1078T p.R360X . . . KCNJ2 3759 broad.mit.edu 36 17 65683819 65683819 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000891 exon2 c.C1044T p.Y348Y . . . SOX9 6662 broad.mit.edu 36 17 67630526 67630526 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000346 exon2 c.A503G p.D168G . . . SSTR2 6752 broad.mit.edu 36 17 68677523 68677523 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001050 exon2 c.G470A p.R157Q . . . COG1 9382 broad.mit.edu 36 17 68705129 68705129 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018714 exon4 c.C912T p.A304A . . . COG1 9382 broad.mit.edu 36 17 68714950 68714950 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018714 exon13 c.G2765A p.R922Q . . . CD300LB 124599 broad.mit.edu 36 17 70033702 70033702 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174892 exon2 c.C261T p.C87C . . . FDXR 2232 broad.mit.edu 36 17 70372647 70372647 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024417 exon7 c.G611T p.R204I . . . OTOP3 347741 broad.mit.edu 36 17 70457093 70457093 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178233 exon7 c.A1778G p.Y593C . . . C17orf28 283987 broad.mit.edu 36 17 70461332 70461332 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030630 exon15 c.A1874C p.K625T . . . GGA3 23163 broad.mit.edu 36 17 70748668 70748668 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014001 exon10 c.T913G p.L305V . . . MIF4GD 57409 broad.mit.edu 36 17 70777799 70777799 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020679 exon2 c.G73A p.A25T . . . CLDN7 1366 broad.mit.edu 36 17 7104879 7104879 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185022 exon3 c.A373C p.I125L . . . UNK 85451 broad.mit.edu 36 17 71320805 71320805 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080419 exon6 c.C902T p.P301L . . . ACOX1 51 broad.mit.edu 36 17 71481337 71481337 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007292 exon3 c.A394G p.I132V . . . GPS2 2874 broad.mit.edu 36 17 7158400 7158400 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004489 exon4 c.A251G p.H84R . . . UBE2O 63893 broad.mit.edu 36 17 71903528 71903528 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022066 exon15 c.C2819A p.S940Y . . . RHBDF2 79651 broad.mit.edu 36 17 71987569 71987569 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024599 exon4 c.C200T p.A67V . . . POLR2A 5430 broad.mit.edu 36 17 7340913 7340913 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000937 exon5 c.T644G p.L215R . . . TNRC6C 57690 broad.mit.edu 36 17 73559109 73559109 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018996 exon4 c.C2371G p.P791A . . . USP36 57602 broad.mit.edu 36 17 74311297 74311297 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025090 exon16 c.G2575A p.A859T . . . DNAH2 146754 broad.mit.edu 36 17 7604889 7604889 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020877 exon17 c.G2892T p.E964D . . . DNAH2 146754 broad.mit.edu 36 17 7663267 7663267 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020877 exon71 c.G10831A p.A3611T . . . BAIAP2 10458 broad.mit.edu 36 17 76646337 76646337 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006340 exon3 c.C192T p.S64S . . . TBCD 6904 broad.mit.edu 36 17 78460459 78460459 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005993 exon22 c.C1993T p.R665C . . . C17orf68 80169 broad.mit.edu 36 17 8075507 8075507 + Silent SNP T A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025099 exon15 c.A2481T p.P827P . . . MYH10 4628 broad.mit.edu 36 17 8365164 8365164 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005964 exon16 c.C2029T p.R677C . . . PIK3R6 146850 broad.mit.edu 36 17 8667087 8667087 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010855 exon15 c.T1668G p.I556M . . . RCVRN 5957 broad.mit.edu 36 17 9745041 9745041 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002903 exon2 c.G483T p.K161N . . . GAS7 8522 broad.mit.edu 36 17 9778245 9778245 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003644 exon5 c.C428T p.A143V . . . TUBB6 84617 broad.mit.edu 36 18 12315539 12315539 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032525 exon4 c.C751T p.R251C . . . AFG3L2 10939 broad.mit.edu 36 18 12327411 12327411 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006796 exon16 c.C2104T p.R702X . . . SPIRE1 56907 broad.mit.edu 36 18 12525482 12525482 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020148 exon4 c.C722T p.A241V . . . CEP192 55125 broad.mit.edu 36 18 13039508 13039508 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032142 exon16 c.T2718G p.S906R . . . RNMT 8731 broad.mit.edu 36 18 13721677 13721677 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003799 exon3 c.A161G p.D54G . . . ZNF519 162655 broad.mit.edu 36 18 14095588 14095588 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145287 exon3 c.G951A p.E317E . . . ESCO1 114799 broad.mit.edu 36 18 17407904 17407904 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052911 exon4 c.G899A p.R300Q . . . ESCO1 114799 broad.mit.edu 36 18 17408097 17408097 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052911 exon4 c.G706A p.E236K . . . RBBP8 5932 broad.mit.edu 36 18 18860148 18860148 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203291 exon19 c.C2641T p.R881C . . . NPC1 4864 broad.mit.edu 36 18 19372555 19372555 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000271 exon20 c.G2990A p.R997K . . . NPC1 4864 broad.mit.edu 36 18 19388922 19388922 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000271 exon9 c.G1351A p.E451K . . . LAMA3 3909 broad.mit.edu 36 18 19587701 19587701 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198129 exon6 c.G874A p.D292N . . . CABYR 26256 broad.mit.edu 36 18 19990335 19990335 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153768 exon3 c.T818C p.V273A . . . ZNF521 25925 broad.mit.edu 36 18 21060198 21060198 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015461 exon4 c.C1682A p.S561Y . . . PSMA8 143471 broad.mit.edu 36 18 21978530 21978530 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144662 exon2 c.C112T p.R38X . . . CHST9 83539 broad.mit.edu 36 18 22750921 22750921 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031422 exon6 c.A632C p.K211T . . . CDH2 1000 broad.mit.edu 36 18 23839874 23839874 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001792 exon6 c.G784T p.D262Y . . . DSC3 1825 broad.mit.edu 36 18 26863587 26863587 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001941 exon4 c.G360A p.S120S . . . DSC1 1823 broad.mit.edu 36 18 26966614 26966614 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004948 exon14 c.G2153T p.R718I . . . DSG3 1830 broad.mit.edu 36 18 27295234 27295234 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001944 exon8 c.G860A p.R287Q . . . MCART2 147407 broad.mit.edu 36 18 27594257 27594257 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001034172 exon1 c.C366T p.G122G . . . SMCHD1 23347 broad.mit.edu 36 18 2767839 2767839 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015295 exon43 c.T5402G p.F1801C . . . SMCHD1 23347 broad.mit.edu 36 18 2768215 2768215 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015295 exon44 c.C5525T p.A1842V . . . SMCHD1 23347 broad.mit.edu 36 18 2774559 2774559 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015295 exon45 c.C5659T p.R1887W . . . MEP1B 4225 broad.mit.edu 36 18 28044484 28044484 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005925 exon10 c.C942T p.F314F . . . MEP1B 4225 broad.mit.edu 36 18 28049064 28049064 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005925 exon12 c.A1601G p.D534G . . . KLHL14 57565 broad.mit.edu 36 18 28511202 28511202 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020805 exon8 c.C1678T p.R560X . . . C18orf34 374864 broad.mit.edu 36 18 29101173 29101173 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198995 exon13 c.T1263G p.F421L . . . LPIN2 9663 broad.mit.edu 36 18 2927819 2927819 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014646 exon7 c.G1039A p.E347K . . . ZNF397 84307 broad.mit.edu 36 18 31079304 31079304 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032347 exon4 c.C637T p.R213X . . . ZSCAN30 100101467 broad.mit.edu 36 18 31087870 31087870 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001112734 exon4 c.G1027A p.D343N . . . GALNT1 2589 broad.mit.edu 36 18 31511663 31511663 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020474 exon3 c.G425A p.R142H . . . MYOM1 8736 broad.mit.edu 36 18 3154279 3154279 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019856 exon10 c.C1498T p.R500X . . . GALNT1 2589 broad.mit.edu 36 18 31543703 31543703 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020474 exon11 c.C1651T p.R551X . . . ELP2 55250 broad.mit.edu 36 18 31994917 31994917 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018255 exon17 c.T1713C p.F571F . . . FHOD3 80206 broad.mit.edu 36 18 32543256 32543256 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025135 exon15 c.G1912A p.E638K . . . DLGAP1 9229 broad.mit.edu 36 18 3571931 3571931 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003809 exon5 c.C1001T p.T334M . . . DLGAP1 9229 broad.mit.edu 36 18 3572185 3572185 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003809 exon5 c.G747A p.T249T . . . SETBP1 26040 broad.mit.edu 36 18 40785076 40785076 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015559 exon4 c.G1773T p.K591N . . . SETBP1 26040 broad.mit.edu 36 18 40787088 40787088 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015559 exon4 c.G3785A p.R1262K . . . SLC14A2 8170 broad.mit.edu 36 18 41473735 41473735 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007163 exon7 c.C870T p.V290V . . . SLC14A2 8170 broad.mit.edu 36 18 41500950 41500950 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_007163 exon13 c.C1610T p.S537F . . . KIAA1632 57724 broad.mit.edu 36 18 41786511 41786511 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020964 exon3 c.G1105A p.D369N . . . ST8SIA5 29906 broad.mit.edu 36 18 42522749 42522749 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013305 exon4 c.G443A p.R148H . . . PIAS2 9063 broad.mit.edu 36 18 42654986 42654986 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173206 exon12 c.C1556T p.S519L . . . KIAA0427 9811 broad.mit.edu 36 18 44637957 44637957 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142397 exon12 c.C1534T p.L512F . . . LIPG 9388 broad.mit.edu 36 18 45349888 45349888 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006033 exon4 c.C543T p.F181F . . . SMAD4 4089 broad.mit.edu 36 18 46827608 46827608 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005359 exon2 c.G194A p.G65E . . . SMAD4 4089 broad.mit.edu 36 18 46829204 46829204 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005359 exon3 c.G400A p.E134K . . . DCC 1630 broad.mit.edu 36 18 49085995 49085995 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005215 exon13 c.T1961G p.F654C . . . STARD6 147323 broad.mit.edu 36 18 50112190 50112190 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139171 exon4 c.C305T p.A102V . . . WDR7 23335 broad.mit.edu 36 18 52500929 52500929 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015285 exon5 c.A367G p.N123D . . . WDR7 23335 broad.mit.edu 36 18 52512945 52512945 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015285 exon10 c.T1064G p.I355S . . . ATP8B1 5205 broad.mit.edu 36 18 53513761 53513761 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005603 exon9 c.G700T p.E234X . . . NEDD4L 23327 broad.mit.edu 36 18 54141472 54141472 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015277 exon8 c.C439T p.R147X . . . ALPK2 115701 broad.mit.edu 36 18 54398713 54398713 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052947 exon4 c.C275A p.S92Y . . . MALT1 10892 broad.mit.edu 36 18 54565722 54565722 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173844 exon16 c.T2110C p.L704L . . . CCBE1 147372 broad.mit.edu 36 18 55298441 55298441 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133459 exon3 c.C222T p.C74C . . . KIAA1468 57614 broad.mit.edu 36 18 58105670 58105670 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020854 exon26 c.T3360C p.L1120L . . . PHLPP1 23239 broad.mit.edu 36 18 58713235 58713235 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194449 exon5 c.T2078C p.L693S . . . TMEM200C 645369 broad.mit.edu 36 18 5880370 5880370 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080209 exon1 c.G1693A p.A565T . . . TMEM200C 645369 broad.mit.edu 36 18 5881883 5881883 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080209 exon1 c.C180A p.I60I . . . SERPINB7 8710 broad.mit.edu 36 18 59614539 59614539 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003784 exon5 c.G396A p.T132T . . . SERPINB2 5055 broad.mit.edu 36 18 59721454 59721454 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002575 exon8 c.C1183A p.L395I . . . SERPINB8 5271 broad.mit.edu 36 18 59801828 59801828 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002640 exon5 c.G460A p.D154N . . . CLUL1 27098 broad.mit.edu 36 18 608095 608095 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014410 exon2 c.A95T p.E32V . . . CDH7 1005 broad.mit.edu 36 18 61662253 61662253 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004361 exon7 c.G1207T p.D403Y . . . L3MBTL4 91133 broad.mit.edu 36 18 6231430 6231430 + De_novo_Start_OutOfFrame SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173464 exon8 c.T479G p.F160C . . . DSEL 92126 broad.mit.edu 36 18 63332447 63332447 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032160 exon2 c.C409A p.P137T . . . CCDC102B 79839 broad.mit.edu 36 18 64655233 64655233 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001093729 exon4 c.G253A p.A85T . . . LAMA1 284217 broad.mit.edu 36 18 6932125 6932125 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005559 exon63 c.G9181A p.E3061K . . . LAMA1 284217 broad.mit.edu 36 18 6975566 6975566 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005559 exon38 c.C5456T p.A1819V . . . ZNF236 7776 broad.mit.edu 36 18 72768901 72768901 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007345 exon25 c.C4439T p.S1480L . . . ATP9B 374868 broad.mit.edu 36 18 75037816 75037816 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198531 exon8 c.G794A p.R265Q . . . RBFA 79863 broad.mit.edu 36 18 75906914 75906914 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T G Unknown Valid Germline Phase_I Capture Illumina Illumina HiSeq NM_001171967 exon6 c.T718G p.W240G . . . KIAA0802 23255 broad.mit.edu 36 18 8815986 8815986 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015210 exon15 c.C4478T p.S1493L . . . ANKRD12 23253 broad.mit.edu 36 18 9185623 9185623 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015208 exon3 c.G162T p.E54D . . . RALBP1 10928 broad.mit.edu 36 18 9503254 9503254 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006788 exon2 c.211delA p.K71fs . . . C18orf45 85019 broad.mit.edu 36 18 19205382 19205382 + Splice_Site SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . ICAM5 7087 broad.mit.edu 36 19 10265455 10265455 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003259 exon7 c.C1547T p.A516V . . . POLR2E 5434 broad.mit.edu 36 19 1041978 1041978 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002695 exon4 c.G358A p.D120N . . . KEAP1 9817 broad.mit.edu 36 19 10461346 10461346 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203500 exon4 c.G1509T p.M503I . . . ELAVL3 1995 broad.mit.edu 36 19 11430284 11430284 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001420 exon4 c.A476G p.D159G . . . ZNF491 126069 broad.mit.edu 36 19 11778241 11778241 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152356 exon3 c.G473A p.R158Q . . . ZNF763 284390 broad.mit.edu 36 19 11950548 11950548 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012753 exon4 c.C818A p.S273Y . . . ZNF625 90589 broad.mit.edu 36 19 12117780 12117780 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145233 exon4 c.C253T p.R85X . . . ZNF564 163050 broad.mit.edu 36 19 12498432 12498432 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144976 exon4 c.G1490T p.R497I . . . TNPO2 30000 broad.mit.edu 36 19 12690980 12690980 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136196 exon4 c.G188A p.R63H . . . CACNA1A 773 broad.mit.edu 36 19 13224807 13224807 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174080 exon30 c.C4867A p.L1623M . . . ZNF333 84449 broad.mit.edu 36 19 14690773 14690773 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_032433 exon12 c.G1634A p.R545H . . . EMR2 30817 broad.mit.edu 36 19 14744285 14744285 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152920 exon5 c.C224T p.S75L . . . OR7A5 26659 broad.mit.edu 36 19 14799387 14799387 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017506 exon1 c.T667G p.S223A . . . SLC1A6 6511 broad.mit.edu 36 19 14933848 14933848 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005071 exon5 c.G901T p.E301X . . . ILVBL 10994 broad.mit.edu 36 19 15091829 15091829 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006844 exon7 c.G780A p.P260P . . . NOTCH3 4854 broad.mit.edu 36 19 15157322 15157322 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000435 exon13 c.G2120A p.G707D . . . AKAP8 10270 broad.mit.edu 36 19 15345055 15345055 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005858 exon5 c.C468T p.F156F . . . CYP4F3 4051 broad.mit.edu 36 19 15631163 15631163 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199209 exon13 c.G1531A p.G511R . . . EPS15L1 58513 broad.mit.edu 36 19 16375555 16375555 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021235 exon15 c.G1615A p.E539K . . . SLC35E1 79939 broad.mit.edu 36 19 16538453 16538453 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024881 exon4 c.C646T p.R216W . . . SLC27A1 376497 broad.mit.edu 36 19 17472658 17472658 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198580 exon10 c.G1609A p.V537M . . . UNC13A 23025 broad.mit.edu 36 19 17610897 17610897 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080421 exon24 c.G3076A p.D1026N . . . UNC13A 23025 broad.mit.edu 36 19 17617912 17617912 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080421 exon17 c.G2053A p.A685T . . . FCHO1 23149 broad.mit.edu 36 19 17748057 17748057 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161359 exon15 c.G1034A p.G345D . . . JAK3 3718 broad.mit.edu 36 19 17804428 17804428 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000215 exon19 c.C2580T p.S860S . . . KIAA1683 80726 broad.mit.edu 36 19 18238387 18238387 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025249 exon3 c.G963T p.E321D . . . COPE 11316 broad.mit.edu 36 19 18878872 18878872 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007263 exon4 c.G340A p.V114M . . . DDX49 54555 broad.mit.edu 36 19 18896498 18896498 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019070 exon8 c.G919A p.V307M . . . NCAN 1463 broad.mit.edu 36 19 19190864 19190864 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004386 exon3 c.G214T p.D72Y . . . NCAN 1463 broad.mit.edu 36 19 19196156 19196156 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004386 exon5 c.G692A p.R231H . . . CILP2 148113 broad.mit.edu 36 19 19515086 19515086 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153221 exon7 c.G1007A p.R336Q . . . ZNF14 7561 broad.mit.edu 36 19 19683283 19683283 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021030 exon4 c.C1807T p.R603X . . . ZNF14 7561 broad.mit.edu 36 19 19683451 19683451 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021030 exon4 c.C1639T p.R547X . . . ZNF506 440515 broad.mit.edu 36 19 19766399 19766399 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145404 exon3 c.C1201T p.L401F . . . ZNF708 7562 broad.mit.edu 36 19 21267953 21267953 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021269 exon4 c.G1655T p.R552I . . . ZNF43 7594 broad.mit.edu 36 19 21784131 21784131 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003423 exon4 c.T548G p.F183C . . . ZNF208 7757 broad.mit.edu 36 19 21947938 21947938 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007153 exon4 c.C1738T p.P580S . . . ZNF98 148198 broad.mit.edu 36 19 22366767 22366767 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098626 exon4 c.A1110G p.R370R . . . ZNF492 57615 broad.mit.edu 36 19 22638881 22638881 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020855 exon4 c.T570G p.I190M . . . ZNF99 7652 broad.mit.edu 36 19 22732342 22732342 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080409 exon5 c.G1936T p.E646X . . . ZNF99 7652 broad.mit.edu 36 19 22732889 22732889 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080409 exon5 c.A1389C p.K463N . . . ZNF91 7644 broad.mit.edu 36 19 23335672 23335672 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003430 exon4 c.G1949T p.R650I . . . MIER2 54531 broad.mit.edu 36 19 278988 278988 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017550 exon4 c.G245A p.S82N . . . ZNF556 80032 broad.mit.edu 36 19 2828779 2828779 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024967 exon4 c.C823T p.R275X . . . ZNF556 80032 broad.mit.edu 36 19 2829237 2829237 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024967 exon4 c.C1281T p.C427C . . . THEG 51298 broad.mit.edu 36 19 318160 318160 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199202 exon6 c.A746C p.K249T . . . CCNE1 898 broad.mit.edu 36 19 35004856 35004856 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057182 exon7 c.A774C p.Q258H . . . C19orf2 8725 broad.mit.edu 36 19 35188445 35188445 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003796 exon6 c.C507T p.F169F . . . ZNF536 9745 broad.mit.edu 36 19 35626676 35626676 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014717 exon2 c.G367A p.D123N . . . ZFR2 23217 broad.mit.edu 36 19 3764930 3764930 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015174 exon14 c.C2130T p.V710V . . . WDR88 126248 broad.mit.edu 36 19 38315031 38315031 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173479 exon1 c.C116T p.A39V . . . EEF2 1938 broad.mit.edu 36 19 3929065 3929065 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001961 exon12 c.C1819T p.R607W . . . LSM14A 26065 broad.mit.edu 36 19 39404427 39404427 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114093 exon9 c.C1312T p.R438C . . . ZBTB7A 51341 broad.mit.edu 36 19 4005020 4005020 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015898 exon2 c.A1211G p.H404R . . . CD22 933 broad.mit.edu 36 19 40515479 40515479 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185100 exon3 c.G224T p.R75I . . . CD22 933 broad.mit.edu 36 19 40527851 40527851 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185100 exon11 c.C2190A p.F730L . . . MLL4 9757 broad.mit.edu 36 19 40903059 40903059 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014727 exon3 c.G970A p.E324K . . . ARHGAP33 115703 broad.mit.edu 36 19 40970108 40970108 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052948 exon21 c.C2318T p.S773L . . . CAPNS1 826 broad.mit.edu 36 19 41332357 41332357 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001749 exon10 c.A759C p.Q253H . . . ZNF260 339324 broad.mit.edu 36 19 41696875 41696875 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166037 exon3 c.T1106G p.F369C . . . ZNF461 92283 broad.mit.edu 36 19 41821925 41821925 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153257 exon6 c.C1162T p.R388W . . . ZNF790 388536 broad.mit.edu 36 19 42002290 42002290 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206894 exon5 c.C796A p.H266N . . . ZNF568 374900 broad.mit.edu 36 19 42133208 42133208 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198539 exon7 c.G1313A p.R438Q . . . ZNF420 147923 broad.mit.edu 36 19 42311637 42311637 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144689 exon5 c.G1904T p.R635I . . . ZNF585A 199704 broad.mit.edu 36 19 42335168 42335168 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199126 exon6 c.G1308T p.E436D . . . ZNF571 51276 broad.mit.edu 36 19 42747521 42747521 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016536 exon4 c.G1649T p.R550I . . . STAP2 55620 broad.mit.edu 36 19 4284981 4284981 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013841 exon2 c.C163T p.R55W . . . STAP2 55620 broad.mit.edu 36 19 4289660 4289660 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013841 exon1 c.C91T p.P31S . . . ZNF573 126231 broad.mit.edu 36 19 42921324 42921324 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172691 exon5 c.A1901C p.K634T . . . PSMD8 5714 broad.mit.edu 36 19 43557406 43557406 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002812 exon1 c.C325A p.L109I . . . RYR1 6261 broad.mit.edu 36 19 43694609 43694609 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042723 exon62 c.C9230T p.A3077V . . . RYR1 6261 broad.mit.edu 36 19 43768594 43768594 + Silent SNP C T T rs2302297 byHapMap TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042723 exon103 c.C14877T p.I4959I . . . SUPT5H 6829 broad.mit.edu 36 19 44656867 44656867 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003169 exon26 c.G2805A p.S935S . . . LGALS14 56891 broad.mit.edu 36 19 44889114 44889114 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020129 exon2 c.C53T p.S18L . . . CLC 1178 broad.mit.edu 36 19 44916804 44916804 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001828 exon3 c.G262T p.E88X . . . FCGBP 8857 broad.mit.edu 36 19 45100262 45100262 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A A A A Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_003890 exon8 c.T4417C p.S1473P . . . ZNF546 339327 broad.mit.edu 36 19 45213491 45213491 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178544 exon7 c.G2474T p.R825I . . . AKT2 208 broad.mit.edu 36 19 45432834 45432834 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001626 exon13 c.G1324T p.E442X . . . PLD3 23646 broad.mit.edu 36 19 45572321 45572321 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031696 exon10 c.G973A p.A325T . . . SPTBN4 57731 broad.mit.edu 36 19 45695250 45695250 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020971 exon7 c.A683G p.D228G . . . LTBP4 8425 broad.mit.edu 36 19 45825548 45825548 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001042545 exon29 c.A4464C p.S1488S . . . NUMBL 9253 broad.mit.edu 36 19 45878778 45878778 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004756 exon6 c.G424A p.E142K . . . HNRNPUL1 11100 broad.mit.edu 36 19 46479019 46479019 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144732 exon7 c.C698T p.A233V . . . CCDC97 90324 broad.mit.edu 36 19 46517422 46517422 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052848 exon3 c.C606T p.T202T . . . CEACAM4 1089 broad.mit.edu 36 19 46819946 46819946 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001817 exon3 c.G460A p.A154T . . . ATP1A3 478 broad.mit.edu 36 19 47165547 47165547 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152296 exon19 c.C2568A p.F856L . . . GRIK5 2901 broad.mit.edu 36 19 47249869 47249869 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002088 exon9 c.G1109A p.R370K . . . ZNF574 64763 broad.mit.edu 36 19 47277120 47277120 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022752 exon2 c.G2522A p.R841H . . . LIPE 3991 broad.mit.edu 36 19 47603688 47603688 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005357 exon5 c.G1752A p.T584T . . . CEACAM1 634 broad.mit.edu 36 19 47723085 47723085 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001712 exon2 c.C372A p.V124V . . . CEACAM8 1088 broad.mit.edu 36 19 47784927 47784927 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001816 exon4 c.T807C p.Y269Y . . . CEACAM8 1088 broad.mit.edu 36 19 47785018 47785018 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001816 exon4 c.C716T p.A239V . . . PSG3 5671 broad.mit.edu 36 19 47925259 47925259 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021016 exon5 c.A1099G p.T367A . . . PSG8 440533 broad.mit.edu 36 19 47950379 47950379 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130168 exon4 c.C823T p.R275C . . . PSG4 5672 broad.mit.edu 36 19 48390506 48390506 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002780 exon5 c.G1069A p.E357K . . . PSG4 5672 broad.mit.edu 36 19 48399928 48399928 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002780 exon2 c.G380A p.R127Q . . . PSG4 5672 broad.mit.edu 36 19 48400009 48400009 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002780 exon2 c.G299T p.R100I . . . PSG9 5678 broad.mit.edu 36 19 48458100 48458100 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002784 exon3 c.G461A p.S154N . . . KCNN4 3783 broad.mit.edu 36 19 48976737 48976737 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002250 exon1 c.C117A p.L39L . . . LYPD5 284348 broad.mit.edu 36 19 48995701 48995701 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182573 exon2 c.A61G p.T21A . . . ZNF283 284349 broad.mit.edu 36 19 49043403 49043403 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181845 exon7 c.G810A p.K270K . . . ZNF283 284349 broad.mit.edu 36 19 49044197 49044197 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181845 exon7 c.G1604A p.R535K . . . ZNF283 284349 broad.mit.edu 36 19 49044449 49044449 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181845 exon7 c.G1856T p.R619I . . . ZNF221 7638 broad.mit.edu 36 19 49162751 49162751 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013359 exon6 c.A1257C p.Q419H . . . ZNF222 7673 broad.mit.edu 36 19 49228221 49228221 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013360 exon4 c.G554A p.S185N . . . ZNF234 10780 broad.mit.edu 36 19 49352696 49352696 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006630 exon6 c.G687T p.E229D . . . ZNF227 7770 broad.mit.edu 36 19 49424512 49424512 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182490 exon4 c.G134T p.R45M . . . ZNF235 9310 broad.mit.edu 36 19 49483627 49483627 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004234 exon5 c.T1801C p.C601R . . . ZNF235 9310 broad.mit.edu 36 19 49483771 49483771 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004234 exon5 c.A1657C p.N553H . . . ZFP112 7771 broad.mit.edu 36 19 49523594 49523594 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013380 exon4 c.G2556T p.E852D . . . ZNF285 26974 broad.mit.edu 36 19 49584060 49584060 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152354 exon4 c.T187C p.L63L . . . ZNF180 7733 broad.mit.edu 36 19 49672772 49672772 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013256 exon5 c.G1766T p.S589I . . . ZNF180 7733 broad.mit.edu 36 19 49672955 49672955 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013256 exon5 c.A1583C p.K528T . . . CLASRP 11129 broad.mit.edu 36 19 50265936 50265936 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007056 exon21 c.G2018A p.R673Q . . . FOSB 2354 broad.mit.edu 36 19 50666335 50666335 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006732 exon3 c.G491A p.R164Q . . . EML2 24139 broad.mit.edu 36 19 50809728 50809728 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193269 exon20 c.T2109G p.T703T . . . GRLF1 2909 broad.mit.edu 36 19 52115048 52115048 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004491 exon1 c.G1276A p.E426K . . . GPR77 27202 broad.mit.edu 36 19 52536026 52536026 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018485 exon2 c.G130A p.A44T . . . SLC8A2 6543 broad.mit.edu 36 19 52652542 52652542 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015063 exon3 c.G797A p.S266N . . . EHD2 30846 broad.mit.edu 36 19 52931545 52931545 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014601 exon5 c.G1023T p.K341N . . . SULT2A1 6822 broad.mit.edu 36 19 53078668 53078668 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003167 exon2 c.C323A p.S108Y . . . CARD8 22900 broad.mit.edu 36 19 53406788 53406788 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014959 exon12 c.G1455T p.Q485H . . . ZNF114 163071 broad.mit.edu 36 19 53474873 53474873 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153608 exon3 c.C5T p.S2F . . . GRIN2D 2906 broad.mit.edu 36 19 53609644 53609644 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000836 exon5 c.G1403A p.R468Q . . . RASIP1 54922 broad.mit.edu 36 19 53919981 53919981 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017805 exon9 c.G2176A p.A726T . . . PPFIA3 8541 broad.mit.edu 36 19 54343261 54343261 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003660 exon24 c.G2945A p.R982Q . . . SIGLEC11 114132 broad.mit.edu 36 19 55147398 55147398 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001135163 exon8 c.C1429T p.L477F . . . SIGLEC11 114132 broad.mit.edu 36 19 55154136 55154136 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135163 exon6 c.G1068T p.E356D . . . ZNF473 25888 broad.mit.edu 36 19 55241344 55241344 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006656 exon5 c.G1832T p.R611I . . . SHANK1 50944 broad.mit.edu 36 19 55857217 55857217 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016148 exon23 c.C6303T p.F2101F . . . SHANK1 50944 broad.mit.edu 36 19 55881318 55881318 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016148 exon20 c.C2565A p.F855L . . . SAFB 6294 broad.mit.edu 36 19 5605190 5605190 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002967 exon12 c.C1645T p.R549X . . . KLK4 9622 broad.mit.edu 36 19 56103447 56103447 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004917 exon4 c.G592T p.D198Y . . . SIGLEC10 89790 broad.mit.edu 36 19 56608883 56608883 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171157 exon9 c.G1431A p.K477K . . . CEACAM18 729767 broad.mit.edu 36 19 56676702 56676702 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080405 exon4 c.G827T p.R276I . . . SIGLEC14 100049587 broad.mit.edu 36 19 56839096 56839096 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098612 exon5 c.C760T p.R254W . . . ZNF615 284370 broad.mit.edu 36 19 57188546 57188546 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198480 exon6 c.G1595A p.R532Q . . . ZNF615 284370 broad.mit.edu 36 19 57189749 57189749 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198480 exon6 c.A392G p.D131G . . . ZNF534 147658 broad.mit.edu 36 19 57633136 57633136 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001143939 exon4 c.G650A p.R217H . . . ZNF808 388558 broad.mit.edu 36 19 57750045 57750045 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039886 exon5 c.C2064T p.F688F . . . ZNF83 55769 broad.mit.edu 36 19 57809127 57809127 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105552 exon4 c.G503A p.R168H . . . ZNF611 81856 broad.mit.edu 36 19 57901532 57901532 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161501 exon5 c.T381G p.I127M . . . ZNF600 162966 broad.mit.edu 36 19 57961730 57961730 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198457 exon3 c.G1091T p.G364V . . . ZNF600 162966 broad.mit.edu 36 19 57961940 57961940 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198457 exon3 c.G881T p.R294I . . . ZNF28 7576 broad.mit.edu 36 19 57996558 57996558 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006969 exon4 c.G352T p.E118X . . . ZNF468 90333 broad.mit.edu 36 19 58035996 58035996 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199132 exon5 c.G1204A p.A402T . . . ZNF816 125893 broad.mit.edu 36 19 58145059 58145059 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031665 exon5 c.A1781C p.K594T . . . ZNF816 125893 broad.mit.edu 36 19 58146380 58146380 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031665 exon5 c.G460A p.D154N . . . ZNF765 91661 broad.mit.edu 36 19 58602904 58602904 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040185 exon4 c.A284G p.H95R . . . PRKCG 5582 broad.mit.edu 36 19 59093108 59093108 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002739 exon10 c.G1023A p.A341A . . . RPS9 6203 broad.mit.edu 36 19 59401983 59401983 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013 exon4 c.G248A p.R83H . . . LILRB5 10990 broad.mit.edu 36 19 59450538 59450538 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081442 exon6 c.A1127G p.H376R . . . LILRB2 10288 broad.mit.edu 36 19 59475958 59475958 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080978 exon3 c.C43A p.L15M . . . RFX2 5990 broad.mit.edu 36 19 5967273 5967273 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000635 exon7 c.C607T p.L203L . . . LILRB1 10859 broad.mit.edu 36 19 59834873 59834873 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081639 exon4 c.T181C p.Y61H . . . KIR2DL3 3804 broad.mit.edu 36 19 59947065 59947065 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015868 exon4 c.G381T p.E127D . . . KIR3DL2 3812 broad.mit.edu 36 19 60057226 60057226 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006737 exon4 c.G568T p.A190S . . . GP6 51206 broad.mit.edu 36 19 60217983 60217983 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001083899 exon8 c.G1142A p.R381Q . . . ZNF581 51545 broad.mit.edu 36 19 60848038 60848038 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016535 exon2 c.G289A p.E97K . . . NLRP9 338321 broad.mit.edu 36 19 60936120 60936120 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176820 exon2 c.G889T p.G297X . . . NLRP11 204801 broad.mit.edu 36 19 60988903 60988903 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145007 exon12 c.C3002A p.S1001X . . . NLRP11 204801 broad.mit.edu 36 19 61012715 61012715 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145007 exon5 c.A1073G p.D358G . . . NLRP4 147945 broad.mit.edu 36 19 61061168 61061168 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_134444 exon3 c.G597A p.T199T . . . NLRP13 126204 broad.mit.edu 36 19 61114987 61114987 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176810 exon5 c.G2008T p.E670X . . . NLRP8 126205 broad.mit.edu 36 19 61173874 61173874 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176811 exon6 c.C2534T p.S845L . . . NLRP5 126206 broad.mit.edu 36 19 61207001 61207001 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153447 exon2 c.C170T p.S57L . . . NLRP5 126206 broad.mit.edu 36 19 61230586 61230586 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153447 exon7 c.G1175A p.R392H . . . ACSBG2 81616 broad.mit.edu 36 19 6134180 6134180 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030924 exon10 c.G1219A p.E407K . . . ZNF582 147948 broad.mit.edu 36 19 61587362 61587362 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144690 exon5 c.A1236G p.V412V . . . ZNF667 63934 broad.mit.edu 36 19 61644594 61644594 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022103 exon5 c.A1582G p.T528A . . . ZNF471 57573 broad.mit.edu 36 19 61727702 61727702 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020813 exon5 c.A454G p.T152A . . . ZNF471 57573 broad.mit.edu 36 19 61728616 61728616 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020813 exon5 c.G1368T p.E456D . . . ZFP28 140612 broad.mit.edu 36 19 61757022 61757022 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020828 exon8 c.T1056C p.G352G . . . ZIM2 23619 broad.mit.edu 36 19 61978353 61978353 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146326 exon12 c.C1099A p.L367I . . . ZIM2 23619 broad.mit.edu 36 19 61978506 61978506 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146326 exon12 c.A946G p.T316A . . . PEG3 5178 broad.mit.edu 36 19 62019007 62019007 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146186 exon7 c.G2615A p.R872Q . . . USP29 57663 broad.mit.edu 36 19 62331929 62331929 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020903 exon4 c.C74T p.A25V . . . ZIM3 114026 broad.mit.edu 36 19 62338996 62338996 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052882 exon5 c.A521C p.K174T . . . AURKC 6795 broad.mit.edu 36 19 62438440 62438440 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003160 exon7 c.T671G p.F224C . . . ZNF304 57343 broad.mit.edu 36 19 62554855 62554855 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020657 exon1 c.C11T p.A4V . . . ZNF773 374928 broad.mit.edu 36 19 62710548 62710548 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198542 exon4 c.C1273T p.R425C . . . ZNF530 348327 broad.mit.edu 36 19 62810241 62810241 + Silent SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020880 exon3 c.T1536G p.V512V . . . ZSCAN4 201516 broad.mit.edu 36 19 62879575 62879575 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152677 exon3 c.A250G p.I84V . . . ZNF776 284309 broad.mit.edu 36 19 62957740 62957740 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173632 exon3 c.G1430A p.R477Q . . . ZNF552 79818 broad.mit.edu 36 19 63011588 63011588 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024762 exon3 c.C856T p.H286Y . . . ZNF418 147686 broad.mit.edu 36 19 63129781 63129781 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133460 exon4 c.G1580A p.R527Q . . . ZNF418 147686 broad.mit.edu 36 19 63130959 63130959 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133460 exon4 c.G402T p.E134D . . . ZNF606 80095 broad.mit.edu 36 19 63183018 63183018 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025027 exon7 c.G842T p.R281I . . . RPS5 6193 broad.mit.edu 36 19 63597744 63597744 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009 exon5 c.C516T p.C172C . . . ZNF132 7691 broad.mit.edu 36 19 63637778 63637778 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003433 exon3 c.A845C p.K282T . . . KHSRP 8570 broad.mit.edu 36 19 6367504 6367504 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003685 exon14 c.C1485T p.I495I . . . SLC27A5 10998 broad.mit.edu 36 19 63713132 63713132 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012254 exon3 c.G951T p.K317N . . . C3 718 broad.mit.edu 36 19 6629419 6629419 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000064 exon39 c.G4678A p.E1560K . . . VAV1 7409 broad.mit.edu 36 19 6787549 6787549 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005428 exon20 c.G1884A p.T628T . . . INSR 3643 broad.mit.edu 36 19 7093885 7093885 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000208 exon12 c.C2484T p.D828D . . . PNPLA6 10908 broad.mit.edu 36 19 7531590 7531590 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166111 exon31 c.C3786A p.V1262V . . . FBN3 84467 broad.mit.edu 36 19 8058995 8058995 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032447 exon51 c.G6445A p.E2149K . . . HNRNPM 4670 broad.mit.edu 36 19 8459661 8459661 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005968 exon16 c.G2116A p.E706K . . . ZNF699 374879 broad.mit.edu 36 19 9268378 9268378 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198535 exon5 c.T702G p.F234L . . . ZNF266 10781 broad.mit.edu 36 19 9385570 9385570 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006631 exon11 c.G1031A p.R344Q . . . ZNF426 79088 broad.mit.edu 36 19 9500822 9500822 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024106 exon8 c.G899A p.R300Q . . . ZNF121 7675 broad.mit.edu 36 19 9538130 9538130 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008727 exon4 c.G659A p.R220Q . . . ZNF121 7675 broad.mit.edu 36 19 9538364 9538364 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008727 exon4 c.A425C p.K142T . . . ZNF846 162993 broad.mit.edu 36 19 9729764 9729764 + Missense_Mutation SNP C T T rs60387559 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077624 exon6 c.G989A p.R330Q . . . AGL 178 broad.mit.edu 36 1 100100561 100100561 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000645 exon2 c.G403T p.E135X . . . CDC14A 8556 broad.mit.edu 36 1 100700809 100700809 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033312 exon9 c.G622A p.A208T . . . VCAM1 7412 broad.mit.edu 36 1 100969620 100969620 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199834 exon6 c.G1297A p.E433K . . . VCAM1 7412 broad.mit.edu 36 1 100976414 100976414 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199834 exon9 c.A2021C p.K674T . . . OLFM3 118427 broad.mit.edu 36 1 102063191 102063191 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058170 exon4 c.C571T p.R191C . . . KIF1B 23095 broad.mit.edu 36 1 10285832 10285832 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183416 exon21 c.G2002A p.D668N . . . COL11A1 1301 broad.mit.edu 36 1 103128647 103128647 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001854 exon58 c.G4304A p.G1435E . . . CASZ1 54897 broad.mit.edu 36 1 10638350 10638350 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079843 exon9 c.C1608T p.S536S . . . VAV3 10451 broad.mit.edu 36 1 107947271 107947271 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006113 exon23 c.G2053A p.E685K . . . VAV3 10451 broad.mit.edu 36 1 108093169 108093169 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006113 exon15 c.T1446G p.F482L . . . SLC25A24 29957 broad.mit.edu 36 1 108480934 108480934 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013386 exon10 c.G1298A p.R433Q . . . PRPF38B 55119 broad.mit.edu 36 1 109043626 109043626 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018061 exon6 c.C1102T p.R368C . . . CELSR2 1952 broad.mit.edu 36 1 109596929 109596929 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001408 exon1 c.G2705A p.R902H . . . MYBPHL 343263 broad.mit.edu 36 1 109641040 109641040 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010985 exon5 c.C618A p.V206V . . . SYPL2 284612 broad.mit.edu 36 1 109822088 109822088 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040709 exon5 c.C582A p.C194X . . . GPR61 83873 broad.mit.edu 36 1 109887351 109887351 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031936 exon2 c.G184A p.A62T . . . GNAT2 2780 broad.mit.edu 36 1 109950561 109950561 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005272 exon5 c.G482A p.R161Q . . . GSTM2 2946 broad.mit.edu 36 1 110015516 110015516 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000848 exon6 c.C445A p.L149I . . . FAM40A 85369 broad.mit.edu 36 1 110395881 110395881 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033088 exon20 c.A2115C p.K705N . . . EXOSC10 5394 broad.mit.edu 36 1 11059496 11059496 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001998 exon17 c.C1976T p.T659M . . . MTOR 2475 broad.mit.edu 36 1 11097043 11097043 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004958 exon53 c.C7219T p.L2407L . . . MTOR 2475 broad.mit.edu 36 1 11196141 11196141 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004958 exon21 c.C3187T p.L1063F . . . CTTNBP2NL 55917 broad.mit.edu 36 1 112800563 112800563 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018704 exon6 c.C926T p.S309F . . . MAGI3 260425 broad.mit.edu 36 1 113986057 113986057 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152900 exon10 c.C1362T p.G454G . . . HIPK1 204851 broad.mit.edu 36 1 114284902 114284902 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198268 exon2 c.G374A p.R125Q . . . OLFML3 56944 broad.mit.edu 36 1 114324603 114324603 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020190 exon2 c.G241A p.D81N . . . OLFML3 56944 broad.mit.edu 36 1 114325820 114325820 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020190 exon3 c.G1127A p.R376H . . . DENND2C 163259 broad.mit.edu 36 1 114969720 114969720 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198459 exon2 c.T409G p.S137A . . . AMPD1 270 broad.mit.edu 36 1 115017319 115017319 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000036 exon16 c.G2282A p.R761H . . . CSDE1 7812 broad.mit.edu 36 1 115069471 115069471 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130523 exon15 c.C1692A p.F564L . . . PTCHD2 57540 broad.mit.edu 36 1 11517750 11517750 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020780 exon19 c.G3631A p.V1211M . . . SLC22A15 55356 broad.mit.edu 36 1 116371040 116371040 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018420 exon5 c.C602T p.S201L . . . C1orf161 126868 broad.mit.edu 36 1 116472354 116472354 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152367 exon6 c.G726A p.E242E . . . CD101 9398 broad.mit.edu 36 1 117362469 117362469 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004258 exon6 c.G1781A p.R594Q . . . VTCN1 79679 broad.mit.edu 36 1 117500945 117500945 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024626 exon3 c.G219A p.K73K . . . WDR3 10885 broad.mit.edu 36 1 118301281 118301281 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006784 exon25 c.G2521A p.E841K . . . SPAG17 200162 broad.mit.edu 36 1 118317615 118317615 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206996 exon44 c.C6097A p.H2033N . . . SPAG17 200162 broad.mit.edu 36 1 118383447 118383447 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206996 exon23 c.C3310A p.L1104I . . . HSD3B1 3283 broad.mit.edu 36 1 119858497 119858497 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000862 exon4 c.C828T p.F276F . . . AADACL3 126767 broad.mit.edu 36 1 12707859 12707859 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103169 exon3 c.A152G p.D51G . . . PRAMEF1 65121 broad.mit.edu 36 1 12778195 12778195 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023013 exon4 c.G888T p.E296D . . . HNRNPCL1 343069 broad.mit.edu 36 1 12830231 12830231 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013631 exon2 c.C499T p.R167W . . . PRAMEF8 391002 broad.mit.edu 36 1 12902448 12902448 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012277 exon3 c.G1053T p.Q351H . . . PRDM2 7799 broad.mit.edu 36 1 13931897 13931897 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012231 exon4 c.A164C p.K55T . . . ITGA10 8515 broad.mit.edu 36 1 144236437 144236437 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003637 exon1 c.C15T p.F5F . . . ITGA10 8515 broad.mit.edu 36 1 144248799 144248799 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003637 exon20 c.C2452T p.R818X . . . ANKRD35 148741 broad.mit.edu 36 1 144272269 144272269 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144698 exon9 c.G769T p.D257Y . . . TARS2 80222 broad.mit.edu 36 1 148743481 148743481 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025150 exon14 c.G1664T p.G555V . . . FAM63A 55793 broad.mit.edu 36 1 149241276 149241276 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018379 exon3 c.C442A p.L148I . . . FLG 2312 broad.mit.edu 36 1 150552463 150552463 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002016 exon3 c.C1523T p.A508V . . . FLG2 388698 broad.mit.edu 36 1 150592707 150592707 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014342 exon3 c.A4179G p.G1393G . . . FLG2 388698 broad.mit.edu 36 1 150596324 150596324 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014342 exon3 c.C562A p.H188N . . . LCE2A 353139 broad.mit.edu 36 1 150938154 150938154 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178428 exon2 c.C153T p.C51C . . . KPRP 448834 