Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target HPSE2 60495 broad.mit.edu 36 10 100982170 100982170 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166246 exon2 c.T373C p.F125L . . . HPSE2 60495 broad.mit.edu 36 10 100985338 100985338 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166246 exon1 c.T212C p.V71A . . . SLC25A28 81894 broad.mit.edu 36 10 101363507 101363507 + De_novo_Start_InFrame SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031212 exon2 c.C456T p.Y152Y . . . ABCC2 1244 broad.mit.edu 36 10 101546943 101546943 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000392 exon7 c.G732A p.T244T . . . ABCC2 1244 broad.mit.edu 36 10 101567078 101567078 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000392 exon17 c.G2118A p.Q706Q . . . DNMBP 23268 broad.mit.edu 36 10 101629986 101629986 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015221 exon16 c.T4120C p.F1374L . . . DNMBP 23268 broad.mit.edu 36 10 101706410 101706410 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015221 exon4 c.C811A p.R271R . . . SEC31B 25956 broad.mit.edu 36 10 102246008 102246008 + Silent SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015490 exon18 c.T2307G p.A769A . . . SEMA4G 57715 broad.mit.edu 36 10 102730939 102730939 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017893 exon13 c.G1668A p.E556E . . . LBX1 10660 broad.mit.edu 36 10 102977337 102977337 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006562 exon2 c.C526T p.R176W . . . BTRC 8945 broad.mit.edu 36 10 103281064 103281064 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003939 exon6 c.T716G p.I239S . . . SFXN2 118980 broad.mit.edu 36 10 104482637 104482637 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178858 exon9 c.G753T p.E251D . . . INA 9118 broad.mit.edu 36 10 105038355 105038355 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032727 exon3 c.C1439A p.S480Y . . . SH3PXD2A 9644 broad.mit.edu 36 10 105351761 105351761 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014631 exon14 c.C3120A p.F1040L . . . OBFC1 79991 broad.mit.edu 36 10 105638820 105638820 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024928 exon9 c.C949T p.H317Y . . . OBFC1 79991 broad.mit.edu 36 10 105660302 105660302 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024928 exon3 c.G202T p.E68X . . . CCDC147 159686 broad.mit.edu 36 10 106143195 106143195 + Missense_Mutation SNP G A A rs61732088 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008723 exon11 c.G1646A p.R549Q . . . SORCS3 22986 broad.mit.edu 36 10 107006617 107006617 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014978 exon25 c.C3388T p.L1130L . . . SORCS1 114815 broad.mit.edu 36 10 108449090 108449090 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052918 exon9 c.G1285T p.E429X . . . XPNPEP1 7511 broad.mit.edu 36 10 111637811 111637811 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167604 exon7 c.G638A p.G213D . . . ACSL5 51703 broad.mit.edu 36 10 114163050 114163050 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016234 exon12 c.G1246T p.D416Y . . . TCF7L2 6934 broad.mit.edu 36 10 114901543 114901543 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146284 exon9 c.C990A p.F330L . . . TCF7L2 6934 broad.mit.edu 36 10 114902110 114902110 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146284 exon10 c.C1109T p.A370V . . . TCF7L2 6934 broad.mit.edu 36 10 114915323 114915323 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146285 exon13 c.C1342T p.R448C TCF7L2,large_intestine,colon,Substitution - Missense,0 . . DCLRE1A 9937 broad.mit.edu 36 10 115584933 115584933 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014881 exon9 c.T3091G p.F1031V . . . C10orf118 55088 broad.mit.edu 36 10 115912672 115912672 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018017 exon2 c.A346G p.T116A . . . TDRD1 56165 broad.mit.edu 36 10 115967364 115967364 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198795 exon17 c.C2283A p.F761L . . . ATRNL1 26033 broad.mit.edu 36 10 117298987 117298987 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207303 exon26 c.C3746T p.A1249V . . . PNLIP 5406 broad.mit.edu 36 10 118317277 118317277 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000936 exon13 c.C1375A p.L459M . . . PNLIPRP1 5407 broad.mit.edu 36 10 118344240 118344240 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006229 exon5 c.C339T p.F113F . . . HSPA12A 259217 broad.mit.edu 36 10 118448181 118448181 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025015 exon5 c.A501C p.E167D . . . EMX2 2018 broad.mit.edu 36 10 119297637 119297637 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165924 exon2 c.G478A p.A160T . . . C10orf84 63877 broad.mit.edu 36 10 120085139 120085139 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134672 exon3 c.T239G p.F80C . . . UPF2 26019 broad.mit.edu 36 10 12111142 12111142 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080599 exon3 c.G753T p.R251S . . . UPF2 26019 broad.mit.edu 36 10 12111485 12111485 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080599 exon3 c.G410A p.R137Q . . . INPP5F 22876 broad.mit.edu 36 10 121557489 121557489 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014937 exon13 c.G1496A p.R499H . . . PPAPDC1A 196051 broad.mit.edu 36 10 122206861 122206861 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001030059 exon1 c.C54T p.F18F . . . CDC123 8872 broad.mit.edu 36 10 12320469 12320469 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006023 exon10 c.C696T p.F232F . . . HTRA1 5654 broad.mit.edu 36 10 124263744 124263744 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002775 exon9 c.C1322T p.S441F . . . ACADSB 36 broad.mit.edu 36 10 124787310 124787310 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001609 exon3 c.C260T p.S87L . . . ACADSB 36 broad.mit.edu 36 10 124790771 124790771 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001609 exon5 c.G567T p.K189N . . . GPR26 2849 broad.mit.edu 36 10 125416532 125416532 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153442 exon1 c.G619A p.D207N . . . CHST15 51363 broad.mit.edu 36 10 125761905 125761905 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015892 exon7 c.C1429T p.R477C . . . CHST15 51363 broad.mit.edu 36 10 125794170 125794170 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015892 exon3 c.G802T p.D268Y . . . CHST15 51363 broad.mit.edu 36 10 125795386 125795386 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015892 exon2 c.C333T p.F111F . . . C10orf137 26098 broad.mit.edu 36 10 127421776 127421776 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015608 exon17 c.G2429T p.R810I . . . BCCIP 56647 broad.mit.edu 36 10 127502207 127502207 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016567 exon1 c.G91T p.E31X . . . DHX32 55760 broad.mit.edu 36 10 127517727 127517727 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018180 exon9 c.C1714T p.R572C . . . ADAM12 8038 broad.mit.edu 36 10 128009045 128009045 + Silent SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021641 exon2 c.A112C p.R38R . . . MKI67 4288 broad.mit.edu 36 10 129794790 129794790 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145966 exon12 c.T4224G p.F1408L . . . MKI67 4288 broad.mit.edu 36 10 129795974 129795974 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145966 exon12 c.G3040A p.E1014K . . . MCM10 55388 broad.mit.edu 36 10 13270981 13270981 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018518 exon10 c.G1310A p.R437Q . . . PWWP2B 170394 broad.mit.edu 36 10 134069619 134069619 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138499 exon2 c.C1625A p.S542X . . . ADAM8 101 broad.mit.edu 36 10 134932257 134932257 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109 exon19 c.G2048A p.S683N . . . BEND7 222389 broad.mit.edu 36 10 13521292 13521292 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152751 exon9 c.A1293G p.S431S . . . SYCE1 93426 broad.mit.edu 36 10 135222373 135222373 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143764 exon4 c.C269T p.S90L . . . PRPF18 8559 broad.mit.edu 36 10 13682291 13682291 + Silent SNP G A A rs11540073 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003675 exon3 c.G186A p.S62S . . . CDNF 441549 broad.mit.edu 36 10 14907610 14907610 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029954 exon3 c.G259A p.A87T . . . SUV39H2 79723 broad.mit.edu 36 10 14979491 14979491 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193424 exon3 c.G818T p.R273I . . . PTER 9317 broad.mit.edu 36 10 16566630 16566630 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001484 exon3 c.A241C p.K81Q . . . CUBN 8029 broad.mit.edu 36 10 17186550 17186550 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081 exon12 c.G1291T p.E431X . . . NEBL 10529 broad.mit.edu 36 10 21138796 21138796 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006393 exon25 c.C2556T p.F852F . . . C10orf140 387640 broad.mit.edu 36 10 21844440 21844440 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207371 exon4 c.T2318G p.F773C . . . MLLT10 8028 broad.mit.edu 36 10 22002535 22002535 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195626 exon10 c.A1302C p.E434D . . . SPAG6 9576 broad.mit.edu 36 10 22697602 22697602 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012443 exon4 c.G461T p.R154I . . . PIP4K2A 5305 broad.mit.edu 36 10 22902351 22902351 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005028 exon5 c.C534A p.F178L . . . ARHGAP21 57584 broad.mit.edu 36 10 24949412 24949412 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020824 exon9 c.C1418T p.P473L . . . ARHGAP21 57584 broad.mit.edu 36 10 24949918 24949918 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020824 exon9 c.C912T p.G304G . . . GPR158 57512 broad.mit.edu 36 10 25741235 25741235 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020752 exon4 c.G1162T p.E388X . . . GPR158 57512 broad.mit.edu 36 10 25927389 25927389 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020752 exon11 c.G2828T p.R943I . . . MYO3A 53904 broad.mit.edu 36 10 26486401 26486401 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017433 exon26 c.C2950T p.R984X . . . MYO3A 53904 broad.mit.edu 36 10 26497690 26497690 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017433 exon28 c.G3155A p.R1052Q . . . MYO3A 53904 broad.mit.edu 36 10 26505725 26505725 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017433 exon31 c.T4383C p.G1461G . . . ABI1 10006 broad.mit.edu 36 10 27080619 27080619 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178124 exon7 c.A905C p.E302A . . . ANKRD26 22852 broad.mit.edu 36 10 27343450 27343450 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014915 exon31 c.C4703A p.S1568Y . . . ANKRD26 22852 broad.mit.edu 36 10 27363873 27363873 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014915 exon24 c.T3512G p.F1171C . . . ACBD5 91452 broad.mit.edu 36 10 27539929 27539929 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145698 exon9 c.C1024T p.R342C . . . PTCHD3 374308 broad.mit.edu 36 10 27742562 27742562 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001034842 exon1 c.C624T p.F208F . . . ARMC4 55130 broad.mit.edu 36 10 28236651 28236651 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018076 exon17 c.G2557T p.D853Y . . . WAC 51322 broad.mit.edu 36 10 28939735 28939735 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_100486 exon8 c.G958A p.A320T . . . KIAA1462 57608 broad.mit.edu 36 10 30355464 30355464 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020848 exon3 c.G3619T p.E1207X . . . KIAA1462 57608 broad.mit.edu 36 10 30357192 30357192 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020848 exon3 c.G1891A p.D631N . . . MTPAP 55149 broad.mit.edu 36 10 30642656 30642656 + Missense_Mutation SNP C T T rs17855116 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018109 exon9 c.G1637A p.S546N . . . MTPAP 55149 broad.mit.edu 36 10 30642785 30642785 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018109 exon9 c.G1508A p.R503Q . . . ZNF438 220929 broad.mit.edu 36 10 31178261 31178261 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001143771 exon7 c.C1049T p.A350V . . . ZEB1 6935 broad.mit.edu 36 