broad.mit.edu 36 1 150999054 150999054 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025231 exon2 c.C366T p.C122C . . . LCE1F 353137 broad.mit.edu 36 1 151015648 151015648 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178354 exon1 c.C177T p.C59C . . . S100A7 6278 broad.mit.edu 36 1 151698000 151698000 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002963 exon2 c.G114T p.E38D . . . CRTC2 200186 broad.mit.edu 36 1 152193358 152193358 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_181715 exon4 c.G431A p.R144Q . . . TPM3 7170 broad.mit.edu 36 1 152430369 152430369 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152263 exon2 c.A160G p.T54A . . . CHRNB2 1141 broad.mit.edu 36 1 152809418 152809418 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000748 exon4 c.C316T p.R106W . . . EFNA4 1945 broad.mit.edu 36 1 153308069 153308069 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005227 exon4 c.C586T p.R196C . . . ASH1L 55870 broad.mit.edu 36 1 153579810 153579810 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018489 exon24 c.C8212T p.R2738W . . . ASH1L 55870 broad.mit.edu 36 1 153584140 153584140 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018489 exon20 c.C7734T p.D2578D . . . GON4L 54856 broad.mit.edu 36 1 154002841 154002841 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032292 exon21 c.T3047C p.F1016S . . . RXFP4 339403 broad.mit.edu 36 1 154178163 154178163 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181885 exon1 c.C39A p.F13L . . . ARHGEF2 9181 broad.mit.edu 36 1 154201750 154201750 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162383 exon6 c.G548A p.R183Q . . . SEMA4A 64218 broad.mit.edu 36 1 154413356 154413356 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022367 exon15 c.A2230G p.T744A . . . SMG5 23381 broad.mit.edu 36 1 154514372 154514372 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015327 exon3 c.G265T p.E89X . . . IQGAP3 128239 broad.mit.edu 36 1 154777206 154777206 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178229 exon23 c.G2657A p.R886Q . . . IQGAP3 128239 broad.mit.edu 36 1 154800056 154800056 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_178229 exon7 c.G532A p.E178K . . . C1orf92 149499 broad.mit.edu 36 1 155166072 155166072 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144702 exon11 c.G1167T p.E389D . . . ARHGEF11 9826 broad.mit.edu 36 1 155183098 155183098 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198236 exon28 c.C2674T p.R892X . . . FCRL5 83416 broad.mit.edu 36 1 155783586 155783586 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031281 exon3 c.C78A p.F26L . . . OR10Z1 128368 broad.mit.edu 36 1 156843158 156843158 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004478 exon1 c.C306A p.F102L . . . SPTA1 6708 broad.mit.edu 36 1 156874571 156874571 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003126 exon36 c.G5065T p.D1689Y . . . SPTA1 6708 broad.mit.edu 36 1 156893032 156893032 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003126 exon20 c.C2844T p.L948L . . . SPTA1 6708 broad.mit.edu 36 1 156919893 156919893 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003126 exon3 c.T282G p.H94Q . . . OR6K6 128371 broad.mit.edu 36 1 156991440 156991440 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005184 exon1 c.C211A p.L71I . . . OR6N1 128372 broad.mit.edu 36 1 157002306 157002306 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005185 exon1 c.A791G p.K264R . . . OR6N1 128372 broad.mit.edu 36 1 157002590 157002590 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005185 exon1 c.T507C p.C169C . . . OR6N2 81442 broad.mit.edu 36 1 157013809 157013809 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005278 exon1 c.A241C p.M81L . . . MNDA 4332 broad.mit.edu 36 1 157078587 157078587 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002432 exon2 c.A20C p.K7T . . . CADM3 57863 broad.mit.edu 36 1 157436209 157436209 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021189 exon9 c.A1099G p.I367V . . . OR10J3 441911 broad.mit.edu 36 1 157550232 157550232 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004467 exon1 c.A842G p.H281R . . . OR10J1 26476 broad.mit.edu 36 1 157676686 157676686 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012351 exon1 c.A514G p.T172A . . . CCDC19 25790 broad.mit.edu 36 1 158113046 158113046 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012337 exon10 c.G1276A p.E426K . . . ATP1A2 477 broad.mit.edu 36 1 158373418 158373418 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000702 exon20 c.G2813A p.R938H . . . ATP1A4 480 broad.mit.edu 36 1 158418430 158418430 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144699 exon20 c.G2954A p.R985Q . . . SLAMF1 6504 broad.mit.edu 36 1 158883327 158883327 + Silent SNP G A A rs2295612 byCluster;byFrequency;byHapMap TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003037 exon1 c.C33T p.F11F . . . CD48 962 broad.mit.edu 36 1 158917758 158917758 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001778 exon3 c.G510A p.R170R . . . LY9 4063 broad.mit.edu 36 1 159064186 159064186 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002348 exon10 c.G1924T p.D642Y . . . F11R 50848 broad.mit.edu 36 1 159235464 159235464 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_016946 exon9 c.G857A p.R286Q . . . B4GALT3 8703 broad.mit.edu 36 1 159408648 159408648 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199874 exon7 c.C901T p.P301S . . . TOMM40L 84134 broad.mit.edu 36 1 159464077 159464077 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032174 exon5 c.G304A p.D102N . . . SPEN 23013 broad.mit.edu 36 1 16135058 16135058 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A C Unknown Valid Germline Phase_I Capture Illumina Illumina HiSeq NM_015001 exon11 c.A9736C p.T3246P . . . HSPB7 27129 broad.mit.edu 36 1 16216174 16216174 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014424 exon2 c.C315T p.I105I . . . MAEL 84944 broad.mit.edu 36 1 165257619 165257619 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032858 exon12 c.C1208T p.S403F . . . DUSP27 92235 broad.mit.edu 36 1 165330801 165330801 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080426 exon1 c.C91T p.R31X . . . ADCY10 55811 broad.mit.edu 36 1 166081617 166081617 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167749 exon18 c.G2356A p.E786K . . . ADCY10 55811 broad.mit.edu 36 1 166095675 166095675 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167749 exon13 c.G1431A p.L477L . . . DCAF6 55827 broad.mit.edu 36 1 166304230 166304230 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198957 exon20 c.G2603A p.R868Q . . . SLC19A2 10560 broad.mit.edu 36 1 167703987 167703987 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006996 exon5 c.G1351T p.E451X . . . F5 2153 broad.mit.edu 36 1 167765613 167765613 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000130 exon16 c.A5276G p.D1759G . . . F5 2153 broad.mit.edu 36 1 167772409 167772409 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000130 exon14 c.C4930A p.L1644I . . . F5 2153 broad.mit.edu 36 1 167776694 167776694 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000130 exon13 c.C4258A p.L1420I . . . SELP 6403 broad.mit.edu 36 1 167848211 167848211 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003005 exon6 c.C829A p.H277N . . . SELE 6401 broad.mit.edu 36 1 167966301 167966301 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000450 exon5 c.C611A p.S204Y . . . SCYL3 57147 broad.mit.edu 36 1 168124563 168124563 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181093 exon2 c.G43T p.E15X . . . C1orf129 80133 broad.mit.edu 36 1 169201017 169201017 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025063 exon7 c.A477G p.K159K . . . FMO3 2328 broad.mit.edu 36 1 169339711 169339711 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002294 exon3 c.G294T p.K98N . . . FMO3 2328 broad.mit.edu 36 1 169349926 169349926 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002294 exon7 c.C983T p.A328V . . . FMO2 2327 broad.mit.edu 36 1 169429206 169429206 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001460 exon3 c.T241G p.F81V . . . FMO4 2329 broad.mit.edu 36 1 169567531 169567531 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002022 exon6 c.C613T p.R205X . . . FMO4 2329 broad.mit.edu 36 1 169570344 169570344 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002022 exon8 c.C998A p.S333Y . . . DNM3 26052 broad.mit.edu 36 1 170489419 170489419 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015569 exon15 c.C1743T p.I581I . . . SLC9A11 284525 broad.mit.edu 36 1 171769555 171769555 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178527 exon17 c.T1979A p.I660K . . . SLC9A11 284525 broad.mit.edu 36 1 171837457 171837457 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178527 exon2 c.G82A p.E28K . . . TNN 63923 broad.mit.edu 36 1 173352727 173352727 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022093 exon10 c.G2149A p.D717N . . . TNN 63923 broad.mit.edu 36 1 173363796 173363796 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022093 exon14 c.G3051A p.M1017I . . . TNR 7143 broad.mit.edu 36 1 173601801 173601801 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003285 exon11 c.G2150A p.R717Q . . . PAPPA2 60676 broad.mit.edu 36 1 175001582 175001582 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020318 exon15 c.A4309G p.I1437V . . . ASTN1 460 broad.mit.edu 36 1 175259169 175259169 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004319 exon7 c.G1432A p.E478K . . . ASTN1 460 broad.mit.edu 36 1 175265487 175265487 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004319 exon5 c.C1026T p.F342F . . . FAM5B 57795 broad.mit.edu 36 1 175511993 175511993 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021165 exon6 c.G812A p.R271H . . . FAM5B 57795 broad.mit.edu 36 1 175512045 175512045 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021165 exon6 c.C864T p.L288L . . . PADI6 353238 broad.mit.edu 36 1 17593133 17593133 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207421 exon10 c.G1151A p.R384Q . . . SEC16B 89866 broad.mit.edu 36 1 176169372 176169372 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033127 exon21 c.G2594A p.R865Q . . . TOR1AIP1 26092 broad.mit.edu 36 1 178153307 178153307 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015602 exon10 c.C1062A p.F354L TOR1AIP1,central_nervous_system,brain,Substitution - coding silent,0 . . CEP350 9857 broad.mit.edu 36 1 178232513 178232513 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014810 exon6 c.C598T p.R200X . . . CEP350 9857 broad.mit.edu 36 1 178331797 178331797 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014810 exon36 c.C8921T p.A2974V . . . QSOX1 5768 broad.mit.edu 36 1 178425402 178425402 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002826 exon9 c.C1110A p.F370L . . . XPR1 9213 broad.mit.edu 36 1 179041842 179041842 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135669 exon5 c.C469T p.R157X . . . MR1 3140 broad.mit.edu 36 1 179284880 179284880 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001531 exon3 c.C137T p.S46L . . . MR1 3140 broad.mit.edu 36 1 179288238 179288238 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001531 exon5 c.C849T p.C283C . . . MR1 3140 broad.mit.edu 36 1 179289342 179289342 + Silent SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001531 exon6 c.T891G p.T297T . . . CACNA1E 777 broad.mit.edu 36 1 179946815 179946815 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000721 exon8 c.G1158T p.W386C . . . CACNA1E 777 broad.mit.edu 36 1 179951878 179951878 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000721 exon10 c.C1305T p.I435I . . . CACNA1E 777 broad.mit.edu 36 1 179991145 179991145 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000721 exon28 c.G3978A p.E1326E . . . ACTL8 81569 broad.mit.edu 36 1 18022256 18022256 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030812 exon2 c.G166T p.D56Y . . . LAMC2 3918 broad.mit.edu 36 1 181461395 181461395 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018891 exon8 c.G983A p.S328N . . . LAMC2 3918 broad.mit.edu 36 1 181463345 181463345 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018891 exon10 c.C1358T p.P453L . . . SMG7 9887 broad.mit.edu 36 1 181776810 181776810 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174061 exon12 c.G1238A p.R413Q . . . FAM129A 116496 broad.mit.edu 36 1 183043836 183043836 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052966 exon10 c.C1330T p.Q444X . . . IVNS1ABP 10625 broad.mit.edu 36 1 183533807 183533807 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006469 exon15 c.A1912C p.K638Q . . . HMCN1 83872 broad.mit.edu 36 1 184101498 184101498 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031935 exon4 c.C501T p.V167V . . . HMCN1 83872 broad.mit.edu 36 1 184226095 184226095 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon22 c.C3274A p.L1092I . . . HMCN1 83872 broad.mit.edu 36 1 184275548 184275548 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon39 c.G6094T p.E2032X . . . HMCN1 83872 broad.mit.edu 36 1 184326569 184326569 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon64 c.G9784A p.E3262K . . . TPR 7175 broad.mit.edu 36 1 184556171 184556171 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003292 exon46 c.C6464T p.S2155L . . . TPR 7175 broad.mit.edu 36 1 184582009 184582009 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003292 exon23 c.C2977T p.R993C . . . PDC 5132 broad.mit.edu 36 1 184680112 184680112 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002597 exon4 c.G363C p.K121N . . . PTGS2 5743 broad.mit.edu 36 1 184913578 184913578 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000963 exon5 c.G465T p.K155N . . . PLA2G4A 5321 broad.mit.edu 36 1 185129935 185129935 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024420 exon5 c.A347C p.E116A . . . PLA2G4A 5321 broad.mit.edu 36 1 185168541 185168541 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024420 exon8 c.T582C p.G194G . . . PLA2G4A 5321 broad.mit.edu 36 1 185174827 185174827 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024420 exon9 c.G760A p.E254K . . . TAS1R2 80834 broad.mit.edu 36 1 19039498 19039498 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152232 exon6 c.G1702A p.A568T . . . KIAA1751 85452 broad.mit.edu 36 1 1912220 1912220 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080484 exon2 c.G36A p.E12E . . . B3GALT2 8707 broad.mit.edu 36 1 191416756 191416756 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003783 exon2 c.G560T p.R187I . . . UBR4 23352 broad.mit.edu 36 1 19313112 19313112 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020765 exon76 c.C11242T p.R3748X . . . UBR4 23352 broad.mit.edu 36 1 19344896 19344896 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020765 exon53 c.C7923T p.F2641F . . . KCNT2 343450 broad.mit.edu 36 1 194728025 194728025 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198503 exon2 c.C165A p.N55K . . . CFH 3075 broad.mit.edu 36 1 194961029 194961029 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000186 exon12 c.C1852A p.P618T . . . ASPM 259266 broad.mit.edu 36 1 195339995 195339995 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018136 exon18 c.T5009C p.V1670A . . . ASPM 259266 broad.mit.edu 36 1 195365797 195365797 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018136 exon8 c.G2500T p.E834X . . . ASPM 259266 broad.mit.edu 36 1 195379087 195379087 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018136 exon3 c.G918T p.L306F . . . CRB1 23418 broad.mit.edu 36 1 195663385 195663385 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201253 exon7 c.C2307T p.R769R . . . DENND1B 163486 broad.mit.edu 36 1 195788800 195788800 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195215 exon16 c.G1215T p.E405D . . . PTPRC 5788 broad.mit.edu 36 1 196988087 196988087 + Silent SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080921 exon27 c.T2805G p.T935T . . . PTPRC 5788 broad.mit.edu 36 1 196988360 196988360 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080921 exon28 c.A2856G p.R952R . . . ZNF281 23528 broad.mit.edu 36 1 198644760 198644760 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012482 exon2 c.G697A p.A233T . . . GPR25 2848 broad.mit.edu 36 1 199109538 199109538 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005298 exon1 c.G750A p.E250E . . . KDM5B 10765 broad.mit.edu 36 1 200967635 200967635 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006618 exon24 c.G3965A p.R1322K . . . CHI3L1 1116 broad.mit.edu 36 1 201419474 201419474 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001276 exon5 c.G383A p.R128H . . . CHIT1 1118 broad.mit.edu 36 1 201455017 201455017 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003465 exon9 c.C979T p.R327W . . . ATP2B4 493 broad.mit.edu 36 1 201935290 201935290 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001396 exon4 c.C471A p.F157L . . . REN 5972 broad.mit.edu 36 1 202392489 202392489 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000537 exon7 c.G757A p.E253K . . . NFASC 23114 broad.mit.edu 36 1 203209146 203209146 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160331 exon10 c.G1288A p.A430T . . . NFASC 23114 broad.mit.edu 36 1 203233151 203233151 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005388 exon25 c.G3013A p.E1005K . . . RBBP5 5929 broad.mit.edu 36 1 203330709 203330709 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005057 exon13 c.G1503A p.P501P . . . PLA2G2F 64600 broad.mit.edu 36 1 20342603 20342603 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022819 exon3 c.T247C p.S83P . . . PM20D1 148811 broad.mit.edu 36 1 204080581 204080581 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152491 exon4 c.C557A p.S186Y . . . C1orf186 440712 broad.mit.edu 36 1 204406810 204406810 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007544 exon5 c.G265A p.D89N . . . IKBKE 9641 broad.mit.edu 36 1 204718157 204718157 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193322 exon9 c.G844T p.A282S . . . RASSF5 83593 broad.mit.edu 36 1 204797632 204797632 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182665 exon1 c.A108C p.K36N . . . MAPKAPK2 9261 broad.mit.edu 36 1 204969041 204969041 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032960 exon3 c.G458A p.R153Q . . . IL10 3586 broad.mit.edu 36 1 205010932 205010932 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000572 exon3 c.G321A p.A107A . . . IL10 3586 broad.mit.edu 36 1 205012377 205012377 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000572 exon1 c.C27T p.C9C . . . CR2 1380 broad.mit.edu 36 1 205713039 205713039 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006658 exon10 c.G1870T p.D624Y . . . PLXNA2 5362 broad.mit.edu 36 1 206273303 206273303 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025179 exon28 c.G5039A p.R1680Q . . . TRAF3IP3 80342 broad.mit.edu 36 1 208015371 208015371 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025228 exon10 c.A829C p.N277H . . . TRAF3IP3 80342 broad.mit.edu 36 1 208018137 208018137 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025228 exon13 c.G1248A p.L416L . . . SYT14 255928 broad.mit.edu 36 1 208340320 208340320 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153262 exon6 c.G1055A p.R352H . . . KCNH1 3756 broad.mit.edu 36 1 209015344 209015344 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002238 exon10 c.A2000G p.N667S . . . RCOR3 55758 broad.mit.edu 36 1 209552783 209552783 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136223 exon11 c.C1174T p.R392W . . . INTS7 25896 broad.mit.edu 36 1 210215327 210215327 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199809 exon12 c.A1472G p.D491G . . . EIF4G3 8672 broad.mit.edu 36 1 21059552 21059552 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003760 exon19 c.G2989A p.E997K . . . PPP2R5A 5525 broad.mit.edu 36 1 210597155 210597155 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199756 exon11 c.G961A p.E321K . . . PTPN14 5784 broad.mit.edu 36 1 212609647 212609647 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005401 exon17 c.G3047A p.R1016Q . . . USH2A 7399 broad.mit.edu 36 1 213890714 213890714 + Missense_Mutation SNP C A A rs12085362 byHapMap TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon65 c.G14186T p.R4729I . . . USH2A 7399 broad.mit.edu 36 1 213920167 213920167 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon62 c.C12241T p.R4081W . . . USH2A 7399 broad.mit.edu 36 1 214486925 214486925 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon13 c.A2434G p.T812A . . . GPATCH2 55105 broad.mit.edu 36 1 215859914 215859914 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018040 exon2 c.G607T p.E203X . . . TGFB2 7042 broad.mit.edu 36 1 216586777 216586777 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003238 exon1 c.C111T p.I37I . . . EPRS 2058 broad.mit.edu 36 1 218219481 218219481 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004446 exon27 c.A3811C p.N1271H . . . EPRS 2058 broad.mit.edu 36 1 218264329 218264329 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004446 exon8 c.G843T p.E281D . . . BPNT1 10380 broad.mit.edu 36 1 218298946 218298946 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006085 exon9 c.G790A p.D264N . . . MARK1 4139 broad.mit.edu 36 1 218875887 218875887 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018650 exon13 c.G1366T p.D456Y . . . HSPG2 3339 broad.mit.edu 36 1 22040649 22040649 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005529 exon70 c.G9298A p.A3100T . . . HHIPL2 79802 broad.mit.edu 36 1 220783512 220783512 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024746 exon2 c.A964C p.K322Q . . . MIA3 375056 broad.mit.edu 36 1 220868809 220868809 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198551 exon4 c.G1624A p.E542K . . . MIA3 375056 broad.mit.edu 36 1 220872177 220872177 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198551 exon5 c.G3217T p.E1073X . . . MIA3 375056 broad.mit.edu 36 1 220905306 220905306 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198551 exon28 c.G5446T p.E1816X . . . DISP1 84976 broad.mit.edu 36 1 221243189 221243189 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032890 exon8 c.C1827T p.F609F . . . CAPN2 824 broad.mit.edu 36 1 222001374 222001374 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001748 exon5 c.G613A p.E205K . . . CAPN2 824 broad.mit.edu 36 1 222009820 222009820 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001748 exon10 c.A1151G p.N384S . . . TP53BP2 7159 broad.mit.edu 36 1 222050560 222050560 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031685 exon13 c.G2304A p.M768I . . . WDR26 80232 broad.mit.edu 36 1 222685874 222685874 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025160 exon3 c.A555G p.L185L . . . TMEM63A 9725 broad.mit.edu 36 1 224126349 224126349 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014698 exon5 c.G294A p.S98S . . . ZNF678 339500 broad.mit.edu 36 1 225909512 225909512 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178549 exon4 c.G1103T p.R368I . . . OBSCN 84033 broad.mit.edu 36 1 226536263 226536263 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052843 exon31 c.A8204G p.H2735R . . . OBSCN 84033 broad.mit.edu 36 1 226547712 226547712 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052843 exon41 c.G10903A p.E3635K . . . C1orf96 126731 broad.mit.edu 36 1 227529252 227529252 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145257 exon3 c.G492A p.R164R . . . NUP133 55746 broad.mit.edu 36 1 227698367 227698367 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018230 exon7 c.G870A p.T290T . . . C1QC 714 broad.mit.edu 36 1 22846545 22846545 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172369 exon3 c.C420A p.F140L . . . TSNAX 7257 broad.mit.edu 36 1 229767149 229767149 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005999 exon6 c.T748G p.L250V . . . DISC1 27185 broad.mit.edu 36 1 230020721 230020721 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164539 exon9 c.G1816A p.D606N . . . SIPA1L2 57568 broad.mit.edu 36 1 230682052 230682052 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020808 exon5 c.G2029A p.E677K . . . SIPA1L2 57568 broad.mit.edu 36 1 230716802 230716802 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020808 exon1 c.G907A p.E303K . . . PCNXL2 80003 broad.mit.edu 36 1 231298200 231298200 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014801 exon22 c.C3870T p.V1290V . . . KDM1A 23028 broad.mit.edu 36 1 23255030 23255030 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009999 exon7 c.T902G p.V301G . . . ARID4B 51742 broad.mit.edu 36 1 233411594 233411594 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031371 exon19 c.C3005T p.S1002L . . . TBCE 6905 broad.mit.edu 36 1 233678620 233678620 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079515 exon17 c.G1504T p.E502X . . . LYST 1130 broad.mit.edu 36 1 233987260 233987260 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000081 exon24 c.A7003G p.T2335A . . . NID1 4811 broad.mit.edu 36 1 234207802 234207802 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002508 exon20 c.C3732T p.I1244I . . . NID1 4811 broad.mit.edu 36 1 234255859 234255859 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002508 exon8 c.C1944A p.I648I . . . ERO1LB 56605 broad.mit.edu 36 1 234499832 234499832 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019891 exon2 c.A188C p.K63T . . . HEATR1 55127 broad.mit.edu 36 1 234806211 234806211 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018072 exon22 c.T3015G p.S1005R . . . ACTN2 88 broad.mit.edu 36 1 234969248 234969248 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103 exon10 c.G900A p.T300T . . . ACTN2 88 broad.mit.edu 36 1 234992431 234992431 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103 exon21 c.G2574A p.Q858Q . . . ZNF436 80818 broad.mit.edu 36 1 23561370 23561370 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030634 exon3 c.C1092T p.C364C . . . RYR2 6262 broad.mit.edu 36 1 235653148 235653148 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon12 c.G982A p.A328T . . . RYR2 6262 broad.mit.edu 36 1 235870865 235870865 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon47 c.G7161A p.A2387A . . . RYR2 6262 broad.mit.edu 36 1 235881384 235881384 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon51 c.A7784G p.D2595G . . . RYR2 6262 broad.mit.edu 36 1 235885831 235885831 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon53 c.T8053G p.Y2685D . . . RYR2 6262 broad.mit.edu 36 1 235904045 235904045 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon59 c.C8617T p.P2873S . . . KMO 8564 broad.mit.edu 36 1 239780963 239780963 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003679 exon4 c.C308A p.S103Y . . . KMO 8564 broad.mit.edu 36 1 239818722 239818722 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003679 exon12 c.G1065A p.A355A . . . WDR64 128025 broad.mit.edu 36 1 239941785 239941785 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144625 exon8 c.G1003A p.A335T . . . C1orf101 257044 broad.mit.edu 36 1 242835635 242835635 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173807 exon18 c.C2319T p.G773G . . . EFCAB2 84288 broad.mit.edu 36 1 243313610 243313610 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143943 exon6 c.G370T p.E124X . . . KIF26B 55083 broad.mit.edu 36 1 243832517 243832517 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018012 exon6 c.C1366T p.R456C . . . ZNF670 93474 broad.mit.edu 36 1 245267822 245267822 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033213 exon4 c.G722A p.R241H . . . NLRP3 114548 broad.mit.edu 36 1 245654982 245654982 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004895 exon3 c.G1614T p.E538D . . . OR13G1 441933 broad.mit.edu 36 1 245902218 245902218 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005487 exon1 c.C749A p.S250Y . . . OR13G1 441933 broad.mit.edu 36 1 245902636 245902636 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005487 exon1 c.C331A p.L111I . . . OR2L3 391192 broad.mit.edu 36 1 246291120 246291120 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004687 exon1 c.G514A p.A172T . . . OR2L13 284521 broad.mit.edu 36 1 246329376 246329376 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175911 exon3 c.C76A p.L26I . . . OR2M4 26245 broad.mit.edu 36 1 246469556 246469556 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017504 exon1 c.C703T p.R235C . . . OR2T33 391195 broad.mit.edu 36 1 246503498 246503498 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004695 exon1 c.C242G p.A81G . . . OR2T1 26696 broad.mit.edu 36 1 246637022 246637022 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030904 exon1 c.C1104A p.V368V . . . OR2G6 391211 broad.mit.edu 36 1 246751852 246751852 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013355 exon1 c.C282T p.Y94Y . . . ZNF692 55657 broad.mit.edu 36 1 247114769 247114769 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193328 exon9 c.G1008A p.K336K . . . ARID1A 8289 broad.mit.edu 36 1 26966878 26966878 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006015 exon11 c.C2999A p.S1000Y . . . RPA2 6118 broad.mit.edu 36 1 28113210 28113210 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002946 exon2 c.C68T p.S23F . . . PHACTR4 65979 broad.mit.edu 36 1 28690855 28690855 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023923 exon11 c.A2015C p.K672T . . . MATN1 4146 broad.mit.edu 36 1 30962272 30962272 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002379 exon4 c.G742A p.A248T . . . LAPTM5 7805 broad.mit.edu 36 1 30979310 30979310 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006762 exon8 c.G741A p.S247S . . . SPOCD1 90853 broad.mit.edu 36 1 32032398 32032398 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144569 exon11 c.G2297A p.S766N . . . KPNA6 23633 broad.mit.edu 36 1 32408130 32408130 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012316 exon13 c.G1305A p.S435S . . . FAM167B 84734 broad.mit.edu 36 1 32485776 32485776 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032648 exon1 c.G167A p.R56H . . . LCK 3932 broad.mit.edu 36 1 32514558 32514558 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042771 exon8 c.G665A p.R222H . . . PHC2 1912 broad.mit.edu 36 1 33593164 33593164 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198040 exon7 c.C1254T p.G418G . . . DLGAP3 58512 broad.mit.edu 36 1 35143068 35143068 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080418 exon1 c.C504A p.S168R . . . ZMYM6 9204 broad.mit.edu 36 1 35249187 35249187 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007167 exon9 c.C1100T p.A367V . . . ZMYM4 9202 broad.mit.edu 36 1 35597400 35597400 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005095 exon3 c.G373T p.E125X . . . CLSPN 63967 broad.mit.edu 36 1 36002865 36002865 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190481 exon3 c.A171C p.K57N . . . EIF2C4 192670 broad.mit.edu 36 1 36055135 36055135 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017629 exon2 c.C85T p.R29X . . . EIF2C1 26523 broad.mit.edu 36 1 36131370 36131370 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012199 exon4 c.G416A p.R139Q . . . MTF1 4520 broad.mit.edu 36 1 38076911 38076911 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005955 exon4 c.G752A p.R251Q . . . MACF1 23499 broad.mit.edu 36 1 39572540 39572540 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033044 exon1 c.C3013A p.L1005I . . . MACF1 23499 broad.mit.edu 36 1 39573434 39573434 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033044 exon1 c.G3907T p.E1303X . . . PABPC4 8761 broad.mit.edu 36 1 39803599 39803599 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135653 exon8 c.C1011A p.F337L . . . RLF 6018 broad.mit.edu 36 1 40429041 40429041 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012421 exon3 c.G403A p.E135K . . . COL9A2 1298 broad.mit.edu 36 1 40550329 40550329 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001852 exon8 c.C406T p.R136X . . . ZNF643 65243 broad.mit.edu 36 1 40701067 40701067 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023070 exon5 c.A824C p.K275T . . . RIMS3 9783 broad.mit.edu 36 1 40871335 40871335 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014747 exon5 c.A465G p.P155P . . . FOXJ3 22887 broad.mit.edu 36 1 42429755 42429755 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198851 exon11 c.G1157A p.R386Q . . . WDR65 149465 broad.mit.edu 36 1 43448292 43448292 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167966 exon11 c.C2047A p.H683N . . . TIE1 7075 broad.mit.edu 36 1 43550048 43550048 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005424 exon10 c.C1453T p.R485W . . . MPL 4352 broad.mit.edu 36 1 43577638 43577638 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005373 exon4 c.C501T p.Y167Y . . . PTPRF 5792 broad.mit.edu 36 1 43817099 43817099 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130440 exon7 c.C600T p.S200S . . . IPO13 9670 broad.mit.edu 36 1 44205213 44205213 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014652 exon18 c.G2548T p.E850X . . . ATP6V0B 533 broad.mit.edu 36 1 44214361 44214361 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004047 exon3 c.G129A p.E43E . . . PIK3R3 8503 broad.mit.edu 36 1 46281944 46281944 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003629 exon10 c.G1374A p.S458S . . . CYP4B1 1580 broad.mit.edu 36 1 47053494 47053494 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099772 exon8 c.G1044T p.E348D . . . CMPK1 51727 broad.mit.edu 36 1 47611340 47611340 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001136140 exon2 c.G298A p.V100I . . . AGBL4 84871 broad.mit.edu 36 1 48891640 48891640 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032785 exon8 c.C795T p.I265I . . . EPS15 2060 broad.mit.edu 36 1 51640719 51640719 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159969 exon6 c.T916G p.F306V . . . RAB3B 5865 broad.mit.edu 36 1 52215174 52215174 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002867 exon2 c.G204T p.E68D . . . ZFYVE9 9372 broad.mit.edu 36 1 52502085 52502085 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007324 exon5 c.G2231A p.R744K . . . ORC1 4998 broad.mit.edu 36 1 52613154 52613154 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190818 exon16 c.T2307G p.N769K . . . SCP2 6342 broad.mit.edu 36 1 53288874 53288874 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193617 exon15 c.C1311A p.F437L . . . TMEM48 55706 broad.mit.edu 36 1 54010744 54010744 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018087 exon17 c.G1807A p.D603N . . . USP24 23358 broad.mit.edu 36 1 55386748 55386748 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015306 exon17 c.A1944G p.K648K . . . PRKAA2 5563 broad.mit.edu 36 1 56945859 56945859 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006252 exon9 c.C1544T p.S515F . . . DAB1 1600 broad.mit.edu 36 1 57374888 57374888 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021080 exon6 c.C222T p.G74G . . . MYSM1 114803 broad.mit.edu 36 1 58920347 58920347 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085487 exon8 c.G957A p.L319L . . . HOOK1 51361 broad.mit.edu 36 1 60081715 60081715 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015888 exon9 c.G645T p.K215N . . . C1orf87 127795 broad.mit.edu 36 1 60278243 60278243 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152377 exon5 c.C681T p.V227V . . . C1orf87 127795 broad.mit.edu 36 1 60293692 60293692 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152377 exon3 c.G114A p.E38E . . . KCNAB2 8514 broad.mit.edu 36 1 6064893 6064893 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199863 exon4 c.G52A p.D18N . . . CHD5 26038 broad.mit.edu 36 1 6133694 6133694 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015557 exon7 c.C979T p.R327C . . . L1TD1 54596 broad.mit.edu 36 1 62449108 62449108 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019079 exon4 c.G2074A p.D692N . . . ROR1 4919 broad.mit.edu 36 1 64375729 64375729 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005012 exon5 c.C572A p.S191Y . . . UBE2U 148581 broad.mit.edu 36 1 64445117 64445117 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152489 exon3 c.T231G p.F77L . . . CACHD1 57685 broad.mit.edu 36 1 64904363 64904363 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020925 exon16 c.C2159A p.S720Y . . . DNAJC11 55735 broad.mit.edu 36 1 6650370 6650370 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018198 exon4 c.C364T p.R122X . . . PDE4B 5142 broad.mit.edu 36 1 66601808 66601808 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002600 exon12 c.C1250T p.S417L . . . IL12RB2 3595 broad.mit.edu 36 1 67628310 67628310 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001559 exon15 c.C1957T p.L653F . . . RPE65 6121 broad.mit.edu 36 1 68668121 68668121 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000329 exon14 c.T1528G p.L510V . . . DEPDC1 55635 broad.mit.edu 36 1 68717478 68717478 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114120 exon10 c.T2049C p.L683L . . . LRRC7 57554 broad.mit.edu 36 1 70251302 70251302 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020794 exon11 c.C1078A p.L360I . . . LRRC7 57554 broad.mit.edu 36 1 70277070 70277070 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020794 exon19 c.A2861G p.D954G . . . SRSF11 9295 broad.mit.edu 36 1 70488230 70488230 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004768 exon11 c.C1030T p.R344X . . . ANKRD13C 81573 broad.mit.edu 36 1 70501117 70501117 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030816 exon13 c.T1497C p.D499D . . . CAMTA1 23261 broad.mit.edu 36 1 7073980 7073980 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015215 exon4 c.G264A p.E88E . . . PTGER3 5733 broad.mit.edu 36 1 71191243 71191243 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198718 exon4 c.G1192T p.E398X . . . FPGT 8790 broad.mit.edu 36 1 74443406 74443406 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003838 exon4 c.G1087A p.E363K . . . C1orf173 127254 broad.mit.edu 36 1 74809878 74809878 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002912 exon14 c.G4104T p.E1368D . . . C1orf173 127254 broad.mit.edu 36 1 74828181 74828181 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002912 exon12 c.A1898G p.H633R . . . C1orf173 127254 broad.mit.edu 36 1 74828337 74828337 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002912 exon12 c.C1742A p.S581X . . . ACADM 34 broad.mit.edu 36 1 75970941 75970941 + De_novo_Start_OutOfFrame SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000016 exon3 c.T143G p.F48C . . . RABGGTB 5876 broad.mit.edu 36 1 76030540 76030540 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004582 exon7 c.A666G p.R222R . . . MSH4 4438 broad.mit.edu 36 1 76054701 76054701 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002440 exon6 c.A871C p.N291H . . . MSH4 4438 broad.mit.edu 36 1 76116443 76116443 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002440 exon11 c.G1392T p.K464N . . . ZZZ3 26009 broad.mit.edu 36 1 77814477 77814477 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015534 exon12 c.G2195A p.R732Q . . . ZZZ3 26009 broad.mit.edu 36 1 77871321 77871321 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015534 exon5 c.A307C p.N103H . . . USP33 23032 broad.mit.edu 36 1 77979957 77979957 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015017 exon3 c.G107A p.R36Q . . . FAM73A 374986 broad.mit.edu 36 1 78097632 78097632 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198549 exon10 c.A1161G p.K387K . . . PER3 8863 broad.mit.edu 36 1 7810403 7810403 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016831 exon17 c.C2803T p.P935S . . . PTGFR 5737 broad.mit.edu 36 1 78731211 78731211 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000959 exon2 c.G195A p.S65S . . . ELTD1 64123 broad.mit.edu 36 1 79131397 79131397 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022159 exon13 c.A1815G p.P605P . . . LPHN2 23266 broad.mit.edu 36 1 82222963 82222963 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012302 exon18 c.C3340T p.R1114C . . . TTLL7 79739 broad.mit.edu 36 1 84144623 84144623 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024686 exon17 c.G2104T p.E702X . . . RERE 473 broad.mit.edu 36 1 8477752 8477752 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012102 exon11 c.C1062T p.V354V . . . CTBS 1486 broad.mit.edu 36 1 84808954 84808954 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004388 exon2 c.C215T p.S72F . . . MCOLN3 55283 broad.mit.edu 36 1 85260426 85260426 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018298 exon11 c.T1235C p.V412A . . . WDR63 126820 broad.mit.edu 36 1 85328496 85328496 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145172 exon8 c.T850C p.S284P . . . BCL10 8915 broad.mit.edu 36 1 85509035 85509035 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003921 exon2 c.A200C p.K67T . . . CYR61 3491 broad.mit.edu 36 1 85820330 85820330 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001554 exon3 c.G409T p.E137X . . . CLCA2 9635 broad.mit.edu 36 1 86679778 86679778 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006536 exon9 c.C1452A p.S484S . . . CLCA1 1179 broad.mit.edu 36 1 86711736 86711736 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001285 exon2 c.C211T p.R71X . . . CLCA4 22802 broad.mit.edu 36 1 86805714 86805714 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012128 exon7 c.G974A p.R325Q . . . HS2ST1 9653 broad.mit.edu 36 1 87322469 87322469 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134492 exon3 c.G368A p.R123H . . . GBP1 2633 broad.mit.edu 36 1 89294372 89294372 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002053 exon8 c.C1283T p.S428L . . . GBP2 2634 broad.mit.edu 36 1 89348042 89348042 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004120 exon10 c.A1565G p.Y522C . . . GBP7 388646 broad.mit.edu 36 1 89388668 89388668 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207398 exon6 c.C804A p.F268L . . . CA6 765 broad.mit.edu 36 1 8950396 8950396 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001215 exon6 c.G663A p.T221T . . . GBP5 115362 broad.mit.edu 36 1 89507722 89507722 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134486 exon2 c.G105A p.T35T . . . GBP6 163351 broad.mit.edu 36 1 89622249 89622249 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198460 exon10 c.C1478A p.A493D . . . GBP6 163351 broad.mit.edu 36 1 89623453 89623453 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198460 exon11 c.G1739A p.R580H . . . ZNF326 284695 broad.mit.edu 36 1 90251312 90251312 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182976 exon7 c.G854A p.R285Q . . . TGFBR3 7049 broad.mit.edu 36 1 91950550 91950550 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195683 exon13 c.C2001A p.F667L . . . TGFBR3 7049 broad.mit.edu 36 1 91972995 91972995 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195683 exon5 c.G494A p.R165Q . . . BRDT 676 broad.mit.edu 36 1 92214491 92214491 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207189 exon5 c.G526T p.E176X . . . BRDT 676 broad.mit.edu 36 1 92229371 92229371 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207189 exon13 c.C2045T p.P682L . . . CCDC18 343099 broad.mit.edu 36 1 93455897 93455897 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206886 exon14 c.G2199T p.K733N . . . ABCA4 24 broad.mit.edu 36 1 94257828 94257828 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000350 exon36 c.C5094T p.V1698V . . . ABCA4 24 broad.mit.edu 36 1 94270167 94270167 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000350 exon27 c.G3883T p.E1295X . . . ABCA4 24 broad.mit.edu 36 1 94281021 94281021 + Missense_Mutation SNP G A A rs61750065 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000350 exon22 c.C3212T p.S1071L . . . DPYD 1806 broad.mit.edu 36 1 97937601 97937601 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000110 exon6 c.C574T p.L192F . . . PALMD 54873 broad.mit.edu 36 1 99900489 99900489 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017734 exon2 c.C72A p.I24I . . . C1orf212 113444 broad.mit.edu 36 1 35093710 35093710 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . PRKACB 5567 broad.mit.edu 36 1 84414073 84414073 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . C1orf200 644997 broad.mit.edu 36 1 9636425 9636425 + Nonstop_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . SPTLC3 55304 broad.mit.edu 36 20 13082674 13082674 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018327 exon10 c.C1304T p.A435V . . . SEL1L2 80343 broad.mit.edu 36 20 13817146 13817146 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025229 exon6 c.T562G p.L188V . . . NSFL1C 55968 broad.mit.edu 36 20 1393016 1393016 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016143 exon2 c.C161T p.S54L . . . BFSP1 631 broad.mit.edu 36 20 17427597 17427597 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161705 exon6 c.G449A p.R150H . . . RRBP1 6238 broad.mit.edu 36 20 17588659 17588659 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042576 exon3 c.C494T p.S165L . . . C20orf79 140856 broad.mit.edu 36 20 18742607 18742607 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178483 exon1 c.G148A p.D50N . . . SLC24A3 57419 broad.mit.edu 36 20 19513691 19513691 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020689 exon5 c.C500T p.S167L . . . SLC24A3 57419 broad.mit.edu 36 20 19610539 19610539 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020689 exon10 c.A805G p.T269A . . . RIN2 54453 broad.mit.edu 36 20 19899535 19899535 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018993 exon6 c.C590T p.S197L . . . CRNKL1 51340 broad.mit.edu 36 20 19964971 19964971 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016652 exon15 c.C2415A p.I805I . . . CRNKL1 51340 broad.mit.edu 36 20 19966071 19966071 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016652 exon14 c.C2275T p.R759X . . . XRN2 22803 broad.mit.edu 36 20 21262188 21262188 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012255 exon10 c.G865T p.E289X . . . TGM3 7053 broad.mit.edu 36 20 2263768 2263768 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003245 exon11 c.A1649C p.E550A . . . CST7 8530 broad.mit.edu 36 20 24887636 24887636 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003650 exon3 c.C316T p.R106C . . . PYGB 5834 broad.mit.edu 36 20 25187909 25187909 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002862 exon2 c.C280T p.R94C . . . NINL 22981 broad.mit.edu 36 20 25382140 25382140 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025176 exon24 c.C4096T p.R1366C . . . NINL 22981 broad.mit.edu 36 20 25417916 25417916 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025176 exon13 c.C1641T p.F547F . . . VPS16 64601 broad.mit.edu 36 20 2788756 2788756 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080413 exon3 c.G199A p.D67N . . . VPS16 64601 broad.mit.edu 36 20 2790331 2790331 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080413 exon9 c.G880A p.D294N . . . TPX2 22974 broad.mit.edu 36 20 29818052 29818052 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012112 exon5 c.G262T p.E88X . . . PDRG1 81572 broad.mit.edu 36 20 29998000 29998000 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030815 exon4 c.G279A p.K93K . . . POFUT1 23509 broad.mit.edu 36 20 30282446 30282446 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015352 exon6 c.C899T p.S300L . . . UBOX5 22888 broad.mit.edu 36 20 3051213 3051213 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014948 exon3 c.C72T p.Y24Y . . . PLUNC 51297 broad.mit.edu 36 20 31289563 31289563 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016583 exon3 c.C202A p.L68M . . . PLUNC 51297 broad.mit.edu 36 20 31289625 31289625 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016583 exon3 c.T264C p.L88L . . . ACSS2 55902 broad.mit.edu 36 20 32973261 32973261 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018677 exon13 c.C1479A p.F493L . . . MYH7B 57644 broad.mit.edu 36 20 33041561 33041561 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020884 exon21 c.G1977T p.Q659H . . . SPAG4 6676 broad.mit.edu 36 20 33670924 33670924 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003116 exon10 c.T919C p.F307L . . . RBM39 9584 broad.mit.edu 36 20 33768137 33768137 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004902 exon10 c.A830G p.E277G . . . EPB41L1 2036 broad.mit.edu 36 20 34239698 34239698 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012156 exon9 c.G889A p.D297N . . . ATRN 8455 broad.mit.edu 36 20 3468891 3468891 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139322 exon3 c.C517T p.R173C . . . C20orf117 140710 broad.mit.edu 36 20 34878031 34878031 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080627 exon5 c.G1228T p.D410Y . . . RBL1 5933 broad.mit.edu 36 20 35060678 35060678 + Silent SNP G A A rs8114297 byCluster;byFrequency;byHapMap TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002895 exon22 c.C3105T p.I1035I . . . CTNNBL1 56259 broad.mit.edu 36 20 35799260 35799260 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030877 exon3 c.A286C p.N96H . . . KIAA1755 85449 broad.mit.edu 36 20 36280092 36280092 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029864 exon12 c.G2647A p.A883T . . . BPI 671 broad.mit.edu 36 20 36373734 36373734 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001725 exon5 c.G593A p.R198Q . . . BPI 671 broad.mit.edu 36 20 36385765 36385765 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001725 exon8 c.G848A p.R283H . . . ACTR5 79913 broad.mit.edu 36 20 36812222 36812222 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024855 exon2 c.G531T p.K177N . . . DHX35 60625 broad.mit.edu 36 20 37072385 37072385 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190809 exon12 c.G1178A p.R393H . . . RNF24 11237 broad.mit.edu 36 20 3862823 3862823 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134337 exon6 c.C334T p.R112C . . . TOP1 7150 broad.mit.edu 36 20 39138335 39138335 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003286 exon4 c.G266A p.R89Q . . . LPIN3 64900 broad.mit.edu 36 20 39408008 39408008 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022896 exon2 c.C151A p.R51S . . . CHD6 84181 broad.mit.edu 36 20 39513941 39513941 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032221 exon22 c.C3462A p.F1154L . . . PTPRT 11122 broad.mit.edu 36 20 40164273 40164273 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133170 exon27 c.C3676T p.R1226X . . . PTPRT 11122 broad.mit.edu 36 20 40377831 40377831 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133170 exon12 c.C2085A p.L695L . . . C20orf111 51526 broad.mit.edu 36 20 42259570 42259570 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016470 exon4 c.G415A p.D139N . . . CSNK2A1 1457 broad.mit.edu 36 20 426371 426371 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001895 exon6 c.T420G p.I140M . . . PABPC1L 80336 broad.mit.edu 36 20 42981240 42981240 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001124756 exon5 c.A646C p.K216Q . . . CDH22 64405 broad.mit.edu 36 20 44272547 44272547 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021248 exon6 c.C1092A p.F364L . . . CDH22 64405 broad.mit.edu 36 20 44303223 44303223 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021248 exon2 c.C336T p.I112I . . . PREX1 57580 broad.mit.edu 36 20 46797811 46797811 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020820 exon2 c.G233A p.R78H . . . ARFGEF2 10564 broad.mit.edu 36 20 47038289 47038289 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006420 exon17 c.C2318T p.A773V . . . RASSF2 9770 broad.mit.edu 36 20 4716358 4716358 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170774 exon9 c.G734A p.R245Q . . . SLC9A8 23315 broad.mit.edu 36 20 47862878 47862878 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015266 exon1 c.G12T p.K4N . . . SLC23A2 9962 broad.mit.edu 36 20 4790650 4790650 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203327 exon15 c.C1568T p.S523L . . . PTPN1 5770 broad.mit.edu 36 20 48629809 48629809 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002827 exon8 c.G1027A p.D343N . . . BCAS4 55653 broad.mit.edu 36 20 48926456 48926456 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017843 exon6 c.G613A p.V205I . . . ADNP 23394 broad.mit.edu 36 20 48942769 48942769 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015339 exon5 c.T1889C p.I630T . . . ADNP 23394 broad.mit.edu 36 20 48953844 48953844 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015339 exon3 c.G97T p.E33X . . . KCNG1 3755 broad.mit.edu 36 20 49054019 49054019 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002237 exon3 c.C1506T p.F502F . . . ZFP64 55734 broad.mit.edu 36 20 50135076 50135076 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199427 exon9 c.G1365A p.A455A . . . ZNF217 7764 broad.mit.edu 36 20 51621756 51621756 + Silent SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006526 exon4 c.A3081C p.A1027A . . . PROKR2 128674 broad.mit.edu 36 20 5230877 5230877 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144773 exon2 c.G964A p.A322T . . . CASS4 57091 broad.mit.edu 36 20 54461113 54461113 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020356 exon5 c.G1474A p.E492K . . . C20orf107 388799 broad.mit.edu 36 20 54533286 54533286 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012971 exon1 c.A15C p.K5N . . . TFAP2C 7022 broad.mit.edu 36 20 54646277 54646277 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003222 exon7 c.A1154G p.N385S . . . BMP7 655 broad.mit.edu 36 20 55236747 55236747 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001719 exon2 c.G556A p.D186N . . . CTCFL 140690 broad.mit.edu 36 20 55527281 55527281 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080618 exon5 c.G998A p.R333H . . . ZBP1 81030 broad.mit.edu 36 20 55618799 55618799 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160417 exon7 c.C902T p.S301L . . . ZBP1 81030 broad.mit.edu 36 20 55623496 55623496 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160419 exon4 c.G355T p.D119Y . . . CDH4 1002 broad.mit.edu 36 20 59936818 59936818 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001794 exon12 c.C1947T p.F649F . . . TCFL5 10732 broad.mit.edu 36 20 60959332 60959332 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006602 exon4 c.C1098T p.G366G . . . YTHDF1 54915 broad.mit.edu 36 20 61298518 61298518 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017798 exon5 c.G1667A p.R556Q . . . KCNQ2 3785 broad.mit.edu 36 20 61516719 61516719 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172107 exon13 c.G1506A p.A502A . . . MYT1 4661 broad.mit.edu 36 20 62309669 62309669 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004535 exon7 c.G676A p.E226K . . . PLCB4 5332 broad.mit.edu 36 20 9330163 9330163 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000933 exon17 c.G1537A p.E513K . . . ANKRD5 63926 broad.mit.edu 36 20 9974268 9974268 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198798 exon5 c.C743T p.S248L . . . LIPI 149998 broad.mit.edu 36 21 14476039 14476039 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198996 exon4 c.C617A p.A206D . . . NRIP1 8204 broad.mit.edu 36 21 15261783 15261783 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003489 exon4 c.C602T p.T201M . . . USP25 29761 broad.mit.edu 36 21 16172575 16172575 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013396 exon24 c.G3078A p.P1026P . . . TMPRSS15 5651 broad.mit.edu 36 21 18692429 18692429 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002772 exon2 c.C234A p.L78L . . . JAM2 58494 broad.mit.edu 36 21 25992984 25992984 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021219 exon5 c.C519T p.I173I . . . ADAMTS1 9510 broad.mit.edu 36 21 27132164 27132164 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006988 exon9 c.A2509G p.K837E . . . ADAMTS5 11096 broad.mit.edu 36 21 27260042 27260042 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007038 exon1 c.C540T p.R180R . . . RWDD2B 10069 broad.mit.edu 36 21 29302645 29302645 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016940 exon2 c.G236A p.R79Q . . . USP16 10600 broad.mit.edu 36 21 29341019 29341019 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001992 exon14 c.A1514C p.K505T . . . CCT8 10694 broad.mit.edu 36 21 29363663 29363663 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006585 exon3 c.G183A p.E61E . . . BACH1 571 broad.mit.edu 36 21 29621523 29621523 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206866 exon3 c.G1507A p.D503N . . . BACH1 571 broad.mit.edu 36 21 29623722 29623722 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206866 exon4 c.G1613A p.R538Q . . . GRIK1 2897 broad.mit.edu 36 21 29890734 29890734 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000830 exon9 c.T1234C p.Y412H . . . KRTAP19-5 337972 broad.mit.edu 36 21 30796226 30796226 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181611 exon1 c.C54T p.F18F . . . TIAM1 7074 broad.mit.edu 36 21 31517692 31517692 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003253 exon9 c.G1896A p.E632E . . . SFRS15 57466 broad.mit.edu 36 21 31987612 31987612 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145444 exon11 c.G1334A p.R445Q . . . SYNJ1 8867 broad.mit.edu 36 21 32967602 32967602 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003895 exon14 c.C1762T p.R588C . . . SYNJ1 8867 broad.mit.edu 36 21 32967647 32967647 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003895 exon14 c.C1717T p.R573X . . . DNAJC28 54943 broad.mit.edu 36 21 33783118 33783118 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040192 exon2 c.G453A p.E151E . . . SETD4 54093 broad.mit.edu 36 21 36339780 36339780 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017438 exon6 c.G696A p.L232L . . . HLCS 3141 broad.mit.edu 36 21 37224516 37224516 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000411 exon6 c.G1084A p.E362K . . . DSCR3 10311 broad.mit.edu 36 21 37527549 37527549 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006052 exon4 c.T416G p.F139C . . . DYRK1A 1859 broad.mit.edu 36 21 37774880 37774880 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130436 exon4 c.G371A p.R124Q . . . BRWD1 54014 broad.mit.edu 36 21 39525997 39525997 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033656 exon25 c.G2976A p.E992E . . . SH3BGR 6450 broad.mit.edu 36 21 39793708 39793708 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007341 exon4 c.G591T p.K197N . . . IGSF5 150084 broad.mit.edu 36 21 40064920 40064920 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080444 exon4 c.G626T p.S209I . . . DSCAM 1826 broad.mit.edu 36 21 40570001 40570001 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001389 exon11 c.C2249A p.S750X . . . ZNF295 49854 broad.mit.edu 36 21 42286394 42286394 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098403 exon3 c.G880T p.E294X . . . ABCG1 9619 broad.mit.edu 36 21 42575529 42575529 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207629 exon6 c.G656A p.R219H . . . AGPAT3 56894 broad.mit.edu 36 21 44226627 44226627 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020132 exon10 c.C1057T p.R353C . . . TRAPPC10 7109 broad.mit.edu 36 21 44323884 44323884 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003274 exon12 c.C1481T p.A494V . . . C21orf29 54084 broad.mit.edu 36 21 44766246 44766246 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144991 exon9 c.C1514T p.S505L . . . C21orf29 54084 broad.mit.edu 36 21 44766422 44766422 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144991 exon9 c.C1338T p.G446G . . . C21orf29 54084 broad.mit.edu 36 21 44771669 44771669 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144991 exon7 c.C1083T p.F361F . . . C21orf57 54059 broad.mit.edu 36 21 46531409 46531409 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006114 exon2 c.A154C p.R52R . . . TPTE 7179 broad.mit.edu 36 21 9930763 9930763 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199259 exon22 c.C1399A p.L467I . . . TPTE 7179 broad.mit.edu 36 21 9973240 9973240 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199259 exon9 c.T289C p.F97L . . . OR11H1 81061 broad.mit.edu 36 22 14829709 14829709 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005239 exon1 c.C96A p.F32L . . . XKR3 150165 broad.mit.edu 36 22 15668719 15668719 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175878 exon2 c.A245C p.Q82P . . . CECR1 51816 broad.mit.edu 36 22 16043530 16043530 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177405 exon5 c.G480T p.K160N . . . MICAL3 57553 broad.mit.edu 36 22 16751995 16751995 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136004 exon13 c.G1696T p.D566Y . . . CLTCL1 8218 broad.mit.edu 36 22 17621746 17621746 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001835 exon3 c.G255A p.G85G . . . PI4KA 5297 broad.mit.edu 36 22 19518862 19518862 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058004 exon3 c.C181T p.R61W . . . SNAP29 9342 broad.mit.edu 36 22 19572113 19572113 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004782 exon5 c.C766T p.R256X . . . UBE2L3 7332 broad.mit.edu 36 22 20295222 20295222 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003347 exon3 c.A200C p.K67T . . . ZNF280B 140883 broad.mit.edu 36 22 21172637 21172637 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080764 exon4 c.G1087A p.E363K . . . SUSD2 56241 broad.mit.edu 36 22 22914250 22914250 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019601 exon14 c.C2399T p.A800V . . . GGT1 2678 broad.mit.edu 36 22 23340828 23340828 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G A Unknown Valid Germline Phase_I Capture Illumina Illumina HiSeq NM_013430 exon6 c.G250A p.G84S . . . SGSM1 129049 broad.mit.edu 36 22 23631096 23631096 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098497 exon21 c.C2760T p.I920I . . . MYO18B 84700 broad.mit.edu 36 22 24494945 24494945 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032608 exon4 c.G1062T p.Q354H . . . MYO18B 84700 broad.mit.edu 36 22 24552414 24552414 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032608 exon14 c.G2734A p.A912T . . . SEZ6L 23544 broad.mit.edu 36 22 25091393 25091393 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184776 exon12 c.C2463T p.I821I . . . SEZ6L 23544 broad.mit.edu 36 22 25101560 25101560 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184776 exon13 c.G2622T p.E874D . . . MN1 4330 broad.mit.edu 36 22 26525736 26525736 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002430 exon1 c.C796T p.P266S . . . PITPNB 23760 broad.mit.edu 36 22 26622602 26622602 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012399 exon6 c.A310C p.K104Q . . . XBP1 7494 broad.mit.edu 36 22 27521294 27521294 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079539 exon6 c.G1000A p.D334N . . . BPIL2 254240 broad.mit.edu 36 22 31161765 31161765 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174932 exon8 c.G850A p.E284K . . . FBXO7 25793 broad.mit.edu 36 22 31210054 31210054 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033024 exon3 c.T351C p.N117N . . . FBXO7 25793 broad.mit.edu 36 22 31211061 31211061 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033024 exon4 c.G415A p.E139K . . . CACNG2 10369 broad.mit.edu 36 22 35290504 35290504 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006078 exon4 c.A812G p.Y271C . . . C1QTNF6 114904 broad.mit.edu 36 22 35908204 35908204 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182486 exon3 c.C807T p.S269S . . . MFNG 4242 broad.mit.edu 36 22 36206207 36206207 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166343 exon2 c.C339T p.F113F . . . TRIOBP 11078 broad.mit.edu 36 22 36449504 36449504 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039141 exon7 c.C995T p.A332V . . . CSNK1E 1454 broad.mit.edu 36 22 37025871 37025871 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001894 exon6 c.C711T p.I237I . . . NPTXR 23467 broad.mit.edu 36 22 37552522 37552522 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014293 exon3 c.C1027T p.P343S . . . CBX6 23466 broad.mit.edu 36 22 37592226 37592226 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014292 exon5 c.C1173T p.F391F . . . APOBEC3G 60489 broad.mit.edu 36 22 37804950 37804950 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021822 exon2 c.C85T p.R29C . . . ENTHD1 150350 broad.mit.edu 36 22 38469819 38469819 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152512 exon7 c.G1635T p.K545N . . . EP300 2033 broad.mit.edu 36 22 39843621 39843621 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001429 exon2 c.C579T p.N193N . . . MEI1 150365 broad.mit.edu 36 22 40504661 40504661 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152513 exon22 c.C2714T p.S905L . . . MEI1 150365 broad.mit.edu 36 22 40510591 40510591 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152513 exon26 c.G3203A p.R1068Q . . . MEI1 150365 broad.mit.edu 36 22 40520408 40520408 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152513 exon28 c.T3515G p.I1172S . . . MEI1 150365 broad.mit.edu 36 22 40521362 40521362 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152513 exon29 c.T3536G p.F1179C . . . TTLL1 25809 broad.mit.edu 36 22 41772367 41772367 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012263 exon10 c.G1135A p.E379K . . . SMC1B 27127 broad.mit.edu 36 22 44181393 44181393 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148674 exon3 c.C316T p.R106C . . . PKDREJ 10343 broad.mit.edu 36 22 45035489 45035489 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006071 exon1 c.C2395T p.R799X . . . ARID5A 10865 broad.mit.edu 36 2 96580622 96580623 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_212481 exon7 c.630_631insC p.E210fs . . . CHST10 9486 broad.mit.edu 36 2 100376192 100376192 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004854 exon7 c.G1018A p.E340K . . . NMS 129521 broad.mit.edu 36 2 100462247 100462247 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011717 exon6 c.T262G p.F88V . . . TBC1D8 11138 broad.mit.edu 36 2 101019012 101019012 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102426 exon9 c.C1458T p.Y486Y . . . IL1RL2 8808 broad.mit.edu 36 2 102184457 102184457 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003854 exon5 c.G499A p.E167K . . . IL18RAP 8807 broad.mit.edu 36 2 102426146 102426146 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003853 exon8 c.A851G p.N284S . . . SLC9A4 389015 broad.mit.edu 36 2 102491822 102491822 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011552 exon6 c.C1486T p.R496C . . . MFSD9 84804 broad.mit.edu 36 2 102706615 102706615 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032718 exon5 c.T613G p.F205V . . . MRPS9 64965 broad.mit.edu 36 2 105075306 105075306 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182640 exon8 c.C667T p.R223W . . . ST6GAL2 84620 broad.mit.edu 36 2 106816941 106816941 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142351 exon3 c.C1037T p.S346L . . . SULT1C3 442038 broad.mit.edu 36 2 108248160 108248160 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008743 exon7 c.T836C p.V279A . . . RANBP2 5903 broad.mit.edu 36 2 108736782 108736782 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A A A A Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_006267 exon15 c.A2125C p.N709H . . . RANBP2 5903 broad.mit.edu 36 2 108747118 108747118 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006267 exon20 c.C3691T p.R1231C . . . SEPT10 151011 broad.mit.edu 36 2 109661019 109661019 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178584 exon9 c.G1177T p.E393X . . . NPHP1 4867 broad.mit.edu 36 2 110246604 110246604 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128178 exon17 c.T1583G p.F528C . . . BUB1 699 broad.mit.edu 36 2 111148196 111148196 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004336 exon3 c.G163A p.E55K . . . FBLN7 129804 broad.mit.edu 36 2 112656947 112656947 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153214 exon6 c.G779A p.R260Q . . . ZC3H6 376940 broad.mit.edu 36 2 112798358 112798358 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198581 exon10 c.G1499A p.G500E . . . POLR1B 84172 broad.mit.edu 36 2 113026735 113026735 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T T T T Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001137604 exon6 c.T861G p.F287L . . . ACTR3 10096 broad.mit.edu 36 2 114416356 114416356 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005721 exon8 c.G808A p.D270N . . . GREB1 9687 broad.mit.edu 36 2 11687664 11687664 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014668 exon26 c.G4589A p.R1530Q . . . LPIN1 23175 broad.mit.edu 36 2 11841418 11841418 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145693 exon8 c.G1169A p.R390Q . . . CCDC93 54520 broad.mit.edu 36 2 118460045 118460045 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019044 exon7 c.G590A p.R197Q . . . C1QL2 165257 broad.mit.edu 36 2 119630979 119630979 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182528 exon2 c.G733A p.A245T . . . TMEM37 140738 broad.mit.edu 36 2 119910965 119910965 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_183240 exon2 c.C52G p.R18G . . . EPB41L5 57669 broad.mit.edu 36 2 120549547 120549547 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184937 exon6 c.C433G p.Q145E . . . GLI2 2736 broad.mit.edu 36 2 121456764 121456764 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005270 exon10 c.C1521T p.F507F . . . CLASP1 23332 broad.mit.edu 36 2 121841742 121841742 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142274 exon33 c.C3577T p.R1193W . . . CNTNAP5 129684 broad.mit.edu 36 2 125385571 125385571 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130773 exon23 c.C3710T p.S1237L . . . ERCC3 2071 broad.mit.edu 36 2 127745427 127745427 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000122 exon12 c.C1900T p.R634C . . . MAP3K2 10746 broad.mit.edu 36 2 127792268 127792268 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006609 exon12 c.G1141T p.E381X . . . MAP3K2 10746 broad.mit.edu 36 2 127798225 127798225 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006609 exon9 c.T740G p.F247C . . . TRIB2 28951 broad.mit.edu 36 2 12798347 12798347 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021643 exon3 c.G1008T p.E336D . . . LIMS2 55679 broad.mit.edu 36 2 128113454 128113454 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136037 exon11 c.G964A p.D322N . . . SAP130 79595 broad.mit.edu 36 2 128473786 128473786 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145928 exon10 c.C1290T p.V430V . . . UGGT1 56886 broad.mit.edu 36 2 128607222 128607222 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_020120 exon14 c.C1415T p.S472L . . . TUBA3E 112714 broad.mit.edu 36 2 130668396 130668396 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207312 exon4 c.G489T p.K163N . . . FAM123C 205147 broad.mit.edu 36 2 131236891 131236891 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105195 exon2 c.C776T p.S259L . . . POTEE 445582 broad.mit.edu 36 2 131692567 131692567 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083538 exon1 c.G122A p.S41N . . . CCNT2 905 broad.mit.edu 36 2 135410992 135410992 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058241 exon3 c.C352T p.L118L . . . LCT 3938 broad.mit.edu 36 2 136286657 136286657 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002299 exon7 c.C2047A p.L683M . . . MCM6 4175 broad.mit.edu 36 2 136339083 136339083 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005915 exon7 c.C1048A p.L350I . . . THSD7B 80731 broad.mit.edu 36 2 137531125 137531125 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080427 exon2 c.T712G p.F238V . . . NXPH2 11249 broad.mit.edu 36 2 139145194 139145194 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007226 exon2 c.G563A p.R188H . . . LRP1B 53353 broad.mit.edu 36 2 140721153 140721153 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018557 exon87 c.G13296T p.K4432N . . . LRP1B 53353 broad.mit.edu 36 2 140959391 140959391 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018557 exon59 c.C9416A p.P3139H . . . LRP1B 53353 broad.mit.edu 36 2 140966721 140966721 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018557 exon57 c.T9046G p.F3016V . . . LRP1B 53353 broad.mit.edu 36 2 141000283 141000283 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018557 exon48 c.G7869T p.K2623N . . . LRP1B 53353 broad.mit.edu 36 2 141015030 141015030 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018557 exon45 c.G7495T p.E2499X . . . LRP1B 53353 broad.mit.edu 36 2 141015881 141015881 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018557 exon44 c.C7324A p.L2442I . . . LRP1B 53353 broad.mit.edu 36 2 141424414 141424414 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018557 exon20 c.A2996C p.E999A . . . LRP1B 53353 broad.mit.edu 36 2 141456297 141456297 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T T T T Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_018557 exon18 c.A2789G p.D930G . . . ZEB2 9839 broad.mit.edu 36 2 144873942 144873942 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171653 exon7 c.G1210A p.V404I . . . ZEB2 9839 broad.mit.edu 36 2 144875247 144875247 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171653 exon6 c.G833A p.R278Q . . . ZEB2 9839 broad.mit.edu 36 2 144878002 144878002 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171653 exon5 c.G686A p.R229H . . . ACVR2A 92 broad.mit.edu 36 2 148394343 148394343 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001616 exon8 c.A1037C p.K346T . . . ACVR2A 92 broad.mit.edu 36 2 148397060 148397060 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001616 exon9 c.A1126C p.N376H . . . LYPD6B 130576 broad.mit.edu 36 2 149770024 149770024 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177964 exon4 c.C89T p.S30L . . . NEB 4703 broad.mit.edu 36 2 152084508 152084508 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon154 c.C22500T p.F7500F . . . NEB 4703 broad.mit.edu 36 2 152125856 152125856 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon123 c.G19114T p.E6372X . . . NEB 4703 broad.mit.edu 36 2 152179276 152179276 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon77 c.G11361A p.P3787P . . . NEB 4703 broad.mit.edu 36 2 152242459 152242459 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon34 c.G3640A p.E1214K . . . NEB 4703 broad.mit.edu 36 2 152259181 152259181 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon20 c.G1798T p.D600Y . . . NEB 4703 broad.mit.edu 36 2 152271731 152271731 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon13 c.G1062T p.K354N . . . ARL5A 26225 broad.mit.edu 36 2 152371681 152371681 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012097 exon5 c.G391T p.E131X . . . CACNB4 785 broad.mit.edu 36 2 152445635 152445635 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145798 exon4 c.C315T p.G105G . . . NBAS 51594 broad.mit.edu 36 2 15276500 15276500 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_015909 exon48 c.C6280T p.P2094S . . . FMNL2 114793 broad.mit.edu 36 2 153181950 153181950 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052905 exon13 c.C1312T p.R438W . . . KCNJ3 3760 broad.mit.edu 36 2 155419716 155419716 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002239 exon3 c.A1151T p.N384I . . . CCDC148 130940 broad.mit.edu 36 2 158874375 158874375 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138803 exon9 c.A926G p.D309G . . . PKP4 8502 broad.mit.edu 36 2 159196591 159196591 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003628 exon8 c.A1234G p.T412A . . . TANC1 85461 broad.mit.edu 36 2 159794649 159794649 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033394 exon27 c.G4466A p.R1489Q . . . DPP4 1803 broad.mit.edu 36 2 162583510 162583510 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001935 exon16 c.G1395A p.A465A . . . KCNH7 90134 broad.mit.edu 36 2 162949452 162949452 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033272 exon13 c.C2954A p.S985Y . . . KCNH7 90134 broad.mit.edu 36 2 163101684 163101684 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173162 exon3 c.A460C p.N154H . . . PXDN 7837 broad.mit.edu 36 2 1631253 1631253 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012293 exon17 c.C3306A p.F1102L . . . FIGN 55137 broad.mit.edu 36 2 164174732 164174732 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018086 exon3 c.C1856T p.S619L . . . GRB14 2888 broad.mit.edu 36 2 165086819 165086819 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004490 exon6 c.G733T p.E245X . . . SCN3A 6328 broad.mit.edu 36 2 165662108 165662108 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006922 exon23 c.A4139C p.N1380T . . . SCN3A 6328 broad.mit.edu 36 2 165678599 165678599 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006922 exon20 c.C3642A p.F1214L . . . CSRNP3 80034 broad.mit.edu 36 2 166243690 166243690 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172173 exon7 c.C939T p.I313I . . . SCN1A 6323 broad.mit.edu 36 2 166619477 166619477 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165964 exon4 c.T519G p.I173M . . . SCN9A 6335 broad.mit.edu 36 2 166845145 166845145 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002977 exon14 c.G2278A p.E760K . . . SCN7A 6332 broad.mit.edu 36 2 166994011 166994011 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002976 exon16 c.C2612A p.S871X . . . SCN7A 6332 broad.mit.edu 36 2 166997495 166997495 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002976 exon15 c.T2171G p.F724C . . . XIRP2 129446 broad.mit.edu 36 2 167782945 167782945 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199143 exon6 c.C846T p.C282C . . . XIRP2 129446 broad.mit.edu 36 2 167809097 167809097 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.C2283T p.F761F . . . XIRP2 129446 broad.mit.edu 36 2 167814776 167814776 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.C7962T p.T2654T . . . XIRP2 129446 broad.mit.edu 36 2 167814926 167814926 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.C8112T p.F2704F . . . XIRP2 129446 broad.mit.edu 36 2 167816121 167816121 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.T9307G p.F3103V . . . XIRP2 129446 broad.mit.edu 36 2 167823810 167823810 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199143 exon11 c.C2607A p.F869L . . . SPC25 57405 broad.mit.edu 36 2 169442054 169442054 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020675 exon4 c.T286C p.L96L . . . LRP2 4036 broad.mit.edu 36 2 169733326 169733326 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon61 c.C11604T p.G3868G . . . LRP2 4036 broad.mit.edu 36 2 169756674 169756674 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon48 c.C8946T p.Y2982Y . . . LRP2 4036 broad.mit.edu 36 2 169835770 169835770 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon16 c.C2210T p.S737L . . . KLHL23 151230 broad.mit.edu 36 2 170314200 170314200 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199290 exon6 c.G1389A p.P463P . . . GAD1 2571 broad.mit.edu 36 2 171394307 171394307 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000817 exon4 c.G222T p.K74N . . . CDCA7 83879 broad.mit.edu 36 2 173932385 173932385 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031942 exon3 c.G304A p.E102K . . . CIR1 9541 broad.mit.edu 36 2 174951917 174951917 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004882 exon7 c.C464T p.S155L . . . RAD51AP2 729475 broad.mit.edu 36 2 17561731 17561731 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099218 exon1 c.G1433A p.W478X . . . HOXD1 3231 broad.mit.edu 36 2 176762902 176762902 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024501 exon2 c.G773A p.R258Q . . . GEN1 348654 broad.mit.edu 36 2 17806152 17806152 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130009 exon3 c.T170A p.F57Y . . . GEN1 348654 broad.mit.edu 36 2 17825908 17825908 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130009 exon14 c.G1948A p.D650N . . . MSGN1 343930 broad.mit.edu 36 2 17861587 17861587 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105569 exon1 c.C321T p.G107G . . . RBM45 129831 broad.mit.edu 36 2 178689303 178689303 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152945 exon2 c.C369A p.I123I . . . OSBPL6 114880 broad.mit.edu 36 2 178922212 178922212 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032523 exon12 c.A1003G p.T335A . . . PRKRA 8575 broad.mit.edu 36 2 179017425 179017425 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001139517 exon3 c.G333T p.K111N . . . TTN 7273 broad.mit.edu 36 2 179101390 179101390 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon189 c.C80038A p.L26680I . . . TTN 7273 broad.mit.edu 36 2 179106628 179106628 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon186 c.C75764T p.S25255L . . . TTN 7273 broad.mit.edu 36 2 179109400 179109400 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon185 c.T73124G p.F24375C . . . TTN 7273 broad.mit.edu 36 2 179111648 179111648 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon182 c.C71958T p.N23986N . . . TTN 7273 broad.mit.edu 36 2 179137846 179137846 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.G54063T p.K18021N . . . TTN 7273 broad.mit.edu 36 2 179162506 179162506 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon132 c.A34996G p.T11666A . . . TTN 7273 broad.mit.edu 36 2 179215266 179215266 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon47 c.C13306T p.R4436C . . . TTN 7273 broad.mit.edu 36 2 179293583 179293583 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon77 c.T19419G p.S6473S . . . TTN 7273 broad.mit.edu 36 2 179301700 179301700 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon63 c.G15466T p.D5156Y . . . TTN 7273 broad.mit.edu 36 2 179305098 179305098 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon54 c.A13111G p.M4371V . . . TTN 7273 broad.mit.edu 36 2 179324967 179324967 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133379 exon46 c.C10405T p.R3469C . . . TTN 7273 broad.mit.edu 36 2 179346318 179346318 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133379 exon33 c.C7618T p.R2540C . . . TTN 7273 broad.mit.edu 36 2 179348801 179348801 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133379 exon28 c.C6035A p.A2012D . . . TTN 7273 broad.mit.edu 36 2 179358699 179358699 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133379 exon15 c.G2386A p.D796N . . . ITGA4 3676 broad.mit.edu 36 2 182055500 182055500 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000885 exon9 c.T918C p.F306F . . . MYT1L 23040 broad.mit.edu 36 2 1822012 1822012 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015025 exon21 c.C2990T p.S997L . . . PDE1A 5136 broad.mit.edu 36 2 182761984 182761984 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005019 exon11 c.C1222T p.R408W . . . FAM171B 165215 broad.mit.edu 36 2 187324171 187324171 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177454 exon5 c.G790T p.E264X . . . FAM171B 165215 broad.mit.edu 36 2 187334689 187334689 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177454 exon8 c.G1375A p.D459N . . . CALCRL 10203 broad.mit.edu 36 2 187925270 187925270 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005795 exon13 c.T944C p.V315A . . . COL5A2 1290 broad.mit.edu 36 2 189608066 189608066 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000393 exon53 c.C4174A p.L1392I . . . MYT1L 23040 broad.mit.edu 36 2 1900069 1900069 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015025 exon11 c.T1527G p.C509W . . . WDR75 84128 broad.mit.edu 36 2 190040523 190040523 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032168 exon14 c.C1532A p.S511Y . . . ASNSD1 54529 broad.mit.edu 36 2 190240796 190240796 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019048 exon5 c.G1526A p.R509H . . . ANKAR 150709 broad.mit.edu 36 2 190316318 190316318 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144708 exon21 c.G3883T p.E1295X . . . MYT1L 23040 broad.mit.edu 36 2 1905542 1905542 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015025 exon10 c.G1006A p.D336N . . . MYO1B 4430 broad.mit.edu 36 2 191937195 191937195 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012223 exon11 c.G980A p.R327Q . . . TMEFF2 23671 broad.mit.edu 36 2 192529279 192529279 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016192 exon8 c.C816A p.F272L . . . CCDC150 284992 broad.mit.edu 36 2 197294493 197294493 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080539 exon21 c.T2262C p.I754I . . . PGAP1 80055 broad.mit.edu 36 2 197418978 197418978 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024989 exon23 c.A2159C p.E720A . . . ANKRD44 91526 broad.mit.edu 36 2 197574765 197574765 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195144 exon22 c.C2392T p.R798C . . . ANKRD44 91526 broad.mit.edu 36 2 197709626 197709626 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153697 exon4 c.C196T p.R66C . . . RFTN2 130132 broad.mit.edu 36 2 198188895 198188895 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144629 exon7 c.C1104T p.F368F . . . PLCL1 5334 broad.mit.edu 36 2 198657809 198657809 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006226 exon2 c.C1323T p.S441S . . . WDR35 57539 broad.mit.edu 36 2 20009128 20009128 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006657 exon17 c.G1778A p.R593Q . . . WDR35 57539 broad.mit.edu 36 2 20017174 20017174 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006657 exon13 c.G1335A p.S445S . . . LAPTM4A 9741 broad.mit.edu 36 2 20098235 20098235 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014713 exon5 c.T502C p.F168L . . . CLK1 1195 broad.mit.edu 36 2 201434220 201434220 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162407 exon3 c.C502T p.R168C . . . TRAK2 66008 broad.mit.edu 36 2 201970470 201970470 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015049 exon7 c.C769T p.R257C . . . ALS2CR11 151254 broad.mit.edu 36 2 202174820 202174820 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152525 exon4 c.C403T p.R135C . . . MPP4 58538 broad.mit.edu 36 2 202223107 202223107 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033066 exon19 c.G1408A p.E470K . . . MPP4 58538 broad.mit.edu 36 2 202260279 202260279 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033066 exon5 c.C340T p.L114F . . . ALS2 57679 broad.mit.edu 36 2 202299660 202299660 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020919 exon18 c.C3154T p.R1052C . . . ALS2 57679 broad.mit.edu 36 2 202330402 202330402 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020919 exon5 c.G1439A p.R480Q . . . NBEAL1 65065 broad.mit.edu 36 2 203708946 203708946 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114132 exon27 c.T4028C p.L1343S . . . RAPH1 65059 broad.mit.edu 36 2 204017887 204017887 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203365 exon15 c.C1881T p.S627S . . . RAPH1 65059 broad.mit.edu 36 2 204062641 204062641 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203365 exon4 c.G643A p.A215T . . . NRP2 8828 broad.mit.edu 36 2 206318720 206318720 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201266 exon10 c.C1647T p.F549F . . . NRP2 8828 broad.mit.edu 36 2 206338451 206338451 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201266 exon14 c.C2316T p.F772F . . . NDUFS1 4719 broad.mit.edu 36 2 206717951 206717951 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005006 exon9 c.T782G p.I261S . . . ZDBF2 57683 broad.mit.edu 36 2 206870307 206870307 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020923 exon4 c.A153G p.V51V . . . ZDBF2 57683 broad.mit.edu 36 2 206878317 206878317 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020923 exon5 c.G820T p.D274Y . . . ZDBF2 57683 broad.mit.edu 36 2 206882405 206882405 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020923 exon5 c.G4908A p.M1636I . . . DYTN 391475 broad.mit.edu 36 2 207235902 207235902 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001093730 exon11 c.A1603G p.M535V . . . CPO 130749 broad.mit.edu 36 2 207512629 207512629 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173077 exon1 c.T61C p.Y21H . . . CPO 130749 broad.mit.edu 36 2 207533888 207533888 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173077 exon6 c.G551A p.R184Q . . . PIKFYVE 200576 broad.mit.edu 36 2 208923773 208923773 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015040 exon37 c.G5468A p.R1823Q . . . MAP2 4133 broad.mit.edu 36 2 210266729 210266729 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002374 exon7 c.G1590T p.K530N . . . MAP2 4133 broad.mit.edu 36 2 210303341 210303341 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031847 exon13 c.C1484T p.A495V . . . UNC80 285175 broad.mit.edu 36 2 210366749 210366749 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182587 exon7 c.T859G p.S287A . . . C2orf67 151050 broad.mit.edu 36 2 210604491 210604491 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152519 exon9 c.G2054T p.R685I . . . APOB 338 broad.mit.edu 36 2 21081558 21081558 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000384 exon26 c.C11687T p.A3896V . . . APOB 338 broad.mit.edu 36 2 21083939 21083939 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000384 exon26 c.C9306A p.F3102L . . . APOB 338 broad.mit.edu 36 2 21088835 21088835 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000384 exon26 c.T4410G p.H1470Q . . . LANCL1 10314 broad.mit.edu 36 2 211045006 211045006 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136574 exon3 c.C121T p.R41W . . . CPS1 1373 broad.mit.edu 36 2 211168510 211168510 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001875 exon13 c.G1318T p.E440X . . . CPS1 1373 broad.mit.edu 36 2 211215532 211215532 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122634 exon15 c.G1686T p.V562V . . . ERBB4 2066 broad.mit.edu 36 2 212004040 212004040 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005235 exon21 c.G2518A p.V840I . . . ERBB4 2066 broad.mit.edu 36 2 212192197 212192197 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005235 exon19 c.A2251C p.K751Q . . . SPAG16 79582 broad.mit.edu 36 2 213923605 213923605 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024532 exon7 c.A753C p.V251V . . . SPAG16 79582 broad.mit.edu 36 2 214063018 214063018 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024532 exon10 c.G1029A p.K343K . . . ABCA12 26154 broad.mit.edu 36 2 215577179 215577179 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173076 exon20 c.C2682A p.L894L . . . ABCA12 26154 broad.mit.edu 36 2 215592531 215592531 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173076 exon12 c.A1522G p.K508E . . . XRCC5 7520 broad.mit.edu 36 2 216686093 216686093 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021141 exon2 c.G131A p.R44Q . . . CTDSP1 58190 broad.mit.edu 36 2 218977277 218977277 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182642 exon7 c.C668T p.S223L . . . USP37 57695 broad.mit.edu 36 2 219068727 219068727 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020935 exon14 c.C1472T p.A491V . . . RQCD1 9125 broad.mit.edu 36 2 219160628 219160628 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005444 exon5 c.G506A p.R169Q . . . ATG9A 79065 broad.mit.edu 36 2 219799879 219799879 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024085 exon4 c.G168T p.K56N . . . DES 1674 broad.mit.edu 36 2 219993877 219993877 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001927 exon5 c.G981A p.Q327Q . . . SPEG 10290 broad.mit.edu 36 2 220037553 220037553 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173476 exon4 c.G313A p.E105K . . . FARSB 10056 broad.mit.edu 36 2 223144954 223144954 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005687 exon17 c.G1650T p.E550D . . . ACSL3 2181 broad.mit.edu 36 2 223482051 223482051 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004457 exon4 c.G317A p.G106E . . . SCG2 7857 broad.mit.edu 36 2 224170598 224170598 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003469 exon2 c.G1647A p.E549E . . . SCG2 7857 broad.mit.edu 36 2 224171425 224171425 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003469 exon2 c.A820C p.K274Q . . . SERPINE2 5270 broad.mit.edu 36 2 224564931 224564931 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136530 exon4 c.T554G p.L185R . . . DOCK10 55619 broad.mit.edu 36 2 225347975 225347975 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014689 exon52 c.C5904T p.F1968F . . . DOCK10 55619 broad.mit.edu 36 2 225367844 225367844 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014689 exon45 c.C5150T p.S1717F . . . COL4A4 1286 broad.mit.edu 36 2 227667174 227667174 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000092 exon20 c.G1280T p.R427I . . . COL4A3 1285 broad.mit.edu 36 2 227817914 227817914 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000091 exon5 c.A283G p.I95V . . . AGFG1 3267 broad.mit.edu 36 2 228097775 228097775 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004504 exon5 c.C594T p.D198D . . . SPHKAP 80309 broad.mit.edu 36 2 228589845 228589845 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142644 exon7 c.C3969A p.I1323I . . . SPHKAP 80309 broad.mit.edu 36 2 228590425 228590425 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142644 exon7 c.C3389T p.S1130F . . . SPHKAP 80309 broad.mit.edu 36 2 228592492 228592492 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142644 exon7 c.C1322A p.S441Y . . . SPHKAP 80309 broad.mit.edu 36 2 228598464 228598464 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142644 exon5 c.C331A p.L111I . . . TRIP12 9320 broad.mit.edu 36 2 230340704 230340704 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004238 exon41 c.G5789A p.R1930Q . . . SP140 11262 broad.mit.edu 36 2 230884174 230884174 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007237 exon25 c.T2345G p.I782S . . . B3GNT7 93010 broad.mit.edu 36 2 231970825 231970825 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_145236 exon2 c.C151T p.P51S . . . NMUR1 10316 broad.mit.edu 36 2 232101782 232101782 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006056 exon2 c.C194A p.A65D . . . PDE6D 5147 broad.mit.edu 36 2 232311009 232311009 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002601 exon3 c.C223T p.R75C . . . GIGYF2 26058 broad.mit.edu 36 2 233321965 233321965 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103148 exon4 c.G196T p.E66X . . . GIGYF2 26058 broad.mit.edu 36 2 233417139 233417139 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103148 exon23 c.C3011T p.A1004V . . . USP40 55230 broad.mit.edu 36 2 234094431 234094431 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018218 exon15 c.T2062C p.Y688H . . . USP40 55230 broad.mit.edu 36 2 234124811 234124811 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018218 exon5 c.A582C p.L194L . . . UGT1A9 54600 broad.mit.edu 36 2 234246080 234246080 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021027 exon1 c.G761A p.R254Q . . . IQCA1 79781 broad.mit.edu 36 2 236937334 236937334 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024726 exon15 c.C1697A p.P566H . . . CXCR7 57007 broad.mit.edu 36 2 237154612 237154612 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020311 exon2 c.C765A p.F255L . . . COL6A3 1293 broad.mit.edu 36 2 237940661 237940661 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057166 exon8 c.G3087T p.K1029N . . . COL6A3 1293 broad.mit.edu 36 2 237942521 237942521 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057166 exon7 c.G2503A p.D835N . . . COL6A3 1293 broad.mit.edu 36 2 237950296 237950296 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057166 exon4 c.G1107T p.K369N . . . PRLH 51052 broad.mit.edu 36 2 238140033 238140033 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015893 exon1 c.T78C p.H26H . . . RBM44 375316 broad.mit.edu 36 2 238391856 238391856 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080504 exon3 c.G1558T p.A520S . . . SCLY 51540 broad.mit.edu 36 2 238641491 238641491 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016510 exon3 c.G249A p.A83A . . . AGXT 189 broad.mit.edu 36 2 241466174 241466174 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000030 exon10 c.C1005T p.I335I . . . ITSN2 50618 broad.mit.edu 36 2 24323245 24323245 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019595 exon27 c.A3229C p.K1077Q . . . ITSN2 50618 broad.mit.edu 36 2 24352109 24352109 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019595 exon17 c.G1977T p.K659N . . . ASXL2 55252 broad.mit.edu 36 2 25835972 25835972 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018263 exon8 c.G822A p.P274P . . . CAD 790 broad.mit.edu 36 2 27302120 27302120 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004341 exon12 c.G1664A p.R555H . . . TRIM54 57159 broad.mit.edu 36 2 27359202 27359202 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032546 exon1 c.C99A p.F33L . . . TRIM54 57159 broad.mit.edu 36 2 27375060 27375060 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032546 exon2 c.G290A p.R97Q . . . GTF3C2 2976 broad.mit.edu 36 2 27404846 27404846 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035521 exon16 c.G2249A p.R750Q . . . ZNF513 130557 broad.mit.edu 36 2 27456547 27456547 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144631 exon2 c.A128C p.D43A . . . PPM1G 5496 broad.mit.edu 36 2 27461122 27461122 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177983 exon5 c.T747C p.P249P . . . KRTCAP3 200634 broad.mit.edu 36 2 27520396 27520396 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168364 exon6 c.A692C p.E231A . . . C2orf16 84226 broad.mit.edu 36 2 27656070 27656070 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032266 exon1 c.C3127A p.L1043I . . . ZNF512 84450 broad.mit.edu 36 2 27697532 27697532 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032434 exon14 c.C1404T p.F468F . . . SUPT7L 9913 broad.mit.edu 36 2 27729944 27729944 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014860 exon6 c.G1157A p.S386N . . . TRMT61B 55006 broad.mit.edu 36 2 28941421 28941421 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017910 exon2 c.C768T p.G256G . . . C2orf71 388939 broad.mit.edu 36 2 29149298 29149298 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029883 exon1 c.C1334A p.S445Y . . . C2orf71 388939 broad.mit.edu 36 2 29150102 29150102 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029883 exon1 c.C530T p.P177L . . . CLIP4 79745 broad.mit.edu 36 2 29208544 29208544 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024692 exon4 c.T296C p.V99A . . . ALK 238 broad.mit.edu 36 2 29373323 29373323 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004304 exon9 c.C1752T p.V584V . . . XDH 7498 broad.mit.edu 36 2 31450300 31450300 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000379 exon16 c.C1629T p.F543F . . . BIRC6 57448 broad.mit.edu 36 2 32512314 32512314 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016252 exon13 c.A3347C p.N1116T . . . BIRC6 57448 broad.mit.edu 36 2 32543285 32543285 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016252 exon25 c.G5146A p.V1716I . . . BIRC6 57448 broad.mit.edu 36 2 32546106 32546106 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016252 exon27 c.G5366T p.R1789I . . . BIRC6 57448 broad.mit.edu 36 2 32557233 32557233 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016252 exon36 c.G7095A p.T2365T . . . BIRC6 57448 broad.mit.edu 36 2 32578383 32578383 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016252 exon46 c.G8734A p.E2912K . . . BIRC6 57448 broad.mit.edu 36 2 32696449 32696449 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016252 exon74 c.G14548T p.E4850X . . . VIT 5212 broad.mit.edu 36 2 36886242 36886242 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177969 exon13 c.C1275A p.F425L . . . ALLC 55821 broad.mit.edu 36 2 3703982 3703982 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018436 exon4 c.G134A p.W45X . . . SULT6B1 391365 broad.mit.edu 36 2 37252193 37252193 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001032377 exon6 c.C555A p.F185L . . . CEBPZ 10153 broad.mit.edu 36 2 37309006 37309006 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005760 exon2 c.C834T p.S278S . . . C2orf56 55471 broad.mit.edu 36 2 37323310 37323310 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144736 exon6 c.T651G p.F217L . . . CYP1B1 1545 broad.mit.edu 36 2 38151457 38151457 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000104 exon3 c.C1544A p.S515X . . . GEMIN6 79833 broad.mit.edu 36 2 38862483 38862483 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024775 exon3 c.T449G p.I150S . . . DHX57 90957 broad.mit.edu 36 2 38887247 38887247 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198963 exon22 c.C3774T p.N1258N . . . CDKL4 344387 broad.mit.edu 36 2 39259851 39259851 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009565 exon8 c.G908T p.R303I . . . THUMPD2 80745 broad.mit.edu 36 2 39850480 39850480 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025264 exon3 c.A546C p.E182D . . . EML4 27436 broad.mit.edu 36 2 42375772 42375772 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145076 exon11 c.A1048C p.T350P . . . THADA 63892 broad.mit.edu 36 2 43655006 43655006 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083953 exon11 c.C1702A p.L568I . . . LOC728819 728819 broad.mit.edu 36 2 43756023 43756023 