10 31849704 31849704 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174093 exon6 c.C1375A p.L459I . . . PITRM1 10531 broad.mit.edu 36 10 3202319 3202319 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014889 exon2 c.A136C p.I46L . . . KIF5B 3799 broad.mit.edu 36 10 32362814 32362814 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004521 exon12 c.G1270T p.E424X . . . C10orf68 79741 broad.mit.edu 36 10 33134007 33134007 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024688 exon11 c.C885A p.F295L . . . ANKRD30A 91074 broad.mit.edu 36 10 37462947 37462947 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052997 exon5 c.G547T p.V183L . . . ZNF248 57209 broad.mit.edu 36 10 38160586 38160586 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021045 exon6 c.G1703T p.R568I . . . ZNF25 219749 broad.mit.edu 36 10 38281967 38281967 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145011 exon6 c.C465A p.F155L . . . BMS1 9790 broad.mit.edu 36 10 42612265 42612265 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014753 exon10 c.G1567T p.E523X . . . BMS1 9790 broad.mit.edu 36 10 42612371 42612371 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014753 exon10 c.G1673T p.S558I . . . OR13A1 79290 broad.mit.edu 36 10 45119116 45119116 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004297 exon4 c.A761G p.K254R . . . ALOX5 240 broad.mit.edu 36 10 45239539 45239539 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000698 exon5 c.C599A p.S200Y . . . FAM21C 253725 broad.mit.edu 36 10 45558937 45558937 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001169106 exon6 c.G622A p.E208K . . . ARHGAP22 58504 broad.mit.edu 36 10 49324599 49324599 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021226 exon10 c.G1938T p.K646N . . . LRRC18 474354 broad.mit.edu 36 10 49791572 49791572 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006939 exon1 c.G635T p.R212I . . . DRGX 644168 broad.mit.edu 36 10 50268274 50268274 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080520 exon3 c.G160A p.E54K . . . ERCC6 2074 broad.mit.edu 36 10 50349132 50349132 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000124 exon17 c.G2965T p.D989Y . . . PGBD3 267004 broad.mit.edu 36 10 50395159 50395159 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_170753 exon2 c.G8A p.R3Q . . . A1CF 29974 broad.mit.edu 36 10 52236520 52236520 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198818 exon14 c.G1736A p.R579Q . . . DIP2C 22982 broad.mit.edu 36 10 522462 522462 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014974 exon2 c.A94G p.T32A . . . A1CF 29974 broad.mit.edu 36 10 52250389 52250389 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198818 exon9 c.C796T p.R266X . . . PCDH15 65217 broad.mit.edu 36 10 55252824 55252824 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142767 exon31 c.A4548G p.I1516M . . . PCDH15 65217 broad.mit.edu 36 10 55452818 55452818 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142767 exon18 c.T2255G p.V752G . . . ZWINT 11130 broad.mit.edu 36 10 57788639 57788639 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_007057 exon6 c.G556T p.D186Y . . . IPMK 253430 broad.mit.edu 36 10 59646073 59646073 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152230 exon4 c.A385C p.K129Q . . . PHYHIPL 84457 broad.mit.edu 36 10 60675140 60675140 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143774 exon5 c.C836A p.S279Y . . . FAM13C 220965 broad.mit.edu 36 10 60713175 60713175 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143773 exon7 c.G297A p.A99A . . . ANK3 288 broad.mit.edu 36 10 61503743 61503743 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020987 exon37 c.C6902A p.S2301Y . . . ANK3 288 broad.mit.edu 36 10 61629961 61629961 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020987 exon13 c.C1423T p.R475C . . . RHOBTB1 9886 broad.mit.edu 36 10 62304797 62304797 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014836 exon9 c.C1736T p.A579V . . . JMJD1C 221037 broad.mit.edu 36 10 64636735 64636735 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004241 exon7 c.A4043C p.K1348T . . . PRKCQ 5588 broad.mit.edu 36 10 6512840 6512840 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006257 exon17 c.C1903T p.R635W . . . CTNNA3 29119 broad.mit.edu 36 10 67710352 67710352 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013266 exon13 c.C1766G p.A589G . . . TET1 80312 broad.mit.edu 36 10 70003350 70003350 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030625 exon2 c.G1249T p.E417X . . . STOX1 219736 broad.mit.edu 36 10 70316067 70316067 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152709 exon3 c.G2509T p.E837X . . . HKDC1 80201 broad.mit.edu 36 10 70690907 70690907 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025130 exon16 c.G2223T p.E741D . . . TACR2 6865 broad.mit.edu 36 10 70837034 70837034 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001057 exon4 c.G750T p.K250N . . . COL13A1 1305 broad.mit.edu 36 10 71301959 71301959 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080802 exon4 c.G386T p.R129I . . . PPA1 5464 broad.mit.edu 36 10 71643279 71643279 + Missense_Mutation SNP C T T rs11538284 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021129 exon6 c.G457A p.D153N . . . ADAMTS14 140766 broad.mit.edu 36 10 72159945 72159945 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080722 exon6 c.G1036A p.D346N . . . SGPL1 8879 broad.mit.edu 36 10 72303287 72303287 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003901 exon12 c.C1233T p.F411F . . . SFMBT2 57713 broad.mit.edu 36 10 7257961 7257961 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029880 exon17 c.T1981C p.Y661H . . . CDH23 64072 broad.mit.edu 36 10 73208027 73208027 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022124 exon38 c.G5143T p.D1715Y . . . CCDC109A 90550 broad.mit.edu 36 10 74314096 74314096 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138357 exon7 c.T928C p.S310P . . . MYOZ1 58529 broad.mit.edu 36 10 75061785 75061785 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021245 exon6 c.G809A p.R270Q . . . NDST2 8509 broad.mit.edu 36 10 75237384 75237384 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003635 exon3 c.C769A p.L257I . . . ITIH2 3698 broad.mit.edu 36 10 7826837 7826837 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002216 exon19 c.A2486G p.H829R . . . TAF3 83860 broad.mit.edu 36 10 7906484 7906484 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031923 exon2 c.G364T p.E122X . . . DLG5 9231 broad.mit.edu 36 10 79235556 79235556 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004747 exon27 c.G5037A p.T1679T . . . ZMIZ1 57178 broad.mit.edu 36 10 80727408 80727408 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020338 exon14 c.C1446A p.F482L . . . NRG3 10718 broad.mit.edu 36 10 84735212 84735212 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165973 exon11 c.C1371T p.S457S . . . CDHR1 92211 broad.mit.edu 36 10 85961979 85961979 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171971 exon15 c.G1618A p.A540T . . . LARP4B 23185 broad.mit.edu 36 10 861033 861033 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015155 exon12 c.G1456A p.E486K . . . FAM190B 54462 broad.mit.edu 36 10 86121884 86121884 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018999 exon2 c.G1096T p.E366X . . . MMRN2 79812 broad.mit.edu 36 10 88693105 88693105 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024756 exon6 c.C1416T p.N472N . . . GLUD1 2746 broad.mit.edu 36 10 88817849 88817849 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005271 exon5 c.G692A p.R231Q . . . FAM22A 728118 broad.mit.edu 36 10 88982623 88982623 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099338 exon5 c.C1635T p.G545G . . . PTEN 5728 broad.mit.edu 36 10 89682885 89682885 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000314 exon5 c.G389A p.R130Q PTEN,central_nervous_system,brain,Substitution - Nonsense,+1 . . PTEN 5728 broad.mit.edu 36 10 89710724 89710724 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000314 exon8 c.G895T p.E299X PTEN,endometrium,NS,Substitution - Nonsense,0 . . IFIT2 3433 broad.mit.edu 36 10 91055832 91055832 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001547 exon2 c.C139T p.R47C . . . IFIT1B 439996 broad.mit.edu 36 10 91133448 91133448 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010987 exon2 c.G398A p.R133H . . . IFIT1 3434 broad.mit.edu 36 10 91152776 91152776 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001548 exon2 c.G764A p.R255Q . . . IFIT5 24138 broad.mit.edu 36 10 91167744 91167744 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012420 exon2 c.G808A p.E270K . . . KIF20B 9585 broad.mit.edu 36 10 91488326 91488326 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016195 exon20 c.G3628T p.E1210X . . . HTR7 3363 broad.mit.edu 36 10 92498684 92498684 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019859 exon2 c.G1187A p.R396H . . . HTR7 3363 broad.mit.edu 36 10 92606931 92606931 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019859 exon1 c.G478A p.A160T . . . HTR7 3363 broad.mit.edu 36 10 92606988 92606988 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019859 exon1 c.A421G p.T141A . . . HTR7 3363 broad.mit.edu 36 10 92607172 92607172 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019859 exon1 c.C237T p.V79V . . . ANKRD1 27063 broad.mit.edu 36 10 92665333 92665333 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014391 exon8 c.A796G p.K266E . . . TNKS2 80351 broad.mit.edu 36 10 93607184 93607184 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025235 exon24 c.A3011C p.K1004T . . . BTAF1 9044 broad.mit.edu 36 10 93734032 93734032 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003972 exon19 c.G2318A p.R773Q . . . EXOC6 54536 broad.mit.edu 36 10 94685578 94685578 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013848 exon12 c.C1153T p.L385L . . . MYOF 26509 broad.mit.edu 36 10 95131010 95131010 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133337 exon19 c.A1793C p.K598T . . . PLCE1 51196 broad.mit.edu 36 10 95781055 95781055 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016341 exon2 c.G262T p.E88X . . . PLCE1 51196 broad.mit.edu 36 10 95921004 95921004 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165979 exon3 c.G646A p.D216N . . . NOC3L 64318 broad.mit.edu 36 10 96096225 96096225 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022451 exon11 c.A1336C p.K446Q . . . HELLS 3070 broad.mit.edu 36 10 96351331 96351331 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018063 exon22 c.G2479T p.E827X . . . CYP2C19 1557 broad.mit.edu 36 10 96602513 96602513 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000769 exon9 c.G1325A p.R442H . . . SORBS1 10580 broad.mit.edu 36 10 97125747 97125747 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001034954 exon17 c.C1710A p.F570L . . . ENTPD1 953 broad.mit.edu 36 10 97595139 97595139 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001776 exon6 c.C609T p.T203T . . . TM9SF3 56889 broad.mit.edu 36 10 98311801 98311801 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020123 exon4 c.G506A p.R169Q . . . C10orf12 26148 broad.mit.edu 36 10 98731229 98731229 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015652 exon1 c.G92T p.R31I . . . C10orf12 26148 broad.mit.edu 36 10 98731961 98731961 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015652 exon1 c.G824A p.R275Q . . . C10orf12 26148 broad.mit.edu 36 10 98734209 98734209 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015652 exon1 c.C3072T p.C1024C . . . PGAM1 5223 broad.mit.edu 36 10 99180243 99180243 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002629 exon2 c.G257A p.R86H . . . C10orf28 27291 broad.mit.edu 36 10 99981397 99981397 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014472 exon5 c.C1924T p.H642Y . . . ADM 133 broad.mit.edu 36 11 10284729 10284730 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001124 exon4 c.523_524insC p.A175fs . . . TMEM133 83935 broad.mit.edu 36 11 100368493 100368493 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032021 exon1 c.C244T p.R82C . . . ANGPTL5 253935 broad.mit.edu 36 11 101267455 101267455 