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101330 exon1 c.G943T p.D315Y . . . PLEKHH2 130271 broad.mit.edu 36 2 43824510 43824510 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172069 exon23 c.G3433T p.E1145X . . . C2orf34 79823 broad.mit.edu 36 2 44453393 44453393 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024766 exon2 c.G173A p.R58Q . . . EPAS1 2034 broad.mit.edu 36 2 46459322 46459322 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A A A A Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001430 exon11 c.A1466G p.Y489C . . . KLRAQ1 129285 broad.mit.edu 36 2 48535305 48535305 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135629 exon3 c.G194A p.R65Q . . . LHCGR 3973 broad.mit.edu 36 2 48768959 48768959 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000233 exon11 c.C1481T p.S494F . . . LHCGR 3973 broad.mit.edu 36 2 48804270 48804270 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000233 exon5 c.C453T p.F151F . . . FSHR 2492 broad.mit.edu 36 2 49071227 49071227 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181446 exon5 c.C428A p.S143Y . . . NRXN1 9378 broad.mit.edu 36 2 50002637 50002637 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138735 exon6 c.G1278A p.A426A . . . NRXN1 9378 broad.mit.edu 36 2 50172104 50172104 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138735 exon3 c.T474G p.V158V . . . NRXN1 9378 broad.mit.edu 36 2 50701848 50701848 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135659 exon8 c.C1277T p.S426L . . . CCDC88A 55704 broad.mit.edu 36 2 55415342 55415342 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135597 exon15 c.C2119T p.R707X . . . BCL11A 53335 broad.mit.edu 36 2 60626634 60626634 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138559 exon2 c.T361A p.C121S . . . CCT4 10575 broad.mit.edu 36 2 61952890 61952890 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006430 exon12 c.G1322A p.R441Q . . . B3GNT2 10678 broad.mit.edu 36 2 62303237 62303237 + Silent SNP C G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006577 exon2 c.C378G p.R126R . . . B3GNT2 10678 broad.mit.edu 36 2 62303384 62303384 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006577 exon2 c.G525A p.T175T . . . EHBP1 23301 broad.mit.edu 36 2 63023484 63023484 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142614 exon10 c.G1313T p.R438I . . . C2orf86 51057 broad.mit.edu 36 2 63485043 63485043 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015910 exon10 c.C1079T p.S360L . . . UGP2 7360 broad.mit.edu 36 2 63936997 63936997 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001521 exon2 c.C40T p.R14W . . . AFTPH 54812 broad.mit.edu 36 2 64633160 64633160 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017657 exon2 c.G1048T p.E350X . . . AFTPH 54812 broad.mit.edu 36 2 64633656 64633656 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017657 exon2 c.G1544T p.R515I . . . CEP68 23177 broad.mit.edu 36 2 65152496 65152496 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015147 exon3 c.C762A p.F254L . . . SPRED2 200734 broad.mit.edu 36 2 65415259 65415259 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181784 exon3 c.C357T p.I119I . . . PPP3R1 5534 broad.mit.edu 36 2 68267270 68267270 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000945 exon5 c.A299G p.D100G . . . CNRIP1 25927 broad.mit.edu 36 2 68397819 68397819 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015463 exon2 c.C304T p.R102W . . . PROKR1 10887 broad.mit.edu 36 2 68735648 68735648 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138964 exon2 c.C618T p.L206L . . . ARHGAP25 9938 broad.mit.edu 36 2 68894037 68894037 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166276 exon5 c.G768A p.T256T . . . BMP10 27302 broad.mit.edu 36 2 68946324 68946324 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014482 exon2 c.C1218T p.V406V . . . ASPRV1 151516 broad.mit.edu 36 2 70041631 70041631 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152792 exon1 c.G694A p.D232N . . . TIA1 7072 broad.mit.edu 36 2 70297555 70297555 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022037 exon7 c.C517T p.R173X . . . ADD2 119 broad.mit.edu 36 2 70753526 70753526 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001185054 exon15 c.C1862T p.S621F . . . ADD2 119 broad.mit.edu 36 2 70753917 70753917 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017488 exon15 c.C1791A p.F597L . . . ATP6V1B1 525 broad.mit.edu 36 2 71043481 71043481 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001692 exon9 c.G852T p.E284D . . . NAGK 55577 broad.mit.edu 36 2 71154160 71154160 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017567 exon6 c.C645T p.D215D . . . MPHOSPH10 10199 broad.mit.edu 36 2 71214114 71214114 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005791 exon2 c.G668A p.R223Q . . . ZNF638 27332 broad.mit.edu 36 2 71484555 71484555 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014497 exon17 c.T2877G p.F959L . . . DYSF 8291 broad.mit.edu 36 2 71670321 71670321 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130982 exon32 c.G3535A p.D1179N . . . SMYD5 10322 broad.mit.edu 36 2 73300704 73300704 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006062 exon3 c.A223G p.R75G . . . ALMS1 7840 broad.mit.edu 36 2 73489320 73489320 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015120 exon2 c.A387C p.Q129H . . . ALMS1 7840 broad.mit.edu 36 2 73571549 73571549 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015120 exon10 c.T8952C p.F2984F . . . ALMS1 7840 broad.mit.edu 36 2 73572089 73572089 + Silent SNP C T T rs45607436 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015120 exon10 c.C9492T p.F3164F . . . ALMS1 7840 broad.mit.edu 36 2 73681842 73681842 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015120 exon19 c.T11882G p.F3961C . . . NAT8B 51471 broad.mit.edu 36 2 73781819 73781819 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016347 exon1 c.G122A p.R41Q . . . MTHFD2 10797 broad.mit.edu 36 2 74290648 74290648 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006636 exon5 c.T634C p.L212L . . . DCTN1 1639 broad.mit.edu 36 2 74443640 74443640 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023019 exon24 c.G3116A p.R1039H . . . DCTN1 1639 broad.mit.edu 36 2 74447697 74447697 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023019 exon15 c.C1897T p.L633L . . . INO80B 83444 broad.mit.edu 36 2 74536871 74536871 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031288 exon4 c.G504T p.K168N . . . PCGF1 84759 broad.mit.edu 36 2 74587496 74587496 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032673 exon3 c.T223C p.Y75H . . . LRRTM4 80059 broad.mit.edu 36 2 77599522 77599522 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024993 exon3 c.G981T p.K327N . . . REG1A 5967 broad.mit.edu 36 2 79202262 79202262 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002909 exon3 c.G131A p.R44H . . . CTNNA2 1496 broad.mit.edu 36 2 80500193 80500193 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004389 exon9 c.G1249T p.E417X . . . POLR1A 25885 broad.mit.edu 36 2 86169467 86169467 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015425 exon5 c.C578T p.A193V . . . VPS24 51652 broad.mit.edu 36 2 86610001 86610001 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016079 exon3 c.G137A p.R46Q . . . RNF103 7844 broad.mit.edu 36 2 86685622 86685622 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198951 exon5 c.G901A p.E301K . . . CD8B 926 broad.mit.edu 36 2 86896274 86896274 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178100 exon4 c.G572T p.R191I . . . C2orf51 200523 broad.mit.edu 36 2 88609693 88609693 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152670 exon4 c.G129T p.K43N . . . ASAP2 8853 broad.mit.edu 36 2 9446112 9446112 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135191 exon22 c.G2369A p.R790Q . . . CPSF3 51692 broad.mit.edu 36 2 9487505 9487505 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016207 exon3 c.C117T p.L39L . . . MAL 4118 broad.mit.edu 36 2 95079073 95079073 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002371 exon3 c.C282T p.T94T . . . ZNF2 7549 broad.mit.edu 36 2 95207023 95207023 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021088 exon3 c.A102G p.I34M . . . ZNF2 7549 broad.mit.edu 36 2 95211556 95211556 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017396 exon4 c.G1130A p.R377H . . . PROM2 150696 broad.mit.edu 36 2 95309359 95309359 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144707 exon11 c.C1314T p.F438F . . . ADAM17 6868 broad.mit.edu 36 2 9552285 9552285 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003183 exon15 c.G1846A p.D616N . . . TRIM43 129868 broad.mit.edu 36 2 95624527 95624527 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138800 exon3 c.G414T p.E138D . . . SNRNP200 23020 broad.mit.edu 36 2 96316220 96316220 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014014 exon28 c.C3762T p.F1254F . . . SNRNP200 23020 broad.mit.edu 36 2 96328829 96328829 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014014 exon6 c.G694A p.D232N . . . KIAA1310 55683 broad.mit.edu 36 2 96631205 96631205 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001115016 exon20 c.C2518T p.R840C . . . TMEM131 23505 broad.mit.edu 36 2 97741918 97741918 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015348 exon40 c.C5237T p.S1746L . . . VWA3B 200403 broad.mit.edu 36 2 98075993 98075993 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144992 exon2 c.G6T p.E2D . . . UNC50 25972 broad.mit.edu 36 2 98592862 98592862 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014044 exon2 c.C208T p.R70X . . . LIPT1 51601 broad.mit.edu 36 2 99145044 99145044 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145197 exon4 c.C192A p.F64L . . . REV1 51455 broad.mit.edu 36 2 99387387 99387387 + Silent SNP C T T rs2290260 byCluster TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016316 exon18 c.G2997A p.S999S . . . REV1 51455 broad.mit.edu 36 2 99418799 99418799 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016316 exon7 c.G1250A p.S417N . . . MIR216A 406998 broad.mit.edu 36 2 56069590 56069590 + RNA SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . FANCD2 2177 broad.mit.edu 36 3 10051460 10051460 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033084 exon5 c.C355T p.R119C . . . FILIP1L 11259 broad.mit.edu 36 3 101131438 101131438 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182909 exon3 c.G378A p.A126A . . . FILIP1L 11259 broad.mit.edu 36 3 101132469 101132469 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182909 exon2 c.A86T p.K29I . . . GPR128 84873 broad.mit.edu 36 3 101848115 101848115 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032787 exon10 c.G1123T p.E375X . . . TFG 10342 broad.mit.edu 36 3 101934145 101934145 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006070 exon5 c.C519A p.N173K . . . ABI3BP 25890 broad.mit.edu 36 3 101979905 101979905 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015429 exon26 c.C2113T p.R705C . . . ABI3BP 25890 broad.mit.edu 36 3 101991050 101991050 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015429 exon24 c.C1967T p.A656V . . . ABI3BP 25890 broad.mit.edu 36 3 102053433 102053433 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015429 exon13 c.C1201T p.P401S . . . ABI3BP 25890 broad.mit.edu 36 3 102087844 102087844 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015429 exon5 c.C496T p.R166C . . . SENP7 57337 broad.mit.edu 36 3 102534347 102534347 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020654 exon18 c.A2530C p.N844H . . . SENP7 57337 broad.mit.edu 36 3 102573649 102573649 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020654 exon7 c.G689A p.R230Q . . . RG9MTD1 54931 broad.mit.edu 36 3 102766902 102766902 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017819 exon2 c.C587T p.A196V . . . ATP2B2 491 broad.mit.edu 36 3 10362721 10362721 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001683 exon14 c.C2370T p.F790F . . . CBLB 868 broad.mit.edu 36 3 106921646 106921646 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170662 exon10 c.G1342A p.D448N . . . MYH15 22989 broad.mit.edu 36 3 109593341 109593341 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014981 exon38 c.G5446A p.A1816T . . . MYH15 22989 broad.mit.edu 36 3 109609898 109609898 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014981 exon33 c.G4599T p.K1533N . . . MYH15 22989 broad.mit.edu 36 3 109630346 109630346 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014981 exon28 c.G3445A p.A1149T . . . MYH15 22989 broad.mit.edu 36 3 109701799 109701799 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014981 exon5 c.C412A p.L138I . . . MYH15 22989 broad.mit.edu 36 3 109703352 109703352 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014981 exon4 c.C296A p.P99H . . . MORC1 27136 broad.mit.edu 36 3 110208621 110208621 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014429 exon18 c.T1712G p.F571C . . . MORC1 27136 broad.mit.edu 36 3 110271175 110271175 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014429 exon9 c.G809A p.R270K . . . SLC6A1 6529 broad.mit.edu 36 3 11051225 11051225 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003042 exon15 c.C1536A p.F512L . . . TMPRSS7 344805 broad.mit.edu 36 3 113251421 113251421 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A A A A Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001042575 exon6 c.A622G p.T208A . . . TMPRSS7 344805 broad.mit.edu 36 3 113278630 113278630 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042575 exon14 c.C1795T p.R599C . . . SLC9A10 285335 broad.mit.edu 36 3 113409898 113409898 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_183061 exon16 c.T1803C p.F601F . . . BOC 91653 broad.mit.edu 36 3 114487025 114487025 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033254 exon19 c.C3080A p.A1027D . . . SPICE1 152185 broad.mit.edu 36 3 114669928 114669928 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144718 exon10 c.G903A p.P301P . . . SPICE1 152185 broad.mit.edu 36 3 114708086 114708086 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144718 exon2 c.G57A p.P19P . . . SIDT1 54847 broad.mit.edu 36 3 114805562 114805562 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017699 exon13 c.T1329G p.I443M . . . KIAA2018 205717 broad.mit.edu 36 3 114861225 114861225 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001009899 exon7 c.C1994T p.S665F . . . KIAA2018 205717 broad.mit.edu 36 3 114861412 114861412 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009899 exon7 c.C1807T p.R603X . . . NAA50 80218 broad.mit.edu 36 3 114923375 114923375 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025146 exon5 c.C432T p.P144P . . . GRAMD1C 54762 broad.mit.edu 36 3 115137909 115137909 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017577 exon14 c.A1563C p.E521D . . . ZDHHC23 254887 broad.mit.edu 36 3 115150451 115150451 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173570 exon2 c.G112A p.V38M . . . ZDHHC23 254887 broad.mit.edu 36 3 115155754 115155754 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173570 exon3 c.G679A p.A227T . . . PLA1A 51365 broad.mit.edu 36 3 120817628 120817628 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015900 exon6 c.C744T p.F248F . . . GSK3B 2932 broad.mit.edu 36 3 121078012 121078012 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002093 exon8 c.G847T p.E283X . . . SYN2 6854 broad.mit.edu 36 3 12157164 12157164 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003178 exon3 c.C388T p.R130W . . . NDUFB4 4710 broad.mit.edu 36 3 121802666 121802666 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004547 exon2 c.C199T p.R67C . . . HGD 3081 broad.mit.edu 36 3 121845873 121845873 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000187 exon10 c.C757T p.L253L . . . STXBP5L 9515 broad.mit.edu 36 3 122243307 122243307 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014980 exon4 c.T358G p.L120V . . . STXBP5L 9515 broad.mit.edu 36 3 122440623 122440623 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014980 exon13 c.G1300A p.V434I . . . POLQ 10721 broad.mit.edu 36 3 122689112 122689112 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199420 exon16 c.A5356C p.S1786R . . . GOLGB1 2804 broad.mit.edu 36 3 122897193 122897193 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004487 exon13 c.C4852A p.L1618I . . . GOLGB1 2804 broad.mit.edu 36 3 122898366 122898366 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004487 exon13 c.G3679T p.E1227X . . . GOLGB1 2804 broad.mit.edu 36 3 122916442 122916442 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004487 exon10 c.G1345A p.A449T . . . CCDC58 131076 broad.mit.edu 36 3 123569787 123569787 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017928 exon3 c.A250C p.N84H . . . KPNA1 3836 broad.mit.edu 36 3 123698075 123698075 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002264 exon2 c.C28T p.R10C . . . DTX3L 151636 broad.mit.edu 36 3 123767443 123767443 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138287 exon2 c.G235A p.E79K . . . PARP15 165631 broad.mit.edu 36 3 123833728 123833728 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152615 exon6 c.G842A p.R281Q . . . ADCY5 111 broad.mit.edu 36 3 124501682 124501682 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183357 exon15 c.G2875A p.D959N . . . KALRN 8997 broad.mit.edu 36 3 125859316 125859316 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024660 exon41 c.A6009G p.R2003R . . . KALRN 8997 broad.mit.edu 36 3 125873423 125873423 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024660 exon48 c.C6927T p.F2309F . . . ITGB5 3693 broad.mit.edu 36 3 125965248 125965248 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002213 exon15 c.A2312C p.N771T . . . MUC13 56667 broad.mit.edu 36 3 126109870 126109870 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033049 exon11 c.G1350A p.T450T . . . SLC12A8 84561 broad.mit.edu 36 3 126322173 126322173 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195483 exon6 c.G784A p.A262T . . . CAND2 23066 broad.mit.edu 36 3 12829812 12829812 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162499 exon7 c.G931A p.D311N . . . KBTBD12 166348 broad.mit.edu 36 3 129125351 129125351 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207335 exon1 c.G757A p.A253T . . . SEC61A1 29927 broad.mit.edu 36 3 129271118 129271118 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013336 exon12 c.A1354G p.T452A . . . EEFSEC 60678 broad.mit.edu 36 3 129543086 129543086 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021937 exon5 c.C1107T p.F369F . . . RPN1 6184 broad.mit.edu 36 3 129823778 129823778 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002950 exon9 c.G1560A p.E520E . . . RAB7A 7879 broad.mit.edu 36 3 130008011 130008011 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004637 exon4 c.T287G p.F96C . . . RAB43 339122 broad.mit.edu 36 3 130336440 130336440 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199469 exon9 c.G532A p.D178N . . . MBD4 8930 broad.mit.edu 36 3 130634673 130634673 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003925 exon6 c.G1519A p.G507S . . . IFT122 55764 broad.mit.edu 36 3 130660138 130660138 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052989 exon4 c.G200A p.R67H . . . PLXND1 23129 broad.mit.edu 36 3 130766944 130766944 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015103 exon25 c.C4450T p.R1484W . . . PLXND1 23129 broad.mit.edu 36 3 130772345 130772345 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015103 exon19 c.G3724A p.A1242T . . . PLXND1 23129 broad.mit.edu 36 3 130773295 130773295 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015103 exon16 c.C3160T p.R1054W . . . COL6A5 256076 broad.mit.edu 36 3 131641913 131641913 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153264 exon35 c.C6041A p.S2014Y . . . COL6A6 131873 broad.mit.edu 36 3 131766538 131766538 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102608 exon3 c.C672T p.G224G . . . COL6A6 131873 broad.mit.edu 36 3 131769739 131769739 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102608 exon5 c.G2002A p.D668N . . . PIK3R4 30849 broad.mit.edu 36 3 131883108 131883108 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014602 exon17 c.G3625A p.E1209K . . . PIK3R4 30849 broad.mit.edu 36 3 131908491 131908491 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014602 exon11 c.T2712G p.T904T . . . PIK3R4 30849 broad.mit.edu 36 3 131908594 131908594 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014602 exon11 c.A2609C p.N870T . . . PIK3R4 30849 broad.mit.edu 36 3 131931919 131931919 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014602 exon5 c.A1508C p.K503T . . . PIK3R4 30849 broad.mit.edu 36 3 131935492 131935492 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014602 exon4 c.G1040A p.R347Q . . . PIK3R4 30849 broad.mit.edu 36 3 131935602 131935602 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014602 exon4 c.G930A p.Q310Q . . . ACPP 55 broad.mit.edu 36 3 133533736 133533736 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099 exon4 c.G314A p.R105Q . . . CNTN6 27255 broad.mit.edu 36 3 1346514 1346514 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014461 exon11 c.T1259G p.F420C . . . STAG1 10274 broad.mit.edu 36 3 137600322 137600322 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005862 exon22 c.C2236T p.L746F . . . TMEM22 80723 broad.mit.edu 36 3 138056732 138056732 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001097599 exon2 c.C740A p.S247Y . . . CNTN6 27255 broad.mit.edu 36 3 1390408 1390408 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014461 exon15 c.G1907A p.R636Q . . . ARMC8 25852 broad.mit.edu 36 3 139411368 139411368 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213654 exon3 c.G23A p.R8H . . . ARMC8 25852 broad.mit.edu 36 3 139436586 139436586 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213654 exon8 c.T507G p.I169M . . . CEP70 80321 broad.mit.edu 36 3 139730954 139730954 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024491 exon9 c.G733A p.D245N . . . PRR23B 389151 broad.mit.edu 36 3 140221937 140221937 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013650 exon1 c.C257T p.S86L . . . CNTN6 27255 broad.mit.edu 36 3 1419107 1419107 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014461 exon22 c.A2923C p.R975R . . . CNTN6 27255 broad.mit.edu 36 3 1420053 1420053 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014461 exon23 c.C3038A p.S1013Y . . . XRN1 54464 broad.mit.edu 36 3 143620365 143620365 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019001 exon11 c.G1222A p.E408K . . . ATR 545 broad.mit.edu 36 3 143749433 143749433 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184 exon16 c.G3181T p.E1061X . . . ATR 545 broad.mit.edu 36 3 143757491 143757491 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184 exon10 c.T2259C p.C753C . . . PLS1 5357 broad.mit.edu 36 3 143913074 143913074 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002670 exon15 c.A1671C p.I557I . . . TRPC1 7220 broad.mit.edu 36 3 143982508 143982508 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003304 exon5 c.G805A p.E269K . . . SR140 23350 broad.mit.edu 36 3 144256528 144256528 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080415 exon27 c.G2828A p.R943Q . . . SLC9A9 285195 broad.mit.edu 36 3 144668687 144668687 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173653 exon12 c.C1351T p.R451W . . . C3orf58 205428 broad.mit.edu 36 3 145187364 145187364 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173552 exon2 c.G947T p.R316I . . . C3orf19 51244 broad.mit.edu 36 3 14672123 14672123 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016474 exon3 c.G231T p.K77N . . . C3orf19 51244 broad.mit.edu 36 3 14683363 14683363 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016474 exon7 c.G629T p.R210I . . . PLOD2 5352 broad.mit.edu 36 3 147292294 147292294 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000935 exon8 c.G862A p.D288N . . . PLSCR2 57047 broad.mit.edu 36 3 147658918 147658918 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020359 exon4 c.C70A p.L24I . . . PLSCR1 5359 broad.mit.edu 36 3 147722107 147722107 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021105 exon7 c.A652G p.T218A . . . PLSCR5 389158 broad.mit.edu 36 3 147790135 147790135 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085420 exon6 c.C772A p.L258I . . . ZIC4 84107 broad.mit.edu 36 3 148591648 148591648 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168378 exon4 c.C914T p.S305L . . . CP 1356 broad.mit.edu 36 3 150379065 150379065 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000096 exon16 c.G2705T p.R902I . . . CP 1356 broad.mit.edu 36 3 150413146 150413146 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000096 exon2 c.G176A p.G59D . . . SIAH2 6478 broad.mit.edu 36 3 151942849 151942849 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005067 exon2 c.C744T p.I248I SIAH2,lung,NS,Substitution - Missense,-1 . . P2RY14 9934 broad.mit.edu 36 3 152413840 152413840 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014879 exon3 c.G955C p.D319H . . . P2RY13 53829 broad.mit.edu 36 3 152529027 152529027 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176894 exon2 c.C507A p.F169L . . . P2RY12 64805 broad.mit.edu 36 3 152539188 152539188 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022788 exon3 c.G136A p.A46T . . . MED12L 116931 broad.mit.edu 36 3 152565513 152565513 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053002 exon20 c.C2909T p.S970L . . . MED12L 116931 broad.mit.edu 36 3 152577479 152577479 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053002 exon28 c.C4034T p.S1345F . . . CAPN7 23473 broad.mit.edu 36 3 15258700 15258700 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014296 exon16 c.G1800A p.A600A . . . IGSF10 285313 broad.mit.edu 36 3 152637453 152637453 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178145 exon2 c.G1667A p.R556Q . . . IGSF10 285313 broad.mit.edu 36 3 152637855 152637855 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178145 exon2 c.C1265A p.S422Y . . . IGSF10 285313 broad.mit.edu 36 3 152646923 152646923 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178822 exon4 c.C3536T p.S1179L . . . PLCH1 23007 broad.mit.edu 36 3 156765594 156765594 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130960 exon7 c.G837A p.T279T . . . ANKRD28 23243 broad.mit.edu 36 3 15701955 15701955 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015199 exon21 c.C2081T p.A694V . . . SLC33A1 9197 broad.mit.edu 36 3 157028718 157028718 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004733 exon6 c.C1625T p.S542L . . . SLC33A1 9197 broad.mit.edu 36 3 157054112 157054112 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004733 exon1 c.A369G p.L123L . . . GMPS 8833 broad.mit.edu 36 3 157111315 157111315 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003875 exon6 c.G667T p.E223X . . . RARRES1 5918 broad.mit.edu 36 3 159898294 159898294 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206963 exon6 c.G752A p.R251H . . . SMC4 10051 broad.mit.edu 36 3 161603161 161603161 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002800 exon4 c.T322G p.F108V . . . SMC4 10051 broad.mit.edu 36 3 161623964 161623964 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002800 exon14 c.T2077G p.L693V . . . KPNA4 3840 broad.mit.edu 36 3 161737306 161737306 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002268 exon2 c.G86A p.R29Q . . . PPM1L 151742 broad.mit.edu 36 3 162269499 162269499 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139245 exon4 c.C943T p.R315X . . . NMD3 51068 broad.mit.edu 36 3 162435215 162435215 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015938 exon6 c.A364C p.N122H . . . RFTN1 23180 broad.mit.edu 36 3 16394328 16394328 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015150 exon5 c.G727T p.E243X . . . SI 6476 broad.mit.edu 36 3 166199033 166199033 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001041 exon38 c.A4529C p.K1510T . . . SI 6476 broad.mit.edu 36 3 166259563 166259563 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001041 exon12 c.A1280G p.D427G . . . ZBBX 79740 broad.mit.edu 36 3 168506401 168506401 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024687 exon17 c.C1449T p.I483I . . . ZBBX 79740 broad.mit.edu 36 3 168534443 168534443 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024687 exon10 c.G553A p.V185I . . . LRRIQ4 344657 broad.mit.edu 36 3 171033565 171033565 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080460 exon4 c.A1430C p.N477T . . . LRRC31 79782 broad.mit.edu 36 3 171040529 171040529 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024727 exon9 c.G1594A p.E532K . . . LRRC31 79782 broad.mit.edu 36 3 171070222 171070222 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024727 exon1 c.A68C p.K23T . . . PRKCI 5584 broad.mit.edu 36 3 171496413 171496413 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002740 exon15 c.C1438T p.R480C . . . SLC2A2 6514 broad.mit.edu 36 3 172214996 172214996 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000340 exon3 c.G327T p.M109I . . . TNIK 23043 broad.mit.edu 36 3 172284806 172284806 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161565 exon24 c.C2749T p.L917L . . . PLD1 5337 broad.mit.edu 36 3 172812907 172812907 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130081 exon24 c.A2624G p.N875S . . . PLD1 5337 broad.mit.edu 36 3 172892890 172892890 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130081 exon13 c.G1264A p.E422K . . . NCEH1 57552 broad.mit.edu 36 3 173834516 173834516 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146276 exon5 c.C790A p.L264I . . . TBL1XR1 79718 broad.mit.edu 36 3 178252126 178252126 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024665 exon5 c.A287C p.Q96P . . . ZMAT3 64393 broad.mit.edu 36 3 180225677 180225677 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152240 exon7 c.G689T p.R230I . . . PEX5L 51555 broad.mit.edu 36 3 181098694 181098694 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016559 exon3 c.C128T p.A43V . . . CCDC39 339829 broad.mit.edu 36 3 181842527 181842527 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181426 exon13 c.A1822G p.T608A . . . DNAJC19 131118 broad.mit.edu 36 3 182185172 182185172 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145261 exon6 c.G301A p.A101T . . . SOX2 6657 broad.mit.edu 36 3 182913502 182913502 + Silent SNP G C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_003106 exon1 c.G660C p.S220S . . . ATP11B 23200 broad.mit.edu 36 3 184059725 184059725 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014616 exon12 c.G1084A p.E362K . . . ATP11B 23200 broad.mit.edu 36 3 184074440 184074440 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014616 exon19 c.T2195G p.L732R . . . MCF2L2 23101 broad.mit.edu 36 3 184406632 184406632 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015078 exon24 c.G2777A p.R926Q . . . MCF2L2 23101 broad.mit.edu 36 3 184539308 184539308 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015078 exon5 c.C460T p.R154X . . . KLHL6 89857 broad.mit.edu 36 3 184694593 184694593 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130446 exon5 c.A1318G p.T440A . . . ABCC5 10057 broad.mit.edu 36 3 185153670 185153670 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005688 exon18 c.C2565T p.G855G . . . HTR3E 285242 broad.mit.edu 36 3 185305900 185305900 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182589 exon5 c.C756T p.I252I . . . ECE2 9718 broad.mit.edu 36 3 185491906 185491906 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014693 exon18 c.C2460T p.F820F . . . EIF4G1 1981 broad.mit.edu 36 3 185522001 185522001 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182917 exon9 c.G935A p.R312H . . . MAP3K13 9175 broad.mit.edu 36 3 186629354 186629354 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004721 exon2 c.G291A p.V97V . . . DGKG 1608 broad.mit.edu 36 3 187388722 187388722 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080744 exon21 c.T1983C p.G661G . . . DGKG 1608 broad.mit.edu 36 3 187469342 187469342 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080744 exon12 c.A1058T p.K353I . . . HRG 3273 broad.mit.edu 36 3 187878219 187878219 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000412 exon7 c.T1431G p.F477L . . . KNG1 3827 broad.mit.edu 36 3 187942182 187942182 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102416 exon10 c.A1303C p.K435Q . . . BCL6 604 broad.mit.edu 36 3 188926039 188926039 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130845 exon8 c.G1781A p.R594Q . . . LEPREL1 55214 broad.mit.edu 36 3 191158395 191158395 + Nonstop_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134418 exon15 c.A1584C p.X528Y . . . ATP13A5 344905 broad.mit.edu 36 3 194475743 194475743 + Silent SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198505 exon30 c.A3439C p.R1147R . . . ATP13A4 84239 broad.mit.edu 36 3 194603261 194603261 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032279 exon30 c.G3465T p.Q1155H . . . CPN2 1370 broad.mit.edu 36 3 195544815 195544815 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080513 exon2 c.C312A p.V104V . . . LRRC15 131578 broad.mit.edu 36 3 195562743 195562743 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130830 exon2 c.G325A p.A109T . . . GP5 2814 broad.mit.edu 36 3 195599826 195599826 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004488 exon2 c.G475A p.D159N . . . GP5 2814 broad.mit.edu 36 3 195599953 195599953 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004488 exon2 c.G348A p.A116A . . . RNF168 165918 broad.mit.edu 36 3 197683118 197683118 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152617 exon6 c.T1685G p.V562G . . . RNF168 165918 broad.mit.edu 36 3 197714233 197714233 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152617 exon1 c.C209A p.S70Y . . . SENP5 205564 broad.mit.edu 36 3 198096852 198096852 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152699 exon2 c.A403C p.N135H . . . KIAA0226 9711 broad.mit.edu 36 3 198911922 198911922 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014687 exon7 c.G1220A p.R407H . . . FYTTD1 84248 broad.mit.edu 36 3 198967715 198967715 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011537 exon3 c.G47A p.R16Q . . . LRCH3 84859 broad.mit.edu 36 3 199043481 199043481 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032773 exon8 c.C998A p.S333X . . . EFHB 151651 broad.mit.edu 36 3 19931853 19931853 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144715 exon5 c.G1234T p.E412X . . . EFHB 151651 broad.mit.edu 36 3 19950026 19950026 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144715 exon1 c.C489T p.F163F . . . EFHB 151651 broad.mit.edu 36 3 19950207 19950207 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144715 exon1 c.C308A p.S103Y . . . SGOL1 151648 broad.mit.edu 36 3 20177669 20177669 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199256 exon8 c.C811T p.R271X . . . ZNF385D 79750 broad.mit.edu 36 3 21527379 21527379 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024697 exon4 c.C417A p.I139I . . . ZNF385D 79750 broad.mit.edu 36 3 21527478 21527478 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024697 exon4 c.G318T p.K106N . . . UBE2E2 7325 broad.mit.edu 36 3 23516169 23516169 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152653 exon4 c.C294A p.V98V . . . NR1D2 9975 broad.mit.edu 36 3 23972609 23972609 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005126 exon3 c.G361A p.E121K . . . RARB 5915 broad.mit.edu 36 3 25517764 25517764 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000965 exon3 c.C394T p.R132X . . . NGLY1 55768 broad.mit.edu 36 3 25780749 25780749 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145294 exon3 c.C178T p.R60C . . . EOMES 8320 broad.mit.edu 36 3 27736754 27736754 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005442 exon2 c.C948T p.F316F . . . GLB1 2720 broad.mit.edu 36 3 33089140 33089140 + Missense_Mutation SNP G A A rs72555358 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135602 exon2 c.C145T p.R49C . . . SUSD5 26032 broad.mit.edu 36 3 33170093 33170093 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015551 exon5 c.T1035C p.G345G . . . SUSD5 26032 broad.mit.edu 36 3 33230463 33230463 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015551 exon2 c.C251T p.A84V . . . ARPP21 10777 broad.mit.edu 36 3 35704376 35704376 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016300 exon6 c.A403C p.K135Q . . . ARPP21 10777 broad.mit.edu 36 3 35738220 35738220 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016300 exon14 c.G1115A p.R372H . . . TRANK1 9881 broad.mit.edu 36 3 36868267 36868267 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014831 exon14 c.A4702C p.K1568Q . . . GOLGA4 2803 broad.mit.edu 36 3 37354199 37354199 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172713 exon19 c.G6411A p.S2137S . . . ITGA9 3680 broad.mit.edu 36 3 37793981 37793981 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002207 exon24 c.C2636T p.A879V . . . CTDSPL 10217 broad.mit.edu 36 3 37963698 37963698 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005808 exon2 c.C226T p.L76F . . . OXSR1 9943 broad.mit.edu 36 3 38266483 38266483 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005109 exon15 c.G1345T p.D449Y . . . SLC22A14 9389 broad.mit.edu 36 3 38322686 38322686 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004803 exon1 c.C165T p.L55L . . . SCN5A 6331 broad.mit.edu 36 3 38570799 38570799 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099405 exon26 c.C4734T p.F1578F . . . SCN10A 6336 broad.mit.edu 36 3 38718476 38718476 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006514 exon26 c.G4515A p.T1505T . . . SCN10A 6336 broad.mit.edu 36 3 38745177 38745177 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006514 exon15 c.G2500A p.D834N . . . SCN11A 11280 broad.mit.edu 36 3 38864087 38864087 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014139 exon26 c.C4478T p.S1493L . . . TTC21A 199223 broad.mit.edu 36 3 39141830 39141830 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105513 exon10 c.C1072T p.L358L . . . CX3CR1 1524 broad.mit.edu 36 3 39282977 39282977 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171174 exon2 c.G124T p.E42X . . . RPSA 3921 broad.mit.edu 36 3 39428545 39428545 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002295 exon6 c.A782G p.Q261R . . . ENTPD3 956 broad.mit.edu 36 3 40439349 40439349 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001248 exon8 c.C836T p.S279F . . . ZNF621 285268 broad.mit.edu 36 3 40549459 40549459 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098414 exon5 c.T1194G p.F398L . . . CHL1 10752 broad.mit.edu 36 3 406034 406034 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006614 exon20 c.A2347C p.N783H . . . CHL1 10752 broad.mit.edu 36 3 408473 408473 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006614 exon23 c.T2907C p.Y969Y . . . ULK4 54986 broad.mit.edu 36 3 41948481 41948481 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017886 exon5 c.A400C p.T134P . . . TRAK1 22906 broad.mit.edu 36 3 42239465 42239465 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042646 exon16 c.T2094C p.C698C . . . VIPR1 7433 broad.mit.edu 36 3 42551582 42551582 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004624 exon11 c.C1122T p.L374L . . . C3orf23 285343 broad.mit.edu 36 3 44374749 44374749 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001029840 exon4 c.T202G p.F68V . . . ZNF445 353274 broad.mit.edu 36 3 44464123 44464123 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181489 exon8 c.C2044A p.L682M . . . ZNF167 55888 broad.mit.edu 36 3 44587123 44587123 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018651 exon6 c.G1517A p.R506Q . . . ZNF501 115560 broad.mit.edu 36 3 44751007 44751007 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145044 exon3 c.C90A p.F30L . . . LARS2 23395 broad.mit.edu 36 3 45411146 45411146 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015340 exon3 c.G197A p.R66Q . . . SLC6A20 54716 broad.mit.edu 36 3 45792327 45792327 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022405 exon4 c.C512T p.A171V . . . CCR1 1230 broad.mit.edu 36 3 46219763 46219763 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001295 exon2 c.A1046G p.H349R . . . ITPR1 3708 broad.mit.edu 36 3 4662079 4662079 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099952 exon9 c.C633T p.S211S . . . SETD2 29072 broad.mit.edu 36 3 47036271 47036271 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014159 exon19 c.G7414A p.E2472K . . . SETD2 29072 broad.mit.edu 36 3 47130441 47130441 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014159 exon5 c.G4644A p.Q1548Q . . . KIF9 64147 broad.mit.edu 36 3 47253072 47253072 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182902 exon18 c.G1966T p.E656X . . . KIF9 64147 broad.mit.edu 36 3 47257437 47257437 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182902 exon17 c.A1782G p.R594R . . . KIF9 64147 broad.mit.edu 36 3 47283720 47283720 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182902 exon6 c.A629G p.N210S . . . SCAP 22937 broad.mit.edu 36 3 47442026 47442026 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012235 exon8 c.T990G p.S330S . . . SMARCC1 6599 broad.mit.edu 36 3 47730920 47730920 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003074 exon8 c.A781C p.K261Q . . . FBXW12 285231 broad.mit.edu 36 3 48398204 48398204 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207102 exon9 c.C996T p.I332I . . . PFKFB4 5210 broad.mit.edu 36 3 48562598 48562598 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004567 exon2 c.G171T p.K57N . . . CELSR3 1951 broad.mit.edu 36 3 48672002 48672002 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001407 exon1 c.C3070T p.R1024W . . . DALRD3 55152 broad.mit.edu 36 3 49028084 49028084 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018114 exon12 c.C1072T p.R358C . . . QARS 5859 broad.mit.edu 36 3 49108503 49108503 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005051 exon24 c.G2291A p.R764Q . . . USP19 10869 broad.mit.edu 36 3 49129020 49129020 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199162 exon8 c.C1121T p.A374V . . . DAG1 1605 broad.mit.edu 36 3 49523197 49523197 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004393 exon2 c.C226T p.R76C . . . DOCK3 1795 broad.mit.edu 36 3 51345660 51345660 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004947 exon35 c.C3506T p.A1169V . . . DOCK3 1795 broad.mit.edu 36 3 51388257 51388257 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004947 exon51 c.C5410T p.R1804W . . . VPRBP 9730 broad.mit.edu 36 3 51426527 51426527 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171904 exon18 c.G3686A p.R1229Q . . . RAD54L2 23132 broad.mit.edu 36 3 51639967 51639967 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015106 exon6 c.C805T p.R269W . . . DNAH1 25981 broad.mit.edu 36 3 52358381 52358381 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015512 exon14 c.G2431A p.D811N . . . DNAH1 25981 broad.mit.edu 36 3 52382070 52382070 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015512 exon44 c.T6946C p.W2316R . . . PBRM1 55193 broad.mit.edu 36 3 52653767 52653767 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018313 exon9 c.C892T p.R298X . . . GNL3 26354 broad.mit.edu 36 3 52695869 52695869 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206825 exon2 c.A22C p.K8Q . . . GLT8D1 55830 broad.mit.edu 36 3 52704038 52704038 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010983 exon11 c.C979T p.L327F . . . TMEM110 375346 broad.mit.edu 36 3 52842425 52842425 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198974 exon10 c.C1074A p.V358V . . . PRKCD 5580 broad.mit.edu 36 3 53192242 53192242 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006254 exon8 c.G637A p.A213T . . . CACNA1D 776 broad.mit.edu 36 3 53760914 53760914 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128839 exon28 c.G3615A p.S1205S . . . WNT5A 7474 broad.mit.edu 36 3 55479375 55479375 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003392 exon5 c.G928A p.V310M . . . ERC2 26059 broad.mit.edu 36 3 55708480 55708480 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015576 exon15 c.C2807T p.S936L . . . C3orf63 23272 broad.mit.edu 36 3 56633550 56633550 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001112736 exon23 c.T4480C p.S1494P . . . C3orf63 23272 broad.mit.edu 36 3 56637679 56637679 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001112736 exon19 c.T3751C p.Y1251H . . . IL17RD 54756 broad.mit.edu 36 3 57115211 57115211 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017563 exon6 c.T562G p.L188V . . . PDHB 5162 broad.mit.edu 36 3 58388922 58388922 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000925 exon10 c.C959T p.A320V . . . FAM107A 11170 broad.mit.edu 36 3 58527396 58527396 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001076778 exon4 c.C394T p.R132W . . . C3orf67 200844 broad.mit.edu 36 3 58824508 58824508 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198463 exon12 c.C1034T p.S345F . . . PTPRG 5793 broad.mit.edu 36 3 62191975 62191975 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002841 exon14 c.A2325C p.R775S . . . CADPS 8618 broad.mit.edu 36 3 62442440 62442440 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003716 exon22 c.G3171A p.A1057A . . . ATXN7 6314 broad.mit.edu 36 3 63956727 63956727 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177387 exon11 c.C2189T p.S730F . . . PRICKLE2 166336 broad.mit.edu 36 3 64059995 64059995 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198859 exon8 c.C2307T p.F769F . . . ADAMTS9 56999 broad.mit.edu 36 3 64641942 64641942 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182920 exon3 c.A654G p.T218T . . . MAGI1 9223 broad.mit.edu 36 3 65321956 65321956 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015520 exon23 c.C3676T p.R1226C . . . KBTBD8 84541 broad.mit.edu 36 3 67141338 67141338 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032505 exon4 c.G1645A p.V549I . . . UBA3 9039 broad.mit.edu 36 3 69209682 69209682 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198195 exon2 c.G98A p.R33Q . . . MITF 4286 broad.mit.edu 36 3 70069783 70069783 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198158 exon2 c.C154T p.P52S . . . GRM7 2917 broad.mit.edu 36 3 7315431 7315431 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000844 exon3 c.A797C p.D266A . . . ROBO2 6092 broad.mit.edu 36 3 77230157 77230157 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002942 exon2 c.C364T p.R122X . . . ROBO2 6092 broad.mit.edu 36 3 77695029 77695029 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128929 exon10 c.A1482C p.X494Y . . . ROBO2 6092 broad.mit.edu 36 3 77706452 77706452 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002942 exon14 c.G2084A p.R695Q . . . ROBO2 6092 broad.mit.edu 36 3 77728575 77728575 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128929 exon18 c.A2779C p.K927Q . . . ROBO1 6091 broad.mit.edu 36 3 78759219 78759219 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_002941 exon26 c.C3817T p.P1273S . . . CAV3 859 broad.mit.edu 36 3 8762497 8762497 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001234 exon2 c.G400A p.A134T . . . HTR1F 3355 broad.mit.edu 36 3 88123012 88123012 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000866 exon2 c.C423T p.G141G . . . CGGBP1 8545 broad.mit.edu 36 3 88187657 88187657 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008390 exon4 c.C160T p.R54C . . . EPHA3 2042 broad.mit.edu 36 3 89341794 89341794 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005233 exon3 c.G248A p.R83K . . . RAD18 56852 broad.mit.edu 36 3 8952606 8952606 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020165 exon7 c.G838T p.E280X . . . TADA3 10474 broad.mit.edu 36 3 9808114 9808114 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133480 exon2 c.G37A p.D13N . . . EPHA6 285220 broad.mit.edu 36 3 98188890 98188890 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080448 exon3 c.A477G p.E159E . . . EPHA6 285220 broad.mit.edu 36 3 98676909 98676909 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080448 exon8 c.G1918T p.G640X . . . OR5H1 26341 broad.mit.edu 36 3 99334915 99334915 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005338 exon1 c.G684T p.K228N . . . OR5H15 403274 broad.mit.edu 36 3 99370407 99370407 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005515 exon1 c.A174C p.P58P . . . OR5H6 79295 broad.mit.edu 36 3 99466570 99466570 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005479 exon1 c.G752A p.R251Q . . . OR5K4 403278 broad.mit.edu 36 3 99556011 99556011 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005517 exon1 c.C624A p.I208I . . . OR5K3 403277 broad.mit.edu 36 3 99592843 99592843 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005516 exon1 c.C644T p.S215F . . . ADH6 130 broad.mit.edu 36 4 100348894 100348894 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000672 exon6 c.C782T p.A261V . . . ADH1C 126 broad.mit.edu 36 4 100487220 100487220 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000669 exon3 c.A225C p.E75D . . . MTTP 4547 broad.mit.edu 36 4 100762858 100762858 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000253 exon19 c.C2515T p.Q839X . . . PPP3CA 5530 broad.mit.edu 36 4 102336137 102336137 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130691 exon2 c.G218A p.R73Q . . . BANK1 55024 broad.mit.edu 36 4 103058250 103058250 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017935 exon7 c.C1087T p.L363F . . . BANK1 55024 broad.mit.edu 36 4 103211478 103211478 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017935 exon14 c.C2236T p.P746S . . . MANBA 4126 broad.mit.edu 36 4 103830894 103830894 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005908 exon6 c.C756T p.I252I . . . NHEDC2 133308 broad.mit.edu 36 4 104189606 104189606 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178833 exon6 c.C606T p.G202G . . . CENPE 1062 broad.mit.edu 36 4 104291897 104291897 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001813 exon26 c.C3324T p.A1108A . . . TACR3 6870 broad.mit.edu 36 4 104732217 104732217 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001059 exon4 c.C961A p.L321I . . . TET2 54790 broad.mit.edu 36 4 106376939 106376939 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017628 exon3 c.C2391T p.F797F . . . GSTCD 79807 broad.mit.edu 36 4 106963578 106963578 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024751 