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178127 exon9 c.G932A p.R311H . . . KIAA1377 57562 broad.mit.edu 36 11 101338845 101338845 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020802 exon6 c.T1869C p.I623I . . . MMP12 4321 broad.mit.edu 36 11 102247798 102247798 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002426 exon3 c.T445G p.F149V . . . MMP12 4321 broad.mit.edu 36 11 102249036 102249036 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002426 exon2 c.T119G p.F40C . . . DYNC2H1 79659 broad.mit.edu 36 11 102485568 102485568 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001377 exon1 c.A55C p.N19H . . . DYNC2H1 79659 broad.mit.edu 36 11 102504852 102504852 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001377 exon13 c.G1861A p.A621T . . . DYNC2H1 79659 broad.mit.edu 36 11 102575221 102575221 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001377 exon49 c.G7894A p.E2632K . . . DDI1 414301 broad.mit.edu 36 11 103413901 103413901 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001711 exon1 c.G1141T p.D381Y . . . CASP5 838 broad.mit.edu 36 11 104376290 104376290 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136112 exon6 c.T899G p.L300R . . . CASP1 834 broad.mit.edu 36 11 104405660 104405660 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033292 exon6 c.G804T p.K268N . . . AMPD3 272 broad.mit.edu 36 11 10463069 10463069 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025389 exon5 c.A716G p.E239G . . . GUCY1A2 2977 broad.mit.edu 36 11 106063490 106063490 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000855 exon8 c.C2194A p.L732I . . . GUCY1A2 2977 broad.mit.edu 36 11 106185932 106185932 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000855 exon5 c.T1689C p.Y563Y . . . GUCY1A2 2977 broad.mit.edu 36 11 106186136 106186136 + Nonsense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000855 exon5 c.T1485G p.Y495X . . . GUCY1A2 2977 broad.mit.edu 36 11 106316042 106316042 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000855 exon4 c.G560T p.R187I . . . CWF19L2 143884 broad.mit.edu 36 11 106804938 106804938 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152434 exon8 c.G1230T p.K410N . . . ATM 472 broad.mit.edu 36 11 107635010 107635010 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000051 exon16 c.T2464G p.L822V . . . ATM 472 broad.mit.edu 36 11 107710921 107710921 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000051 exon55 c.G8026T p.E2676X . . . ZC3H12C 85463 broad.mit.edu 36 11 109528867 109528867 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033390 exon3 c.G787T p.E263X . . . TTC12 54970 broad.mit.edu 36 11 112710945 112710945 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017868 exon8 c.C552T p.N184N . . . DRD2 1813 broad.mit.edu 36 11 112788645 112788645 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000795 exon7 c.G981T p.K327N . . . TMPRSS5 80975 broad.mit.edu 36 11 113065768 113065768 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030770 exon12 c.G1288A p.A430T . . . ZBTB16 7704 broad.mit.edu 36 11 113440332 113440332 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006006 exon2 c.A1100C p.D367A . . . GALNTL4 374378 broad.mit.edu 36 11 11357236 11357236 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198516 exon4 c.C747A p.L249L . . . FAM55D 54827 broad.mit.edu 36 11 113957686 113957686 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017678 exon4 c.T11G p.F4C . . . FAM55D 54827 broad.mit.edu 36 11 113958825 113958825 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077639 exon3 c.C225A p.I75I . . . DSCAML1 57453 broad.mit.edu 36 11 116813945 116813945 + Silent SNP G A A rs2305824 byCluster;byFrequency;byHapMap TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020693 exon25 c.C4488T p.S1496S . . . DSCAML1 57453 broad.mit.edu 36 11 116892404 116892404 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020693 exon8 c.G1951A p.V651I . . . FXYD6 53826 broad.mit.edu 36 11 117215733 117215733 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164837 exon8 c.G282T p.E94D . . . MLL 4297 broad.mit.edu 36 11 117878876 117878876 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005933 exon27 c.C7050A p.S2350S . . . ARCN1 372 broad.mit.edu 36 11 117969580 117969580 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142281 exon7 c.G934T p.D312Y . . . PHLDB1 23187 broad.mit.edu 36 11 117991994 117991994 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144758 exon4 c.A213G p.R71R . . . TRAPPC4 51399 broad.mit.edu 36 11 118397753 118397753 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016146 exon4 c.T528G p.I176M . . . HMBS 3145 broad.mit.edu 36 11 118468409 118468409 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000190 exon11 c.G737A p.R246H . . . ABCG4 64137 broad.mit.edu 36 11 118532324 118532324 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142505 exon7 c.C762A p.I254I . . . USP47 55031 broad.mit.edu 36 11 11920533 11920533 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017944 exon19 c.C2185T p.R729W . . . ARHGEF12 23365 broad.mit.edu 36 11 119824213 119824213 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198665 exon19 c.G1626A p.E542E . . . GRIK4 2900 broad.mit.edu 36 11 120281302 120281302 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014619 exon11 c.G1366A p.A456T . . . GRIK4 2900 broad.mit.edu 36 11 120338440 120338440 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014619 exon16 c.C2106T p.F702F . . . TECTA 7007 broad.mit.edu 36 11 120501454 120501454 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005422 exon7 c.G1437A p.P479P . . . SC5DL 6309 broad.mit.edu 36 11 120679468 120679468 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006918 exon2 c.C174T p.F58F . . . SORL1 6653 broad.mit.edu 36 11 120872804 120872804 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003105 exon6 c.G775A p.D259N . . . SORL1 6653 broad.mit.edu 36 11 120872943 120872943 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003105 exon6 c.A914C p.K305T . . . UBASH3B 84959 broad.mit.edu 36 11 122174919 122174919 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032873 exon10 c.C1417T p.R473C . . . C11orf63 79864 broad.mit.edu 36 11 122333283 122333283 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024806 exon8 c.G2013A p.T671T . . . ASAM 79827 broad.mit.edu 36 11 122459626 122459626 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024769 exon4 c.T528C p.D176D . . . MICALCL 84953 broad.mit.edu 36 11 12272336 12272336 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032867 exon3 c.G782A p.R261Q . . . OR6T1 219874 broad.mit.edu 36 11 123319106 123319106 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005187 exon1 c.C650A p.S217Y . . . OR8G2 26492 broad.mit.edu 36 11 123601512 123601512 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007249 exon1 c.C905A p.S302Y . . . OR8B3 390271 broad.mit.edu 36 11 123771787 123771787 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005467 exon1 c.G671T p.S224I . . . OR8B8 26493 broad.mit.edu 36 11 123815277 123815277 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012378 exon1 c.G915A p.L305L . . . PUS3 83480 broad.mit.edu 36 11 125271088 125271088 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031307 exon2 c.G302A p.R101Q . . . KIRREL3 84623 broad.mit.edu 36 11 125848452 125848452 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032531 exon5 c.C553T p.R185X . . . KCNJ5 3762 broad.mit.edu 36 11 128286817 128286817 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000890 exon2 c.G439A p.E147K . . . BARX2 8538 broad.mit.edu 36 11 128826384 128826384 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003658 exon4 c.G717A p.G239G . . . OPCML 4978 broad.mit.edu 36 11 132032264 132032264 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012393 exon3 c.G307A p.E103K . . . BTBD10 84280 broad.mit.edu 36 11 13423186 13423186 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032320 exon2 c.A62C p.K21T . . . COPB1 1315 broad.mit.edu 36 11 14453983 14453983 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016451 exon13 c.T1540G p.L514V . . . PDE3B 5140 broad.mit.edu 36 11 14796388 14796388 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000922 exon6 c.G1606T p.E536X . . . PIK3C2A 5286 broad.mit.edu 36 11 17147150 17147150 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002645 exon1 c.A715C p.N239H . . . ABCC8 6833 broad.mit.edu 36 11 17376466 17376466 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000352 exon30 c.G3749A p.R1250Q . . . ABCC8 6833 broad.mit.edu 36 11 17376533 17376533 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000352 exon30 c.G3682A p.E1228K . . . ABCC8 6833 broad.mit.edu 36 11 17390792 17390792 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000352 exon21 c.C2553A p.F851L . . . HPS5 11234 broad.mit.edu 36 11 18269952 18269952 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181508 exon15 c.G1711T p.D571Y . . . GTF2H1 2965 broad.mit.edu 36 11 18330480 18330480 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142307 exon12 c.T1171G p.S391A . . . NAV2 89797 broad.mit.edu 36 11 20092836 20092836 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111018 exon37 c.C6891T p.V2297V . . . PRMT3 10196 broad.mit.edu 36 11 20430282 20430282 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005788 exon11 c.G1024T p.D342Y . . . NELL1 4745 broad.mit.edu 36 11 20761873 20761873 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006157 exon3 c.G256T p.E86X . . . LUZP2 338645 broad.mit.edu 36 11 24710278 24710278 + Silent SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009909 exon3 c.T219G p.V73V . . . CCDC34 91057 broad.mit.edu 36 11 27328520 27328520 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030771 exon3 c.C541T p.R181C . . . LGR4 55366 broad.mit.edu 36 11 27369242 27369242 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018490 exon4 c.C376T p.R126X . . . KIF18A 81930 broad.mit.edu 36 11 28037185 28037185 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031217 exon13 c.C1812T p.I604I . . . DNAJC24 120526 broad.mit.edu 36 11 31393003 31393003 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181706 exon3 c.G181A p.E61K . . . RCN1 5954 broad.mit.edu 36 11 32075359 32075359 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002901 exon2 c.C348A p.I116I . . . CCDC73 493860 broad.mit.edu 36 11 32591995 32591995 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008391 exon16 c.G2445A p.E815E . . . DEPDC7 91614 broad.mit.edu 36 11 33011532 33011532 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139160 exon9 c.C1464A p.F488L . . . HIPK3 10114 broad.mit.edu 36 11 33264649 33264649 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001048200 exon2 c.G113T p.R38I . . . HIPK3 10114 broad.mit.edu 36 11 33265128 33265128 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001048200 exon2 c.G592A p.E198K . . . C11orf41 25758 broad.mit.edu 36 11 33522351 33522351 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A A A A Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_012194 exon1 c.A1775C p.N592T . . . FBXO3 26273 broad.mit.edu 36 11 33747019 33747019 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033406 exon3 c.G312T p.K104N . . . CAPRIN1 4076 broad.mit.edu 36 11 34067573 34067573 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203364 exon12 c.G1287A p.A429A . . . ABTB2 25841 broad.mit.edu 36 11 34138390 34138390 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145804 exon12 c.G2484T p.K828N . . . RAG1 5896 broad.mit.edu 36 11 36553156 36553156 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000448 exon2 c.G1726T p.D576Y . . . RAG2 5897 broad.mit.edu 36 11 36571963 36571963 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000536 exon2 c.C332A p.S111Y . . . STIM1 6786 broad.mit.edu 36 11 3834154 3834154 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003156 exon1 c.T78C p.S26S . . . LRRC4C 57689 broad.mit.edu 36 11 40093768 40093768 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020929 exon2 c.G651A p.P217P . . . LRRC4C 57689 broad.mit.edu 36 11 40093999 40093999 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020929 exon2 c.G420A p.P140P . . . TTC17 55761 broad.mit.edu 36 11 43385509 43385509 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018259 exon15 c.G1870T p.E624X . . . MAPK8IP1 9479 broad.mit.edu 36 11 45881226 45881226 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005456 exon5 c.C1332T p.S444S . . . LRP4 4038 broad.mit.edu 36 11 46851713 46851713 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002334 exon29 c.G4237T p.D1413Y . . . RAPSN 5913 broad.mit.edu 36 11 47426180 47426180 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005055 exon2 c.C291T p.C97C . . . OR51F1 256892 broad.mit.edu 36 11 4746968 4746968 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004752 exon1 c.C756A p.F252L . . . NUP160 23279 broad.mit.edu 36 11 47776585 47776585 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015231 exon24 c.C2902T p.R968X . . . PTPRJ 5795 broad.mit.edu 36 11 48099373 48099373 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098503 exon4 c.A595G p.R199G . . . OR4S1 256148 broad.mit.edu 36 11 48284662 48284662 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004725 exon1 c.C312A p.F104L . . . OR51A7 119687 broad.mit.edu 36 11 4885635 4885635 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004749 exon1 c.C460A p.L154I . . . FOLH1 2346 broad.mit.edu 36 11 49184249 49184249 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193471 exon3 c.A125C p.N42T . . . OR51V1 283111 broad.mit.edu 36 11 5177889 5177889 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004760 exon1 c.C618T p.Y206Y . . . OR51M1 390059 broad.mit.edu 36 11 5367246 5367246 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004756 exon1 c.A42G p.L14L . . . OR51M1 390059 broad.mit.edu 36 11 5367683 5367683 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004756 exon1 c.T479C p.V160A . . . OR51I1 390063 broad.mit.edu 36 11 5419033 5419033 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005288 exon1 c.T288C p.F96F . . . OR52D1 390066 broad.mit.edu 36 11 5467434 5467434 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005163 exon1 c.C922A p.L308I . . . UBQLN3 50613 broad.mit.edu 36 11 5485687 5485687 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017481 exon2 c.G1678A p.E560K . . . UBQLN3 50613 broad.mit.edu 36 11 5487190 5487190 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017481 exon2 c.G175A p.D59N . . . UBQLNL 143630 broad.mit.edu 36 11 5493659 5493659 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145053 exon1 c.G589T p.E197X . . . OR4C6 219432 broad.mit.edu 36 11 55190014 55190014 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004704 exon1 c.G796T p.D266Y . . . OR5D18 219438 broad.mit.edu 36 11 55344215 55344215 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001952 exon1 c.C534A p.F178L . . . OR5I1 10798 broad.mit.edu 36 11 55460388 55460388 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006637 exon1 c.G65A p.R22H . . . OR5F1 338674 broad.mit.edu 36 11 55517871 55517871 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003697 exon1 c.T807C p.N269N . . . OR5J2 282775 broad.mit.edu 36 11 55701493 55701493 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005492 exon1 c.C824A p.S275Y . . . OR8H1 219469 broad.mit.edu 36 11 55814192 55814192 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005199 exon1 c.A923C p.Q308P . . . OR8K1 390157 broad.mit.edu 36 11 55870522 55870522 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002907 exon1 c.G432T p.E144D . . . OR8J1 219477 broad.mit.edu 36 11 55884475 55884475 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005205 exon1 c.G177T p.M59I . . . TRIM6 117854 broad.mit.edu 36 11 5588621 5588621 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003818 exon8 c.C1024A p.L342I . . . OR5M3 219482 broad.mit.edu 36 11 55993808 55993808 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004742 exon1 c.A742C p.I248L . . . TRIM6-TRIM34 445372 broad.mit.edu 36 11 5621386 5621386 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003827 exon8 c.T1338G p.F446L . . . PRG2 5553 broad.mit.edu 36 11 56945084 56945084 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199329 exon7 c.G468A p.S156S . . . OR5B17 219965 broad.mit.edu 36 11 57882244 57882244 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005489 exon1 c.A875G p.N292S . . . OR5B17 219965 broad.mit.edu 36 11 57882631 57882631 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005489 exon1 c.G488A p.R163H . . . OR5B2 390190 broad.mit.edu 36 11 57946797 57946797 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005566 exon1 c.G514A p.V172I . . . OR52N2 390077 broad.mit.edu 36 11 5798801 5798801 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005174 exon1 c.C660T p.Y220Y . . . OR52E8 390079 broad.mit.edu 36 11 5834809 5834809 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005168 exon1 c.C700T p.P234S . . . FAM111B 374393 broad.mit.edu 36 11 58648893 58648893 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142703 exon3 c.T657G p.I219M . . . OR56A3 390083 broad.mit.edu 36 11 5926028 5926028 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003443 exon1 c.C876T p.N292N . . . GIF 2694 broad.mit.edu 36 11 59366589 59366589 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005142 exon4 c.G414A p.A138A . . . MS4A15 219995 broad.mit.edu 36 11 60287990 60287990 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098835 exon2 c.G208T p.E70X . . . TMEM132A 54972 broad.mit.edu 36 11 60457671 60457671 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017870 exon8 c.C1441T p.R481C . . . DAK 26007 broad.mit.edu 36 11 60869912 60869912 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015533 exon17 c.C1493A p.S498Y . . . AHNAK 79026 broad.mit.edu 36 11 62043036 62043036 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001620 exon5 c.C15429A p.V5143V . . . AHNAK 79026 broad.mit.edu 36 11 62052900 62052900 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001620 exon5 c.C5565A p.I1855I . . . EEF1G 1937 broad.mit.edu 36 11 62095920 62095920 + De_novo_Start_OutOfFrame SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001404 exon3 c.C201A p.F67L . . . MTA2 9219 broad.mit.edu 36 11 62119035 62119035 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004739 exon15 c.G1567T p.D523Y . . . MTA2 9219 broad.mit.edu 36 11 62124282 62124282 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004739 exon3 c.A122C p.K41T . . . ZBTB3 79842 broad.mit.edu 36 11 62276170 62276170 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024784 exon2 c.G1693T p.D565Y . . . SLC22A6 9356 broad.mit.edu 36 11 62503915 62503915 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004790 exon7 c.C1119A p.I373I . . . SLC22A8 9376 broad.mit.edu 36 11 62538862 62538862 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184732 exon2 c.T145C p.C49R . . . SLC22A9 114571 broad.mit.edu 36 11 62906209 62906209 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080866 exon6 c.T957G p.I319M . . . PRKCDBP 112464 broad.mit.edu 36 11 6297346 6297346 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_145040 exon2 c.G409A p.A137T . . . HRASLS2 54979 broad.mit.edu 36 11 63084201 63084201 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017878 exon2 c.C50A p.S17Y . . . RASGRP2 10235 broad.mit.edu 36 11 64265029 64265029 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098670 exon5 c.G338A p.R113Q . . . SF1 7536 broad.mit.edu 36 11 64292288 64292288 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201998 exon9 c.G934T p.E312X . . . BATF2 116071 broad.mit.edu 36 11 64513359 64513359 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138456 exon3 c.A643G p.T215A . . . SIPA1 6494 broad.mit.edu 36 11 65170356 65170356 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006747 exon7 c.G1352A p.R451H . . . SYT12 91683 broad.mit.edu 36 11 66569843 66569843 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177880 exon7 c.G1011T p.K337N . . . TCIRG1 10312 broad.mit.edu 36 11 67572009 67572009 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006019 exon13 c.C1548T p.I516I . . . MRGPRD 116512 broad.mit.edu 36 11 68504416 68504416 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198923 exon1 c.C616T p.R206W . . . PPFIA1 8500 broad.mit.edu 36 11 69867590 69867590 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003626 exon15 c.G1875A p.A625A . . . PPFIA1 8500 broad.mit.edu 36 11 69898705 69898705 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003626 exon24 c.G3173A p.R1058H . . . PDE2A 5138 broad.mit.edu 36 11 71979264 71979264 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002599 exon8 c.C558T p.V186V . . . ARAP1 116985 broad.mit.edu 36 11 72091615 72091615 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040118 exon15 c.G2150A p.R717Q . . . C2CD3 26005 broad.mit.edu 36 11 73463006 73463006 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015531 exon24 c.T4891C p.L1631L . . . DGAT2 84649 broad.mit.edu 36 11 75185029 75185029 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032564 exon5 c.G438T p.K146N . . . C11orf30 56946 broad.mit.edu 36 11 75938645 75938645 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020193 exon21 c.C3776T p.A1259V . . . CAPN5 726 broad.mit.edu 36 11 76507733 76507733 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004055 exon9 c.G1177A p.E393K . . . CLNS1A 1207 broad.mit.edu 36 11 77018509 77018509 + Missense_Mutation SNP C T T rs35303781 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001293 exon2 c.G209A p.R70Q . . . RSF1 51773 broad.mit.edu 36 11 77087365 77087365 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016578 exon7 c.C2530T p.R844X . . . ODZ4 26011 broad.mit.edu 36 11 78065055 78065055 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098816 exon30 c.C5286T p.I1762I . . . OR10A3 26496 broad.mit.edu 36 11 7917366 7917366 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003745 exon1 c.C278A p.S93Y . . . ANKRD42 338699 broad.mit.edu 36 11 82613615 82613615 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182603 exon6 c.G573A p.T191T . . . CREBZF 58487 broad.mit.edu 36 11 85053226 85053226 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039618 exon1 c.G342A p.R114R . . . CCDC83 220047 broad.mit.edu 36 11 85274897 85274897 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173556 exon5 c.G350A p.R117H . . . ME3 10873 broad.mit.edu 36 11 85839020 85839020 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161586 exon9 c.C988A p.H330N . . . PRSS23 11098 broad.mit.edu 36 11 86197010 86197010 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007173 exon2 c.G677A p.R226H . . . ST5 6764 broad.mit.edu 36 11 8696013 8696013 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005418 exon8 c.G1480T p.D494Y . . . ASCL3 56676 broad.mit.edu 36 11 8915872 8915872 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020646 exon2 c.C413T p.A138V . . . FAT3 120114 broad.mit.edu 36 11 91726316 91726316 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008781 exon1 c.G1390T p.D464Y . . . FAT3 120114 broad.mit.edu 36 11 91727459 91727459 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008781 exon1 c.G2533T p.G845C . . . FAT3 120114 broad.mit.edu 36 11 92174041 92174041 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008781 exon9 c.C8214A p.V2738V . . . SLC36A4 120103 broad.mit.edu 36 11 92540862 92540862 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152313 exon7 c.C664A p.L222I . . . HEPHL1 341208 broad.mit.edu 36 11 93455249 93455249 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098672 exon10 c.G1734A p.E578E . . . IPO7 10527 broad.mit.edu 36 11 9413133 9413133 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006391 exon19 c.G2151T p.M717I . . . CEP57 9702 broad.mit.edu 36 11 95200672 95200672 + Silent SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014679 exon9 c.T960G p.A320A . . . MAML2 84441 broad.mit.edu 36 11 95351778 95351778 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032427 exon5 c.C3453A p.I1151I . . . JRKL 8690 broad.mit.edu 36 11 95764429 95764429 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003772 exon1 c.T968C p.I323T . . . SBF2 81846 broad.mit.edu 36 11 9820781 9820781 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030962 