exon6 c.G998A p.R333Q . . . NPNT 255743 broad.mit.edu 36 4 107107864 107107864 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033047 exon11 c.C1416T p.L472L . . . PAPSS1 9061 broad.mit.edu 36 4 108794176 108794176 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005443 exon9 c.G1157A p.R386Q . . . LEF1 51176 broad.mit.edu 36 4 109220154 109220154 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166119 exon6 c.T500C p.I167T . . . AGXT2L1 64850 broad.mit.edu 36 4 109895251 109895251 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146627 exon4 c.G301T p.D101Y . . . HS3ST1 9957 broad.mit.edu 36 4 11009996 11009996 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005114 exon2 c.G732A p.S244S . . . COL25A1 84570 broad.mit.edu 36 4 110442606 110442606 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198721 exon2 c.G19A p.A7T . . . SEC24B 10427 broad.mit.edu 36 4 110652685 110652685 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006323 exon9 c.G1900A p.D634N . . . EGF 1950 broad.mit.edu 36 4 111135415 111135415 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001963 exon20 c.T2935C p.S979P . . . TIFA 92610 broad.mit.edu 36 4 113418498 113418498 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052864 exon2 c.C524A p.S175Y . . . C4orf21 55345 broad.mit.edu 36 4 113760066 113760066 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018392 exon6 c.C581T p.S194L . . . UGT8 7368 broad.mit.edu 36 4 115763789 115763789 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128174 exon2 c.G304A p.E102K . . . PRSS12 8492 broad.mit.edu 36 4 119453858 119453858 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003619 exon7 c.G1435A p.E479K . . . SEC24D 9871 broad.mit.edu 36 4 119898333 119898333 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014822 exon11 c.A1412C p.K471T . . . SYNPO2 171024 broad.mit.edu 36 4 120170467 120170467 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133477 exon4 c.C1089T p.S363S . . . SYNPO2 171024 broad.mit.edu 36 4 120171852 120171852 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133477 exon4 c.C2474T p.A825V . . . MYOZ2 51778 broad.mit.edu 36 4 120326759 120326759 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016599 exon6 c.G751A p.E251K . . . USP53 54532 broad.mit.edu 36 4 120433259 120433259 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019050 exon18 c.T2667C p.C889C . . . PDE5A 8654 broad.mit.edu 36 4 120666202 120666202 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033437 exon12 c.C1573T p.R525W . . . PDE5A 8654 broad.mit.edu 36 4 120747383 120747383 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033437 exon2 c.G514T p.E172X . . . MAD2L1 4085 broad.mit.edu 36 4 121200785 121200785 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002358 exon5 c.C554A p.S185X . . . C4orf31 79625 broad.mit.edu 36 4 122176988 122176988 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024574 exon4 c.G1588A p.E530K . . . QRFPR 84109 broad.mit.edu 36 4 122473505 122473505 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198179 exon4 c.G718T p.E240X . . . FAT4 79633 broad.mit.edu 36 4 126459973 126459973 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon1 c.T2957C p.V986A . . . FAT4 79633 broad.mit.edu 36 4 126461577 126461577 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon1 c.G4561A p.D1521N . . . FAT4 79633 broad.mit.edu 36 4 126590986 126590986 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon9 c.G9365A p.G3122D . . . FAT4 79633 broad.mit.edu 36 4 126592271 126592271 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon9 c.C10650T p.S3550S . . . FAT4 79633 broad.mit.edu 36 4 126593097 126593097 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024582 exon9 c.G11476A p.V3826I . . . INTU 27152 broad.mit.edu 36 4 128804062 128804062 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015693 exon4 c.A845G p.N282S . . . SLC25A31 83447 broad.mit.edu 36 4 128914099 128914099 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031291 exon6 c.C868T p.R290C . . . PLK4 10733 broad.mit.edu 36 4 129034150 129034150 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190801 exon12 c.A2232C p.I744I . . . PHF17 79960 broad.mit.edu 36 4 129983565 129983565 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199320 exon3 c.A60G p.S20S . . . BOD1L 259282 broad.mit.edu 36 4 13219330 13219330 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148894 exon8 c.G1664T p.R555I . . . PCDH10 57575 broad.mit.edu 36 4 134291285 134291285 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032961 exon1 c.C540T p.F180F . . . PCDH18 54510 broad.mit.edu 36 4 138671586 138671586 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019035 exon1 c.T1107G p.I369M . . . C4orf49 84709 broad.mit.edu 36 4 140407566 140407566 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032623 exon4 c.A360G p.V120V . . . TBC1D9 23158 broad.mit.edu 36 4 141800209 141800209 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015130 exon11 c.A1904G p.Y635C . . . RNF150 57484 broad.mit.edu 36 4 142108278 142108278 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020724 exon2 c.C684A p.V228V . . . RNF150 57484 broad.mit.edu 36 4 142108339 142108339 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020724 exon2 c.C623T p.S208L . . . RNF150 57484 broad.mit.edu 36 4 142272995 142272995 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020724 exon1 c.G418A p.A140T . . . INPP4B 8821 broad.mit.edu 36 4 143248747 143248747 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003866 exon24 c.G2323A p.E775K . . . INPP4B 8821 broad.mit.edu 36 4 143333730 143333730 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003866 exon16 c.C1141T p.L381F . . . GAB1 2549 broad.mit.edu 36 4 144578691 144578691 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207123 exon4 c.G683A p.S228N . . . SMARCA5 8467 broad.mit.edu 36 4 144684567 144684567 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003601 exon16 c.A2164C p.K722Q . . . MMAA 166785 broad.mit.edu 36 4 146795755 146795755 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_172250 exon7 c.C976T p.R326C . . . ARHGAP10 79658 broad.mit.edu 36 4 149015626 149015626 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024605 exon8 c.G707A p.R236Q . . . DCLK2 166614 broad.mit.edu 36 4 151380372 151380372 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040260 exon11 c.C1595A p.S532Y . . . PRSS48 345062 broad.mit.edu 36 4 152422788 152422788 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183375 exon3 c.C254T p.S85L . . . FBXW7 55294 broad.mit.edu 36 4 153466694 153466694 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018315 exon9 c.G1318T p.D440Y FBXW7,large_intestine,colon,Substitution - Missense,0 . . FBXW7 55294 broad.mit.edu 36 4 153551906 153551906 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033632 exon2 c.A500C p.K167T . . . FBXW7 55294 broad.mit.edu 36 4 153552365 153552365 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033632 exon2 c.G41A p.R14Q . . . TRIM2 23321 broad.mit.edu 36 4 154416504 154416504 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015271 exon3 c.G225T p.Q75H . . . TRIM2 23321 broad.mit.edu 36 4 154436311 154436311 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015271 exon6 c.G1183A p.E395K . . . KIAA0922 23240 broad.mit.edu 36 4 154724190 154724190 + Missense_Mutation SNP G A A rs35565709 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015196 exon11 c.G976A p.D326N . . . KIAA0922 23240 broad.mit.edu 36 4 154744409 154744409 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015196 exon25 c.A2792C p.N931T . . . DCHS2 54798 broad.mit.edu 36 4 155439108 155439108 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017639 exon18 c.T4443G p.L1481L . . . MAP9 79884 broad.mit.edu 36 4 156500959 156500959 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039580 exon7 c.G861A p.E287E . . . GUCY1B3 2983 broad.mit.edu 36 4 156918163 156918163 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000857 exon4 c.G216T p.K72N . . . ACCN5 51802 broad.mit.edu 36 4 156977341 156977341 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017419 exon8 c.A1185C p.K395N . . . GLRB 2743 broad.mit.edu 36 4 158311251 158311251 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166060 exon10 c.G1415A p.R472Q . . . GRIA2 2891 broad.mit.edu 36 4 158444283 158444283 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083620 exon3 c.G218C p.G73A . . . GRIA2 2891 broad.mit.edu 36 4 158501623 158501623 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083619 exon14 c.A2303G p.N768S . . . FAM198B 51313 broad.mit.edu 36 4 159268090 159268090 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128424 exon5 c.C1479T p.I493I . . . PPID 5481 broad.mit.edu 36 4 159859829 159859829 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005038 exon3 c.G286T p.E96X . . . RAPGEF2 9693 broad.mit.edu 36 4 160482390 160482390 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014247 exon14 c.G2276A p.R759K . . . TKTL2 84076 broad.mit.edu 36 4 164612987 164612987 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032136 exon1 c.C1350T p.F450F . . . TKTL2 84076 broad.mit.edu 36 4 164613463 164613463 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032136 exon1 c.T874C p.S292P . . . CPE 1363 broad.mit.edu 36 4 166520120 166520120 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001873 exon1 c.C297T p.V99V . . . TLL1 7092 broad.mit.edu 36 4 167148580 167148580 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012464 exon7 c.G847T p.E283X . . . TLL1 7092 broad.mit.edu 36 4 167182647 167182647 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012464 exon11 c.A1280C p.K427T . . . DDX60 55601 broad.mit.edu 36 4 169406000 169406000 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017631 exon29 c.A3877C p.T1293P . . . DDX60L 91351 broad.mit.edu 36 4 169553832 169553832 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012967 exon27 c.G3510T p.K1170N . . . NEK1 4750 broad.mit.edu 36 4 170591329 170591329 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199400 exon26 c.T2611G p.L871V . . . NEK1 4750 broad.mit.edu 36 4 170665985 170665985 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199400 exon18 c.C1606T p.R536C . . . CLRN2 645104 broad.mit.edu 36 4 17137680 17137680 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079827 exon3 c.C576T p.C192C . . . NCAPG 64151 broad.mit.edu 36 4 17435770 17435770 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022346 exon10 c.G1465T p.E489X . . . GALNT7 51809 broad.mit.edu 36 4 174453184 174453184 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017423 exon4 c.C817T p.R273X . . . GALNT7 51809 broad.mit.edu 36 4 174479351 174479351 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017423 exon12 c.C1882T p.R628C . . . HMGB2 3148 broad.mit.edu 36 4 174490828 174490828 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002129 exon3 c.A263C p.K88T . . . LCORL 254251 broad.mit.edu 36 4 17456454 17456454 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153686 exon7 c.C945T p.S315S . . . MORF4 10934 broad.mit.edu 36 4 174774088 174774088 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006792 exon1 c.C282T p.F94F . . . FBXO8 26269 broad.mit.edu 36 4 175420633 175420633 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012180 exon2 c.G186A p.S62S . . . GLRA3 8001 broad.mit.edu 36 4 175801641 175801641 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042543 exon9 c.C1221T p.I407I . . . ADAM29 11086 broad.mit.edu 36 4 176135267 176135267 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130705 exon3 c.G2016T p.K672N . . . WDR17 116966 broad.mit.edu 36 4 177326872 177326872 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181265 exon23 c.A3046C p.K1016Q . . . NEIL3 55247 broad.mit.edu 36 4 178511757 178511757 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018248 exon8 c.A1341C p.V447V . . . C4orf41 60684 broad.mit.edu 36 4 184844871 184844871 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199053 exon18 c.G1869T p.K623N . . . MLF1IP 79682 broad.mit.edu 36 4 185883108 185883108 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024629 exon4 c.G317T p.R106I . . . HELT 391723 broad.mit.edu 36 4 186178713 186178713 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001029887 exon4 c.G777A p.G259G . . . SNX25 83891 broad.mit.edu 36 4 186468795 186468795 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031953 exon7 c.C683T p.A228V . . . CCDC110 256309 broad.mit.edu 36 4 186616979 186616979 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152775 exon6 c.G1756T p.E586X . . . FAM149A 25854 broad.mit.edu 36 4 187314227 187314227 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006655 exon6 c.C463T p.R155C . . . KLKB1 3818 broad.mit.edu 36 4 187414150 187414150 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000892 exon13 c.A1500G p.K500K . . . F11 2160 broad.mit.edu 36 4 187438418 187438418 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000128 exon9 c.G913A p.E305K . . . SLIT2 9353 broad.mit.edu 36 4 20207146 20207146 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004787 exon32 c.T3331G p.C1111G . . . GPR125 166647 broad.mit.edu 36 4 21998479 21998479 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145290 exon19 c.G3913A p.D1305N . . . SLC34A2 10568 broad.mit.edu 36 4 25285100 25285100 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177999 exon11 c.C1298A p.S433Y . . . ADD1 118 broad.mit.edu 36 4 2856054 2856054 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001119 exon4 c.A373G p.T125A . . . HTT 3064 broad.mit.edu 36 4 3178403 3178403 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002111 exon44 c.G5970A p.T1990T . . . RGS12 6002 broad.mit.edu 36 4 3386292 3386292 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002926 exon6 c.G2206T p.E736X . . . LRPAP1 4043 broad.mit.edu 36 4 3486436 3486436 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002337 exon7 c.C852T p.F284F . . . ZNF141 7700 broad.mit.edu 36 4 357154 357154 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003441 exon4 c.C928T p.P310S . . . ARAP2 116984 broad.mit.edu 36 4 35845040 35845040 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015230 exon10 c.A1882C p.T628P . . . ARAP2 116984 broad.mit.edu 36 4 35890486 35890486 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015230 exon5 c.G1060A p.E354K . . . PGM2 55276 broad.mit.edu 36 4 37539529 37539529 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018290 exon14 c.T1740C p.D580D . . . TLR1 7096 broad.mit.edu 36 4 38476069 38476069 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003263 exon4 c.C779A p.S260Y . . . FAM114A1 92689 broad.mit.edu 36 4 38600876 38600876 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138389 exon9 c.G1036T p.E346X . . . KLHL5 51088 broad.mit.edu 36 4 38741028 38741028 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015990 exon1 c.G499T p.E167X . . . KLHL5 51088 broad.mit.edu 36 4 38760112 38760112 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015990 exon4 c.C976T p.R326C . . . RFC1 5981 broad.mit.edu 36 4 38967934 38967934 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002913 exon24 c.G3289T p.E1097X . . . RFC1 5981 broad.mit.edu 36 4 38987010 38987010 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002913 exon13 c.A1526C p.K509T . . . LIAS 11019 broad.mit.edu 36 4 39145604 39145604 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194451 exon7 c.C680T p.A227V . . . PDS5A 23244 broad.mit.edu 36 4 39540247 39540247 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100399 exon26 c.C3073T p.R1025C . . . N4BP2 55728 broad.mit.edu 36 4 39800165 39800165 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018177 exon9 c.A4039C p.S1347R . . . CHRNA9 55584 broad.mit.edu 36 4 40032724 40032724 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017581 exon2 c.C188T p.T63M . . . PHOX2B 8929 broad.mit.edu 36 4 41444253 41444253 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003924 exon2 c.G299A p.R100H . . . TMEM33 55161 broad.mit.edu 36 4 41641679 41641679 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018126 exon5 c.C509T p.A170V . . . ZNF721 170960 broad.mit.edu 36 4 425911 425911 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133474 exon3 c.A2345G p.K782R . . . D4S234E 27065 broad.mit.edu 36 4 4462303 4462303 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040101 exon4 c.G349A p.V117I . . . GABRA2 2555 broad.mit.edu 36 4 46006958 46006958 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000807 exon6 c.A548C p.K183T . . . GABRA4 2557 broad.mit.edu 36 4 46671127 46671127 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000809 exon6 c.G600T p.M200I . . . GABRB1 2560 broad.mit.edu 36 4 46858206 46858206 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000812 exon4 c.C424T p.R142X . . . CORIN 10699 broad.mit.edu 36 4 47361845 47361845 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006587 exon11 c.A1550C p.K517T . . . TXK 7294 broad.mit.edu 36 4 47809273 47809273 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003328 exon4 c.G188A p.R63H . . . PDGFRA 5156 broad.mit.edu 36 4 54839393 54839393 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006206 exon15 c.G2110T p.E704X . . . PDGFRA 5156 broad.mit.edu 36 4 54856136 54856136 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006206 exon23 c.C3210T p.I1070I . . . KIT 3815 broad.mit.edu 36 4 55286926 55286926 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000222 exon9 c.G1493A p.G498D . . . KDR 3791 broad.mit.edu 36 4 55668674 55668674 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002253 exon10 c.G1399A p.A467T . . . SRD5A3 79644 broad.mit.edu 36 4 55925068 55925068 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024592 exon3 c.C435T p.F145F . . . NMU 10874 broad.mit.edu 36 4 56177293 56177293 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_006681 exon3 c.C188T p.S63L . . . CEP135 9662 broad.mit.edu 36 4 56535719 56535719 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025009 exon11 c.A1300C p.K434Q . . . REST 5978 broad.mit.edu 36 4 57492056 57492056 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193508 exon4 c.G2275T p.E759X . . . CRMP1 1400 broad.mit.edu 36 4 5800910 5800910 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153717 exon8 c.C1074T p.C358C . . . JAKMIP1 152789 broad.mit.edu 36 4 6082408 6082408 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099433 exon20 c.G2381T p.R794I . . . JAKMIP1 152789 broad.mit.edu 36 4 6113065 6113065 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144720 exon11 c.T1631C p.V544A . . . LPHN3 23284 broad.mit.edu 36 4 62441165 62441165 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015236 exon7 c.C1473T p.I491I . . . LPHN3 23284 broad.mit.edu 36 4 62457928 62457928 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015236 exon9 c.G1739T p.R580I . . . TECRL 253017 broad.mit.edu 36 4 64829385 64829385 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010874 exon11 c.T933G p.I311M . . . CENPC1 1060 broad.mit.edu 36 4 68067748 68067748 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001812 exon6 c.G399A p.S133S . . . UBA6 55236 broad.mit.edu 36 4 68178810 68178810 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018227 exon26 c.C2297T p.A766V . . . UBA6 55236 broad.mit.edu 36 4 68226790 68226790 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018227 exon5 c.C315T p.F105F . . . YTHDC1 91746 broad.mit.edu 36 4 68881112 68881112 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031732 exon6 c.G1022A p.R341Q . . . YTHDC1 91746 broad.mit.edu 36 4 68885423 68885423 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031732 exon4 c.G800A p.R267Q . . . UGT2B7 7364 broad.mit.edu 36 4 69996958 69996958 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001074 exon1 c.A131G p.D44G . . . UGT2B7 7364 broad.mit.edu 36 4 70008613 70008613 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001074 exon5 c.G1294T p.V432L . . . UGT2B28 54490 broad.mit.edu 36 4 70190021 70190021 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053039 exon4 c.C1052A p.T351N . . . C4orf7 260436 broad.mit.edu 36 4 71134386 71134386 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152997 exon4 c.C151T p.R51C . . . AMBN 258 broad.mit.edu 36 4 71499876 71499876 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016519 exon5 c.C218A p.S73Y . . . SLC4A4 8671 broad.mit.edu 36 4 72582116 72582116 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134742 exon16 c.C2009T p.S670L . . . GC 2638 broad.mit.edu 36 4 72842651 72842651 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000583 exon7 c.C803T p.S268F . . . COX18 285521 broad.mit.edu 36 4 74149944 74149944 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173827 exon3 c.G485A p.R162Q . . . ALB 213 broad.mit.edu 36 4 74489744 74489744 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000477 exon2 c.T127G p.F43V . . . RASSF6 166824 broad.mit.edu 36 4 74683248 74683248 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177532 exon3 c.G117A p.Q39Q . . . PSAPL1 768239 broad.mit.edu 36 4 7486749 7486749 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085382 exon1 c.C758A p.S253Y . . . CXCL6 6372 broad.mit.edu 36 4 74921828 74921828 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002993 exon3 c.C287T p.A96V . . . CDKL2 8999 broad.mit.edu 36 4 76751487 76751487 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003948 exon4 c.G446A p.R149Q CDKL2,ovary,NS,Substitution - Missense,0 . . PPEF2 5470 broad.mit.edu 36 4 77006465 77006465 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006239 exon15 c.G1821A p.W607X . . . CXCL9 4283 broad.mit.edu 36 4 77143812 77143812 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002416 exon4 c.G341A p.R114Q . . . CCDC158 339965 broad.mit.edu 36 4 77493416 77493416 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042784 exon15 c.G2329T p.E777X . . . CCDC158 339965 broad.mit.edu 36 4 77507507 77507507 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042784 exon11 c.A1794C p.E598D . . . SORCS2 57537 broad.mit.edu 36 4 7770722 7770722 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020777 exon18 c.C2336T p.P779L . . . MRPL1 65008 broad.mit.edu 36 4 79023630 79023630 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020236 exon3 c.G354A p.K118K . . . BMP2K 55589 broad.mit.edu 36 4 80012891 80012891 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198892 exon13 c.G1708T p.E570X . . . GK2 2712 broad.mit.edu 36 4 80547875 80547875 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033214 exon1 c.T504C p.V168V . . . PRDM8 56978 broad.mit.edu 36 4 81340342 81340342 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099403 exon2 c.C84T p.S28S . . . BMP3 651 broad.mit.edu 36 4 82186353 82186353 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001201 exon2 c.C754T p.P252S . . . FAM175A 84142 broad.mit.edu 36 4 84610550 84610550 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139076 exon5 c.C306T p.F102F . . . ACOX3 8310 broad.mit.edu 36 4 8467496 8467496 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003501 exon4 c.G438T p.K146N . . . AGPAT9 84803 broad.mit.edu 36 4 84728442 84728442 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032717 exon5 c.C610T p.R204X . . . WDFY3 23001 broad.mit.edu 36 4 85831911 85831911 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014991 exon60 c.C9101T p.A3034V . . . WDFY3 23001 broad.mit.edu 36 4 85845657 85845657 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014991 exon54 c.G8249T p.R2750I . . . WDFY3 23001 broad.mit.edu 36 4 85883936 85883936 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014991 exon37 c.T6014G p.F2005C . . . GPR78 27201 broad.mit.edu 36 4 8639777 8639777 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080819 exon3 c.G879A p.T293T . . . CPZ 8532 broad.mit.edu 36 4 8658757 8658757 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003652 exon4 c.G818A p.R273H . . . DSPP 1834 broad.mit.edu 36 4 88755615 88755615 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014208 exon5 c.G2777T p.S926I . . . DSPP 1834 broad.mit.edu 36 4 88756355 88756355 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014208 exon5 c.G3517A p.D1173N . . . ABCG2 9429 broad.mit.edu 36 4 89232521 89232521 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004827 exon16 c.C1857T p.I619I . . . HERC6 55008 broad.mit.edu 36 4 89575914 89575914 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017912 exon18 c.G2264A p.R755K . . . HERC6 55008 broad.mit.edu 36 4 89582531 89582531 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017912 exon23 c.C2964A p.F988L . . . FAM13A 10144 broad.mit.edu 36 4 89879287 89879287 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014883 exon20 c.G2479A p.E827K . . . FAM13A 10144 broad.mit.edu 36 4 89921509 89921509 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014883 exon11 c.G1288T p.E430X . . . MMRN1 22915 broad.mit.edu 36 4 91035488 91035488 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007351 exon1 c.C343A p.L115I . . . DRD5 1816 broad.mit.edu 36 4 9393002 9393002 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000798 exon1 c.C251T p.A84V . . . GRID2 2895 broad.mit.edu 36 4 94912379 94912379 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001510 exon16 c.C2731T p.P911S . . . SMARCAD1 56916 broad.mit.edu 36 4 95348629 95348629 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128429 exon2 c.C61G p.P21A . . . SLC2A9 56606 broad.mit.edu 36 4 9591419 9591419 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001290 exon6 c.C489T p.I163I . . . BMPR1B 658 broad.mit.edu 36 4 96254982 96254982 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001203 exon5 c.G232A p.D78N . . . BMPR1B 658 broad.mit.edu 36 4 96271604 96271604 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001203 exon10 c.G994A p.D332N . . . C4orf37 285555 broad.mit.edu 36 4 99121342 99121342 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174952 exon6 c.G763A p.E255K . . . RAP1GDS1 5910 broad.mit.edu 36 4 99560249 99560249 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100428 exon10 c.C1087A p.L363I . . . ST8SIA4 7903 broad.mit.edu 36 5 100175653 100175653 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005668 exon5 c.G877T p.D293Y . . . SLCO4C1 353189 broad.mit.edu 36 5 101620750 101620750 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_180991 exon8 c.G1437A p.E479E . . . SLCO6A1 133482 broad.mit.edu 36 5 101823316 101823316 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173488 exon5 c.G964A p.A322T . . . PAM 5066 broad.mit.edu 36 5 102388875 102388875 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177306 exon23 c.C2627T p.P876L . . . NUDT12 83594 broad.mit.edu 36 5 102914564 102914564 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031438 exon7 c.A1286G p.D429G . . . ROPN1L 83853 broad.mit.edu 36 5 10514439 10514439 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031916 exon4 c.G561A p.T187T . . . FBXL17 64839 broad.mit.edu 36 5 107225454 107225454 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163315 exon9 c.G1972A p.E658K . . . FER 2241 broad.mit.edu 36 5 108199362 108199362 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005246 exon5 c.G436T p.E146X . . . WDR36 134430 broad.mit.edu 36 5 110467505 110467505 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139281 exon7 c.C887A p.S296X . . . APC 324 broad.mit.edu 36 5 112201182 112201182 + Silent SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127511 exon14 c.T1938G p.T646T . . . APC 324 broad.mit.edu 36 5 112202530 112202530 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127511 exon14 c.C3286T p.R1096X APC,large_intestine,colon,Substitution - Nonsense,0 . . APC 324 broad.mit.edu 36 5 112207541 112207541 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127511 exon14 c.T8297G p.F2766C . . . REEP5 7905 broad.mit.edu 36 5 112284783 112284783 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005669 exon2 c.G188A p.G63E . . . TSSK1B 83942 broad.mit.edu 36 5 112797670 112797670 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032028 exon1 c.G766A p.D256N . . . YTHDC2 64848 broad.mit.edu 36 5 112930849 112930849 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022828 exon22 c.C3004T p.R1002X . . . KCNN2 3781 broad.mit.edu 36 5 113768266 113768266 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021614 exon3 c.T815C p.V272A . . . CTNND2 1501 broad.mit.edu 36 5 11399675 11399675 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001332 exon9 c.G1437T p.Q479H . . . TRIM36 55521 broad.mit.edu 36 5 114494368 114494368 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018700 exon9 c.G1652A p.R551H . . . CCDC112 153733 broad.mit.edu 36 5 114632572 114632572 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040440 exon9 c.C1453T p.P485S . . . AQPEP 206338 broad.mit.edu 36 5 115346930 115346930 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173800 exon2 c.T743C p.F248S . . . AQPEP 206338 broad.mit.edu 36 5 115348252 115348252 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173800 exon3 c.G925A p.A309T . . . AQPEP 206338 broad.mit.edu 36 5 115366889 115366889 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173800 exon12 c.G1950A p.L650L . . . CTNND2 1501 broad.mit.edu 36 5 11785266 11785266 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001332 exon2 c.C156T p.L52L . . . DTWD2 285605 broad.mit.edu 36 5 118204595 118204595 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173666 exon6 c.A813C p.K271N . . . DMXL1 1657 broad.mit.edu 36 5 118513080 118513080 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005509 exon18 c.C3659T p.S1220L . . . DMXL1 1657 broad.mit.edu 36 5 118559969 118559969 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005509 exon31 c.T7462G p.S2488A . . . FAM170A 340069 broad.mit.edu 36 5 118996437 118996437 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182761 exon2 c.G166A p.E56K . . . PPIC 5480 broad.mit.edu 36 5 122387532 122387532 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000943 exon5 c.G576A p.S192S . . . CEP120 153241 broad.mit.edu 36 5 122753683 122753683 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166226 exon8 c.G1011T p.K337N . . . ZNF608 57507 broad.mit.edu 36 5 124007252 124007252 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020747 exon6 c.C4147A p.H1383N . . . ZNF608 57507 broad.mit.edu 36 5 124012054 124012054 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020747 exon4 c.G1922T p.R641I . . . MEGF10 84466 broad.mit.edu 36 5 126733522 126733522 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032446 exon6 c.T341C p.V114A . . . SLC12A2 6558 broad.mit.edu 36 5 127476496 127476496 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001046 exon2 c.T848C p.V283A . . . SLC12A2 6558 broad.mit.edu 36 5 127544505 127544505 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001046 exon23 c.G3132A p.T1044T . . . SLC12A2 6558 broad.mit.edu 36 5 127548444 127548444 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001046 exon26 c.T3500C p.V1167A . . . FBN2 2201 broad.mit.edu 36 5 127642266 127642266 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001999 exon57 c.G7305T p.K2435N . . . FBN2 2201 broad.mit.edu 36 5 127652777 127652777 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001999 exon52 c.C6578A p.S2193Y . . . SLC27A6 28965 broad.mit.edu 36 5 128329991 128329991 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017372 exon1 c.A262C p.R88R . . . SLC27A6 28965 broad.mit.edu 36 5 128387267 128387267 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017372 exon6 c.G1220T p.R407I . . . SLC27A6 28965 broad.mit.edu 36 5 128390771 128390771 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017372 exon7 c.C1302A p.F434L . . . ADAMTS19 171019 broad.mit.edu 36 5 129098577 129098577 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133638 exon22 c.T3348C p.H1116H . . . FNIP1 96459 broad.mit.edu 36 5 131042670 131042670 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133372 exon12 c.C1300T p.R434C . . . IL3 3562 broad.mit.edu 36 5 131426377 131426377 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000588 exon5 c.C453A p.I151I . . . IL4 3565 broad.mit.edu 36 5 132046171 132046171 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172348 exon3 c.C407T p.S136L . . . AFF4 27125 broad.mit.edu 36 5 132259940 132259940 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014423 exon11 c.T2281G p.S761A . . . HSPA4 3308 broad.mit.edu 36 5 132452090 132452090 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002154 exon9 c.G1081T p.E361X . . . HSPA4 3308 broad.mit.edu 36 5 132460841 132460841 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002154 exon15 c.G1893A p.K631K . . . CDKL3 51265 broad.mit.edu 36 5 133672243 133672243 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001113575 exon8 c.C956T p.S319F . . . DDX46 9879 broad.mit.edu 36 5 134159597 134159597 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014829 exon15 c.G1812T p.K604N . . . FBXL21 26223 broad.mit.edu 36 5 135304642 135304642 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012159 exon8 c.C688G p.Q230E . . . SPOCK1 6695 broad.mit.edu 36 5 136343005 136343005 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004598 exon10 c.C1044T p.C348C . . . PKD2L2 27039 broad.mit.edu 36 5 137256178 137256178 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014386 exon3 c.C244T p.R82C . . . PKD2L2 27039 broad.mit.edu 36 5 137258161 137258161 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014386 exon4 c.A488C p.E163A . . . KDM3B 51780 broad.mit.edu 36 5 137745120 137745120 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016604 exon6 c.C722T p.S241L . . . REEP2 51308 broad.mit.edu 36 5 137808120 137808120 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016606 exon4 c.G300T p.E100D . . . DNAH5 1767 broad.mit.edu 36 5 13788399 13788399 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon68 c.A11602G p.I3868V . . . DNAH5 1767 broad.mit.edu 36 5 13807320 13807320 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon62 c.G10547T p.R3516I . . . DNAH5 1767 broad.mit.edu 36 5 13822655 13822655 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon57 c.A9675C p.E3225D . . . SIL1 64374 broad.mit.edu 36 5 138414547 138414547 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037633 exon5 c.G332A p.R111Q . . . DNAH5 1767 broad.mit.edu 36 5 13921056 13921056 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon25 c.G3880A p.E1294K . . . DNAH5 1767 broad.mit.edu 36 5 13973594 13973594 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon6 c.G793A p.E265K . . . DNAH5 1767 broad.mit.edu 36 5 13981247 13981247 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon3 c.G233A p.R78Q . . . ANKHD1-EIF4EBP3 404734 broad.mit.edu 36 5 139888080 139888080 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017747 exon29 c.C5365A p.H1789N . . . APBB3 10307 broad.mit.edu 36 5 139921957 139921957 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133174 exon6 c.A538C p.S180R . . . WDR55 54853 broad.mit.edu 36 5 140028542 140028542 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017706 exon4 c.A542C p.K181T . . . HARS2 23438 broad.mit.edu 36 5 140056811 140056811 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012208 exon9 c.A926G p.Y309C . . . ZMAT2 153527 broad.mit.edu 36 5 140065396 140065396 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144723 exon6 c.A471C p.K157N . . . PCDHA1 56147 broad.mit.edu 36 5 140146651 140146651 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031410 exon1 c.A592C p.K198Q . . . PCDHA2 56146 broad.mit.edu 36 5 140155034 140155034 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018905 exon1 c.G301A p.E101K . . . PCDHA4 56144 broad.mit.edu 36 5 140169024 140169024 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031500 exon1 c.G2068A p.D690N . . . PCDHA5 56143 broad.mit.edu 36 5 140182202 140182202 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018908 exon1 c.G658A p.E220K . . . PCDHA9 9752 broad.mit.edu 36 5 140210011 140210011 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014005 exon1 c.C1747T p.R583W . . . PCDHA10 56139 broad.mit.edu 36 5 140216373 140216373 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031860 exon1 c.G556T p.D186Y . . . PCDHAC1 56135 broad.mit.edu 36 5 140287863 140287863 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031882 exon1 c.G1202A p.G401E . . . PCDHB1 29930 broad.mit.edu 36 5 140412642 140412642 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013340 exon1 c.C1403T p.A468V . . . PCDHB3 56132 broad.mit.edu 36 5 140461611 140461611 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018937 exon1 c.G1194T p.E398D . . . PCDHB4 56131 broad.mit.edu 36 5 140482680 140482680 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018938 exon1 c.T916A p.L306M . . . PCDHB4 56131 broad.mit.edu 36 5 140483885 140483885 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018938 exon1 c.C2121T p.F707F . . . PCDHB5 26167 broad.mit.edu 36 5 140495351 140495351 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015669 exon1 c.G151T p.D51Y . . . PCDHB6 56130 broad.mit.edu 36 5 140511393 140511393 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018939 exon1 c.C1371T p.F457F . . . PCDHB8 56128 broad.mit.edu 36 5 140538949 140538949 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019120 exon1 c.T1150C p.C384R . . . PCDHB8 56128 broad.mit.edu 36 5 140539383 140539383 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019120 exon1 c.C1584T p.F528F . . . PCDHB9 56127 broad.mit.edu 36 5 140548657 140548657 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019119 exon1 c.G1581A p.S527S . . . PCDHB10 56126 broad.mit.edu 36 5 140553821 140553821 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018930 exon1 c.C1512A p.V504V . . . PCDHB10 56126 broad.mit.edu 36 5 140553943 140553943 + Missense_Mutation SNP C T T rs17844584 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018930 exon1 c.C1634T p.A545V . . . PCDHGA1 56114 broad.mit.edu 36 5 140691362 140691362 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031993 exon1 c.C927T p.F309F . . . PCDHGA2 56113 broad.mit.edu 36 5 140699192 140699192 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032009 exon1 c.C470T p.A157V . . . PCDHGB1 56104 broad.mit.edu 36 5 140710622 140710622 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018922 exon1 c.C611A p.S204Y . . . PCDHGB1 56104 broad.mit.edu 36 5 140711584 140711584 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018922 exon1 c.G1573A p.E525K . . . PCDHGB2 56103 broad.mit.edu 36 5 140720451 140720451 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018923 exon1 c.C565T p.R189C . . . PCDHGA5 56110 broad.mit.edu 36 5 140725117 140725117 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032054 exon1 c.G1036A p.E346K . . . PCDHGA7 56108 broad.mit.edu 36 5 140743714 140743714 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032087 exon1 c.C1064A p.S355X . . . PCDHGA10 56106 broad.mit.edu 36 5 140775351 140775351 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_032090 exon1 c.C2425T p.P809S . . . PCDHGC4 56098 broad.mit.edu 36 5 140845375 140845375 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032406 exon1 c.C451T p.R151C . . . KIAA0141 9812 broad.mit.edu 36 5 141294000 141294000 + Nonsense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142603 exon9 c.T909G p.Y303X . . . PCDH12 51294 broad.mit.edu 36 5 141316758 141316758 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016580 exon1 c.C843T p.F281F . . . YIPF5 81555 broad.mit.edu 36 5 143525338 143525338 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030799 exon3 c.C134T p.S45L . . . RBM27 54439 broad.mit.edu 36 5 145583269 145583269 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018989 exon3 c.G289T p.E97X . . . STK32A 202374 broad.mit.edu 36 5 146734877 146734877 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001112724 exon11 c.A935C p.E312A . . . JAKMIP2 9832 broad.mit.edu 36 5 146996770 146996770 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014790 exon11 c.A1565C p.Y522S . . . JAKMIP2 9832 broad.mit.edu 36 5 146999412 146999412 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014790 exon10 c.C1506A p.I502I . . . JAKMIP2 9832 broad.mit.edu 36 5 147031533 147031533 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014790 exon2 c.G30T p.E10D . . . SPINK5 11005 broad.mit.edu 36 5 147485337 147485337 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127698 exon29 c.C2797T p.R933C . . . ANKH 56172 broad.mit.edu 36 5 14769866 14769866 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054027 exon9 c.G1090A p.A364T . . . ANKH 56172 broad.mit.edu 36 5 14804255 14804255 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054027 exon5 c.C610T p.R204C . . . ABLIM3 22885 broad.mit.edu 36 5 148609571 148609571 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014945 exon19 c.C1700T p.S567F . . . FAT2 2196 broad.mit.edu 36 5 150891665 150891665 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001447 exon13 c.G9487A p.D3163N . . . FAT2 2196 broad.mit.edu 36 5 150902648 150902648 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001447 exon9 c.G8233T p.D2745Y . . . FAT2 2196 broad.mit.edu 36 5 150902957 150902957 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001447 exon9 c.G7924A p.V2642M . . . FAT2 2196 broad.mit.edu 36 5 150927106 150927106 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001447 exon1 c.G1580T p.R527I . . . SPARC 6678 broad.mit.edu 36 5 151032960 151032960 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003118 exon4 c.G131A p.G44E . . . NMUR2 56923 broad.mit.edu 36 5 151752108 151752108 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020167 exon4 c.G1085A p.R362Q . . . GRIA1 2890 broad.mit.edu 36 5 153010244 153010244 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114183 exon4 c.C622T p.R208C . . . GRIA1 2890 broad.mit.edu 36 5 153058666 153058666 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114183 exon10 c.G1292A p.G431D . . . GRIA1 2890 broad.mit.edu 36 5 153129990 153129990 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114183 exon13 c.C2092T p.R698W . . . GRIA1 2890 broad.mit.edu 36 5 153130083 153130083 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114183 exon13 c.C2185T p.R729W . . . GALNT10 55568 broad.mit.edu 36 5 153746174 153746174 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198321 exon7 c.C1047T p.I349I . . . CNOT8 9337 broad.mit.edu 36 5 154224972 154224972 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004779 exon3 c.C145T p.R49X . . . KIF4B 285643 broad.mit.edu 36 5 154375454 154375454 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099293 exon1 c.G1842T p.K614N . . . ITK 3702 broad.mit.edu 36 5 156582541 156582541 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005546 exon6 c.G586A p.E196K . . . CYFIP2 26999 broad.mit.edu 36 5 156685186 156685186 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037333 exon17 c.G1944A p.T648T . . . ADAM19 8728 broad.mit.edu 36 5 156865318 156865318 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033274 exon11 c.A1067C p.D356A . . . UBLCP1 134510 broad.mit.edu 36 5 158630191 158630191 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145049 exon5 c.A410C p.K137T . . . GABRG2 2566 broad.mit.edu 36 5 161463608 161463608 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198904 exon6 c.C767T p.S256F . . . MAT2B 27430 broad.mit.edu 36 5 162877877 162877877 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013283 exon7 c.G935A p.R312Q . . . FAM134B 54463 broad.mit.edu 36 5 16536478 16536478 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001034850 exon4 c.T562G p.F188V . . . MYO10 4651 broad.mit.edu 36 5 16734987 16734987 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012334 exon31 c.C4182T p.I1394I . . . ODZ2 57451 broad.mit.edu 36 5 167421803 167421803 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122679 exon7 c.C1470A p.L490L . . . SLIT3 6586 broad.mit.edu 36 5 168055924 168055924 + Silent SNP G A A rs61746224 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003062 exon28 c.C3033T p.C1011C . . . MYO10 4651 broad.mit.edu 36 5 16811256 16811256 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012334 exon18 c.C1819T p.R607W . . . SLIT3 6586 broad.mit.edu 36 5 168155131 168155131 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003062 exon10 c.C966T p.I322I . . . DOCK2 1794 broad.mit.edu 36 5 169048866 169048866 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004946 exon9 c.G794A p.G265D . . . DOCK2 1794 broad.mit.edu 36 5 169057961 169057961 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004946 exon11 c.G985A p.D329N . . . LCP2 3937 broad.mit.edu 36 5 169612710 169612710 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005565 exon18 c.G1236A p.A412A . . . KCNMB1 3779 broad.mit.edu 36 5 169744981 169744981 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004137 exon2 c.C49A p.L17I . . . GABRP 2568 broad.mit.edu 36 5 170157070 170157070 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014211 exon6 c.A481G p.N161D . . . BNIP1 662 broad.mit.edu 36 5 172523466 172523466 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013980 exon6 c.C650T p.A217V . . . NSD1 64324 broad.mit.edu 36 5 176570723 176570723 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022455 exon5 c.A2717C p.K906T . . . NSD1 64324 broad.mit.edu 36 5 176642135 176642135 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022455 exon19 c.C5956T p.R1986C . . . GRK6 2870 broad.mit.edu 36 5 176794510 176794510 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004105 exon10 c.G931A p.D311N . . . GRM6 2916 broad.mit.edu 36 5 178346534 178346534 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000843 exon7 c.G1411A p.D471N . . . ADAMTS2 9509 broad.mit.edu 36 5 178632632 178632632 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021599 exon3 c.G574A p.E192K . . . MAPK9 5601 broad.mit.edu 36 5 179602298 179602298 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139070 exon8 c.A752C p.K251T . . . MAPK9 5601 broad.mit.edu 36 5 179640162 179640162 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_139070 exon2 c.C6T p.S2S . . . GFPT2 9945 broad.mit.edu 36 5 179698153 179698153 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005110 exon2 c.G61A p.E21K . . . CDH18 1016 broad.mit.edu 36 5 19757225 19757225 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004934 exon5 c.G631A p.D211N . . . CDH12 1010 broad.mit.edu 36 5 22114503 22114503 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004061 exon5 c.C40A p.L14M . . . PRDM9 56979 broad.mit.edu 36 5 23545410 23545410 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020227 exon3 c.A144C p.K48N . . . PRDM9 56979 broad.mit.edu 36 5 23557034 23557034 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020227 exon6 c.G497T p.R166I . . . CDH9 1007 broad.mit.edu 36 5 26921674 26921674 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016279 exon11 c.C1688T p.T563I . . . CDH9 1007 broad.mit.edu 36 5 26938458 26938458 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016279 exon7 c.G1137T p.E379D . . . CDH6 1004 broad.mit.edu 36 5 31353599 31353599 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004932 exon11 c.C1693A p.L565I . . . MTMR12 54545 broad.mit.edu 36 5 32275022 32275022 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001040446 exon13 c.G1186A p.D396N . . . ADAMTS12 81792 broad.mit.edu 36 5 33651795 33651795 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030955 exon15 c.G2283A p.W761X . . . RAI14 26064 broad.mit.edu 36 5 34854682 34854682 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145522 exon12 c.A876C p.E292D . . . AGXT2 64902 broad.mit.edu 36 5 35034594 35034594 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031900 exon14 c.G1532T p.R511I . . . SPEF2 79925 broad.mit.edu 36 5 35842677 35842677 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024867 exon35 c.G5122T p.E1708X . . . UGT3A1 133688 broad.mit.edu 36 5 35993069 35993069 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152404 exon5 c.G1053A p.W351X . . . RANBP3L 202151 broad.mit.edu 36 5 36293353 36293353 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145000 exon9 c.C732A p.F244L . . . RANBP3L 202151 broad.mit.edu 36 5 36296697 36296697 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145000 exon8 c.C611A p.S204Y . . . NIPBL 25836 broad.mit.edu 36 5 37060549 37060549 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015384 exon30 c.C5680T p.R1894C . . . C5orf42 65250 broad.mit.edu 36 5 37200145 37200145 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023073 exon37 c.C7575T p.F2525F . . . C5orf42 65250 broad.mit.edu 36 5 37211773 37211773 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023073 exon31 c.T5973G p.I1991M . . . C5orf42 65250 broad.mit.edu 36 5 37220855 37220855 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023073 exon25 c.A4273C p.N1425H . . . C5orf42 65250 broad.mit.edu 36 5 37237577 37237577 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023073 exon19 c.C3380T p.S1127L . . . LIFR 3977 broad.mit.edu 36 5 38566454 38566454 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127671 exon2 c.A53C p.K18T . . . RICTOR 253260 broad.mit.edu 36 5 38998386 38998386 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152756 exon18 c.G1626T p.E542D . . . FYB 2533 broad.mit.edu 36 5 39189434 39189434 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199335 exon3 c.A1165C p.T389P . . . C9 735 broad.mit.edu 36 5 39351804 39351804 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001737 exon6 c.A700C p.N234H . . . CARD6 84674 broad.mit.edu 36 5 40889247 40889247 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032587 exon3 c.A2056C p.R686R . . . HEATR7B2 133558 broad.mit.edu 36 5 41035617 41035617 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173489 exon40 c.C4504A p.L1502M . . . HEATR7B2 133558 broad.mit.edu 36 5 41053754 41053754 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173489 exon28 c.C2839T p.R947C . . . C6 729 broad.mit.edu 36 5 41185260 41185260 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000065 exon17 c.G2463T p.E821D . . . FBXO4 26272 broad.mit.edu 36 5 41962896 41962896 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012176 exon2 c.T214C p.S72P . . . GHR 2690 broad.mit.edu 36 5 42755154 42755154 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000163 exon10 c.C1788T p.T596T . . . MGC42105 167359 broad.mit.edu 36 5 43316392 43316392 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153361 exon4 c.G1115A