exon25 c.C3223T p.R1075C . . . CNTN5 53942 broad.mit.edu 36 11 99684353 99684353 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175566 exon20 c.G2451T p.E817D . . . MUC5B 727897 broad.mit.edu 36 11 1222851 1222853 + In_Frame_Del DEL CCG - - novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 CCG CCG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002458 exon31 c.8165_8167del p.2722_2723del . . . LOC643923 643923 broad.mit.edu 36 11 106968354 106968354 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . C11orf92 399948 broad.mit.edu 36 11 110672298 110672298 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . ANO4 121601 broad.mit.edu 36 12 100044918 100044918 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178826 exon26 c.T2702C p.L901P . . . UTP20 27340 broad.mit.edu 36 12 100213481 100213481 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014503 exon12 c.G1344A p.K448K . . . UTP20 27340 broad.mit.edu 36 12 100301479 100301479 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014503 exon60 c.G7957A p.A2653T . . . MYBPC1 4604 broad.mit.edu 36 12 100577594 100577594 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002465 exon19 c.G1781A p.G594D . . . GNPTAB 79158 broad.mit.edu 36 12 100679564 100679564 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024312 exon14 c.C2824A p.L942I . . . GNPTAB 79158 broad.mit.edu 36 12 100686054 100686054 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024312 exon11 c.C1300T p.P434S . . . CLEC1A 51267 broad.mit.edu 36 12 10115210 10115210 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016511 exon6 c.G832A p.E278K . . . CLEC7A 64581 broad.mit.edu 36 12 10162434 10162434 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022570 exon5 c.A496G p.T166A . . . STAB2 55576 broad.mit.edu 36 12 102570516 102570516 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017564 exon12 c.A1310G p.H437R . . . NFYB 4801 broad.mit.edu 36 12 103041176 103041176 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006166 exon5 c.T387G p.S129R . . . EID3 493861 broad.mit.edu 36 12 103222107 103222107 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008394 exon1 c.G265A p.D89N . . . TXNRD1 7296 broad.mit.edu 36 12 103237477 103237477 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182743 exon6 c.G523T p.E175X . . . KLRD1 3824 broad.mit.edu 36 12 10355380 10355380 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114396 exon5 c.T214C p.C72R . . . TCP11L2 255394 broad.mit.edu 36 12 105239559 105239559 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152772 exon5 c.C580T p.R194X . . . BTBD11 121551 broad.mit.edu 36 12 106575419 106575419 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017523 exon15 c.C1720A p.L574I . . . WSCD2 9671 broad.mit.edu 36 12 107124206 107124206 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014653 exon3 c.C393T p.I131I . . . WSCD2 9671 broad.mit.edu 36 12 107142750 107142750 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014653 exon5 c.G787A p.D263N . . . SELPLG 6404 broad.mit.edu 36 12 107541208 107541208 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003006 exon3 c.C975T p.F325F . . . ALKBH2 121642 broad.mit.edu 36 12 108014872 108014872 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145374 exon2 c.G103T p.E35X . . . ACACB 32 broad.mit.edu 36 12 108115912 108115912 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001093 exon15 c.C2476A p.L826I . . . MYO1H 283446 broad.mit.edu 36 12 108328115 108328115 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101421 exon7 c.C807A p.L269L . . . TAS2R10 50839 broad.mit.edu 36 12 10869514 10869514 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023921 exon1 c.C622T p.Q208X . . . GIT2 9815 broad.mit.edu 36 12 108883473 108883473 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135214 exon11 c.G980A p.R327Q . . . ANKRD13A 88455 broad.mit.edu 36 12 108934244 108934244 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033121 exon2 c.T148C p.S50P . . . ATP2A2 488 broad.mit.edu 36 12 109250110 109250110 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170665 exon8 c.C1000T p.R334X . . . CCDC63 160762 broad.mit.edu 36 12 109806316 109806316 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152591 exon8 c.A953G p.N318S . . . C12orf51 283450 broad.mit.edu 36 12 111126679 111126679 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109662 exon52 c.C7747T p.R2583X . . . PTPN11 5781 broad.mit.edu 36 12 111372574 111372574 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002834 exon3 c.G207T p.E69D PTPN11,central_nervous_system,brain,Substitution - Missense,+2 . . RPH3A 22895 broad.mit.edu 36 12 111769988 111769988 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014954 exon4 c.C176A p.A59D . . . RBM19 9904 broad.mit.edu 36 12 112869614 112869614 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016196 exon11 c.A1315C p.T439P . . . RBM19 9904 broad.mit.edu 36 12 112880224 112880224 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016196 exon6 c.G586A p.E196K . . . TBX5 6910 broad.mit.edu 36 12 113326010 113326010 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000192 exon2 c.C77T p.S26L . . . MED13L 23389 broad.mit.edu 36 12 114891252 114891252 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015335 exon28 c.A6101G p.D2034G . . . WSB2 55884 broad.mit.edu 36 12 116965517 116965517 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018639 exon3 c.G231A p.T77T . . . TAOK3 51347 broad.mit.edu 36 12 117121444 117121444 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016281 exon13 c.A989G p.D330G . . . SRRM4 84530 broad.mit.edu 36 12 118067742 118067742 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194286 exon9 c.C945T p.G315G . . . CCDC64 92558 broad.mit.edu 36 12 118986955 118986955 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207311 exon4 c.G798T p.E266D . . . MSI1 4440 broad.mit.edu 36 12 119286911 119286911 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002442 exon5 c.G298A p.A100T MSI1,central_nervous_system,brain,Substitution - Missense,0 . . MLEC 9761 broad.mit.edu 36 12 119618609 119618609 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014730 exon5 c.C757T p.R253W . . . C12orf43 64897 broad.mit.edu 36 12 119926408 119926408 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022895 exon6 c.G720A p.K240K . . . WDR66 144406 broad.mit.edu 36 12 120846163 120846163 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178003 exon3 c.G631T p.E211X . . . WDR66 144406 broad.mit.edu 36 12 120876570 120876570 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178003 exon10 c.T1482C p.C494C . . . WDR66 144406 broad.mit.edu 36 12 120922023 120922023 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144668 exon20 c.G3025A p.E1009K . . . MLXIP 22877 broad.mit.edu 36 12 121185821 121185821 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014938 exon10 c.C1830A p.V610V . . . CLIP1 6249 broad.mit.edu 36 12 121329543 121329543 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198240 exon20 c.G3612T p.E1204D . . . BCL2L14 79370 broad.mit.edu 36 12 12138748 12138748 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030766 exon5 c.A715C p.S239R . . . LRP6 4040 broad.mit.edu 36 12 12203294 12203294 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002336 exon12 c.G2527T p.D843Y . . . DNAH10 196385 broad.mit.edu 36 12 122869655 122869655 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207437 exon22 c.G3551A p.R1184Q . . . DNAH10 196385 broad.mit.edu 36 12 122883716 122883716 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207437 exon26 c.G4294A p.E1432K . . . ZNF664 144348 broad.mit.edu 36 12 123063300 123063300 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152437 exon6 c.G656T p.R219I . . . UBC 7316 broad.mit.edu 36 12 123964262 123964262 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021009 exon2 c.C9A p.I3I . . . AACS 65985 broad.mit.edu 36 12 124124433 124124433 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023928 exon2 c.G192T p.E64D . . . TMEM132B 114795 broad.mit.edu 36 12 124704391 124704391 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052907 exon9 c.A2419C p.N807H . . . DUSP16 80824 broad.mit.edu 36 12 12521518 12521518 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030640 exon7 c.G1514A p.R505Q . . . TMEM132D 121256 broad.mit.edu 36 12 128125227 128125227 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133448 exon9 c.G2446A p.V816I . . . TMEM132D 121256 broad.mit.edu 36 12 128129196 128129196 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133448 exon8 c.C1951T p.L651F . . . DDX47 51202 broad.mit.edu 36 12 12866895 12866895 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201224 exon6 c.C595T p.R199W . . . FZD10 11211 broad.mit.edu 36 12 129214473 129214473 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007197 exon1 c.G1033A p.E345K . . . PIWIL1 9271 broad.mit.edu 36 12 129396364 129396364 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004764 exon4 c.G304T p.E102X . . . GPR133 283383 broad.mit.edu 36 12 130135073 130135073 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198827 exon15 c.C1583T p.A528V . . . EP400 57634 broad.mit.edu 36 12 131082568 131082568 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015409 exon30 c.G5869T p.D1957Y . . . EP400 57634 broad.mit.edu 36 12 131113118 131113118 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015409 exon47 c.G8250A p.T2750T . . . POLE 5426 broad.mit.edu 36 12 131752098 131752098 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006231 exon21 c.G2331T p.K777N . . . POLE 5426 broad.mit.edu 36 12 131762400 131762400 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006231 exon11 c.T1100C p.F367S . . . ZNF84 7637 broad.mit.edu 36 12 132145062 132145062 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127372 exon5 c.G1688T p.R563I . . . ZNF10 7556 broad.mit.edu 36 12 132243235 132243235 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015394 exon5 c.C1330T p.R444X . . . ZNF10 7556 broad.mit.edu 36 12 132243576 132243576 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015394 exon5 c.C1671T p.T557T . . . GRIN2B 2904 broad.mit.edu 36 12 13616090 13616090 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000834 exon10 c.C2086T p.R696C . . . GUCY2C 2984 broad.mit.edu 36 12 14721109 14721109 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004963 exon7 c.G894A p.T298T . . . HIST4H4 121504 broad.mit.edu 36 12 14815133 14815133 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175054 exon1 c.C153A p.I51I . . . PTPRO 5800 broad.mit.edu 36 12 15548263 15548263 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002848 exon6 c.T1260G p.F420L . . . RERGL 79785 broad.mit.edu 36 12 18129878 18129878 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024730 exon4 c.G129A p.K43K . . . PIK3C2G 5288 broad.mit.edu 36 12 18326349 18326349 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004570 exon2 c.G67T p.E23X . . . PIK3C2G 5288 broad.mit.edu 36 12 18540275 18540275 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004570 exon20 c.T2683G p.F895V . . . CACNA2D4 93589 broad.mit.edu 36 12 1854086 1854086 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172364 exon18 c.T1823G p.I608S . . . SLCO1B3 28234 broad.mit.edu 36 12 20927738 20927738 + Silent SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019844 exon12 c.A1617C p.A539A . . . SLCO1B1 10599 broad.mit.edu 36 12 21216988 21216988 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006446 exon3 c.A222C p.E74D . . . GOLT1B 51026 broad.mit.edu 36 12 21552680 21552680 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016072 exon3 c.C214A p.L72M . . . GYS2 2998 broad.mit.edu 36 12 21607454 21607454 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021957 exon6 c.G916T p.D306Y . . . SLC6A13 6540 broad.mit.edu 36 12 216627 216627 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190997 exon4 c.C378A p.I126I . . . ABCC9 10060 broad.mit.edu 36 12 21970174 21970174 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020297 exon3 c.C375T p.I125I . . . ST8SIA1 6489 broad.mit.edu 36 12 22331417 22331417 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003034 