p.R372Q MGC42105,large_intestine,NS,Substitution - Nonsense,+1 . . HCN1 348980 broad.mit.edu 36 5 45298579 45298579 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021072 exon8 c.T1874G p.I625S . . . HCN1 348980 broad.mit.edu 36 5 45302953 45302953 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021072 exon7 c.G1778A p.R593Q . . . HCN1 348980 broad.mit.edu 36 5 45339653 45339653 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021072 exon6 c.T1423G p.L475V . . . ITGA1 3672 broad.mit.edu 36 5 52254418 52254418 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181501 exon18 c.G2347A p.D783N . . . ADAMTS16 170690 broad.mit.edu 36 5 5292964 5292964 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139056 exon16 c.G2449A p.D817N . . . GZMK 3003 broad.mit.edu 36 5 54363067 54363067 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002104 exon4 c.C482A p.S161X . . . CDC20B 166979 broad.mit.edu 36 5 54471914 54471914 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170402 exon5 c.G565A p.E189K . . . SKIV2L2 23517 broad.mit.edu 36 5 54639715 54639715 + Silent SNP G C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015360 exon1 c.G117C p.G39G . . . SLC38A9 153129 broad.mit.edu 36 5 54980802 54980802 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173514 exon11 c.T1050G p.F350L . . . DDX4 54514 broad.mit.edu 36 5 55146928 55146928 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166533 exon20 c.G1957A p.E653K . . . KIAA0947 23379 broad.mit.edu 36 5 5516259 5516259 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015325 exon13 c.A3812C p.Q1271P . . . MIER3 166968 broad.mit.edu 36 5 56254923 56254923 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152622 exon13 c.G1439T p.R480I . . . ACTBL2 345651 broad.mit.edu 36 5 56814176 56814176 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017992 exon1 c.C116A p.P39H . . . PLK2 10769 broad.mit.edu 36 5 57788159 57788159 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006622 exon9 c.G1171T p.E391X . . . HTR1A 3350 broad.mit.edu 36 5 63292560 63292560 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000524 exon1 c.C743T p.P248L . . . RNF180 285671 broad.mit.edu 36 5 63545217 63545217 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_178532 exon4 c.C308A p.P103Q . . . RNF180 285671 broad.mit.edu 36 5 63545352 63545352 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178532 exon4 c.A443G p.D148G . . . TRIM23 373 broad.mit.edu 36 5 64928756 64928756 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033228 exon8 c.G1187A p.R396Q . . . TRIM23 373 broad.mit.edu 36 5 64941004 64941004 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033228 exon6 c.G866A p.R289Q . . . TRIM23 373 broad.mit.edu 36 5 64945773 64945773 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033228 exon3 c.A274C p.N92H . . . ERBB2IP 55914 broad.mit.edu 36 5 65385431 65385431 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018695 exon21 c.T2529C p.C843C . . . CD180 4064 broad.mit.edu 36 5 66515356 66515356 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005582 exon3 c.G1071T p.K357N . . . PIK3R1 5295 broad.mit.edu 36 5 67558413 67558413 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181523 exon1 c.G154T p.E52X . . . BDP1 55814 broad.mit.edu 36 5 70841715 70841715 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018429 exon17 c.G3040A p.A1014T . . . MAP1B 4131 broad.mit.edu 36 5 71531076 71531076 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005909 exon5 c.G6138T p.E2046D . . . TNPO1 3842 broad.mit.edu 36 5 72197248 72197248 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153188 exon6 c.C508T p.R170C . . . TNPO1 3842 broad.mit.edu 36 5 72228660 72228660 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153188 exon20 c.T2240G p.I747S . . . TMEM174 134288 broad.mit.edu 36 5 72505202 72505202 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153217 exon1 c.A376C p.N126H . . . ANKRA2 57763 broad.mit.edu 36 5 72894260 72894260 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023039 exon2 c.T203G p.F68C . . . RGNEF 64283 broad.mit.edu 36 5 73189720 73189720 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177693 exon16 c.C1967T p.A656V . . . GCNT4 51301 broad.mit.edu 36 5 74360520 74360520 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016591 exon1 c.C1099T p.R367C . . . GCNT4 51301 broad.mit.edu 36 5 74360824 74360824 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016591 exon1 c.C795A p.F265L . . . POC5 134359 broad.mit.edu 36 5 75044444 75044444 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099271 exon2 c.G75A p.S25S . . . SV2C 22987 broad.mit.edu 36 5 75623350 75623350 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014979 exon8 c.T1250G p.I417S . . . IQGAP2 10788 broad.mit.edu 36 5 75929078 75929078 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006633 exon10 c.G966A p.T322T . . . PDE8B 8622 broad.mit.edu 36 5 76660632 76660632 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003719 exon4 c.C644T p.S215L . . . SCAMP1 9522 broad.mit.edu 36 5 77790835 77790835 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004866 exon8 c.C745A p.H249N . . . ARSB 411 broad.mit.edu 36 5 78287072 78287072 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000046 exon4 c.C700A p.L234I . . . BHMT2 23743 broad.mit.edu 36 5 78414508 78414508 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178005 exon4 c.G379T p.E127X . . . BHMT 635 broad.mit.edu 36 5 78462633 78462633 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001713 exon8 c.G1159T p.E387X . . . HOMER1 9456 broad.mit.edu 36 5 78782572 78782572 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004272 exon3 c.G291A p.S97S . . . CMYA5 202333 broad.mit.edu 36 5 79062783 79062783 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153610 exon2 c.G2439T p.K813N CMYA5,lung,NS,Substitution - Missense,+1 . . CMYA5 202333 broad.mit.edu 36 5 79064463 79064463 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153610 exon2 c.C4119T p.I1373I . . . CMYA5 202333 broad.mit.edu 36 5 79066534 79066534 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153610 exon2 c.A6190G p.T2064A . . . CMYA5 202333 broad.mit.edu 36 5 79069562 79069562 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153610 exon2 c.C9218A p.P3073Q . . . FASTKD3 79072 broad.mit.edu 36 5 7914699 7914699 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024091 exon5 c.A1766C p.K589T . . . MTX3 345778 broad.mit.edu 36 5 79321813 79321813 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010891 exon3 c.G154A p.D52N . . . THBS4 7060 broad.mit.edu 36 5 79402653 79402653 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003248 exon13 c.C1614A p.I538I . . . THBS4 7060 broad.mit.edu 36 5 79414711 79414711 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003248 exon22 c.C2877T p.F959F . . . SPZ1 84654 broad.mit.edu 36 5 79652397 79652397 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032567 exon1 c.G607A p.A203T . . . ZFYVE16 9765 broad.mit.edu 36 5 79769474 79769474 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105251 exon4 c.A1214C p.D405A . . . ZFYVE16 9765 broad.mit.edu 36 5 79769953 79769953 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105251 exon4 c.G1693T p.D565Y . . . ZFYVE16 9765 broad.mit.edu 36 5 79776852 79776852 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105251 exon7 c.G2596T p.E866X . . . VCAN 1462 broad.mit.edu 36 5 82821811 82821811 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164097 exon3 c.A209G p.E70G . . . VCAN 1462 broad.mit.edu 36 5 82853255 82853255 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164098 exon7 c.G3374A p.R1125H . . . VCAN 1462 broad.mit.edu 36 5 82871105 82871105 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164097 exon7 c.C3566A p.S1189Y . . . EDIL3 10085 broad.mit.edu 36 5 83396309 83396309 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005711 exon8 c.T918G p.T306T . . . RASA1 5921 broad.mit.edu 36 5 86716939 86716939 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002890 exon22 c.A2824C p.N942H . . . MEF2C 4208 broad.mit.edu 36 5 88083600 88083600 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193350 exon5 c.A419G p.N140S . . . MEF2C 4208 broad.mit.edu 36 5 88092568 88092568 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193347 exon6 c.A449C p.K150T . . . GPR98 84059 broad.mit.edu 36 5 90021533 90021533 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032119 exon30 c.T6590G p.L2197R . . . GPR98 84059 broad.mit.edu 36 5 90025621 90025621 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032119 exon33 c.C7292T p.A2431V . . . GPR98 84059 broad.mit.edu 36 5 90060380 90060380 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032119 exon49 c.T10300G p.L3434V . . . GPR98 84059 broad.mit.edu 36 5 90142158 90142158 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032119 exon74 c.T15325C p.W5109R . . . GPR98 84059 broad.mit.edu 36 5 90172232 90172232 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032119 exon78 c.A16693G p.T5565A . . . ARRDC3 57561 broad.mit.edu 36 5 90714529 90714529 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020801 exon1 c.C137A p.S46Y . . . SEMA5A 9037 broad.mit.edu 36 5 9119581 9119581 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003966 exon17 c.G2251A p.E751K . . . BRD9 65980 broad.mit.edu 36 5 931568 931568 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023924 exon11 c.G1173A p.S391S . . . C5orf36 285600 broad.mit.edu 36 5 93881934 93881934 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145678 exon5 c.C745A p.L249I . . . FAM81B 153643 broad.mit.edu 36 5 94781768 94781768 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152548 exon5 c.C562T p.R188X . . . TTC37 9652 broad.mit.edu 36 5 94839762 94839762 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014639 exon40 c.A4353C p.L1451F . . . RHOBTB3 22836 broad.mit.edu 36 5 95098380 95098380 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014899 exon3 c.G260A p.R87Q . . . ERAP2 64167 broad.mit.edu 36 5 96274880 96274880 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022350 exon17 c.G2620A p.D874N . . . LNPEP 4012 broad.mit.edu 36 5 96376496 96376496 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005575 exon13 c.G2317A p.D773N . . . TAS2R1 50834 broad.mit.edu 36 5 9682596 9682596 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019599 exon1 c.C549A p.F183L . . . PRDM13 59336 broad.mit.edu 36 6 100163354 100163354 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021620 exon2 c.G161A p.G54E . . . SIM1 6492 broad.mit.edu 36 6 100975417 100975417 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005068 exon9 c.G1137T p.K379N . . . ASCC3 10973 broad.mit.edu 36 6 101182551 101182551 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006828 exon28 c.T4409C p.V1470A . . . ASCC3 10973 broad.mit.edu 36 6 101201255 101201255 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006828 exon22 c.G3590A p.R1197Q . . . ASCC3 10973 broad.mit.edu 36 6 101207434 101207434 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_006828 exon18 c.G2876A p.R959Q . . . GRIK2 2898 broad.mit.edu 36 6 101953917 101953917 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021956 exon1 c.C43T p.R15C . . . GRIK2 2898 broad.mit.edu 36 6 102354310 102354310 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021956 exon7 c.G1046A p.R349Q . . . BVES 11149 broad.mit.edu 36 6 105671344 105671344 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007073 exon6 c.A741C p.E247D . . . POPDC3 64208 broad.mit.edu 36 6 105713150 105713150 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022361 exon4 c.G764A p.R255K . . . GCNT2 2651 broad.mit.edu 36 6 10637587 10637587 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145649 exon3 c.G457A p.A153T . . . GCNT2 2651 broad.mit.edu 36 6 10664730 10664730 + Missense_Mutation SNP G A A rs55834933 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001491 exon1 c.G88A p.D30N . . . AIM1 202 broad.mit.edu 36 6 107079730 107079730 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001624 exon3 c.C3051A p.L1017L . . . QRSL1 55278 broad.mit.edu 36 6 107206896 107206896 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018292 exon6 c.C677T p.S226L . . . NR2E1 7101 broad.mit.edu 36 6 108608785 108608785 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003269 exon7 c.G821A p.R274Q . . . LACE1 246269 broad.mit.edu 36 6 108947615 108947615 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145315 exon12 c.C1226T p.S409L . . . LACE1 246269 broad.mit.edu 36 6 108950208 108950208 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145315 exon13 c.C1333T p.L445F . . . GCM2 9247 broad.mit.edu 36 6 10982978 10982978 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004752 exon5 c.G757T p.D253Y . . . GCM2 9247 broad.mit.edu 36 6 10985540 10985540 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004752 exon2 c.G162A p.E54E . . . SYCP2L 221711 broad.mit.edu 36 6 11002401 11002401 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040274 exon4 c.T314G p.I105S . . . SYCP2L 221711 broad.mit.edu 36 6 11038615 11038615 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040274 exon19 c.C1515A p.F505L . . . CDC40 51362 broad.mit.edu 36 6 110656815 110656815 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015891 exon14 c.T1505G p.F502C . . . C6orf186 728464 broad.mit.edu 36 6 110673921 110673921 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001123364 exon5 c.C1022A p.P341H . . . SLC22A16 85413 broad.mit.edu 36 6 110870164 110870164 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033125 exon4 c.G1159A p.E387K . . . ELOVL2 54898 broad.mit.edu 36 6 11113670 11113670 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017770 exon3 c.G176T p.R59I . . . ERVFRDE1 405754 broad.mit.edu 36 6 11212855 11212855 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207582 exon2 c.G675A p.A225A . . . FYN 2534 broad.mit.edu 36 6 112131961 112131961 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002037 exon7 c.C481T p.R161X . . . LAMA4 3910 broad.mit.edu 36 6 112550057 112550057 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105207 exon32 c.C4307T p.A1436V . . . LAMA4 3910 broad.mit.edu 36 6 112619634 112619634 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105207 exon6 c.C615A p.V205V . . . HS3ST5 222537 broad.mit.edu 36 6 114485141 114485141 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153612 exon2 c.C1014A p.I338I . . . HS3ST5 222537 broad.mit.edu 36 6 114485646 114485646 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153612 exon2 c.A509G p.Y170C . . . FRK 2444 broad.mit.edu 36 6 116384459 116384459 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002031 exon5 c.G807T p.M269I . . . FRK 2444 broad.mit.edu 36 6 116396526 116396526 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002031 exon3 c.G536A p.R179Q . . . TSPYL4 23270 broad.mit.edu 36 6 116681414 116681414 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021648 exon1 c.G451A p.E151K . . . TMEM170B 100113407 broad.mit.edu 36 6 11683670 11683670 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100829 exon3 c.T289C p.Y97H . . . DSE 29940 broad.mit.edu 36 6 116863451 116863451 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080976 exon6 c.G1127A p.G376D . . . FAM26F 441168 broad.mit.edu 36 6 116891355 116891355 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010919 exon3 c.G742T p.E248X . . . RSPH4A 345895 broad.mit.edu 36 6 117055570 117055570 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161664 exon3 c.G1007A p.R336H . . . RSPH4A 345895 broad.mit.edu 36 6 117058386 117058386 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010892 exon5 c.G1894A p.A632T . . . GPRC6A 222545 broad.mit.edu 36 6 117220770 117220770 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148963 exon6 c.T2009G p.F670C . . . ROS1 6098 broad.mit.edu 36 6 117822043 117822043 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002944 exon10 c.G1139T p.R380I . . . ROS1 6098 broad.mit.edu 36 6 117822559 117822559 + Nonsense_Mutation SNP T A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002944 exon9 c.A892T p.K298X . . . DCBLD1 285761 broad.mit.edu 36 6 117967118 117967118 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173674 exon9 c.G984A p.R328R . . . NUS1 116150 broad.mit.edu 36 6 118120910 118120910 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138459 exon2 c.G428T p.R143I . . . SLC35F1 222553 broad.mit.edu 36 6 118703402 118703402 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029858 exon5 c.G725A p.R242Q . . . C6orf204 387119 broad.mit.edu 36 6 118909663 118909663 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178035 exon9 c.G1726T p.E576X . . . FAM184A 79632 broad.mit.edu 36 6 119343109 119343109 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024581 exon10 c.G2194A p.E732K . . . FAM184A 79632 broad.mit.edu 36 6 119382845 119382845 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024581 exon4 c.G1329A p.E443E . . . C6orf170 221322 broad.mit.edu 36 6 121523869 121523869 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152730 exon23 c.G2603T p.R868I . . . C6orf170 221322 broad.mit.edu 36 6 121604384 121604384 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152730 exon19 c.A2171C p.K724T . . . HIVEP1 3096 broad.mit.edu 36 6 12232135 12232135 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002114 exon4 c.C4121T p.T1374M . . . TRDN 10345 broad.mit.edu 36 6 123632705 123632705 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006073 exon31 c.C1726T p.P576S . . . EDN1 1906 broad.mit.edu 36 6 12400716 12400716 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168319 exon2 c.T218G p.V73G . . . LAMA2 3908 broad.mit.edu 36 6 129691137 129691137 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079823 exon29 c.C4198T p.R1400X . . . LAMA2 3908 broad.mit.edu 36 6 129732798 129732798 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079823 exon34 c.C4929T p.L1643L . . . L3MBTL3 84456 broad.mit.edu 36 6 130414220 130414220 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032438 exon6 c.G423A p.Q141Q . . . ENPP1 5167 broad.mit.edu 36 6 132210623 132210623 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006208 exon2 c.T255C p.C85C . . . ENPP1 5167 broad.mit.edu 36 6 132232251 132232251 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006208 exon13 c.A1334C p.K445T . . . STX7 8417 broad.mit.edu 36 6 132835170 132835170 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003569 exon4 c.G193T p.E65X . . . TAAR9 134860 broad.mit.edu 36 6 132901484 132901484 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175057 exon1 c.T363C p.F121F . . . TAAR6 319100 broad.mit.edu 36 6 132933579 132933579 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175067 exon1 c.C426A p.T142T . . . TAAR1 134864 broad.mit.edu 36 6 133008529 133008529 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138327 exon1 c.G307A p.D103N . . . EYA4 2070 broad.mit.edu 36 6 133878211 133878211 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172103 exon16 c.C1492A p.L498M . . . FOXF2 2295 broad.mit.edu 36 6 1339980 1339980 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001452 exon2 c.G1222T p.D408Y . . . SLC2A12 154091 broad.mit.edu 36 6 134354126 134354126 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145176 exon5 c.A1714C p.N572H . . . SGK1 6446 broad.mit.edu 36 6 134533854 134533854 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143676 exon12 c.C1323T p.F441F . . . MYB 4602 broad.mit.edu 36 6 135560094 135560094 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161656 exon10 c.C1497T p.D499D . . . PDE7B 27115 broad.mit.edu 36 6 136471628 136471628 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018945 exon3 c.A149G p.D50G . . . MAP7 9053 broad.mit.edu 36 6 136752312 136752312 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198614 exon5 c.G347A p.R116Q . . . MAP3K5 4217 broad.mit.edu 36 6 137060091 137060091 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005923 exon5 c.G934T p.D312Y . . . SLC35D3 340146 broad.mit.edu 36 6 137287110 137287110 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008783 exon2 c.G834A p.E278E . . . RANBP9 10048 broad.mit.edu 36 6 13730636 13730636 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005493 exon14 c.A2127G p.G709G . . . CD83 9308 broad.mit.edu 36 6 14239822 14239822 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004233 exon3 c.C246T p.F82F . . . GPR126 57211 broad.mit.edu 36 6 142753133 142753133 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001032394 exon6 c.G1184A p.R395H . . . HIVEP2 3097 broad.mit.edu 36 6 143124371 143124371 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006734 exon8 c.C5543A p.S1848Y . . . HIVEP2 3097 broad.mit.edu 36 6 143127674 143127674 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006734 exon7 c.C5473T p.R1825W . . . HIVEP2 3097 broad.mit.edu 36 6 143134126 143134126 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006734 exon5 c.C3443T p.S1148L . . . HIVEP2 3097 broad.mit.edu 36 6 143134866 143134866 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006734 exon5 c.G2703A p.E901E . . . PEX3 8504 broad.mit.edu 36 6 143835042 143835042 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003630 exon8 c.G631T p.E211X . . . UTRN 7402 broad.mit.edu 36 6 144801627 144801627 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007124 exon11 c.C1295T p.A432V . . . UTRN 7402 broad.mit.edu 36 6 144810064 144810064 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007124 exon14 c.G1639A p.E547K . . . UTRN 7402 broad.mit.edu 36 6 144825635 144825635 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007124 exon22 c.C3006T p.V1002V . . . UTRN 7402 broad.mit.edu 36 6 145198662 145198662 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007124 exon69 c.C9719T p.S3240F . . . SHPRH 257218 broad.mit.edu 36 6 146287663 146287663 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173082 exon17 c.C3334T p.R1112X . . . SHPRH 257218 broad.mit.edu 36 6 146290065 146290065 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173082 exon15 c.C3181T p.R1061C . . . STXBP5 134957 broad.mit.edu 36 6 147676774 147676774 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127715 exon12 c.G1207A p.E403K . . . LATS1 9113 broad.mit.edu 36 6 150047016 150047016 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004690 exon4 c.C902A p.P301H . . . PLEKHG1 57480 broad.mit.edu 36 6 151172499 151172499 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029884 exon11 c.G1214A p.R405H . . . PLEKHG1 57480 broad.mit.edu 36 6 151203565 151203565 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029884 exon17 c.C3998T p.P1333L . . . MTHFD1L 25902 broad.mit.edu 36 6 151299756 151299756 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015440 exon12 c.G1380A p.T460T . . . C6orf211 79624 broad.mit.edu 36 6 151821176 151821176 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024573 exon3 c.G168T p.K56N . . . C6orf97 80129 broad.mit.edu 36 6 151948889 151948889 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025059 exon7 c.G1265A p.R422Q . . . C6orf97 80129 broad.mit.edu 36 6 151959352 151959352 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025059 exon9 c.C1657T p.R553X . . . C6orf97 80129 broad.mit.edu 36 6 151978345 151978345 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025059 exon10 c.G1785T p.E595D . . . SYNE1 23345 broad.mit.edu 36 6 152552174 152552174 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015293 exon43 c.A6779G p.D2260G . . . SYNE1 23345 broad.mit.edu 36 6 152574371 152574371 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015293 exon39 c.A6112C p.I2038L . . . SYNE1 23345 broad.mit.edu 36 6 152807327 152807327 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033071 exon30 c.C3770A p.S1257Y . . . SYNE1 23345 broad.mit.edu 36 6 152810362 152810362 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033071 exon29 c.A3614G p.N1205S . . . SYNE1 23345 broad.mit.edu 36 6 152816436 152816436 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033071 exon25 c.G3026A p.R1009Q . . . SYNE1 23345 broad.mit.edu 36 6 152902796 152902796 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033071 exon3 c.C121T p.L41L . . . FBXO5 26271 broad.mit.edu 36 6 153334114 153334114 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012177 exon5 c.G1221A p.T407T . . . MTRF1L 54516 broad.mit.edu 36 6 153352900 153352900 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019041 exon7 c.G966T p.E322D . . . TIAM2 26230 broad.mit.edu 36 6 155493085 155493085 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012454 exon3 c.G1036T p.A346S . . . TIAM2 26230 broad.mit.edu 36 6 155510967 155510967 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012454 exon6 c.T1835G p.V612G . . . ARID1B 57492 broad.mit.edu 36 6 157564116 157564116 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017519 exon17 c.C4657T p.R1553C . . . ARID1B 57492 broad.mit.edu 36 6 157569825 157569825 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017519 exon19 c.G5819A p.R1940H . . . ZDHHC14 79683 broad.mit.edu 36 6 157883747 157883747 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153746 exon2 c.G388A p.D130N . . . SNX9 51429 broad.mit.edu 36 6 158247160 158247160 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016224 exon7 c.T633C p.F211F . . . SYNJ2 8871 broad.mit.edu 36 6 158433985 158433985 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003898 exon26 c.A3605G p.D1202G . . . TMEM181 57583 broad.mit.edu 36 6 158966757 158966757 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020823 exon13 c.C1503T p.F501F . . . EZR 7430 broad.mit.edu 36 6 159126555 159126555 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111077 exon5 c.C241T p.R81W . . . SOD2 6648 broad.mit.edu 36 6 160023603 160023603 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024466 exon4 c.A464C p.K155T . . . WTAP 9589 broad.mit.edu 36 6 160080015 160080015 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004906 exon3 c.C34T p.R12X . . . TCP1 6950 broad.mit.edu 36 6 160120934 160120934 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030752 exon10 c.A1273C p.N425H . . . PNLDC1 154197 broad.mit.edu 36 6 160161502 160161502 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173516 exon19 c.C1526T p.A509V . . . IGF2R 3482 broad.mit.edu 36 6 160429111 160429111 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000876 exon42 c.G6262A p.A2088T . . . IGF2R 3482 broad.mit.edu 36 6 160431030 160431030 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000876 exon44 c.C6560T p.A2187V . . . LPA 4018 broad.mit.edu 36 6 160886468 160886468 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005577 exon34 c.C5392A p.L1798I . . . PLG 5340 broad.mit.edu 36 6 161063490 161063490 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000301 exon10 c.G1157A p.R386Q . . . PLG 5340 broad.mit.edu 36 6 161080200 161080200 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000301 exon16 c.G1988A p.R663Q . . . MAP3K4 4216 broad.mit.edu 36 6 161390078 161390078 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006724 exon3 c.G784A p.E262K . . . MYLIP 29116 broad.mit.edu 36 6 16253281 16253281 + Silent SNP C T T rs72833427 by1000genomes TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013262 exon6 c.C1002T p.G334G . . . GMPR 2766 broad.mit.edu 36 6 16355117 16355117 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006877 exon2 c.C153T p.I51I . . . ATXN1 6310 broad.mit.edu 36 6 16436358 16436358 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000332 exon8 c.C163T p.H55Y . . . RPS6KA2 6196 broad.mit.edu 36 6 166782222 166782222 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021135 exon14 c.G1312A p.D438N . . . FGFR1OP 11116 broad.mit.edu 36 6 167337760 167337760 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194429 exon5 c.C319T p.R107X . . . TTLL2 83887 broad.mit.edu 36 6 167674867 167674867 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031949 exon3 c.T1489G p.F497V . . . KIF25 3834 broad.mit.edu 36 6 168182243 168182243 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030615 exon5 c.C479T p.A160V . . . WDR27 253769 broad.mit.edu 36 6 169810202 169810202 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182552 exon5 c.G461A p.R154Q . . . WDR27 253769 broad.mit.edu 36 6 169830952 169830952 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182552 exon2 c.T75C p.V25V . . . C6orf70 55780 broad.mit.edu 36 6 169898773 169898773 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018341 exon5 c.C451A p.L151I . . . NUP153 9972 broad.mit.edu 36 6 17745583 17745583 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005124 exon16 c.G2244A p.P748P . . . KIF13A 63971 broad.mit.edu 36 6 17960230 17960230 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022113 exon7 c.C517T p.R173X . . . KDM1B 221656 broad.mit.edu 36 6 18308686 18308686 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153042 exon11 c.G863A p.R288Q . . . KDM1B 221656 broad.mit.edu 36 6 18330169 18330169 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153042 exon18 c.C1740T p.G580G . . . MBOAT1 154141 broad.mit.edu 36 6 20232683 20232683 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080480 exon8 c.G842A p.R281Q . . . PRL 5617 broad.mit.edu 36 6 22398525 22398525 + Nonsense_Mutation SNP G A A rs6238 byCluster;byHapMap TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000948 exon4 c.C349T p.R117X . . . HDGFL1 154150 broad.mit.edu 36 6 22677981 22677981 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138574 exon1 c.C198T p.F66F . . . KIAA0319 9856 broad.mit.edu 36 6 24689172 24689172 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168377 exon7 c.G1240A p.A414T . . . FAM65B 9750 broad.mit.edu 36 6 24958905 24958905 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015864 exon10 c.C697T p.R233W . . . SLC17A1 6568 broad.mit.edu 36 6 25907120 25907120 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005074 exon12 c.G1276A p.E426K . . . BTN2A2 10385 broad.mit.edu 36 6 26500599 26500599 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006995 exon8 c.C997A p.P333T . . . BTN3A1 11119 broad.mit.edu 36 6 26521682 26521682 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145008 exon10 c.G1169A p.R390Q . . . ZNF391 346157 broad.mit.edu 36 6 27477102 27477102 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001076781 exon3 c.G974T p.R325I . . . ZNF184 7738 broad.mit.edu 36 6 27527202 27527202 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007149 exon6 c.G2115T p.K705N . . . ZNF184 7738 broad.mit.edu 36 6 27532629 27532629 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007149 exon5 c.G253A p.E85K . . . HIST1H2BL 8340 broad.mit.edu 36 6 27883284 27883284 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003519 exon1 c.A380G p.X127X . . . OR2B6 26212 broad.mit.edu 36 6 28033270 28033270 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012367 exon1 c.A273C p.V91V . . . ZNF192 7745 broad.mit.edu 36 6 28224236 28224236 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006298 exon2 c.C72T p.I24I . . . GPX5 2880 broad.mit.edu 36 6 28601847 28601847 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003996 exon1 c.G78T p.E26D . . . ZNF311 282890 broad.mit.edu 36 6 29071034 29071034 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010877 exon7 c.G1724T p.R575I . . . ZNF311 282890 broad.mit.edu 36 6 29071122 29071122 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010877 exon7 c.C1636T p.R546X . . . OR2J3 442186 broad.mit.edu 36 6 29188269 29188269 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005216 exon1 c.T623C p.I208T . . . MOG 4340 broad.mit.edu 36 6 29746072 29746072 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002433 exon6 c.A628G p.T210A . . . TRIM10 10107 broad.mit.edu 36 6 30230169 30230169 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006778 exon7 c.C1002A p.F334L . . . MDC1 9656 broad.mit.edu 36 6 30787840 30787840 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014641 exon5 c.G1858A p.A620T . . . MICB 4277 broad.mit.edu 36 6 31582058 31582058 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005931 exon3 c.C485T p.A162V . . . TUBB2B 347733 broad.mit.edu 36 6 3171445 3171445 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178012 exon3 c.C224T p.S75L . . . MSH5 4439 broad.mit.edu 36 6 31836534 31836534 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025259 exon20 c.G1952A p.R651Q . . . SLC44A4 80736 broad.mit.edu 36 6 31947294 31947294 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178044 exon7 c.A427G p.T143A . . . TNXB 7148 broad.mit.edu 36 6 32123667 32123667 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019105 exon30 c.C10140T p.F3380F . . . TNXB 7148 broad.mit.edu 36 6 32125929 32125929 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019105 exon27 c.A9257G p.D3086G . . . TNXB 7148 broad.mit.edu 36 6 32128603 32128603 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019105 exon26 c.C8931T p.F2977F . . . ATF6B 1388 broad.mit.edu 36 6 32203954 32203954 + Silent SNP C T T rs1129551 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004381 exon1 c.G9A p.E3E . . . FKBPL 63943 broad.mit.edu 36 6 32204872 32204872 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022110 exon2 c.C664T p.R222X . . . NOTCH4 4855 broad.mit.edu 36 6 32277014 32277014 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004557 exon22 c.A3997T p.K1333X . . . PSMB9 5698 broad.mit.edu 36 6 32933814 32933814 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002800 exon4 c.T315G p.N105K . . . BRD2 6046 broad.mit.edu 36 6 33056338 33056338 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005104 exon13 c.G2271A p.A757A . . . HLA-DPA1 3113 broad.mit.edu 36 6 33145417 33145417 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033554 exon2 c.A325G p.N109D . . . COL11A2 1302 broad.mit.edu 36 6 33247222 33247222 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080681 exon41 c.G3000T p.K1000N . . . COL11A2 1302 broad.mit.edu 36 6 33262417 33262417 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080681 exon5 c.C763T p.L255F . . . RING1 6015 broad.mit.edu 36 6 33287750 33287750 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002931 exon6 c.C1112T p.A371V . . . VPS52 6293 broad.mit.edu 36 6 33344841 33344841 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022553 exon6 c.G476A p.R159Q . . . ZBTB22 9278 broad.mit.edu 36 6 33391179 33391179 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005453 exon2 c.G1493A p.S498N . . . UHRF1BP1 54887 broad.mit.edu 36 6 34935036 34935036 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017754 exon14 c.A2925G p.L975L . . . SCUBE3 222663 broad.mit.edu 36 6 35304463 35304463 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152753 exon3 c.C303A p.F101L . . . C6orf81 221481 broad.mit.edu 36 6 35823064 35823064 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145028 exon4 c.G574A p.E192K . . . SRPK1 6732 broad.mit.edu 36 6 35946070 35946070 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003137 exon10 c.G957T p.E319D . . . SRPK1 6732 broad.mit.edu 36 6 35964570 35964570 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003137 exon4 c.A302C p.Q101P . . . SLC26A8 116369 broad.mit.edu 36 6 36027233 36027233 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052961 exon18 c.G2254A p.A752T . . . MAPK14 1432 broad.mit.edu 36 6 36183305 36183305 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001315 exon11 c.G937A p.D313N . . . C6orf89 221477 broad.mit.edu 36 6 36975304 36975304 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152734 exon2 c.G127T p.E43X . . . C6orf89 221477 broad.mit.edu 36 6 36999109 36999109 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152734 exon8 c.G979A p.D327N . . . FTSJD2 23070 broad.mit.edu 36 6 37548220 37548220 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015050 exon16 c.G1668A p.S556S . . . MDGA1 266727 broad.mit.edu 36 6 37730653 37730653 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153487 exon5 c.C613T p.R205W . . . DNAH8 1769 broad.mit.edu 36 6 38898774 38898774 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001371 exon25 c.G3055A p.D1019N . . . DNAH8 1769 broad.mit.edu 36 6 38918421 38918421 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001371 exon33 c.C3958T p.R1320C . . . DNAH8 1769 broad.mit.edu 36 6 38939645 38939645 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001371 exon43 c.C5678T p.S1893F . . . DNAH8 1769 broad.mit.edu 36 6 39011383 39011383 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001371 exon75 c.T10844C p.V3615A . . . DNAH8 1769 broad.mit.edu 36 6 39065788 39065788 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001371 exon86 c.T12425G p.F4142C . . . GLP1R 2740 broad.mit.edu 36 6 39141989 39141989 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002062 exon5 c.C441A p.I147I . . . KCNK5 8645 broad.mit.edu 36 6 39267237 39267237 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003740 exon5 c.G907A p.D303N . . . KCNK16 83795 broad.mit.edu 36 6 39394786 39394786 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135106 exon2 c.C315T p.V105V . . . C6orf146 222826 broad.mit.edu 36 6 4014070 4014070 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173563 exon7 c.G1386A p.P462P . . . APOBEC2 10930 broad.mit.edu 36 6 41137247 41137247 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006789 exon2 c.G334A p.D112N . . . TREM1 54210 broad.mit.edu 36 6 41358128 41358128 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018643 exon2 c.G389A p.R130H . . . NCR2 9436 broad.mit.edu 36 6 41426496 41426496 + Silent SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004828 exon5 c.T747G p.V249V . . . TRERF1 55809 broad.mit.edu 36 6 42340466 42340466 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033502 exon7 c.A1589G p.H530R . . . UBR2 23304 broad.mit.edu 36 6 42712730 42712730 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015255 exon15 c.A1678C p.K560Q . . . UBR2 23304 broad.mit.edu 36 6 42739082 42739082 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015255 exon32 c.C3645T p.C1215C . . . UBR2 23304 broad.mit.edu 36 6 42741954 42741954 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015255 exon34 c.C3874T p.R1292C . . . SRF 6722 broad.mit.edu 36 6 43254021 43254021 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003131 exon5 c.G1174A p.A392T . . . CUL9 23113 broad.mit.edu 36 6 43274378 43274378 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015089 exon12 c.C2857T p.R953X . . . ABCC10 89845 broad.mit.edu 36 6 43511492 43511492 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198934 exon5 c.G1634A p.R545Q . . . GTPBP2 54676 broad.mit.edu 36 6 43700676 43700676 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019096 exon6 c.C807G p.H269Q . . . HSP90AB1 3326 broad.mit.edu 36 6 44325133 44325133 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007355 exon3 c.G189A p.S63S . . . AARS2 57505 broad.mit.edu 36 6 44379020 44379020 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020745 exon15 c.G2126T p.G709V . . . AARS2 57505 broad.mit.edu 36 6 44380006 44380006 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020745 exon14 c.A1897G p.T633A . . . CDC5L 988 broad.mit.edu 36 6 44522353 44522353 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001253 exon16 c.A2336G p.E779G . . . SUPT3H 8464 broad.mit.edu 36 6 45037525 45037525 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181356 exon9 c.C556T p.R186X . . . RUNX2 860 broad.mit.edu 36 6 45622832 45622832 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004348 exon7 c.C1336T p.P446S . . . TDRD6 221400 broad.mit.edu 36 6 46769595 46769595 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010870 exon1 c.C5771A p.S1924Y . . . MEP1A 4224 broad.mit.edu 36 6 46908829 46908829 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005588 exon11 c.C1204T p.R402C . . . GPR116 221395 broad.mit.edu 36 6 46942622 46942622 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098518 exon13 c.T1833G p.A611A . . . C6orf138 442213 broad.mit.edu 36 6 47955290 47955290 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013732 exon3 c.C1249T p.R417C . . . MUT 4594 broad.mit.edu 36 6 49535078 49535078 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000255 exon2 c.G61T p.E21X . . . RHAG 6005 broad.mit.edu 36 6 49693849 49693849 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000324 exon3 c.C383A p.S128Y . . . PGK2 5232 broad.mit.edu 36 6 49862492 49862492 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138733 exon1 c.G368A p.R123H . . . PGK2 5232 broad.mit.edu 36 6 49862855 49862855 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138733 exon1 c.C5A p.S2Y . . . TFAP2D 83741 broad.mit.edu 36 6 50826901 50826901 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172238 exon7 c.C1044T p.F348F . . . TFAP2B 7021 broad.mit.edu 36 6 50913678 50913678 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003221 exon5 c.C853T p.R285X . . . PKHD1 5314 broad.mit.edu 36 6 51990310 51990310 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170724 exon34 c.T5457C p.C1819C . . . PKHD1 5314 broad.mit.edu 36 6 51998759 51998759 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170724 exon32 c.G3808A p.E1270K . . . PKHD1 5314 broad.mit.edu 36 6 52001101 52001101 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170724 exon30 c.G3372T p.E1124D . . . FBXO9 26268 broad.mit.edu 36 6 53070564 53070564 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012347 exon12 c.G1321A p.A441T . . . FARS2 10667 broad.mit.edu 36 6 5313969 5313969 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006567 exon2 c.A167C p.K56T . . . GCLC 2729 broad.mit.edu 36 6 53471640 53471640 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001498 exon16 c.A1787C p.E596A . . . LRRC1 55227 broad.mit.edu 36 6 53814979 53814979 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018214 exon2 c.G272A p.R91Q . . . LRRC1 55227 broad.mit.edu 36 6 53869614 53869614 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018214 exon6 c.G532T p.E178X . . . COL21A1 81578 broad.mit.edu 36 6 56043507 56043507 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030820 exon21 c.C2014T p.L672F . . . COL21A1 81578 broad.mit.edu 36 6 56143550 56143550 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030820 exon5 c.T882G p.I294M . . . DST 667 broad.mit.edu 36 6 56462288 56462288 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015548 exon67 c.A12967C p.N4323H . . . DST 667 broad.mit.edu 36 6 56482586 56482586 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015548 exon55 c.C10956T p.I3652I . . . DST 667 broad.mit.edu 36 6 56541241 56541241 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015548 exon36 c.G6121A p.A2041T . . . DST 667 broad.mit.edu 36 6 56541327 56541327 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015548 exon36 c.A6035C p.K2012T . . . DST 667 broad.mit.edu 36 6 56590790 56590790 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001723 exon23 c.G6001T p.D2001Y . . . DST 667 broad.mit.edu 36 6 56590874 56590874 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001723 exon23 c.A5917G p.T1973A . . . DST 667 broad.mit.edu 36 6 56592697 56592697 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001723 exon23 c.A4094C p.K1365T . . . DST 667 broad.mit.edu 36 6 56604787 56604787 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015548 exon15 c.G2205T p.E735D . . . KIAA1586 57691 broad.mit.edu 36 6 57026067 57026067 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020931 exon4 c.G811T p.E271X . . . ZNF451 26036 broad.mit.edu 36 6 57119858 57119858 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015555 exon10 c.G1016A p.R339Q . . . ZNF451 26036 broad.mit.edu 36 6 57120721 57120721 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015555 exon10 c.T1879C p.S627P . . . ZNF451 26036 broad.mit.edu 36 6 57120800 57120800 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015555 exon10 c.G1958A p.R653Q . . . KHDRBS2 202559 broad.mit.edu 36 6 62669153 62669153 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152688 exon5 c.G566A p.G189D . . . BAI3 577 broad.mit.edu 36 6 69405682 69405682 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001704 exon3 c.C394T p.R132X . . . BAI3 577 broad.mit.edu 36 6 69697212 69697212 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001704 exon4 c.A798G p.R266R . . . COL9A1 1297 broad.mit.edu 36 6 71066580 71066580 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001851 exon4 c.G186A p.Q62Q . . . KHDC1 80759 broad.mit.edu 36 6 74008017 74008017 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030568 exon4 c.G451T p.V151L . . . CD109 135228 broad.mit.edu 36 6 74586947 74586947 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133493 exon32 c.A4102C p.N1368H . . . COL12A1 1303 broad.mit.edu 36 6 75894765 75894765 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004370 exon38 c.G6307A p.D2103N . . . COL12A1 1303 broad.mit.edu 36 6 75908558 75908558 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004370 exon27 c.G4867T p.D1623Y . . . COL12A1 1303 broad.mit.edu 36 6 75950362 75950362 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004370 exon9 c.G1216A p.A406T . . . TMEM30A 55754 broad.mit.edu 36 6 76022704 76022704 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018247 exon7 c.G920A p.R307Q . . . IMPG1 3617 broad.mit.edu 36 6 76771809 76771809 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001563 exon10 c.C1050A p.L350L . . . ELOVL4 6785 broad.mit.edu 36 6 80691405 80691405 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022726 exon3 c.A352G p.N118D . . . PGM3 5238 broad.mit.edu 36 6 83936835 83936835 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015599 exon12 c.G1447T p.D483Y . . . PGM3 5238 broad.mit.edu 36 6 83946405 83946405 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015599 exon7 c.G788A p.G263E . . . ME1 4199 broad.mit.edu 36 6 83995288 83995288 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002395 exon10 c.G1108T p.E370X . . . CYB5R4 51167 broad.mit.edu 36 6 84659964 84659964 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016230 exon3 c.C234T p.F78F . . . MRAP2 112609 broad.mit.edu 36 6 84855547 84855547 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138409 exon4 c.G246T p.E82D . . . MRAP2 112609 broad.mit.edu 36 6 84855756 84855756 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138409 exon4 c.G455T p.G152V . . . KIAA1009 22832 broad.mit.edu 36 6 84940495 84940495 + Silent SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014895 exon16 c.A2157C p.G719G . . . HTR1E 3354 broad.mit.edu 36 6 87782340 87782340 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000865 exon2 c.C569T p.A190V . . . ZNF292 23036 broad.mit.edu 36 6 88025501 88025501 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015021 exon8 c.T5435G p.F1812C . . . C6orf165 154313 broad.mit.edu 36 6 88180316 88180316 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031743 exon4 c.G262A p.D88N . . . RARS2 57038 broad.mit.edu 36 6 88315060 88315060 + De_novo_Start_OutOfFrame SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020320 exon6 c.T419G p.F140C . . . ORC3 23595 broad.mit.edu 36 6 88388422 88388422 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012381 exon11 c.C1157T p.A386V . . . RNGTT 8732 broad.mit.edu 36 6 89695636 89695636 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003800 exon3 c.G244T p.E82X . . . RNGTT 8732 broad.mit.edu 36 6 89695653 89695653 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003800 exon3 c.G227A p.R76Q . . . GABRR2 2570 broad.mit.edu 36 6 90024391 90024391 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002043 exon9 c.C1190A p.S397X . . . ANKRD6 22881 broad.mit.edu 36 6 90388384 90388384 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014942 exon10 c.G815A p.R272Q . . . MDN1 23195 broad.mit.edu 36 6 90416627 90416627 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014611 exon97 c.G16043A p.R5348Q . . . MDN1 23195 broad.mit.edu 36 6 90454589 90454589 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014611 exon67 c.C11284T p.R3762C . . . CASP8AP2 9994 broad.mit.edu 36 6 90629057 90629057 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001137667 exon7 c.C908T p.S303L . . . GJA10 84694 broad.mit.edu 36 6 90661744 90661744 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032602 exon1 c.G836T p.R279I . . . EPHA7 2045 broad.mit.edu 36 6 94123384 94123384 + Silent SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004440 exon5 c.A1096C p.R366R . . . C6orf167 253714 broad.mit.edu 36 6 97733046 97733046 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198468 exon18 c.C2673A p.F891L . . . SFRS18 25957 broad.mit.edu 36 6 99957170 99957170 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015491 exon10 c.G1294T p.E432X . . . ZAN 7455 broad.mit.edu 36 7 100199635 100199635 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173059 exon22 c.C4147A p.L1383I . . . ZAN 7455 broad.mit.edu 36 7 100201012 100201012 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173059 exon23 c.G4369A p.V1457M . . . ZAN 7455 broad.mit.edu 36 7 100204210 100204210 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173059 exon27 c.G5083A p.D1695N . . . MUC17 140453 broad.mit.edu 36 7 100471114 100471114 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040105 exon3 c.C9697T p.P3233S . . . MUC17 140453 broad.mit.edu 36 7 100488033 100488033 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040105 exon13 c.G13470A p.T4490T . . . CUX1 1523 broad.mit.edu 36 7 101628853 101628853 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181552 exon16 c.G1946T p.R649I . . . LRRC17 10234 broad.mit.edu 36 7 102361640 102361640 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005824 exon2 c.C44T p.A15V . . . SLC26A5 375611 broad.mit.edu 36 7 102806187 102806187 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206883 exon17 c.G1727A p.R576Q . . . RELN 5649 broad.mit.edu 36 7 103017291 103017291 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005045 exon28 c.C4133T p.S1378F . . . PUS7 54517 broad.mit.edu 36 7 104893021 104893021 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019042 exon13 c.C1602T p.F534F . . . RINT1 60561 broad.mit.edu 36 7 104970127 104970127 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021930 exon4 c.C310T p.R104X . . . ATXN7L1 222255 broad.mit.edu 36 7 105303502 105303502 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020725 exon2 c.A242C p.N81T . . . PIK3CG 5294 broad.mit.edu 36 7 106309805 106309805 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002649 exon7 c.G2546A p.R849Q . . . SLC26A4 5172 broad.mit.edu 36 7 107111005 107111005 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000441 exon7 c.C888T p.I296I . . . LAMB4 22798 broad.mit.edu 36 7 107458655 107458655 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007356 exon32 c.A4824C p.E1608D . . . LAMB4 22798 broad.mit.edu 36 7 107465240 107465240 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007356 exon30 c.C4508T p.A1503V . . . LAMB4 22798 broad.mit.edu 36 7 107479780 107479780 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007356 exon26 c.C3914T p.A1305V . . . NRCAM 4897 broad.mit.edu 36 7 107623495 107623495 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037132 exon12 c.G1409T p.R470M . . . C7orf66 154907 broad.mit.edu 36 7 108311530 108311530 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024607 exon2 c.C118A p.L40I . . . C7orf53 286006 broad.mit.edu 36 7 111914223 111914223 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134468 exon3 c.A137G p.D46G . . . PPP1R3A 5506 broad.mit.edu 36 7 113305370 113305370 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002711 exon4 c.G3013A p.E1005K . . . THSD7A 221981 broad.mit.edu 36 7 11423663 11423663 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T T T T Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_015204 exon16 c.A3476C p.K1159T . . . THSD7A 221981 broad.mit.edu 36 7 11452317 11452317 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015204 exon13 c.T2960C p.V987A . . . TES 26136 broad.mit.edu 36 7 115661893 115661893 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015641 exon2 c.G97A p.E33K . . . CAV2 858 broad.mit.edu 36 7 115927706 115927706 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001233 exon2 c.C307T p.L103F . . . MET 4233 broad.mit.edu 36 7 116204715 116204715 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000245 exon16 c.A3296G p.D1099G . . . CFTR 1080 broad.mit.edu 36 7 117022280 117022280 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000492 exon15 c.C2551T p.R851X . . . CFTR 1080 broad.mit.edu 36 7 117094279 117094279 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000492 exon27 c.A4324C p.S1442R . . . RNF148 378925 broad.mit.edu 36 7 122129678 122129678 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198085 exon1 c.G363T p.E121D . . . SLC13A1 6561 broad.mit.edu 36 7 122550490 122550490 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022444 exon12 c.G1276T p.E426X . . . IQUB 154865 broad.mit.edu 36 7 122892193 122892193 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178827 exon10 c.G1688T p.R563I . . . IQUB 154865 broad.mit.edu 36 7 122939487 122939487 + Silent SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178827 exon2 c.A144C p.G48G . . . ASB15 142685 broad.mit.edu 36 7 123043656 123043656 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080928 exon4 c.C163A p.H55N . . . ASB15 142685 broad.mit.edu 36 7 123056482 123056482 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080928 exon8 c.C1198A p.L400I . . . HYAL4 23553 broad.mit.edu 36 7 123296011 123296011 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012269 exon3 c.C448T p.R150X . . . GPR37 2861 broad.mit.edu 36 7 124174248 124174248 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005302 exon2 c.G1409A p.R470H . . . PAX4 5078 broad.mit.edu 36 7 127040322 127040322 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006193 exon6 c.G681T p.M227I . . . TSPAN33 340348 broad.mit.edu 36 7 128594938 128594938 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178562 exon8 c.A839G p.D280G . . . CPA4 51200 broad.mit.edu 36 7 129735403 129735403 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163446 exon7 c.G624A p.T208T . . . TSGA13 114960 broad.mit.edu 36 7 130014649 130014649 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052933 exon5 c.G271T p.D91Y . . . PLXNA4 91584 broad.mit.edu 36 7 131468460 131468460 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020911 exon31 c.A5477G p.D1826G . . . SLC35B4 84912 broad.mit.edu 36 7 133631735 133631735 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032826 exon9 c.G697A p.G233R . . . AKR1B1 231 broad.mit.edu 36 7 133783301 133783301 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001628 exon7 c.G712A p.A238T . . . CALD1 800 broad.mit.edu 36 7 134293402 134293402 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033157 exon10 c.A1291C p.S431R . . . CALD1 800 broad.mit.edu 36 7 134300612 134300612 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033157 exon14 c.G1621T p.D541Y . . . WDR91 29062 broad.mit.edu 36 7 134546702 134546702 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014149 exon1 c.G93A p.E31E . . . STRA8 346673 broad.mit.edu 36 7 134593782 134593782 + Nonstop_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182489 exon9 c.T991G p.X331E . . . CNOT4 4850 broad.mit.edu 36 7 134748899 134748899 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190850 exon6 c.T565C p.S189P . . . CNOT4 4850 broad.mit.edu 36 7 134750541 134750541 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190850 exon4 c.G383A p.R128Q . . . NUP205 23165 broad.mit.edu 36 7 134938234 134938234 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015135 exon18 c.G2654A p.G885E . . . TRIM24 8805 broad.mit.edu 36 7 137912778 137912778 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003852 exon14 c.C2059T p.R687X . . . SVOPL 136306 broad.mit.edu 36 7 137931725 137931725 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174959 exon11 c.G988A p.E330K . . . ATP6V0A4 50617 broad.mit.edu 36 7 138095104 138095104 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_130840 exon7 c.G572A p.R191Q . . . ZC3HAV1L 92092 broad.mit.edu 36 7 138369905 138369905 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080660 exon2 c.G425A p.S142N . . . UBN2 254048 broad.mit.edu 36 7 138607614 138607614 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173569 exon9 c.C1603T p.R535C . . . ETV1 2115 broad.mit.edu 36 7 13937894 13937894 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163147 exon8 c.G560A p.R187H . . . SLC37A3 84255 broad.mit.edu 36 7 139728726 139728726 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032295 exon2 c.T70C p.F24L . . . DENND2A 27147 broad.mit.edu 36 7 139948196 139948196 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015689 exon1 c.C471A p.L157L . . . CLEC5A 23601 broad.mit.edu 36 7 141292509 141292509 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013252 exon2 c.T53G p.V18G . . . MGAM 8972 broad.mit.edu 36 7 141376661 141376661 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004668 exon11 c.G1252A p.D418N . . . EPHB6 2051 broad.mit.edu 36 7 142274131 142274131 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004445 exon9 c.T1397C p.V466A . . . TAS2R40 259286 broad.mit.edu 36 7 142630103 142630103 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176882 exon1 c.C810A p.I270I . . . EPHA1 2041 broad.mit.edu 36 7 142802699 142802699 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005232 exon12 c.C1918T p.R640X . . . CTAGE6P 340307 broad.mit.edu 36 7 143084327 143084327 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178561 exon1 c.A1358C p.K453T . . . OR2A5 393046 broad.mit.edu 36 7 143379197 143379197 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012365 exon1 c.T770C p.V257A . . . DGKB 1607 broad.mit.edu 36 7 14344779 14344779 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145695 exon22 c.T2011C p.S671P . . . CNTNAP2 26047 broad.mit.edu 36 7 146436254 146436254 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014141 exon5 c.C633A p.V211V . . . DGKB 1607 broad.mit.edu 36 7 14700323 14700323 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145695 exon8 c.G613T p.E205X . . . CNTNAP2 26047 broad.mit.edu 36 7 147500461 147500461 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014141 exon18 c.G2968A p.D990N . . . DGKB 1607 broad.mit.edu 36 7 14847370 14847370 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145695 exon1 c.T44G p.F15C . . . ZNF282 8427 broad.mit.edu 36 7 148535462 148535462 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003575 exon4 c.G799A p.E267K . . . GIMAP8 155038 broad.mit.edu 36 7 149805543 149805543 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175571 exon5 c.G1740T p.K580N . . . GIMAP6 474344 broad.mit.edu 36 7 149956420 149956420 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024711 exon3 c.G199A p.E67K . . . AGAP3 116988 broad.mit.edu 36 7 150470525 150470525 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031946 exon16 c.G2144A p.R715H . . . NUB1 51667 broad.mit.edu 36 7 150695938 150695938 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016118 exon10 c.G1046A p.R349Q . . . GALNTL5 168391 broad.mit.edu 36 7 151330858 151330858 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145292 exon6 c.G785T p.R262I . . . MLL3 58508 broad.mit.edu 36 7 151686618 151686618 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170606 exon2 c.G237A p.T79T . . . XRCC2 7516 broad.mit.edu 36 7 151976932 151976932 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005431 exon3 c.C571A p.L191I . . . PAXIP1 22976 broad.mit.edu 36 7 154398469 154398469 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_007349 exon6 c.C944G p.A315G . . . HTR5A 3361 broad.mit.edu 36 7 154507001 154507001 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024012 exon2 c.C945T p.I315I . . . PTPRN2 5799 broad.mit.edu 36 7 157054378 157054378 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130843 exon20 c.T2792C p.M931T . . . ISPD 729920 broad.mit.edu 36 7 16222330 16222330 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101417 exon8 c.T987G p.F329L . . . TSPAN13 27075 broad.mit.edu 36 7 16785154 16785154 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014399 exon5 c.G428A p.S143N . . . HDAC9 9734 broad.mit.edu 36 7 18596492 18596492 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178425 exon3 c.G273T p.Q91H . . . HDAC9 9734 broad.mit.edu 36 7 18960332 18960332 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178423 exon24 c.G2967A p.P989P . . . ITGB8 3696 broad.mit.edu 36 7 20386953 20386953 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002214 exon5 c.G775A p.A259T . . . ABCB5 340273 broad.mit.edu 36 7 20653722 20653722 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163941 exon10 c.G1021A p.A341T . . . ABCB5 340273 broad.mit.edu 36 7 20687705 20687705 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178559 exon6 c.G425A p.R142Q . . . DNAH11 8701 broad.mit.edu 36 7 21594231 21594231 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003777 exon10 c.C1735T p.L579L . . . DNAH11 8701 broad.mit.edu 36 7 21807290 21807290 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003777 exon62 c.G10059A p.S3353S . . . DNAH11 8701 broad.mit.edu 36 7 21898640 21898640 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003777 exon77 c.T12602C p.V4201A . . . CDCA7L 55536 broad.mit.edu 36 7 21908489 21908489 + Missense_Mutation SNP T G G rs16891988 byCluster TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127371 exon9 c.A1203C p.Q401H . . . IGF2BP3 10643 broad.mit.edu 36 7 23325309 23325309 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006547 exon11 c.T1293G p.L431L . . . STK31 56164 broad.mit.edu 36 7 23743130 23743130 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122833 exon8 c.G856T p.E286X . . . STK31 56164 broad.mit.edu 36 7 23775214 23775214 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122833 exon12 c.T1423A p.F475I . . . STK31 56164 broad.mit.edu 36 7 23793060 23793060 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122833 exon20 c.A2410C p.N804H . . . MPP6 51678 broad.mit.edu 36 7 24655832 24655832 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016447 exon5 c.C347A p.S116Y . . . MPP6 51678 broad.mit.edu 36 7 24656698 24656698 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016447 exon6 c.C493T p.R165X . . . NPVF 64111 broad.mit.edu 36 7 25232864 25232864 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022150 exon2 c.C445T p.Q149X . . . CREB5 9586 broad.mit.edu 36 7 28513817 28513817 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004904 exon4 c.C207T p.S69S . . . C7orf41 222166 broad.mit.edu 36 7 30141340 30141340 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152793 exon1 c.C63A p.L21L . . . GARS 2617 broad.mit.edu 36 7 30605016 30605016 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002047 exon2 c.G302A p.R101H . . . NEUROD6 63974 broad.mit.edu 36 7 31344845 31344845 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022728 exon2 c.T563C p.F188S . . . BBS9 27241 broad.mit.edu 36 7 33161782 33161782 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033605 exon4 c.G271A p.E91K . . . KIAA0895 23366 broad.mit.edu 36 7 36333031 36333031 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100425 exon7 c.C1426T p.R476C . . . ANLN 54443 broad.mit.edu 36 7 36402413 36402413 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018685 exon2 c.G32A p.R11Q . . . ANLN 54443 broad.mit.edu 36 7 36458715 36458715 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018685 exon24 c.A3356C p.K1119T . . . AOAH 313 broad.mit.edu 36 7 36546542 36546542 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001637 exon16 c.C1214T p.S405F . . . TXNDC3 51314 broad.mit.edu 36 7 37882997 37882997 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016616 exon12 c.T857C p.L286P . . . TXNDC3 51314 broad.mit.edu 36 7 37894406 37894406 + Nonsense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016616 exon15 c.T1250G p.L417X . . . POU6F2 11281 broad.mit.edu 36 7 39092109 39092109 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007252 exon3 c.C143T p.A48V . . . SDK1 221935 broad.mit.edu 36 7 3993388 3993388 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152744 exon14 c.C2039A p.S680Y . . . CDK13 8621 broad.mit.edu 36 7 40101090 40101090 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003718 exon14 c.G4525A p.G1509R . . . GLI3 2737 broad.mit.edu 36 7 41973775 41973775 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000168 exon14 c.G2375A p.R792Q . . . GLI3 2737 broad.mit.edu 36 7 42029616 42029616 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000168 exon10 c.C1473T p.F491F . . . GLI3 2737 broad.mit.edu 36 7 42046248 42046248 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000168 exon7 c.C942A p.P314P . . . AEBP1 165 broad.mit.edu 36 7 44116331 44116331 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129 exon11 c.A1261G p.T421A . . . GCK 2645 broad.mit.edu 36 7 44156129 44156129 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000162 exon5 c.C543T p.V181V . . . NUDCD3 23386 broad.mit.edu 36 7 44392179 44392179 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015332 exon6 c.G1042A p.D348N . . . PKD1L1 168507 broad.mit.edu 36 7 47802148 47802148 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138295 exon55 c.A8319G p.T2773T . . . ABCA13 154664 broad.mit.edu 36 7 48283761 48283761 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152701 exon15 c.G3789T p.E1263D . . . ABCA13 154664 broad.mit.edu 36 7 48284702 48284702 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152701 exon15 c.T4730C p.V1577A . . . ABCA13 154664 broad.mit.edu 36 7 48289286 48289286 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152701 exon16 c.A7786G p.K2596E . . . ABCA13 154664 broad.mit.edu 36 7 48289933 48289933 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152701 exon16 c.G8433T p.K2811N . . . RADIL 55698 broad.mit.edu 36 7 4840776 4840776 + Silent SNP G C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G C G C Unknown Valid Germline Phase_I Capture Illumina Illumina HiSeq NM_018059 exon4 c.C1404G p.R468R . . . ABCA13 154664 broad.mit.edu 36 7 48597380 48597380 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152701 exon55 c.A14427C p.G4809G . . . PAPOLB 56903 broad.mit.edu 36 7 4867733 4867733 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020144 exon1 c.G235A p.E79K . . . MMD2 221938 broad.mit.edu 36 7 4916154 4916154 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100600 exon6 c.C493T p.R165C . . . FIGNL1 63979 broad.mit.edu 36 7 50480913 50480913 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042762 exon4 c.G1567T p.E523X . . . ZNF479 90827 broad.mit.edu 36 7 57191862 57191862 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033273 exon5 c.G1202T p.R401I . . . ZNF479 90827 broad.mit.edu 36 7 57198337 57198337 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033273 exon3 c.G70A p.E24K . . . EIF2AK1 27102 broad.mit.edu 36 7 6049106 6049106 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134335 exon8 c.G772A p.D258N . . . CYTH3 9265 broad.mit.edu 36 7 6177434 6177434 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004227 exon7 c.G486A p.A162A . . . ZNF680 340252 broad.mit.edu 36 7 63620263 63620263 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_178558 exon4 c.G304T p.D102Y . . . RABGEF1 27342 broad.mit.edu 36 7 65911377 65911377 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014504 exon9 c.C1147T p.R383C . . . C7orf26 79034 broad.mit.edu 36 7 6606303 6606303 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024067 exon4 c.C899T p.T300M . . . TYW1 55253 broad.mit.edu 36 7 66101320 66101320 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018264 exon3 c.G217A p.D73N . . . WBSCR17 64409 broad.mit.edu 36 7 70768452 70768452 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022479 exon7 c.G1201A p.V401I . . . BAZ1B 9031 broad.mit.edu 36 7 72529329 72529329 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032408 exon7 c.G2398T p.E800X . . . TBL2 26608 broad.mit.edu 36 7 72625600 72625600 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012453 exon4 c.G584A p.G195D . . . TBL2 26608 broad.mit.edu 36 7 72626342 72626342 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012453 exon3 c.A308C p.K103T . . . ELN 2006 broad.mit.edu 36 7 73095415 73095415 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081755 exon8 c.G408T p.V136V . . . HIP1 3092 broad.mit.edu 36 7 75023383 75023383 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005338 exon18 c.C1710T p.F570F . . . HIP1 3092 broad.mit.edu 36 7 75030223 75030223 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005338 exon11 c.G972A p.E324E . . . MDH2 4191 broad.mit.edu 36 7 75531644 75531644 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005918 exon7 c.C685T p.R229W . . . PTPN12 5782 broad.mit.edu 36 7 77038361 77038361 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002835 exon2 c.A130G p.T44A . . . SEMA3C 10512 broad.mit.edu 36 7 80295973 80295973 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006379 exon3 c.A128C p.E43A . . . PCLO 27445 broad.mit.edu 36 7 82422561 82422561 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033026 exon5 c.A5644C p.K1882Q . . . PCLO 27445 broad.mit.edu 36 7 82423980 82423980 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033026 exon5 c.T4225G p.L1409V . . . PCLO 27445 broad.mit.edu 36 7 82623239 82623239 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033026 exon2 c.G654A p.P218P . . . SEMA3A 10371 broad.mit.edu 36 7 83430520 83430520 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006080 exon16 c.G1797A p.P599P . . . DBF4 10926 broad.mit.edu 36 7 87375116 87375116 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006716 exon12 c.G1727A p.R576Q . . . STEAP2 261729 broad.mit.edu 36 7 89697181 89697181 + Nonsense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152999 exon4 c.T1080G p.Y360X . . . AKAP9 10142 broad.mit.edu 36 7 91564137 91564137 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147185 exon41 c.C9904T p.R3302W . . . ANKIB1 54467 broad.mit.edu 36 7 91818316 91818316 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019004 exon8 c.A1202G p.D401G . . . CDK6 1021 broad.mit.edu 36 7 92242055 92242055 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001259 exon3 c.G260A p.R87Q . . . SAMD9 54809 broad.mit.edu 36 7 92570221 92570221 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193307 exon2 c.A3126G p.E1042E . . . SAMD9L 219285 broad.mit.edu 36 7 92599195 92599195 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152703 exon5 c.A4026G p.G1342G . . . SAMD9L 219285 broad.mit.edu 36 7 92602207 92602207 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152703 exon5 c.T1014G p.N338K . . . COL1A2 1278 broad.mit.edu 36 7 93890209 93890209 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000089 exon40 c.T2408G p.I803S . . . CASD1 64921 broad.mit.edu 36 7 94004982 94004982 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022900 exon9 c.A1106C p.Q369P . . . PON1 5444 broad.mit.edu 36 7 94766343 94766343 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000446 exon9 c.G917A p.R306Q . . . DYNC1I1 1780 broad.mit.edu 36 7 95277725 95277725 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004411 exon3 c.G194T p.S65I . . . TAC1 6863 broad.mit.edu 36 7 97200990 97200990 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013997 exon3 c.T143G p.F48C . . . LMTK2 22853 broad.mit.edu 36 7 97659135 97659135 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014916 exon11 c.C1422T p.F474F . . . BAIAP2L1 55971 broad.mit.edu 36 7 97777721 97777721 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018842 exon9 c.G927A p.P309P . . . TRRAP 8295 broad.mit.edu 36 7 98366193 98366193 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003496 exon25 c.C3395T p.A1132V . . . TRRAP 8295 broad.mit.edu 36 7 98440739 98440739 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003496 exon67 c.C10456T p.R3486W . . . TRRAP 8295 broad.mit.edu 36 7 98447818 98447818 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003496 exon71 c.C11397T p.F3799F . . . CPSF4 10898 broad.mit.edu 36 7 98889649 98889649 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081559 exon7 c.C620T p.A207V . . . OR2AE1 81392 broad.mit.edu 36 7 99312110 99312110 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005276 exon1 c.G483A p.A161A . . . TRIM4 89122 broad.mit.edu 36 7 99328140 99328140 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033017 exon7 c.G1085T p.R362I . . . ZNF3 7551 broad.mit.edu 36 7 99507530 99507530 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032924 exon6 c.C513T p.S171S . . . GIGYF1 64599 broad.mit.edu 36 7 100122271 100122273 + In_Frame_Del DEL CCT - - novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 CCT CCT Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022574 exon7 c.629_631del p.210_211del . . . AP4M1 9179 broad.mit.edu 36 7 99540804 99540807 + Frame_Shift_Del DEL GGGC - - novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 GGGC GGGC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004722 exon10 c.733_736del p.245_246del . . . ESRP1 54845 broad.mit.edu 36 8 95755786 95755787 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017697 exon12 c.1527_1528insA p.H509fs . . . SPAG1 6674 broad.mit.edu 36 8 101259232 101259232 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003114 exon4 c.G313A p.E105K . . . ANKRD46 157567 broad.mit.edu 36 8 101611075 101611075 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198401 exon4 c.C163T p.R55X . . . PABPC1 26986 broad.mit.edu 36 8 101799288 101799288 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002568 exon3 c.T392C p.V131A . . . GRHL2 79977 broad.mit.edu 36 8 102748035 102748035 + Silent SNP G A A rs61732855 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024915 exon16 c.G1806A p.S602S . . . RRM2B 50484 broad.mit.edu 36 8 103300296 103300296 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015713 exon6 c.T606C p.F202F . . . UBR5 51366 broad.mit.edu 36 8 103335759 103335759 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015902 exon59 c.C8347A p.L2783I . . . ODF1 4956 broad.mit.edu 36 8 103633319 103633319 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024410 exon1 c.G188A p.R63H . . . PRSS55 203074 broad.mit.edu 36 8 10433539 10433539 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198464 exon5 c.C885T p.I295I . . . FZD6 8323 broad.mit.edu 36 8 104405903 104405903 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164615 exon4 c.G393A p.E131E . . . DCAF13 25879 broad.mit.edu 36 8 104508586 104508586 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015420 exon5 c.G1010T p.R337I . . . RIMS2 9699 broad.mit.edu 36 8 104847801 104847801 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100117 exon3 c.G558A p.Q186Q . . . RIMS2 9699 broad.mit.edu 36 8 105018041 105018041 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100117 exon13 c.G2462A p.R821Q . . . RP1L1 94137 broad.mit.edu 36 8 10504965 10504965 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178857 exon4 c.A4053C p.E1351D . . . LRP12 29967 broad.mit.edu 36 8 105579141 105579141 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013437 exon5 c.C815T p.S272F . . . ABRA 137735 broad.mit.edu 36 8 107842563 107842563 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139166 exon2 c.C1024T p.R342C . . . RSPO2 340419 broad.mit.edu 36 8 109070572 109070572 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178565 exon3 c.G171T p.Q57H . . . TRHR 7201 broad.mit.edu 36 8 110169164 110169164 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003301 exon1 c.A247G p.I83V . . . TRHR 7201 broad.mit.edu 36 8 110200694 110200694 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003301 exon2 c.A1031C p.K344T . . . NUDCD1 84955 broad.mit.edu 36 8 110374800 110374800 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032869 exon4 c.A589C p.S197R . . . PKHD1L1 93035 broad.mit.edu 36 8 110520395 110520395 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177531 exon32 c.T3854G p.L1285R . . . PKHD1L1 93035 broad.mit.edu 36 8 110522725 110522725 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177531 exon34 c.A4145C p.K1382T . . . PKHD1L1 93035 broad.mit.edu 36 8 110560973 110560973 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177531 exon54 c.C9107A p.S3036Y . . . EBAG9 9166 broad.mit.edu 36 8 110632248 110632248 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198120 exon2 c.C19T p.R7W . . . EBAG9 9166 broad.mit.edu 36 8 110645881 110645881 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198120 exon7 c.G559A p.E187K . . . CSMD3 114788 broad.mit.edu 36 8 113387440 113387440 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198123 exon51 c.C8043T p.S2681S . . . CSMD3 114788 broad.mit.edu 36 8 113416849 113416849 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198123 exon45 c.C7050T p.I2350I . . . CSMD3 114788 broad.mit.edu 36 8 113419098 113419098 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198123 exon43 c.C6691T p.R2231X CSMD3,kidney,NS,Substitution - Missense,+1 . . CSMD3 114788 broad.mit.edu 36 8 113472163 113472163 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198123 exon36 c.A5840C p.K1947T . . . CSMD3 114788 broad.mit.edu 36 8 113726555 113726555 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198123 exon20 c.C3269A p.S1090Y . . . CSMD3 114788 broad.mit.edu 36 8 114180268 114180268 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198123 exon5 c.C810A p.T270T . . . TRPS1 7227 broad.mit.edu 36 8 116685372 116685372 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014112 exon4 c.T1999C p.S667P . . . C8orf85 441376 broad.mit.edu 36 8 118019698 118019698 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025357 exon1 c.G35T p.R12I . . . ENPP2 5168 broad.mit.edu 36 8 120667725 120667725 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130863 exon15 c.C1249A p.P417T . . . DEPDC6 64798 broad.mit.edu 36 8 121088286 121088286 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022783 exon7 c.G987T p.K329N . . . FBXO32 114907 broad.mit.edu 36 8 124594675 124594675 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058229 exon6 c.C595T p.R199W . . . ANXA13 312 broad.mit.edu 36 8 124776957 124776957 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004306 exon6 c.G437T p.G146V . . . FER1L6 654463 broad.mit.edu 36 8 125145920 125145920 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039112 exon26 c.C3480T p.V1160V . . . FER1L6 654463 broad.mit.edu 36 8 125200350 125200350 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039112 exon40 c.C5374T p.P1792S . . . RNF139 11236 broad.mit.edu 36 8 125568805 125568805 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007218 exon2 c.T1734G p.I578M . . . ZNF572 137209 broad.mit.edu 36 8 126058750 126058750 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152412 exon3 c.G1059T p.E353D . . . ZNF572 137209 broad.mit.edu 36 8 126058987 126058987 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152412 exon3 c.G1296A p.R432R . . . LONRF1 91694 broad.mit.edu 36 8 12627663 12627663 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152271 exon11 c.C2107T p.R703X . . . DLC1 10395 broad.mit.edu 36 8 13002306 13002306 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182643 exon9 c.C1911T p.F637F . . . FAM49B 51571 broad.mit.edu 36 8 130952814 130952814 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016623 exon7 c.G184A p.E62K . . . ADCY8 114 broad.mit.edu 36 8 131985308 131985308 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001115 exon7 c.C1803T p.I601I . . . PHF20L1 51105 broad.mit.edu 36 8 133924187 133924187 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016018 exon19 c.A2633G p.D878G . . . DLC1 10395 broad.mit.edu 36 8 13401795 13401795 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182643 exon2 c.G157T p.D53Y . . . TG 7038 broad.mit.edu 36 8 134049258 134049258 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003235 exon31 c.G5724A p.E1908E . . . KHDRBS3 10656 broad.mit.edu 36 8 136638960 136638960 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006558 exon5 c.C559T p.R187X . . . COL22A1 169044 broad.mit.edu 36 8 139797157 139797157 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152888 exon30 c.G2467T p.E823X . . . COL22A1 169044 broad.mit.edu 36 8 139914558 139914558 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152888 exon5 c.T751G p.L251V . . . PTK2 5747 broad.mit.edu 36 8 141781954 141781954 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001199649 exon25 c.C2264T p.A755V . . . FLJ43860 389690 broad.mit.edu 36 8 142545843 142545843 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207414 exon19 c.T2325G p.V775V . . . CYP11B2 1585 broad.mit.edu 36 8 143991860 143991860 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000498 exon6 c.C964A p.P322T . . . SGCZ 137868 broad.mit.edu 36 8 14456702 14456702 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139167 exon2 c.C144T p.C48C . . . ZNF623 9831 broad.mit.edu 36 8 144804775 144804775 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014789 exon1 c.G1590A p.G530G . . . CYC1 1537 broad.mit.edu 36 8 145223290 145223290 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001916 exon4 c.C516T p.F172F . . . ARHGAP39 80728 broad.mit.edu 36 8 145741864 145741864 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T T T T Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_025251 exon7 c.A2098G p.K700E . . . ZNF7 7553 broad.mit.edu 36 8 146038105 146038105 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003416 exon5 c.G809T p.R270I . . . ZNF16 7564 broad.mit.edu 36 8 146128664 146128664 + Missense_Mutation SNP C T T rs3735784 byCluster;byFrequency;byHapMap TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006958 exon3 c.G313A p.E105K . . . C8orf33 65265 broad.mit.edu 36 8 146249581 146249581 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023080 exon4 c.T498C p.Y166Y . . . FGF20 26281 broad.mit.edu 36 8 16895153 16895153 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019851 exon3 c.G435T p.E145D . . . ZDHHC2 51201 broad.mit.edu 36 8 17111886 17111886 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016353 exon9 c.C805T p.R269X . . . MTMR7 9108 broad.mit.edu 36 8 17204137 17204137 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004686 exon13 c.G1517A p.R506H . . . MTUS1 57509 broad.mit.edu 36 8 17555058 17555058 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001925 exon11 c.G3139T p.D1047Y . . . MTUS1 57509 broad.mit.edu 36 8 17599090 17599090 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020749 exon1 c.G77A p.R26Q . . . MTUS1 57509 broad.mit.edu 36 8 17656256 17656256 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001925 exon2 c.G1341A p.A447A . . . MTUS1 57509 broad.mit.edu 36 8 17656949 17656949 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001925 exon2 c.G648A p.T216T . . . FGL1 2267 broad.mit.edu 36 8 17770475 17770475 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004467 exon7 c.C641T p.S214F . . . PCM1 5108 broad.mit.edu 36 8 17840775 17840775 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006197 exon5 c.G589T p.E197X . . . PCM1 5108 broad.mit.edu 36 8 17861814 17861814 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006197 exon14 c.A2052C p.A684A . . . CSGALNACT1 55790 broad.mit.edu 36 8 19407272 19407272 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018371 exon4 c.C354T p.A118A . . . GFRA2 2675 broad.mit.edu 36 8 21606836 21606836 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165039 exon4 c.G587A p.G196E . . . BMP1 649 broad.mit.edu 36 8 22110715 22110715 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006129 exon15 c.C1944T p.F648F . . . PIWIL2 55124 broad.mit.edu 36 8 22192921 22192921 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018068 exon2 c.G77A p.G26D . . . SLC39A14 23516 broad.mit.edu 36 8 22331250 22331250 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135153 exon8 c.C1289T p.A430V . . . SORBS3 10174 broad.mit.edu 36 8 22477772 22477772 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005775 exon9 c.T707C p.V236A . . . LOXL2 4017 broad.mit.edu 36 8 23216783 23216783 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002318 exon11 c.C1953T p.G651G . . . ENTPD4 9583 broad.mit.edu 36 8 23355087 23355087 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004901 exon8 c.C822T p.G274G . . . STC1 6781 broad.mit.edu 36 8 23767907 23767907 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003155 exon1 c.C75T p.D25D . . . ADAM28 10863 broad.mit.edu 36 8 24246155 24246155 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021777 exon13 c.A1319G p.K440R . . . ADAMDEC1 27299 broad.mit.edu 36 8 24317545 24317545 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145272 exon12 c.A1168G p.T390A . . . ADAM7 8756 broad.mit.edu 36 8 24414261 24414261 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003817 exon19 c.C2071T p.R691C . . . ADAM7 8756 broad.mit.edu 36 8 24414900 24414900 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003817 exon20 c.G2129A p.G710E . . . ADAM7 8756 broad.mit.edu 36 8 24420912 24420912 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003817 exon21 c.C2238T p.I746I . . . CHRNA2 1135 broad.mit.edu 36 8 27377117 27377117 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000742 exon6 c.G760A p.D254N . . . C8orf80 389643 broad.mit.edu 36 8 27969421 27969421 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010906 exon10 c.A1186C p.I396L . . . C8orf80 389643 broad.mit.edu 36 8 27978089 27978089 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010906 exon7 c.C790T p.R264C . . . FZD3 7976 broad.mit.edu 36 8 28440706 28440706 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145866 exon4 c.A510C p.K170N . . . INTS9 55756 broad.mit.edu 36 8 28751211 28751211 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145159 exon4 c.C200T p.T67M . . . CSMD1 64478 broad.mit.edu 36 8 3007151 3007151 + Silent SNP G A A rs35444669 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon38 c.C5782T p.R1928W . . . CSMD1 64478 broad.mit.edu 36 8 3035041 3035041 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon34 c.T5199G p.C1733W . . . CSMD1 64478 broad.mit.edu 36 8 3059555 3059555 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon30 c.T4739G p.L1580R . . . TEX15 56154 broad.mit.edu 36 8 30823716 30823716 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031271 exon1 c.C2360T p.P787L . . . WRN 7486 broad.mit.edu 36 8 31124529 31124529 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000553 exon30 c.A3567C p.K1189N . . . CSMD1 64478 broad.mit.edu 36 8 3129257 3129257 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033225 exon26 c.C3970T p.R1324X . . . CSMD1 64478 broad.mit.edu 36 8 3193057 3193057 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon22 c.G3339T p.R1113S . . . CSMD1 64478 broad.mit.edu 36 8 3244383 3244383 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon16 c.C2343A p.F781L . . . FUT10 84750 broad.mit.edu 36 8 33366666 33366666 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032664 exon4 c.A569C p.E190A . . . UNC5D 137970 broad.mit.edu 36 8 35526472 35526472 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080872 exon2 c.G224C p.C75S . . . UNC5D 137970 broad.mit.edu 36 8 35660615 35660615 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080872 exon5 c.G579A p.W193X . . . UNC5D 137970 broad.mit.edu 36 8 35660707 35660707 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080872 exon5 c.C671T p.S224L . . . UNC5D 137970 broad.mit.edu 36 8 35663698 35663698 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080872 exon7 c.G1013T p.R338I . . . UNC5D 137970 broad.mit.edu 36 8 35767423 35767423 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080872 exon17 c.T2662G p.L888V . . . KCNU1 157855 broad.mit.edu 36 8 36761171 36761171 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031836 exon1 c.C85A p.L29I . . . ADRB3 155 broad.mit.edu 36 8 37942815 37942815 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000025 exon1 c.C330T p.C110C . . . WHSC1L1 54904 broad.mit.edu 36 8 38281985 38281985 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023034 exon13 c.G2378A p.R793H . . . FGFR1 2260 broad.mit.edu 36 8 38392719 38392719 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001174065 exon13 c.C1674T p.I558I . . . FGFR1 2260 broad.mit.edu 36 8 38395044 38395044 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174065 exon10 c.C1283T p.S428F . . . FGFR1 2260 broad.mit.edu 36 8 38405021 38405021 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174066 exon3 c.C181T p.P61S . . . IDO1 3620 broad.mit.edu 36 8 39899253 39899253 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002164 exon6 c.C463T p.R155C . . . IDO1 3620 broad.mit.edu 36 8 39901432 39901432 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002164 exon8 c.C691T p.R231C . . . ANK1 286 broad.mit.edu 36 8 41664871 41664871 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020475 exon35 c.G4218A p.K1406K . . . ANK1 286 broad.mit.edu 36 8 41696357 41696357 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020475 exon10 c.C1086A p.A362A . . . PLAT 5327 broad.mit.edu 36 8 42157278 42157278 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033011 exon9 c.G834A p.W278X . . . DKK4 27121 broad.mit.edu 36 8 42350809 42350809 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014420 exon4 c.G641A p.R214Q . . . CHRNB3 1142 broad.mit.edu 36 8 42706196 42706196 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000749 exon5 c.G589A p.D197N . . . HGSNAT 138050 broad.mit.edu 36 8 43152394 43152394 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152419 exon10 c.C872A p.S291Y . . . KIAA0146 23514 broad.mit.edu 36 8 48748943 48748943 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080394 exon11 c.T1572G p.C524W . . . PRKDC 5591 broad.mit.edu 36 8 48924585 48924585 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081640 exon53 c.G7037A p.R2346Q . . . PRKDC 5591 broad.mit.edu 36 8 48957071 48957071 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081640 exon37 c.C4916T p.S1639L . . . PRKDC 5591 broad.mit.edu 36 8 48973584 48973584 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081640 exon29 c.C3463T p.R1155X . . . PRKDC 5591 broad.mit.edu 36 8 49009202 49009202 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081640 exon15 c.G1499A p.G500D PRKDC,skin,NS,Substitution - Missense,-1 . . ST18 9705 broad.mit.edu 36 8 53211769 53211769 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014682 exon19 c.T2234C p.V745A . . . ST18 9705 broad.mit.edu 36 8 53247682 53247682 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014682 exon10 c.A292C p.K98Q . . . OPRK1 4986 broad.mit.edu 36 8 54325900 54325900 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000912 exon2 c.T251C p.I84T . . . RP1 6101 broad.mit.edu 36 8 55700213 55700213 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006269 exon4 c.G1218T p.E406D . . . RP1 6101 broad.mit.edu 36 8 55700854 55700854 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006269 exon4 c.C1859A p.S620Y . . . RP1 6101 broad.mit.edu 36 8 55705063 55705063 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006269 exon4 c.A6068C p.K2023T . . . RP1 6101 broad.mit.edu 36 8 55705455 55705455 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006269 exon4 c.G6460A p.E2154K . . . XKR4 114786 broad.mit.edu 36 8 56598656 56598656 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052898 exon3 c.C1269A p.F423L . . . LYN 4067 broad.mit.edu 36 8 57027207 57027207 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002350 exon7 c.G616A p.D206N . . . CA8 767 broad.mit.edu 36 8 61297790 61297790 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004056 exon7 c.G710A p.R237Q . . . CHD7 55636 broad.mit.edu 36 8 61931143 61931143 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017780 exon33 c.A6992G p.K2331R . . . MCPH1 79648 broad.mit.edu 36 8 6283950 6283950 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024596 exon6 c.A505C p.N169H . . . NKAIN3 286183 broad.mit.edu 36 8 63664833 63664833 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173688 exon3 c.G199C p.V67L . . . YTHDF3 253943 broad.mit.edu 36 8 64250463 64250463 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152758 exon3 c.G69A p.S23S . . . DNAJC5B 85479 broad.mit.edu 36 8 67174788 67174788 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033105 exon6 c.G568T p.E190X . . . CSPP1 79848 broad.mit.edu 36 8 68212248 68212248 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024790 exon15 c.C1816T p.R606W . . . CSPP1 79848 broad.mit.edu 36 8 68233807 68233807 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024790 exon19 c.C2404T p.R802W . . . ARFGEF1 10565 broad.mit.edu 36 8 68279534 68279534 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006421 exon35 c.G4894A p.D1632N . . . ARFGEF1 10565 broad.mit.edu 36 8 68374081 68374081 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006421 exon4 c.T376A p.L126I . . . C8orf34 116328 broad.mit.edu 36 8 69783830 69783830 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052958 exon9 c.T1289G p.I430R . . . SULF1 23213 broad.mit.edu 36 8 70661256 70661256 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128205 exon7 c.C523T p.R175C . . . NCOA2 10499 broad.mit.edu 36 8 71203296 71203296 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006540 exon18 c.C3607T p.R1203C . . . NCOA2 10499 broad.mit.edu 36 8 71223192 71223192 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006540 exon12 c.G2475A p.T825T . . . TRAM1 23471 broad.mit.edu 36 8 71658042 71658042 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014294 exon10 c.G962A p.R321Q . . . EYA1 2138 broad.mit.edu 36 8 72344605 72344605 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172060 exon9 c.T875C p.F292S . . . TRPA1 8989 broad.mit.edu 36 8 73127543 73127543 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007332 exon14 c.T1656C p.L552L . . . KCNB2 9312 broad.mit.edu 36 8 74012643 74012643 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004770 exon3 c.C2499T p.C833C . . . RPL7 6129 broad.mit.edu 36 8 74367526 74367526 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000971 exon2 c.C75T p.F25F . . . STAU2 27067 broad.mit.edu 36 8 74688736 74688736 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164383 exon4 c.G172A p.E58K . . . HNF4G 3174 broad.mit.edu 36 8 76626274 76626274 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_004133 exon4 c.G449A p.R150Q . . . ZFHX4 79776 broad.mit.edu 36 8 77853196 77853196 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024721 exon4 c.C3291A p.I1097I . . . IL7 3574 broad.mit.edu 36 8 79814829 79814829 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199887 exon3 c.T191G p.F64C . . . IMPA1 3612 broad.mit.edu 36 8 82745783 82745783 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005536 exon7 c.C512A p.T171N . . . PSKH2 85481 broad.mit.edu 36 8 87129939 87129939 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033126 exon3 c.G1026A p.Q342Q . . . SLC7A13 157724 broad.mit.edu 36 8 87311401 87311401 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138817 exon1 c.C222T p.F74F . . . CNBD1 168975 broad.mit.edu 36 8 88287468 88287468 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173538 exon5 c.T563C p.L188S . . . CNBD1 168975 broad.mit.edu 36 8 88366075 88366075 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173538 exon7 c.G825A p.S275S . . . PPP1R3B 79660 broad.mit.edu 36 8 9036377 9036377 + Silent SNP G A A rs17854302 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024607 exon2 c.C195T p.F65F . . . RBM12B 389677 broad.mit.edu 36 8 94816599 94816599 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203390 exon3 c.A1216C p.N406H . . . TMEM67 91147 broad.mit.edu 36 8 94869250 94869250 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153704 exon14 c.T1415C p.V472A . . . TMEM67 91147 broad.mit.edu 36 8 94878546 94878546 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153704 exon19 c.A1869C p.Q623H . . . GEM 2669 broad.mit.edu 36 8 95331786 95331786 + Silent SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181702 exon5 c.C819A p.I273I . . . GEM 2669 broad.mit.edu 36 8 95333522 95333522 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181702 exon4 c.C514T p.R172X . . . KIAA1429 25962 broad.mit.edu 36 8 95608300 95608300 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015496 exon8 c.G1348A p.A450T . . . KIAA1429 25962 broad.mit.edu 36 8 95612475 95612475 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015496 exon6 c.G499T p.E167X . . . INTS8 55656 broad.mit.edu 36 8 95918021 95918021 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017864 exon7 c.G847T p.E283X . . . INTS8 55656 broad.mit.edu 36 8 95933065 95933065 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017864 exon13 c.G1616A p.R539H . . . UQCRB 7381 broad.mit.edu 36 8 97313336 97313336 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006294 exon3 c.C100T p.R34X . . . MTERFD1 51001 broad.mit.edu 36 8 97325445 97325445 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015942 exon7 c.C937T p.Q313X . . . PGCP 10404 broad.mit.edu 36 8 98224458 98224458 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016134 exon8 c.C1290A p.F430L . . . MATN2 4147 broad.mit.edu 36 8 99012739 99012739 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030583 exon3 c.C525A p.D175E . . . ZMYND19 116225 broad.mit.edu 36 9 139601362 139601363 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_138462 exon4 c.237_238insG p.G79fs . . . TBC1D2 55357 broad.mit.edu 36 9 100031176 100031176 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018421 exon5 c.G857A p.R286H . . . GABBR2 9568 broad.mit.edu 36 9 100190990 100190990 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005458 exon10 c.T1496G p.F499C . . . INVS 27130 broad.mit.edu 36 9 102042313 102042313 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183245 exon6 c.C766T p.R256X . . . CYLC2 1539 broad.mit.edu 36 9 104805343 104805343 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001340 exon3 c.C157T p.Q53X . . . OR13C8 138802 broad.mit.edu 36 9 106372161 106372161 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004483 exon1 c.C892A p.L298M . . . OR13C9 286362 broad.mit.edu 36 9 106420234 106420234 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001956 exon1 c.T73C p.L25L . . . ABCA1 19 broad.mit.edu 36 9 106587568 106587568 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005502 exon49 c.G6575A p.S2192N . . . ABCA1 19 broad.mit.edu 36 9 106595347 106595347 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005502 exon41 c.C5562T p.F1854F . . . ABCA1 19 broad.mit.edu 36 9 106639597 106639597 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005502 exon10 c.A1127G p.K376R . . . SLC44A1 23446 broad.mit.edu 36 9 107158352 107158352 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080546 exon6 c.A539G p.N180S . . . SLC44A1 23446 broad.mit.edu 36 9 107167701 107167701 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080546 exon11 c.G1370A p.R457Q . . . SLC44A1 23446 broad.mit.edu 36 9 107187601 107187601 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080546 exon15 c.G1947A p.P649P . . . ZNF462 58499 broad.mit.edu 36 9 108737612 108737612 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021224 exon6 c.C6124T p.R2042C . . . IKBKAP 8518 broad.mit.edu 36 9 110699106 110699106 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003640 exon24 c.G2535A p.K845K . . . IKBKAP 8518 broad.mit.edu 36 9 110702425 110702425 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003640 exon19 c.G2066A p.R689Q . . . EPB41L4B 54566 broad.mit.edu 36 9 111058502 111058502 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018424 exon8 c.G832A p.V278I . . . PTPN3 5774 broad.mit.edu 36 9 111222634 111222634 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002829 exon14 c.G1204T p.E402X . . . KIAA0368 23392 broad.mit.edu 36 9 113185322 113185322 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080398 exon36 c.C4327T p.R1443X . . . KIAA0368 23392 broad.mit.edu 36 9 113232715 113232715 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080398 exon10 c.A1397C p.N466T . . . ZNF483 158399 broad.mit.edu 36 9 113329797 113329797 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007169 exon2 c.C301A p.L101M . . . C9orf84 158401 broad.mit.edu 36 9 113558440 113558440 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173521 exon6 c.A656C p.K219T . . . ZNF618 114991 broad.mit.edu 36 9 115818862 115818862 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133374 exon10 c.A785G p.H262R . . . ZNF618 114991 broad.mit.edu 36 9 115850858 115850858 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133374 exon14 c.C1176T p.S392S . . . AKNA 80709 broad.mit.edu 36 9 116152964 116152964 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030767 exon15 c.C3217T p.R1073X . . . TNFSF15 9966 