exon2 c.T314C p.M105T . . . KIAA0528 9847 broad.mit.edu 36 12 22498226 22498226 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014802 exon24 c.T2742C p.G914G . . . KIAA0528 9847 broad.mit.edu 36 12 22568732 22568732 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014802 exon6 c.G542A p.R181Q . . . SOX5 6660 broad.mit.edu 36 12 23580694 23580694 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152989 exon17 c.C1909T p.R637C . . . CASC1 55259 broad.mit.edu 36 12 25152912 25152912 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001082973 exon15 c.C1988A p.S663Y . . . CASC1 55259 broad.mit.edu 36 12 25152992 25152992 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001082973 exon15 c.G1908T p.E636D . . . KRAS 3845 broad.mit.edu 36 12 25269914 25269914 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004985 exon4 c.A351C p.K117N KRAS,large_intestine,NS,Substitution - Missense,0 . . IFLTD1 160492 broad.mit.edu 36 12 25590613 25590613 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145727 exon2 c.T201G p.F67L . . . IFLTD1 160492 broad.mit.edu 36 12 25593699 25593699 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145728 exon3 c.G138T p.K46N . . . CACNA1C 775 broad.mit.edu 36 12 2588073 2588073 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129842 exon27 c.C3492T p.F1164F . . . BHLHE41 79365 broad.mit.edu 36 12 26167843 26167843 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030762 exon4 c.T333C p.I111I . . . ITPR2 3709 broad.mit.edu 36 12 26530314 26530314 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002223 exon41 c.G5801A p.R1934Q . . . ITPR2 3709 broad.mit.edu 36 12 26538445 26538445 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002223 exon39 c.G5278A p.D1760N . . . ITPR2 3709 broad.mit.edu 36 12 26594482 26594482 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002223 exon37 c.G5038T p.E1680X . . . ITPR2 3709 broad.mit.edu 36 12 26703391 26703391 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002223 exon16 c.G1808T p.R603I . . . TM7SF3 51768 broad.mit.edu 36 12 27047581 27047581 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016551 exon2 c.A101C p.E34A . . . FOXM1 2305 broad.mit.edu 36 12 2851615 2851615 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_202003 exon3 c.C562T p.R188X . . . KDM5A 5927 broad.mit.edu 36 12 287192 287192 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042603 exon23 c.G3619T p.E1207X . . . ERGIC2 51290 broad.mit.edu 36 12 29385377 29385377 + Silent SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016570 exon14 c.T1113G p.L371L . . . OVCH1 341350 broad.mit.edu 36 12 29488369 29488369 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183378 exon24 c.G2993T p.R998I . . . OVCH1 341350 broad.mit.edu 36 12 29495565 29495565 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183378 exon22 c.A2735G p.H912R . . . TMTC1 83857 broad.mit.edu 36 12 29580475 29580475 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193451 exon11 c.T1719G p.D573E . . . IPO8 10526 broad.mit.edu 36 12 30697204 30697204 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006390 exon18 c.G2038T p.E680X . . . IPO8 10526 broad.mit.edu 36 12 30718201 30718201 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006390 exon8 c.G899A p.G300D . . . IPO8 10526 broad.mit.edu 36 12 30724698 30724698 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006390 exon5 c.T624G p.F208L . . . KDM5A 5927 broad.mit.edu 36 12 311323 311323 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042603 exon13 c.T1696A p.F566I . . . SYT10 341359 broad.mit.edu 36 12 33451488 33451488 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198992 exon3 c.G580T p.E194X . . . ALG10 84920 broad.mit.edu 36 12 34066960 34066960 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032834 exon1 c.C159A p.F53L . . . PRMT8 56341 broad.mit.edu 36 12 3533080 3533080 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019854 exon4 c.C420T p.I140I . . . KIF21A 55605 broad.mit.edu 36 12 38021163 38021163 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173465 exon14 c.C1883T p.A628V . . . KIF21A 55605 broad.mit.edu 36 12 38048020 38048020 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173465 exon4 c.C532A p.H178N . . . ABCD2 225 broad.mit.edu 36 12 38297186 38297186 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005164 exon2 c.A991T p.N331Y . . . ABCD2 225 broad.mit.edu 36 12 38298984 38298984 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005164 exon1 c.A701G p.D234G . . . ARID2 196528 broad.mit.edu 36 12 44529005 44529005 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152641 exon13 c.T1700G p.F567C . . . SRSF2IP 9169 broad.mit.edu 36 12 44602998 44602998 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004719 exon13 c.G4113A p.S1371S . . . AKAP3 10566 broad.mit.edu 36 12 4606573 4606573 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006422 exon4 c.G1756T p.E586X . . . SENP1 29843 broad.mit.edu 36 12 46754587 46754587 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014554 exon8 c.T727G p.S243A . . . PFKM 5213 broad.mit.edu 36 12 46812973 46812973 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166686 exon7 c.G506A p.R169Q . . . C12orf54 121273 broad.mit.edu 36 12 47173010 47173010 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152319 exon7 c.C207A p.C69X . . . OR8S1 341568 broad.mit.edu 36 12 47205977 47205977 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005203 exon1 c.C296T p.A99V . . . DHH 50846 broad.mit.edu 36 12 47774527 47774527 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021044 exon1 c.C36T p.C12C . . . KCNH3 23416 broad.mit.edu 36 12 48234533 48234533 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012284 exon11 c.G2065A p.A689T . . . BCDIN3D 144233 broad.mit.edu 36 12 48518842 48518842 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181708 exon2 c.T458G p.F153C . . . SMARCD1 6602 broad.mit.edu 36 12 48768615 48768615 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139071 exon6 c.C699A p.F233L . . . DIP2B 57609 broad.mit.edu 36 12 49411521 49411521 + Silent SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173602 exon31 c.T3744G p.T1248T . . . TMPRSS12 283471 broad.mit.edu 36 12 49567358 49567358 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182559 exon5 c.G842T p.R281I . . . KCNA5 3741 broad.mit.edu 36 12 5024070 5024070 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002234 exon1 c.G496A p.D166N . . . KRT6A 3853 broad.mit.edu 36 12 51171180 51171180 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005554 exon3 c.T799G p.F267V . . . KRT3 3850 broad.mit.edu 36 12 51472797 51472797 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057088 exon4 c.G988T p.D330Y . . . SP7 121340 broad.mit.edu 36 12 52008203 52008203 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_152860 exon2 c.G1290A p.E430E . . . SMUG1 23583 broad.mit.edu 36 12 52863795 52863795 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014311 exon3 c.G197A p.R66H . . . ZNF385A 25946 broad.mit.edu 36 12 53055915 53055915 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015481 exon2 c.C178A p.Q60K . . . GTSF1 121355 broad.mit.edu 36 12 53151288 53151288 + Silent SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144594 exon2 c.T12G p.T4T . . . OR6C1 390321 broad.mit.edu 36 12 54000842 54000842 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005182 exon1 c.C192T p.F64F . . . OR6C75 390323 broad.mit.edu 36 12 54045939 54045939 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005497 exon1 c.A778G p.T260A . . . OR6C75 390323 broad.mit.edu 36 12 54046087 54046087 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005497 exon1 c.C926A p.S309Y . . . OR6C65 403282 broad.mit.edu 36 12 54080913 54080913 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005518 exon1 c.C334A p.L112I . . . OR6C2 341416 broad.mit.edu 36 12 54132729 54132729 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054105 exon1 c.T465C p.V155V . . . ITGA7 3679 broad.mit.edu 36 12 54376350 54376350 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144997 exon13 c.G1592T p.S531I . . . IKZF4 64375 broad.mit.edu 36 12 54703801 54703801 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022465 exon2 c.C167A p.S56Y . . . PAN2 9924 broad.mit.edu 36 12 55004532 55004532 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166279 exon12 c.C1741A p.L581I . . . STAT2 6773 broad.mit.edu 36 12 55023556 55023556 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198332 exon24 c.G2428T p.E810X . . . STAT2 6773 broad.mit.edu 36 12 55023902 55023902 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198332 exon23 c.G2375T p.R792I . . . ATP5B 506 broad.mit.edu 36 12 55320063 55320063 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001686 exon8 c.G1255A p.D419N . . . MYO1A 4640 broad.mit.edu 36 12 55728297 55728297 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005379 exon2 c.G78T p.K26N . . . INHBC 3626 broad.mit.edu 36 12 56129421 56129421 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005538 exon2 c.C408A p.F136L . . . ARHGAP9 64333 broad.mit.edu 36 12 56155446 56155446 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080156 exon10 c.C895T p.R299W . . . KIF5A 3798 broad.mit.edu 36 12 56249057 56249057 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004984 exon9 c.G759T p.K253N . . . PIP4K2C 79837 broad.mit.edu 36 12 56279212 56279212 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146258 exon5 c.G611A p.R204H . . . ARHGEF25 115557 broad.mit.edu 36 12 56293077 56293077 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111270 exon3 c.C312T p.G104G . . . AGAP2 116986 broad.mit.edu 36 12 56412924 56412924 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014770 exon6 c.G647A p.G216E . . . CDK4 1019 broad.mit.edu 36 12 56431079 56431079 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000075 exon4 c.G416A p.R139Q . . . METTL1 4234 broad.mit.edu 36 12 56451187 56451187 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005371 exon2 c.A231C p.Q77H . . . LRIG3 121227 broad.mit.edu 36 12 57568417 57568417 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153377 exon7 c.G908A p.S303N . . . FAM19A2 338811 broad.mit.edu 36 12 60433717 60433717 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178539 exon4 c.C337T p.R113W . . . MON2 23041 broad.mit.edu 36 12 61236068 61236068 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015026 exon25 c.C3238T p.R1080X . . . DPY19L2 283417 broad.mit.edu 36 12 62260796 62260796 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173812 exon19 c.C1813A p.L605I . . . TMEM5 10329 broad.mit.edu 36 12 62482268 62482268 + De_novo_Start_OutOfFrame SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014254 exon4 c.T559G p.L187V . . . SRGAP1 57522 broad.mit.edu 36 12 62822534 62822534 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020762 exon22 c.C3073T p.R1025X . . . C12orf56 115749 broad.mit.edu 36 12 63032975 63032975 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170633 exon2 c.T381C p.F127F . . . TMBIM4 51643 broad.mit.edu 36 12 64849915 64849915 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016056 exon1 c.G84A p.V28V . . . IFFO1 25900 broad.mit.edu 36 12 6534709 6534709 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193457 exon1 c.C748A p.R250R . . . CHD4 1108 broad.mit.edu 36 12 6570953 6570953 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001273 exon22 c.G3280A p.E1094K . . . DYRK2 8445 broad.mit.edu 36 12 66338040 66338040 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003583 exon2 c.C867T p.S289S . . . IFNG 3458 broad.mit.edu 36 12 66839558 66839558 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000619 exon1 c.G105T p.K35N . . . IL22 50616 broad.mit.edu 36 12 66932846 66932846 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020525 exon2 c.C217T p.R73C . . . MDM1 56890 broad.mit.edu 36 12 66975322 66975322 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017440 exon14 c.G2124T p.E708D . . . NUP107 57122 broad.mit.edu 36 12 67390089 67390089 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020401 exon10 c.A839G p.E280G . . . NUP107 57122 broad.mit.edu 36 12 67413639 67413639 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020401 exon24 c.T2242G p.L748V . . . NUP107 57122 broad.mit.edu 36 12 67421945 67421945 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_020401 exon27 c.C2588T p.T863M . . . BEST3 144453 broad.mit.edu 36 12 68356987 68356987 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032735 exon7 c.C843A p.F281L . . . KCNMB4 27345 broad.mit.edu 36 12 69110694 69110694 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014505 exon3 c.C627A p.F209L . . . TBC1D15 64786 broad.mit.edu 36 12 70574391 70574391 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022771 exon7 c.G677T p.R226I . . . TBC1D15 64786 broad.mit.edu 36 12 70577953 70577953 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146214 exon11 c.G1172T p.R391I . . . TRHDE 29953 broad.mit.edu 36 12 71058045 71058045 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013381 exon3 c.C1057T p.R353X . . . TRHDE 29953 broad.mit.edu 36 12 71255385 71255385 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013381 exon11 c.G2080T p.D694Y . . . GLIPR1L1 256710 broad.mit.edu 36 12 74027769 74027769 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152779 exon3 c.C521A p.A174E . . . CD163L1 283316 broad.mit.edu 36 12 7422942 7422942 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174941 exon9 c.C2270A p.S757Y . . . NAP1L1 4673 broad.mit.edu 36 12 74739846 74739846 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004537 exon6 c.C428T p.S143L . . . CD163 9332 broad.mit.edu 36 12 7546346 7546346 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203416 exon2 c.C128A p.S43Y . . . SLC2A14 144195 broad.mit.edu 36 12 7865085 7865085 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153449 exon9 c.C1037A p.S346Y . . . MYF5 4617 broad.mit.edu 36 12 79635075 79635075 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005593 exon1 c.G102A p.P34P . . . TMTC2 160335 broad.mit.edu 36 12 81775338 81775338 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152588 exon2 c.A502C p.T168P . . . TMTC2 160335 broad.mit.edu 36 12 81814079 81814079 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152588 exon3 c.G1006T p.E336X . . . LRRIQ1 84125 broad.mit.edu 36 12 83962695 83962695 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032165 exon4 c.G313T p.E105X . . . LRRIQ1 84125 broad.mit.edu 36 12 84045876 84045876 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079910 exon18 c.G4143T p.K1381N . . . LRRIQ1 84125 broad.mit.edu 36 12 84147479 84147479 + Missense_Mutation SNP C T T rs1395676 byCluster;byFrequency;byHapMap TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079910 exon25 c.C4876T p.R1626W . . . RASSF9 9182 broad.mit.edu 36 12 84722867 84722867 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005447 exon2 c.A1052G p.Q351R . . . RASSF9 9182 broad.mit.edu 36 12 84723423 84723423 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005447 exon2 c.C496T p.R166W . . . NTS 4922 broad.mit.edu 36 12 84800233 84800233 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006183 exon4 c.G462T p.E154D . . . MGAT4C 25834 broad.mit.edu 36 12 84907343 84907343 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013244 exon5 c.T113G p.F38C . . . CLEC4E 26253 broad.mit.edu 36 12 8581071 8581071 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014358 exon4 c.C279A p.F93L . . . WNK1 65125 broad.mit.edu 36 12 864916 864916 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184985 exon19 c.C5465A p.S1822Y . . . CEP290 80184 broad.mit.edu 36 12 87000961 87000961 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025114 exon37 c.G4990T p.E1664X . . . KERA 11081 broad.mit.edu 36 12 89973480 89973480 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007035 exon2 c.C710A p.P237H . . . A2M 2 broad.mit.edu 36 12 9156055 9156055 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000014 exon4 c.C450T p.S150S . . . PZP 5858 broad.mit.edu 36 12 9204926 9204926 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002864 exon23 c.G2842T p.E948X . . . CRADD 8738 broad.mit.edu 36 12 92768097 92768097 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003805 exon3 c.G519A p.K173K . . . CCDC41 51134 broad.mit.edu 36 12 93287937 93287937 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016122 exon9 c.G940T p.E314X . . . CCDC41 51134 broad.mit.edu 36 12 93329648 93329648 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016122 exon4 c.G280T p.E94X . . . USP44 84101 broad.mit.edu 36 12 94451332 94451332 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042403 exon2 c.T832G p.L278V . . . TMPO 7112 broad.mit.edu 36 12 97450817 97450817 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003276 exon4 c.A651G p.G217G . . . SLC25A3 5250 broad.mit.edu 36 12 97519176 97519176 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002635 exon7 c.G911T p.R304I . . . APAF1 317 broad.mit.edu 36 12 97617351 97617351 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013229 exon17 c.G2306T p.S769I . . . APAF1 317 broad.mit.edu 36 12 97621408 97621408 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013229 exon18 c.G2562A p.E854E . . . CD69 969 broad.mit.edu 36 12 9800200 9800200 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001781 exon2 c.C147A p.V49V . . . ANKS1B 56899 broad.mit.edu 36 12 98164716 98164716 + De_novo_Start_OutOfFrame SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152788 exon13 c.T1814G p.F605C . . . KLRF1 51348 broad.mit.edu 36 12 9877285 9877285 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016523 exon3 c.C304A p.L102I . . . UHRF1BP1L 23074 broad.mit.edu 36 12 98977330 98977330 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015054 exon14 c.G1856A p.R619Q . . . DEPDC4 120863 broad.mit.edu 36 12 99180191 99180191 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152317 exon3 c.C682A p.L228I . . . SCYL2 55681 broad.mit.edu 36 12 99253558 99253558 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017988 exon15 c.G1887T p.M629I . . . ANO4 121601 broad.mit.edu 36 12 99860385 99860385 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178826 exon4 c.G292T p.E98X . . . PLEKHA9 51054 broad.mit.edu 36 12 43853773 43853773 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . TMTC4 84899 broad.mit.edu 36 13 100055342 100055342 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032813 exon19 c.C2190A p.I730I . . . NALCN 259232 broad.mit.edu 36 13 100827065 100827065 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052867 exon6 c.G631T p.D211Y . . . FGF14 2259 broad.mit.edu 36 13 101177131 101177131 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175929 exon4 c.G454T p.E152X . . . TPP2 7174 broad.mit.edu 36 13 102087484 102087484 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003291 exon14 c.C1730A p.S577X . . . TPP2 7174 broad.mit.edu 36 13 102093670 102093670 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003291 exon17 c.C2118A p.F706L . . . MYO16 23026 broad.mit.edu 36 13 108415143 108415143 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198950 exon20 c.T2261C p.I754T . . . MYO16 23026 broad.mit.edu 36 13 108551198 108551198 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198950 exon28 c.C3400T p.R1134X . . . COL4A1 1282 broad.mit.edu 36 13 109662959 109662959 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001845 exon5 c.C287T p.P96L . . . ARHGEF7 8874 broad.mit.edu 36 13 110736575 110736575 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001113512 exon16 c.C1944T p.F648F . . . ATP11A 23250 broad.mit.edu 36 13 112525720 112525720 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015205 exon9 c.C786A p.I262I . . . MCF2L 23263 broad.mit.edu 36 13 112778467 112778467 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024979 exon12 c.C1507A p.L503I . . . F7 2155 broad.mit.edu 36 13 112816075 112816075 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000131 exon4 c.C300A p.F100L . . . F7 2155 broad.mit.edu 36 13 112818003 112818003 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000131 exon6 c.C459T p.N153N . . . PCID2 55795 broad.mit.edu 36 13 112902749 112902749 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018386 exon2 c.G119A p.R40Q . . . DCUN1D2 55208 broad.mit.edu 36 13 113176490 113176490 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014283 exon4 c.T470G p.F157C . . . FAM70B 348013 broad.mit.edu 36 13 113644827 113644827 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182614 exon2 c.G75A p.S25S . . . RASA3 22821 broad.mit.edu 36 13 113813401 113813401 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007368 exon5 c.A437C p.K146T . . . UPF3A 65110 broad.mit.edu 36 13 114082461 114082461 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023011 exon8 c.A891T p.K297N . . . TPTE2 93492 broad.mit.edu 36 13 18937687 18937687 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001141968 exon7 c.G197A p.R66Q . . . TPTE2 93492 broad.mit.edu 36 13 18965596 18965596 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001141968 exon4 c.G57A p.A19A . . . XPO4 64328 broad.mit.edu 36 13 20255898 20255898 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022459 exon23 c.T3419G p.F1140C . . . SACS 26278 broad.mit.edu 36 13 22804348 22804348 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014363 exon10 c.G11667T p.Q3889H . . . SACS 26278 broad.mit.edu 36 13 22808439 22808439 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014363 exon10 c.G7576T p.E2526X . . . SACS 26278 broad.mit.edu 36 13 22810095 22810095 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_014363 exon10 c.G5920T p.E1974X . . . ATP12A 479 broad.mit.edu 36 13 24157487 24157487 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185085 exon3 c.G204T p.E68D . . . ATP12A 479 broad.mit.edu 36 13 24181563 24181563 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185085 exon18 c.G2573A p.R858H . . . RNF17 56163 broad.mit.edu 36 13 24272666 24272666 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184993 exon13 c.G1752T p.Q584H . . . RNF17 56163 broad.mit.edu 36 13 24331165 24331165 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184993 exon26 c.G3625T p.E1209X . . . RPL21 6144 broad.mit.edu 36 13 26725958 26725958 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000982 exon2 c.C45A p.F15L . . . FLT1 2321 broad.mit.edu 36 13 27775417 27775417 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002019 exon30 c.G3904A p.E1302K . . . FLT1 2321 broad.mit.edu 36 13 27857071 27857071 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002019 exon14 c.G2067A p.E689E . . . USPL1 10208 broad.mit.edu 36 13 30129710 30129710 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005800 exon9 c.G1496T p.R499I . . . HSPH1 10808 broad.mit.edu 36 13 30623253 30623253 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006644 exon7 c.G739T p.E247X . . . B3GALTL 145173 broad.mit.edu 36 13 30748891 30748891 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194318 exon10 c.A833C p.K278T . . . B3GALTL 145173 broad.mit.edu 36 13 30801690 30801690 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194318 exon15 c.C1382T p.S461L . . . RXFP2 122042 broad.mit.edu 36 13 31274345 31274345 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166058 exon17 c.C1996A p.L666I . . . FRY 10129 broad.mit.edu 36 13 31589601 31589601 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023037 exon4 c.A455C p.K152T . . . FRY 10129 broad.mit.edu 36 13 31643193 31643193 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023037 exon18 c.A1937C p.N646T . . . PDS5B 23047 broad.mit.edu 36 13 32204319 32204319 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015032 exon20 c.G2205A p.A735A . . . KL 9365 broad.mit.edu 36 13 32527245 32527245 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004795 exon3 c.C1392T p.F464F . . . NBEA 26960 broad.mit.edu 36 13 34542979 34542979 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015678 exon10 c.A1561G p.T521A . . . NBEA 26960 broad.mit.edu 36 13 35139662 35139662 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015678 exon56 c.T8553G p.I2851M . . . SOHLH2 54937 broad.mit.edu 36 13 35641178 35641178 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017826 