broad.mit.edu 36 9 116592878 116592878 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005118 exon4 c.C431T p.S144L . . . PAPPA 5069 broad.mit.edu 36 9 118037355 118037355 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002581 exon7 c.G2350A p.E784K . . . TLR4 7099 broad.mit.edu 36 9 119514814 119514814 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138554 exon3 c.G587A p.R196Q . . . TLR4 7099 broad.mit.edu 36 9 119515481 119515481 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138554 exon3 c.C1254A p.F418L . . . MEGF9 1955 broad.mit.edu 36 9 122424804 122424804 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080497 exon3 c.G854A p.R285Q . . . TRAF1 7185 broad.mit.edu 36 9 122725823 122725823 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190945 exon4 c.G209A p.R70H . . . PTGS1 5742 broad.mit.edu 36 9 124180062 124180062 + Missense_Mutation SNP G A A rs3842789 byCluster;byFrequency;byHapMap TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000962 exon3 c.G158A p.R53H . . . OR1J4 26219 broad.mit.edu 36 9 124322148 124322148 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004452 exon1 c.G908T p.R303I . . . OR1L1 26737 broad.mit.edu 36 9 124464448 124464448 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005236 exon1 c.T633G p.F211L . . . DENND1A 57706 broad.mit.edu 36 9 125385299 125385299 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024820 exon12 c.C837T p.F279F . . . LHX2 9355 broad.mit.edu 36 9 125834786 125834786 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004789 exon5 c.G1200A p.T400T . . . GOLGA1 2800 broad.mit.edu 36 9 126691609 126691609 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002077 exon17 c.G1525A p.E509K . . . SCAI 286205 broad.mit.edu 36 9 126755046 126755046 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173690 exon19 c.G1751A p.R584Q . . . RALGPS1 9649 broad.mit.edu 36 9 128871339 128871339 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014636 exon8 c.C493T p.R165X . . . DNM1 1759 broad.mit.edu 36 9 130026398 130026398 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005336 exon10 c.A1244C p.K415T . . . SPTAN1 6709 broad.mit.edu 36 9 130428615 130428615 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195532 exon47 c.G6329A p.R2110H . . . ZER1 10444 broad.mit.edu 36 9 130553547 130553547 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006336 exon6 c.C1004T p.S335F . . . NUP188 23511 broad.mit.edu 36 9 130803818 130803818 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015354 exon35 c.C4033T p.R1345C . . . MPDZ 8777 broad.mit.edu 36 9 13176340 13176340 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003829 exon17 c.C2410A p.L804I . . . MPDZ 8777 broad.mit.edu 36 9 13178956 13178956 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003829 exon16 c.C2191T p.R731C . . . FIBCD1 84929 broad.mit.edu 36 9 132769480 132769480 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145106 exon8 c.A1178G p.D393G . . . BAT2L1 84726 broad.mit.edu 36 9 133357454 133357454 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013318 exon29 c.G6459A p.S2153S . . . SETX 23064 broad.mit.edu 36 9 134163452 134163452 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015046 exon13 c.G5617A p.E1873K . . . SETX 23064 broad.mit.edu 36 9 134196531 134196531 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015046 exon8 c.G964A p.A322T . . . TTF1 7270 broad.mit.edu 36 9 134244319 134244319 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007344 exon10 c.T2412C p.F804F . . . TSC1 7248 broad.mit.edu 36 9 134762537 134762537 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162426 exon22 c.G2827A p.A943T . . . COL5A1 1289 broad.mit.edu 36 9 136861667 136861667 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000093 exon64 c.G5092T p.E1698X . . . FCN1 2219 broad.mit.edu 36 9 136941706 136941706 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002003 exon9 c.C740A p.S247Y . . . FCN1 2219 broad.mit.edu 36 9 136946074 136946074 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002003 exon4 c.G285T p.E95D . . . LCN9 392399 broad.mit.edu 36 9 137695883 137695883 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001676 exon2 c.A151G p.K51E . . . KCNT1 57582 broad.mit.edu 36 9 137786791 137786791 + Silent SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020822 exon6 c.T495G p.A165A . . . CAMSAP1 157922 broad.mit.edu 36 9 137882052 137882052 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015447 exon6 c.A885C p.E295D . . . SNAPC4 6621 broad.mit.edu 36 9 138409969 138409969 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003086 exon3 c.A252C p.E84D . . . SEC16A 9919 broad.mit.edu 36 9 138467728 138467728 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014866 exon22 c.A6132C p.E2044D . . . SEC16A 9919 broad.mit.edu 36 9 138489339 138489339 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014866 exon3 c.G2550A p.S850S . . . C9orf37 85026 broad.mit.edu 36 9 139630302 139630302 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032937 exon3 c.C171T p.F57F . . . CACNA1B 774 broad.mit.edu 36 9 140021085 140021085 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000718 exon16 c.G2020A p.E674K . . . NFIB 4781 broad.mit.edu 36 9 14140223 14140223 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190738 exon5 c.G805T p.E269X . . . FREM1 158326 broad.mit.edu 36 9 14766044 14766044 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144966 exon26 c.G4600A p.D1534N . . . PSIP1 11168 broad.mit.edu 36 9 15455536 15455536 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128217 exon16 c.T1575G p.D525E . . . C9orf93 203238 broad.mit.edu 36 9 15581451 15581451 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173550 exon5 c.G440T p.R147I . . . BNC2 54796 broad.mit.edu 36 9 16409065 16409065 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017637 exon7 c.T3222G p.F1074L . . . BNC2 54796 broad.mit.edu 36 9 16427090 16427090 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017637 exon6 c.G1102A p.E368K . . . ADAMTSL1 92949 broad.mit.edu 36 9 18625985 18625985 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052866 exon6 c.C646T p.R216C . . . HAUS6 54801 broad.mit.edu 36 9 19048131 19048131 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017645 exon16 c.G2634A p.T878T . . . HAUS6 54801 broad.mit.edu 36 9 19048868 19048868 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017645 exon16 c.G1897T p.E633X . . . DENND4C 55667 broad.mit.edu 36 9 19336106 19336106 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017925 exon18 c.G2484A p.S828S . . . IFNE 338376 broad.mit.edu 36 9 21471404 21471404 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176891 exon1 c.C290A p.S97Y . . . SMARCA2 6595 broad.mit.edu 36 9 2172150 2172150 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139045 exon30 c.C4315T p.R1439C . . . ELAVL2 1993 broad.mit.edu 36 9 23694920 23694920 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171197 exon4 c.C483T p.V161V . . . TEK 7010 broad.mit.edu 36 9 27218260 27218260 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000459 exon22 c.C3257T p.A1086V . . . RFX3 5991 broad.mit.edu 36 9 3253051 3253051 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_134428 exon14 c.C1489T p.R497X . . . TOPORS 10210 broad.mit.edu 36 9 32532101 32532101 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195622 exon2 c.G2227A p.E743K . . . TOPORS 10210 broad.mit.edu 36 9 32533329 32533329 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195622 exon2 c.G999A p.E333E . . . TOPORS 10210 broad.mit.edu 36 9 32533744 32533744 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195622 exon2 c.G584A p.R195Q . . . DOCK8 81704 broad.mit.edu 36 9 329015 329015 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190458 exon12 c.C1228T p.R410C . . . DCAF12 25853 broad.mit.edu 36 9 34088342 34088342 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015397 exon5 c.G775A p.A259T . . . CNTFR 1271 broad.mit.edu 36 9 34546288 34546288 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147164 exon7 c.C733T p.R245C . . . C9orf131 138724 broad.mit.edu 36 9 35035333 35035333 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040411 exon2 c.C2488T p.P830S . . . VCP 7415 broad.mit.edu 36 9 35052005 35052005 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007126 exon9 c.G1076A p.R359Q . . . PIGO 84720 broad.mit.edu 36 9 35081815 35081815 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032634 exon7 c.G2069A p.R690H . . . TPM2 7169 broad.mit.edu 36 9 35675107 35675107 + Missense_Mutation SNP C T T rs1059780 byFrequency TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213674 exon6 c.G593A p.R198Q . . . TLN1 7094 broad.mit.edu 36 9 35689366 35689366 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006289 exon51 c.T6861C p.A2287A . . . RGP1 9827 broad.mit.edu 36 9 35739852 35739852 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080496 exon2 c.G100A p.A34T . . . C9orf128 392307 broad.mit.edu 36 9 35815363 35815363 + Silent SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012446 exon3 c.A606C p.T202T . . . ZCCHC7 84186 broad.mit.edu 36 9 37116348 37116348 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032226 exon2 c.G19A p.E7K . . . POLR1E 64425 broad.mit.edu 36 9 37491715 37491715 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022490 exon11 c.G974A p.R325Q . . . CNTNAP3 79937 broad.mit.edu 36 9 39166055 39166055 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033655 exon7 c.C962T p.S321L . . . GLIS3 169792 broad.mit.edu 36 9 3927084 3927084 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152629 exon4 c.A1351C p.K451Q . . . ZNF658 26149 broad.mit.edu 36 9 40763183 40763183 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033160 exon5 c.A2092C p.N698H . . . SLC1A1 6505 broad.mit.edu 36 9 4534619 4534619 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004170 exon2 c.G144A p.E48E . . . JAK2 3717 broad.mit.edu 36 9 5045687 5045687 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004972 exon8 c.G955A p.D319N . . . JAK2 3717 broad.mit.edu 36 9 5062613 5062613 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004972 exon13 c.G1763T p.R588I . . . CD274 29126 broad.mit.edu 36 9 5447399 5447399 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014143 exon3 c.C373T p.R125X . . . KIAA1432 57589 broad.mit.edu 36 9 5762740 5762740 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020829 exon23 c.C3556T p.R1186W . . . ERMP1 79956 broad.mit.edu 36 9 5820851 5820851 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024896 exon2 c.C516A p.F172L . . . KIAA2026 158358 broad.mit.edu 36 9 5910513 5910513 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017969 exon8 c.C5483A p.S1828Y . . . KIAA2026 158358 broad.mit.edu 36 9 5910717 5910717 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017969 exon8 c.A5279G p.N1760S . . . KIAA2026 158358 broad.mit.edu 36 9 5914739 5914739 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017969 exon7 c.G2605T p.D869Y . . . KIAA2026 158358 broad.mit.edu 36 9 5959252 5959252 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017969 exon3 c.G979A p.E327K . . . KDM4C 23081 broad.mit.edu 36 9 6804685 6804685 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146696 exon4 c.G441T p.K147N . . . KANK1 23189 broad.mit.edu 36 9 702347 702347 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153186 exon2 c.C1107T p.V369V . . . PGM5 5239 broad.mit.edu 36 9 70284205 70284205 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021965 exon8 c.T1211C p.L404P . . . KANK1 23189 broad.mit.edu 36 9 703322 703322 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153186 exon2 c.C2082T p.F694F . . . APBA1 320 broad.mit.edu 36 9 71245843 71245843 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163 exon11 c.G2190T p.K730N . . . SMC5 23137 broad.mit.edu 36 9 72087282 72087282 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015110 exon7 c.A944G p.N315S . . . TRPM3 80036 broad.mit.edu 36 9 72403292 72403292 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007471 exon20 c.C2875T p.R959C . . . TMEM2 23670 broad.mit.edu 36 9 73534956 73534956 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013390 exon9 c.C1807A p.H603N . . . TMC1 117531 broad.mit.edu 36 9 74593918 74593918 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138691 exon15 c.C1089A p.F363L . . . VPS13A 23230 broad.mit.edu 36 9 79126414 79126414 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018037 exon43 c.G5645A p.R1882Q . . . VPS13A 23230 broad.mit.edu 36 9 79142057 79142057 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018037 exon46 c.G6045T p.E2015D . . . CEP78 84131 broad.mit.edu 36 9 80056697 80056697 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098802 exon9 c.G1126T p.E376X . . . CEP78 84131 broad.mit.edu 36 9 80069002 80069002 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098802 exon13 c.G1578T p.E526D . . . PTPRD 5789 broad.mit.edu 36 9 8474375 8474375 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040712 exon13 c.C1915A p.L639I . . . UBQLN1 29979 broad.mit.edu 36 9 85490783 85490783 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_053067 exon2 c.T288C p.I96I . . . RMI1 80010 broad.mit.edu 36 9 85805794 85805794 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024945 exon3 c.A73G p.M25V . . . RMI1 80010 broad.mit.edu 36 9 85806659 85806659 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024945 exon3 c.A938C p.D313A . . . RMI1 80010 broad.mit.edu 36 9 85807146 85807146 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024945 exon3 c.G1425T p.E475D . . . SLC28A3 64078 broad.mit.edu 36 9 86094896 86094896 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022127 exon12 c.C1142A p.S381Y . . . NTRK2 4915 broad.mit.edu 36 9 86475639 86475639 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018066 exon2 c.C156T p.I52I . . . PTPRD 5789 broad.mit.edu 36 9 8723794 8723794 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040712 exon1 c.G50A p.R17H . . . DAPK1 1612 broad.mit.edu 36 9 89473405 89473405 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004938 exon19 c.G1997A p.R666Q . . . CDK20 23552 broad.mit.edu 36 9 89778764 89778764 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170640 exon2 c.G82A p.E28K . . . LOC286238 286238 broad.mit.edu 36 9 90456740 90456740 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100111 exon1 c.C23A p.S8Y . . . SPTLC1 10558 broad.mit.edu 36 9 93861282 93861282 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006415 exon7 c.G690T p.K230N . . . OGN 4969 broad.mit.edu 36 9 94192143 94192143 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014057 exon5 c.C444T p.L148L . . . FANCC 2176 broad.mit.edu 36 9 96903823 96903823 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000136 exon15 c.G1664A p.R555Q . . . C9orf102 375748 broad.mit.edu 36 9 97683215 97683215 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010895 exon2 c.G323A p.R108Q . . . HSD17B3 3293 broad.mit.edu 36 9 98046446 98046446 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000197 exon9 c.G658T p.E220X . . . CDC14B 8555 broad.mit.edu 36 9 98367535 98367535 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077181 exon2 c.T101C p.V34A . . . C9orf21 195827 broad.mit.edu 36 9 98453544 98453544 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153698 exon4 c.G370T p.E124X . . . ZNF510 22869 broad.mit.edu 36 9 98561158 98561158 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014930 exon6 c.G1775T p.R592I . . . LOC57653 57653 broad.mit.edu 36 9 99176695 99176695 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020893 exon35 c.C4782T p.L1594L . . . CHRDL1 91851 broad.mit.edu 36 X 109922054 109922055 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143982 exon2 c.12_13insA p.K4fs . . . HMGN5 79366 broad.mit.edu 36 X 80257279 80257280 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 - - - G - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030763 exon7 c.374_375insC p.N125fs . . . DRP2 1821 broad.mit.edu 36 X 100377548 100377548 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001939 exon4 c.C161A p.A54D . . . GLA 2717 broad.mit.edu 36 X 100540115 100540115 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000169 exon6 c.C898T p.L300F . . . GLA 2717 broad.mit.edu 36 X 100545510 100545510 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000169 exon2 c.G314A p.R105K . . . ARMCX1 51309 broad.mit.edu 36 X 100695684 100695684 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016608 exon4 c.A1115C p.E372A . . . ARMCX3 51566 broad.mit.edu 36 X 100767099 100767099 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177948 exon5 c.T474C p.I158I . . . ARMCX2 9823 broad.mit.edu 36 X 100798072 100798072 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177949 exon6 c.G1159A p.D387N . . . ZMAT1 84460 broad.mit.edu 36 X 101025841 101025841 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011657 exon7 c.C1214T p.A405V . . . CLCN4 1183 broad.mit.edu 36 X 10136427 10136427 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001830 exon9 c.G1186A p.E396K . . . GPRASP1 9737 broad.mit.edu 36 X 101798243 101798243 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099411 exon3 c.G2746T p.E916X . . . GPRASP1 9737 broad.mit.edu 36 X 101798916 101798916 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099411 exon3 c.C3419T p.S1140L . . . GPRASP1 9737 broad.mit.edu 36 X 101799246 101799246 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099411 exon3 c.A3749G p.D1250G . . . BEX1 55859 broad.mit.edu 36 X 102204695 102204695 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018476 exon3 c.T164C p.V55A . . . WBP5 51186 broad.mit.edu 36 X 102499555 102499555 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006612 exon3 c.G287A p.R96Q . . . TEX13A 56157 broad.mit.edu 36 X 104350838 104350838 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031274 exon3 c.G696A p.G232G . . . IL1RAPL2 26280 broad.mit.edu 36 X 104885963 104885963 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017416 exon10 c.C1329A p.L443L . . . NRK 203447 broad.mit.edu 36 X 105026168 105026168 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198465 exon7 c.A576C p.K192N . . . MUM1L1 139221 broad.mit.edu 36 X 105336680 105336680 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152423 exon5 c.C599T p.S200L . . . CXorf57 55086 broad.mit.edu 36 X 105742360 105742360 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018015 exon1 c.T394C p.S132P . . . CXorf57 55086 broad.mit.edu 36 X 105742482 105742482 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018015 exon1 c.G516A p.A172A . . . CXorf57 55086 broad.mit.edu 36 X 105769485 105769485 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018015 exon9 c.G1646A p.R549H . . . TBC1D8B 54885 broad.mit.edu 36 X 105995901 105995901 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017752 exon16 c.G2644T p.E882X . . . TSC22D3 1831 broad.mit.edu 36 X 106845796 106845796 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004089 exon2 c.G163A p.E55K . . . COL4A6 1288 broad.mit.edu 36 X 107289550 107289550 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033641 exon44 c.G4610A p.R1537H . . . COL4A6 1288 broad.mit.edu 36 X 107305661 107305661 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033641 exon29 c.C2709T p.F903F . . . COL4A6 1288 broad.mit.edu 36 X 107309238 107309238 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033641 exon26 c.C2218T p.P740S . . . COL4A6 1288 broad.mit.edu 36 X 107317856 107317856 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033641 exon22 c.C1645A p.L549I . . . COL4A5 1287 broad.mit.edu 36 X 107756198 107756198 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000495 exon36 c.T3209G p.I1070S . . . COL4A5 1287 broad.mit.edu 36 X 107798345 107798345 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000495 exon41 c.G3745T p.G1249X . . . GUCY2F 2986 broad.mit.edu 36 X 108528516 108528516 + Silent SNP T A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001522 exon11 c.A2193T p.G731G . . . GUCY2F 2986 broad.mit.edu 36 X 108583694 108583694 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001522 exon4 c.A1083C p.Q361H . . . ACSL4 2182 broad.mit.edu 36 X 108813282 108813282 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022977 exon4 c.G90A p.W30X . . . TMEM164 84187 broad.mit.edu 36 X 109303135 109303135 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032227 exon7 c.G694A p.E232K . . . DCX 1641 broad.mit.edu 36 X 110530959 110530959 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178153 exon3 c.T620G p.F207C . . . ZCCHC16 340595 broad.mit.edu 36 X 111585339 111585339 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004308 exon3 c.G727T p.A243S . . . LRCH2 57631 broad.mit.edu 36 X 114306704 114306704 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020871 exon8 c.G1154T p.R385I . . . LRCH2 57631 broad.mit.edu 36 X 114320475 114320475 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020871 exon4 c.T717G p.V239V . . . PLS3 5358 broad.mit.edu 36 X 114785675 114785675 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005032 exon11 c.C1262T p.A421V . . . SLC6A14 11254 broad.mit.edu 36 X 115504113 115504113 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007231 exon14 c.A1893C p.E631D . . . KLHL13 90293 broad.mit.edu 36 X 116963465 116963465 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168300 exon2 c.G182A p.R61H . . . KIAA1210 57481 broad.mit.edu 36 X 118105297 118105297 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020721 exon11 c.A3924C p.Q1308H . . . SLC25A43 203427 broad.mit.edu 36 X 118470905 118470905 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145305 exon5 c.G875T p.R292I . . . SLC25A5 292 broad.mit.edu 36 X 118488913 118488913 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001152 exon4 c.C761T p.T254M . . . UBE2A 7319 broad.mit.edu 36 X 118599523 118599523 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003336 exon4 c.C177A p.F59L . . . SEPT6 23157 broad.mit.edu 36 X 118681613 118681613 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145799 exon3 c.C201T p.F67F . . . RPL39 6170 broad.mit.edu 36 X 118807945 118807945 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001000 exon2 c.C61T p.R21C . . . CUL4B 8450 broad.mit.edu 36 X 119550310 119550310 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079872 exon18 c.G2434T p.E812X . . . CUL4B 8450 broad.mit.edu 36 X 119562395 119562395 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079872 exon6 c.G1052A p.R351Q . . . THOC2 57187 broad.mit.edu 36 X 122600502 122600502 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081550 exon17 c.A1804C p.K602Q . . . THOC2 57187 broad.mit.edu 36 X 122606339 122606339 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081550 exon14 c.A1531C p.M511L . . . THOC2 57187 broad.mit.edu 36 X 122606883 122606883 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001081550 exon13 c.G1411T p.E471X . . . THOC2 57187 broad.mit.edu 36 X 122627284 122627284 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081550 exon12 c.G1276T p.D426Y . . . STAG2 10735 broad.mit.edu 36 X 123019485 123019485 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042750 exon15 c.G1393T p.V465F . . . ODZ1 10178 broad.mit.edu 36 X 123414907 123414907 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014253 exon22 c.A4044G p.T1348T . . . ODZ1 10178 broad.mit.edu 36 X 123443413 123443413 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014253 exon21 c.G3778T p.V1260F . . . ODZ1 10178 broad.mit.edu 36 X 123855867 123855867 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014253 exon3 c.C494T p.P165L . . . DCAF12L2 340578 broad.mit.edu 36 X 125126221 125126221 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013628 exon1 c.G1368A p.G456G . . . DCAF12L1 139170 broad.mit.edu 36 X 125513918 125513918 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178470 exon1 c.A355G p.T119A . . . ACTRT1 139741 broad.mit.edu 36 X 127013708 127013708 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138289 exon1 c.G159A p.Q53Q . . . OCRL 4952 broad.mit.edu 36 X 128530954 128530954 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001587 exon15 c.G1499A p.R500Q . . . OCRL 4952 broad.mit.edu 36 X 128549921 128549921 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001587 exon20 c.C2317T p.P773S . . . XPNPEP2 7512 broad.mit.edu 36 X 128712209 128712209 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003399 exon8 c.C722T p.A241V . . . XPNPEP2 7512 broad.mit.edu 36 X 128729322 128729322 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003399 exon20 c.C1803T p.I601I . . . UTP14A 10813 broad.mit.edu 36 X 128872799 128872799 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006649 exon5 c.A373T p.I125F . . . UTP14A 10813 broad.mit.edu 36 X 128887634 128887634 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006649 exon13 c.A1808T p.D603V . . . AIFM1 9131 broad.mit.edu 36 X 129100277 129100277 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145812 exon9 c.C927T p.S309S . . . FAM9C 171484 broad.mit.edu 36 X 12968829 12968829 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174901 exon5 c.A298G p.K100E . . . IGSF1 3547 broad.mit.edu 36 X 130237381 130237381 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170962 exon15 c.C2909A p.S970Y . . . USP26 83844 broad.mit.edu 36 X 131989188 131989188 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031907 exon1 c.G727A p.A243T . . . USP26 83844 broad.mit.edu 36 X 131989529 131989529 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031907 exon1 c.A386C p.K129T . . . GPC4 2239 broad.mit.edu 36 X 132266520 132266520 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001448 exon7 c.G1191T p.K397N . . . GPC4 2239 broad.mit.edu 36 X 132301029 132301029 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001448 exon2 c.A167G p.H56R . . . GPC3 2719 broad.mit.edu 36 X 132715561 132715561 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164618 exon3 c.A598G p.M200V . . . CCDC160 347475 broad.mit.edu 36 X 133206962 133206962 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101357 exon2 c.G466T p.E156X . . . CCDC160 347475 broad.mit.edu 36 X 133207025 133207025 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101357 exon2 c.C529T p.H177Y . . . CCDC160 347475 broad.mit.edu 36 X 133207280 133207280 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101357 exon2 c.G784T p.E262X . . . MOSPD1 56180 broad.mit.edu 36 X 133858707 133858707 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019556 exon4 c.G254A p.R85Q . . . ZNF75D 7626 broad.mit.edu 36 X 134249435 134249435 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007131 exon6 c.T833A p.L278Q . . . DDX26B 203522 broad.mit.edu 36 X 134538945 134538945 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182540 exon14 c.C1935T p.G645G . . . MAP7D3 79649 broad.mit.edu 36 X 135156082 135156082 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173517 exon2 c.C155T p.S52L . . . BRS3 680 broad.mit.edu 36 X 135400213 135400213 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001727 exon2 c.C690T p.L230L . . . CD40LG 959 broad.mit.edu 36 X 135558080 135558080 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000074 exon1 c.G7A p.E3K . . . CD40LG 959 broad.mit.edu 36 X 135566237 135566237 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000074 exon4 c.A403G p.T135A . . . ARHGEF6 9459 broad.mit.edu 36 X 135591751 135591751 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004840 exon14 c.G1522T p.E508X . . . ARHGEF6 9459 broad.mit.edu 36 X 135641942 135641942 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004840 exon6 c.G717T p.K239N . . . ARHGEF6 9459 broad.mit.edu 36 X 135653473 135653473 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004840 exon5 c.G598A p.G200S . . . TCEANC 170082 broad.mit.edu 36 X 13591205 13591205 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152634 exon4 c.A747C p.K249N . . . F9 2158 broad.mit.edu 36 X 138471372 138471372 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000133 exon8 c.G862T p.E288X . . . ATP11C 286410 broad.mit.edu 36 X 138695081 138695081 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010986 exon16 c.C1645T p.R549C . . . ATP11C 286410 broad.mit.edu 36 X 138724710 138724710 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010986 exon5 c.A428G p.K143R . . . CXorf66 347487 broad.mit.edu 36 X 138866451 138866451 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013403 exon3 c.C356A p.S119X . . . MAGEC1 9947 broad.mit.edu 36 X 140822444 140822444 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005462 exon4 c.C1588A p.L530I . . . MAGEC1 9947 broad.mit.edu 36 X 140823111 140823111 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005462 exon4 c.C2255A p.S752Y . . . MAGEA11 4110 broad.mit.edu 36 X 148576478 148576478 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011544 exon5 c.C694T p.P232S . . . MAMLD1 10046 broad.mit.edu 36 X 149364459 149364459 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177466 exon1 c.C19T p.R7W . . . MAMLD1 10046 broad.mit.edu 36 X 149389108 149389108 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177466 exon2 c.C530T p.T177M . . . MAMLD1 10046 broad.mit.edu 36 X 149389630 149389630 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177466 exon2 c.C1052T p.S351L . . . PASD1 139135 broad.mit.edu 36 X 150590761 150590761 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173493 exon13 c.C1291T p.P431S . . . FATE1 89885 broad.mit.edu 36 X 150640559 150640559 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033085 exon3 c.T271G p.S91A . . . GABRQ 55879 broad.mit.edu 36 X 151569655 151569655 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018558 exon7 c.C857T p.S286L . . . MAGEA6 4105 broad.mit.edu 36 X 151620859 151620859 + Missense_Mutation SNP G A A rs71213380 unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005363 exon3 c.G893A p.R298H . . . MAGEA12 4111 broad.mit.edu 36 X 151651099 151651099 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005367 exon2 c.C358A p.L120M . . . NSDHL 50814 broad.mit.edu 36 X 151781840 151781840 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001129765 exon6 c.C459T p.V153V . . . ASB9 140462 broad.mit.edu 36 X 15178554 15178554 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168531 exon6 c.A487G p.K163E . . . ZNF185 7739 broad.mit.edu 36 X 151839929 151839929 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007150 exon9 c.G634A p.A212T . . . PNMA3 29944 broad.mit.edu 36 X 151976830 151976830 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013364 exon2 c.T762G p.C254W . . . FAM58A 92002 broad.mit.edu 36 X 152514729 152514729 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130997 exon2 c.T221C p.V74A . . . PNCK 139728 broad.mit.edu 36 X 152590266 152590266 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039582 exon6 c.A719C p.D240A . . . BCAP31 10134 broad.mit.edu 36 X 152634301 152634301 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001139457 exon4 c.G432A p.T144T . . . IDH3G 3421 broad.mit.edu 36 X 152706725 152706725 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004135 exon6 c.C406T p.R136C . . . AVPR2 554 broad.mit.edu 36 X 152824851 152824851 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000054 exon2 c.C697A p.H233N . . . OPN1LW 5956 broad.mit.edu 36 X 153071608 153071608 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020061 exon3 c.G411A p.G137G . . . TKTL1 8277 broad.mit.edu 36 X 153192391 153192391 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145933 exon4 c.T343G p.F115V . . . GAB3 139716 broad.mit.edu 36 X 153577435 153577435 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081573 exon8 c.T1481G p.F494C . . . F8 2157 broad.mit.edu 36 X 153785776 153785776 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000132 exon17 c.A5804G p.Y1935C . . . F8 2157 broad.mit.edu 36 X 153866200 153866200 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000132 exon6 c.C743A p.P248H . . . F8 2157 broad.mit.edu 36 X 153878563 153878563 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000132 exon3 c.T267C p.G89G . . . FUNDC2 65991 broad.mit.edu 36 X 153914885 153914885 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023934 exon2 c.A147C p.G49G . . . ACE2 59272 broad.mit.edu 36 X 15499680 15499680 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021804 exon14 c.G1825A p.D609N . . . CTPS2 56474 broad.mit.edu 36 X 16626967 16626967 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144002 exon3 c.G337T p.V113F . . . CTPS2 56474 broad.mit.edu 36 X 16630927 16630927 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144002 exon2 c.C20T p.T7M . . . REPS2 9185 broad.mit.edu 36 X 17075505 17075505 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004726 exon18 c.C1963T p.R655C . . . NHS 4810 broad.mit.edu 36 X 17615810 17615810 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136024 exon2 c.A62C p.K21T . . . NHS 4810 broad.mit.edu 36 X 17659958 17659958 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136024 exon9 c.C3878T p.S1293L . . . BEND2 139105 broad.mit.edu 36 X 18099059 18099059 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153346 exon13 c.A2168C p.K723T . . . BEND2 139105 broad.mit.edu 36 X 18123381 18123381 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153346 exon7 c.C1136T p.A379V . . . BEND2 139105 broad.mit.edu 36 X 18140618 18140618 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153346 exon4 c.C480T p.F160F . . . SCML2 10389 broad.mit.edu 36 X 18186234 18186234 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006089 exon10 c.G1124A p.R375K . . . CDKL5 6792 broad.mit.edu 36 X 18532800 18532800 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003159 exon12 c.C1835A p.S612Y . . . PHKA2 5256 broad.mit.edu 36 X 18871761 18871761 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000292 exon7 c.C705T p.V235V . . . MAP3K15 389840 broad.mit.edu 36 X 19289596 19289596 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001671 exon27 c.G3716A p.R1239K . . . MAP3K15 389840 broad.mit.edu 36 X 19320400 19320400 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001671 exon17 c.C2307T p.I769I . . . MAP3K15 389840 broad.mit.edu 36 X 19341412 19341412 + Silent SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001671 exon11 c.T1682C p.V561A . . . SH3KBP1 30011 broad.mit.edu 36 X 19674408 19674408 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024666 exon2 c.A124C p.S42R . . . SMS 6611 broad.mit.edu 36 X 21913200 21913200 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004595 exon9 c.C883A p.L295I . . . ZNF645 158506 broad.mit.edu 36 X 22201128 22201128 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152577 exon1 c.T99C p.I33I . . . DDX53 168400 broad.mit.edu 36 X 22929550 22929550 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182699 exon1 c.C1455T p.S485S . . . PCYT1B 9468 broad.mit.edu 36 X 24518129 24518129 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163264 exon4 c.C364T p.R122C . . . POLA1 5422 broad.mit.edu 36 X 24654093 24654093 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016937 exon13 c.G1374A p.S458S . . . POLA1 5422 broad.mit.edu 36 X 24676927 24676927 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016937 exon26 c.C2843T p.A948V . . . MAGEB18 286514 broad.mit.edu 36 X 26067395 26067395 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173699 exon2 c.G372A p.T124T . . . DCAF8L1 139425 broad.mit.edu 36 X 27907723 27907723 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017930 exon1 c.C1650A p.F550L . . . DCAF8L1 139425 broad.mit.edu 36 X 27907975 27907975 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017930 exon1 c.G1398A p.E466E . . . IL1RAPL1 11141 broad.mit.edu 36 X 29327272 29327272 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014271 exon5 c.A629G p.D210G . . . MAGEB2 4113 broad.mit.edu 36 X 30147369 30147369 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002364 exon2 c.G751A p.D251N . . . GK 2710 broad.mit.edu 36 X 30581640 30581640 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128127 exon1 c.C65T p.S22L . . . DMD 1756 broad.mit.edu 36 X 32317573 32317573 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004011 exon4 c.A461C p.Q154P . . . MXRA5 25878 broad.mit.edu 36 X 3245845 3245845 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015419 exon6 c.C5877T p.D1959D . . . FAM47A 158724 broad.mit.edu 36 X 34058076 34058076 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203408 exon1 c.C2241T p.G747G . . . FAM47A 158724 broad.mit.edu 36 X 34060227 34060227 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203408 exon1 c.C90T p.F30F . . . FAM47B 170062 broad.mit.edu 36 X 34870959 34870959 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152631 exon1 c.C90T p.F30F . . . PRKX 5613 broad.mit.edu 36 X 3543927 3543927 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005044 exon7 c.G880A p.A294T . . . CXorf22 170063 broad.mit.edu 36 X 35854134 35854134 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152632 exon2 c.A329G p.D110G . . . CXorf22 170063 broad.mit.edu 36 X 35879912 35879912 + Silent SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152632 exon6 c.A957C p.I319I . . . CXorf22 170063 broad.mit.edu 36 X 35903845 35903845 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152632 exon15 c.T2607C p.F869F . . . CXorf22 170063 broad.mit.edu 36 X 35917415 35917415 + Silent SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152632 exon16 c.T2772C p.S924S . . . CXorf22 170063 broad.mit.edu 36 X 35917531 35917531 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152632 exon16 c.A2888C p.E963A . . . CXorf27 25763 broad.mit.edu 36 X 37735327 37735327 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012274 exon1 c.C291T p.S97S . . . SYTL5 94122 broad.mit.edu 36 X 37854544 37854544 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138780 exon13 c.A1461C p.E487D . . . SYTL5 94122 broad.mit.edu 36 X 37866347 37866347 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138780 exon15 c.C1776A p.F592L . . . OTC 5009 broad.mit.edu 36 X 38125616 38125616 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000531 exon4 c.G376A p.D126N . . . USP9X 8239 broad.mit.edu 36 X 40912324 40912324 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039590 exon18 c.C2545T p.R849X . . . USP9X 8239 broad.mit.edu 36 X 40958826 40958826 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039590 exon34 c.C5251A p.L1751I . . . DDX3X 1654 broad.mit.edu 36 X 41089700 41089700 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001356 exon12 c.G1270T p.E424X . . . CASK 8573 broad.mit.edu 36 X 41370823 41370823 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001126054 exon10 c.C993A p.F331L . . . CXorf36 79742 broad.mit.edu 36 X 44896092 44896092 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176819 exon5 c.A1051C p.S351R . . . RP2 6102 broad.mit.edu 36 X 46597928 46597928 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006915 exon2 c.G176A p.G59E . . . USP11 8237 broad.mit.edu 36 X 46983756 46983756 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004651 exon3 c.G478A p.A160T . . . SYN1 6853 broad.mit.edu 36 X 47349363 47349363 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133499 exon5 c.C732A p.F244L . . . ZNF81 347344 broad.mit.edu 36 X 47660374 47660374 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007137 exon5 c.G1385T p.R462I . . . ZNF182 7569 broad.mit.edu 36 X 47721165 47721165 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006962 exon7 c.G1265T p.R422I . . . ZNF630 57232 broad.mit.edu 36 X 47803491 47803491 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190255 exon5 c.G1242A p.E414E . . . ZNF630 57232 broad.mit.edu 36 X 47803927 47803927 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190255 exon5 c.G806A p.R269K . . . SSX5 6758 broad.mit.edu 36 X 47932064 47932064 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175723 exon7 c.A514C p.K172Q . . . GATA1 2623 broad.mit.edu 36 X 48537255 48537255 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002049 exon6 c.G982A p.E328K . . . KCND1 3750 broad.mit.edu 36 X 48710721 48710721 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004979 exon1 c.G902A p.R301H . . . WDR45 11152 broad.mit.edu 36 X 48819796 48819796 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029896 exon10 c.T916C p.S306P . . . PLP2 5355 broad.mit.edu 36 X 48915351 48915351 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002668 exon1 c.G60A p.S20S . . . CACNA1F 778 broad.mit.edu 36 X 48958850 48958850 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005183 exon28 c.A3367C p.I1123L . . . CACNA1F 778 broad.mit.edu 36 X 48966469 48966469 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005183 exon15 c.C1981A p.L661I . . . PPP1R3F 89801 broad.mit.edu 36 X 49025461 49025461 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033215 exon3 c.G1134A p.M378I . . . PPP1R3F 89801 broad.mit.edu 36 X 49029807 49029807 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033215 exon4 c.G1711A p.E571K . . . DGKK 139189 broad.mit.edu 36 X 50139769 50139769 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013742 exon19 c.G2704T p.E902X . . . DGKK 139189 broad.mit.edu 36 X 50147344 50147344 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013742 exon14 c.C2066T p.A689V . . . DGKK 139189 broad.mit.edu 36 X 50163288 50163288 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013742 exon6 c.G1126A p.D376N . . . SHROOM4 57477 broad.mit.edu 36 X 50393387 50393387 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020717 exon4 c.A2426G p.Q809R . . . FAM120C 54954 broad.mit.edu 36 X 54116384 54116384 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017848 exon16 c.T3098C p.V1033A . . . WNK3 65267 broad.mit.edu 36 X 54341547 54341547 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002838 exon7 c.C1184T p.S395F . . . GNL3L 54552 broad.mit.edu 36 X 54595070 54595070 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019067 exon12 c.G1119T p.K373N . . . PFKFB1 5207 broad.mit.edu 36 X 54976983 54976983 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002625 exon13 c.C1352T p.P451L . . . APEX2 27301 broad.mit.edu 36 X 55049681 55049681 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014481 exon6 c.C645T p.C215C . . . APEX2 27301 broad.mit.edu 36 X 55049903 55049903 + Silent SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014481 exon6 c.C867A p.T289T . . . ALAS2 212 broad.mit.edu 36 X 55063570 55063570 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037967 exon5 c.C620T p.A207V . . . PAGE2 203569 broad.mit.edu 36 X 55134539 55134539 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207339 exon4 c.G243T p.E81D . . . SPIN2B 474343 broad.mit.edu 36 X 57163091 57163091 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006681 exon2 c.G697A p.E233K . . . NLGN4X 57502 broad.mit.edu 36 X 5821130 5821130 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020742 exon6 c.G2179A p.E727K . . . NLGN4X 57502 broad.mit.edu 36 X 5821293 5821293 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020742 exon6 c.C2016T p.S672S . . . NLGN4X 57502 broad.mit.edu 36 X 5821554 5821554 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020742 exon6 c.G1755A p.T585T . . . NLGN4X 57502 broad.mit.edu 36 X 6079178 6079178 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020742 exon2 c.C330T p.C110C . . . SPIN4 139886 broad.mit.edu 36 X 62486749 62486749 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012968 exon1 c.G675A p.A225A . . . ARHGEF9 23229 broad.mit.edu 36 X 62792288 62792288 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173480 exon7 c.T805G p.Y269D . . . FAM123B 139285 broad.mit.edu 36 X 63329366 63329366 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152424 exon2 c.A526G p.I176V . . . ZC4H2 55906 broad.mit.edu 36 X 64056768 64056768 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178032 exon3 c.G247T p.E83X . . . MSN 4478 broad.mit.edu 36 X 64871936 64871936 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002444 exon8 c.G878A p.R293H . . . EDA2R 60401 broad.mit.edu 36 X 65741652 65741652 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199687 exon3 c.G229A p.A77T . . . DLG3 1741 broad.mit.edu 36 X 69585521 69585521 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021120 exon2 c.G391A p.E131K . . . DLG3 1741 broad.mit.edu 36 X 69636556 69636556 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021120 exon16 c.G2077A p.E693K . . . IL2RG 3561 broad.mit.edu 36 X 70245936 70245936 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000206 exon5 c.C624T p.F208F . . . MED12 9968 broad.mit.edu 36 X 70262638 70262638 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005120 exon18 c.G2450A p.R817H . . . ZMYM3 9203 broad.mit.edu 36 X 70387009 70387009 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171162 exon5 c.G1071A p.K357K . . . ZMYM3 9203 broad.mit.edu 36 X 70388154 70388154 + Silent SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171162 exon3 c.G690A p.A230A . . . CXCR3 2833 broad.mit.edu 36 X 70753918 70753918 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001504 exon2 c.C129T p.C43C . . . NHSL2 340527 broad.mit.edu 36 X 71276025 71276025 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013627 exon6 c.C1902A p.F634L . . . ERCC6L 54821 broad.mit.edu 36 X 71343828 71343828 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017669 exon2 c.G1514A p.R505Q . . . PHKA1 5255 broad.mit.edu 36 X 71781048 71781048 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172436 exon14 c.G1348T p.E450X . . . NAP1L2 4674 broad.mit.edu 36 X 72350641 72350641 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021963 exon1 c.G413T p.R138I . . . CHIC1 53344 broad.mit.edu 36 X 72817532 72817532 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039840 exon6 c.C642A p.F214L . . . KIAA2022 340533 broad.mit.edu 36 X 73879156 73879156 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008537 exon3 c.C1961A p.S654X . . . ABCB7 22 broad.mit.edu 36 X 74190029 74190029 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004299 exon16 c.G2163T p.W721C . . . ABCB7 22 broad.mit.edu 36 X 74196845 74196845 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004299 exon15 c.A1984C p.I662L . . . MAGEE1 57692 broad.mit.edu 36 X 75567514 75567514 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020932 exon1 c.G2787A p.W929X . . . MAGT1 84061 broad.mit.edu 36 X 77017685 77017685 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032121 exon2 c.G264T p.M88I . . . PGK1 5230 broad.mit.edu 36 X 77265393 77265393 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000291 exon8 c.G802T p.D268Y . . . LPAR4 2846 broad.mit.edu 36 X 77897059 77897059 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005296 exon2 c.G37T p.D13Y . . . LPAR4 2846 broad.mit.edu 36 X 77897389 77897389 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005296 exon2 c.T367G p.Y123D . . . P2RY10 27334 broad.mit.edu 36 X 78103583 78103583 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198333 exon2 c.C910A p.L304I . . . TBX22 50945 broad.mit.edu 36 X 79167839 79167839 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109878 exon5 c.G540A p.P180P . . . BRWD3 254065 broad.mit.edu 36 X 79818871 79818871 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153252 exon41 c.T5302G p.F1768V . . . BRWD3 254065 broad.mit.edu 36 X 79818937 79818937 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153252 exon41 c.C5236T p.R1746X . . . BRWD3 254065 broad.mit.edu 36 X 79819185 79819185 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153252 exon41 c.G4988T p.R1663I . . . BRWD3 254065 broad.mit.edu 36 X 79819360 79819360 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153252 exon41 c.G4813A p.E1605K . . . BRWD3 254065 broad.mit.edu 36 X 79829047 79829047 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153252 exon35 c.C3976T p.R1326X . . . BRWD3 254065 broad.mit.edu 36 X 79864911 79864911 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153252 exon17 c.A1682C p.Y561S . . . POU3F4 5456 broad.mit.edu 36 X 82650077 82650077 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000307 exon1 c.C89A p.P30H . . . SATL1 340562 broad.mit.edu 36 X 84249441 84249441 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012980 exon1 c.G1190A p.R397K . . . DACH2 117154 broad.mit.edu 36 X 85956424 85956424 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053281 exon10 c.C1615T p.R539C . . . KLHL4 56062 broad.mit.edu 36 X 86777344 86777344 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057162 exon9 c.C1838T p.A613V . . . FAM9A 171482 broad.mit.edu 36 X 8726516 8726516 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174951 exon4 c.G225T p.K75N . . . TGIF2LX 90316 broad.mit.edu 36 X 89064367 89064367 + Silent SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138960 exon2 c.G627A p.E209E . . . PCDH11X 27328 broad.mit.edu 36 X 90977511 90977511 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032968 exon1 c.G352T p.E118X . . . PCDH11X 27328 broad.mit.edu 36 X 91019376 91019376 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032968 exon2 c.A1481G p.D494G . . . PCDH11X 27328 broad.mit.edu 36 X 91019525 91019525 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032968 exon2 c.G1630T p.D544Y . . . PCDH11X 27328 broad.mit.edu 36 X 91020490 91020490 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032968 exon2 c.A2595G p.I865M . . . PCDH11X 27328 broad.mit.edu 36 X 91020563 91020563 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032968 exon2 c.G2668T p.E890X . . . FAM133A 286499 broad.mit.edu 36 X 92851177 92851177 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171110 exon5 c.A103C p.N35H . . . DIAPH2 1730 broad.mit.edu 36 X 95880248 95880248 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006729 exon3 c.G173A p.R58Q . . . DIAPH2 1730 broad.mit.edu 36 X 96054144 96054144 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006729 exon7 c.A669C p.E223D . . . PCDH19 57526 broad.mit.edu 36 X 99438505 99438505 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105243 exon5 c.G2732A p.R911Q . . . PCDH19 57526 broad.mit.edu 36 X 99549657 99549657 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105243 exon1 c.G595A p.E199K . . . PCDH19 57526 broad.mit.edu 36 X 99549711 99549711 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001105243 exon1 c.C541T p.R181C . . . WWC3 55841 broad.mit.edu 36 X 9995413 9995413 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3984-01A-02W-0995-10 TCGA-AA-3984-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015691 exon3 c.G103A p.A35T . . .