exon11 c.C1271T p.A424V . . . SOHLH2 54937 broad.mit.edu 36 13 35646698 35646698 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017826 exon8 c.G796A p.E266K . . . SOHLH2 54937 broad.mit.edu 36 13 35662118 35662118 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017826 exon6 c.C606A p.I202I . . . C13orf36 400120 broad.mit.edu 36 13 36167237 36167237 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203451 exon2 c.T22A p.S8T . . . FAM48A 55578 broad.mit.edu 36 13 36491528 36491528 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017569 exon22 c.C1826A p.P609Q . . . CSNK1A1L 122011 broad.mit.edu 36 13 36577085 36577085 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145203 exon1 c.C309A p.F103L . . . POSTN 10631 broad.mit.edu 36 13 37041945 37041945 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135934 exon18 c.A2112C p.K704N . . . FREM2 341640 broad.mit.edu 36 13 38162954 38162954 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207361 exon1 c.C3473A p.P1158H . . . NHLRC3 387921 broad.mit.edu 36 13 38519980 38519980 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017370 exon6 c.G760A p.A254T . . . KBTBD6 89890 broad.mit.edu 36 13 40603574 40603574 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152903 exon1 c.C1074T p.C358C . . . KIAA0564 23078 broad.mit.edu 36 13 41191845 41191845 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015058 exon26 c.C2998T p.R1000X . . . KIAA0564 23078 broad.mit.edu 36 13 41283401 41283401 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015058 exon17 c.G2023T p.E675X . . . DGKH 160851 broad.mit.edu 36 13 41670653 41670653 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178009 exon18 c.C2207T p.S736L . . . DGKH 160851 broad.mit.edu 36 13 41691871 41691871 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178009 exon28 c.G3383A p.R1128Q . . . EPSTI1 94240 broad.mit.edu 36 13 42442765 42442765 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033255 exon2 c.G230T p.R77I . . . ZC3H13 23091 broad.mit.edu 36 13 45514331 45514331 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015070 exon4 c.G308A p.R103Q . . . C13orf18 80183 broad.mit.edu 36 13 45840917 45840917 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025113 exon4 c.G570A p.S190S . . . CAB39L 81617 broad.mit.edu 36 13 48849200 48849200 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030925 exon3 c.A180G p.E60E . . . PHF11 51131 broad.mit.edu 36 13 48990283 48990283 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040443 exon4 c.T453G p.I151M . . . RCBTB1 55213 broad.mit.edu 36 13 49013898 49013898 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018191 exon11 c.C1239T p.I413I . . . TRIM13 10206 broad.mit.edu 36 13 49484914 49484914 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005798 exon3 c.G837T p.K279N . . . NEK3 4752 broad.mit.edu 36 13 51605881 51605881 + Missense_Mutation SNP C T T rs34076988 byCluster TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146099 exon14 c.G1330A p.D444N . . . PCDH17 27253 broad.mit.edu 36 13 57138888 57138888 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040429 exon3 c.A2717C p.K906T . . . DIAPH3 81624 broad.mit.edu 36 13 59246347 59246347 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030932 exon21 c.C2507A p.P836H . . . PCDH20 64881 broad.mit.edu 36 13 60884054 60884054 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022843 exon2 c.A2179C p.K727Q . . . PCDH9 5101 broad.mit.edu 36 13 66697572 66697572 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020403 exon2 c.G3002A p.G1001D . . . DIS3 22894 broad.mit.edu 36 13 72244315 72244315 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128226 exon10 c.G1396A p.E466K . . . LMO7 4008 broad.mit.edu 36 13 75185330 75185330 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005358 exon3 c.G237T p.E79D . . . LMO7 4008 broad.mit.edu 36 13 75307475 75307475 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015842 exon15 c.C2633A p.S878Y . . . LMO7 4008 broad.mit.edu 36 13 75308564 75308564 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015842 exon16 c.C2665T p.H889Y . . . CLN5 1203 broad.mit.edu 36 13 76467311 76467311 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006493 exon2 c.C433T p.R145X . . . MYCBP2 23077 broad.mit.edu 36 13 76653925 76653925 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015057 exon33 c.C4853A p.S1618X . . . MYCBP2 23077 broad.mit.edu 36 13 76751005 76751005 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015057 exon4 c.G637T p.E213X . . . SCEL 8796 broad.mit.edu 36 13 77031972 77031972 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160706 exon4 c.G194A p.R65Q . . . SCEL 8796 broad.mit.edu 36 13 77075262 77075262 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001160706 exon17 c.A1022C p.N341T . . . EDNRB 1910 broad.mit.edu 36 13 77373214 77373214 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122659 exon4 c.T931C p.L311L . . . RBM26 64062 broad.mit.edu 36 13 78827466 78827466 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022118 exon12 c.G1744T p.E582X . . . SLITRK1 114798 broad.mit.edu 36 13 83353339 83353339 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052910 exon1 c.T305G p.F102C . . . SLITRK6 84189 broad.mit.edu 36 13 85266776 85266776 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032229 exon2 c.C1869A p.F623L . . . SLITRK6 84189 broad.mit.edu 36 13 85268277 85268277 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032229 exon2 c.C368A p.S123Y . . . DZIP1 22873 broad.mit.edu 36 13 95039452 95039452 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014934 exon18 c.A1927C p.N643H . . . DZIP1 22873 broad.mit.edu 36 13 95061742 95061742 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014934 exon12 c.G1321T p.D441Y . . . UGGT2 55757 broad.mit.edu 36 13 95338200 95338200 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020121 exon26 c.G2985T p.K995N . . . IPO5 3843 broad.mit.edu 36 13 97435735 97435735 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002271 exon6 c.C285A p.V95V . . . DOCK9 23348 broad.mit.edu 36 13 98352690 98352690 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130050 exon12 c.T1233G p.I411M . . . GPR183 1880 broad.mit.edu 36 13 98746120 98746120 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004951 exon2 c.G281A p.G94D . . . DYNC1H1 1778 broad.mit.edu 36 14 101536484 101536484 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001376 exon18 c.C4069T p.R1357X . . . AHNAK2 113146 broad.mit.edu 36 14 104482042 104482042 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138420 exon7 c.C10791T p.V3597V . . . OR4K2 390431 broad.mit.edu 36 14 19414506 19414506 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005501 exon1 c.G240T p.K80N . . . OR11H6 122748 broad.mit.edu 36 14 19761714 19761714 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004480 exon1 c.C6A p.F2L . . . OR11H6 122748 broad.mit.edu 36 14 19762222 19762222 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004480 exon1 c.C514A p.L172I . . . OR11H4 390442 broad.mit.edu 36 14 19780904 19780904 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004479 exon1 c.C114A p.F38L . . . OR11H4 390442 broad.mit.edu 36 14 19781000 19781000 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004479 exon1 c.C210A p.Y70X . . . PARP2 10038 broad.mit.edu 36 14 19883035 19883035 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042618 exon2 c.C151T p.P51S . . . TEP1 7011 broad.mit.edu 36 14 19933568 19933568 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007110 exon12 c.G1809T p.K603N . . . RNASE10 338879 broad.mit.edu 36 14 20048912 20048912 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012975 exon1 c.G442T p.V148F . . . RNASE11 122651 broad.mit.edu 36 14 20122341 20122341 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145250 exon3 c.G133T p.E45X . . . EDDM3A 10876 broad.mit.edu 36 14 20285751 20285751 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006683 exon2 c.G172T p.E58X . . . SLC39A2 29986 broad.mit.edu 36 14 20539090 20539090 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014579 exon4 c.G442A p.E148K . . . RPGRIP1 57096 broad.mit.edu 36 14 20863279 20863279 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020366 exon15 c.G2264A p.R755H . . . SALL2 6297 broad.mit.edu 36 14 21061885 21061885 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005407 exon2 c.C1817T p.A606V . . . MMP14 4323 broad.mit.edu 36 14 22381511 22381511 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004995 exon4 c.C433T p.R145C . . . LRP10 26020 broad.mit.edu 36 14 22416218 22416218 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014045 exon7 c.G1784A p.G595D . . . ACIN1 22985 broad.mit.edu 36 14 22598382 22598382 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164816 exon12 c.C1660T p.R554W . . . CMTM5 116173 broad.mit.edu 36 14 22918089 22918089 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_138460 exon3 c.C289T p.R97C . . . MYH7 4625 broad.mit.edu 36 14 22956630 22956630 + Silent SNP G A A rs57680382 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000257 exon31 c.C4275T p.I1425I . . . AP1G2 8906 broad.mit.edu 36 14 23099386 23099386 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003917 exon20 c.C2075T p.A692V . . . MDP1 145553 broad.mit.edu 36 14 23753399 23753399 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199822 exon5 c.C360A p.F120L . . . RIPK3 11035 broad.mit.edu 36 14 23878235 23878235 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006871 exon3 c.C297T p.N99N . . . FOXG1 2290 broad.mit.edu 36 14 28307497 28307497 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005249 exon1 c.G1261A p.V421I . . . PRKD1 5587 broad.mit.edu 36 14 29169894 29169894 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002742 exon10 c.G1477A p.E493K . . . HEATR5A 25938 broad.mit.edu 36 14 30854770 30854770 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015473 exon21 c.C3296T p.A1099V . . . AKAP6 9472 broad.mit.edu 36 14 32116084 32116084 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004274 exon5 c.T2354C p.V785A . . . AKAP6 9472 broad.mit.edu 36 14 32274797 32274797 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004274 exon11 c.G3330T p.K1110N . . . KIAA0391 9692 broad.mit.edu 36 14 34662906 34662906 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014672 exon2 c.A704G p.D235G . . . RALGAPA1 253959 broad.mit.edu 36 14 35211927 35211927 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194301 exon24 c.T3452G p.L1151R . . . RALGAPA1 253959 broad.mit.edu 36 14 35287601 35287601 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194301 exon10 c.C1192T p.R398C . . . PNN 5411 broad.mit.edu 36 14 38720475 38720475 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002687 exon9 c.G1811A p.R604H . . . FSCB 84075 broad.mit.edu 36 14 44045012 44045012 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032135 exon1 c.C929T p.A310V . . . MDGA2 161357 broad.mit.edu 36 14 46394090 46394090 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182830 exon15 c.C1876A p.L626I . . . SDCCAG1 9147 broad.mit.edu 36 14 49368729 49368729 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004713 exon9 c.A752C p.K251T . . . PYGL 5836 broad.mit.edu 36 14 50448716 50448716 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002863 exon14 c.A1676G p.N559S . . . PYGL 5836 broad.mit.edu 36 14 50453479 50453479 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002863 exon8 c.T950C p.F317S . . . C14orf166 51637 broad.mit.edu 36 14 51540906 51540906 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016039 exon8 c.C657A p.I219I . . . NID2 22795 broad.mit.edu 36 14 51566150 51566150 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007361 exon10 c.G2266T p.D756Y . . . NID2 22795 broad.mit.edu 36 14 51590692 51590692 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007361 exon4 c.G865A p.A289T . . . ERO1L 30001 broad.mit.edu 36 14 52194459 52194459 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014584 exon11 c.G734T p.R245I . . . FERMT2 10979 broad.mit.edu 36 14 52486931 52486931 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134999 exon2 c.A106G p.T36A . . . SOCS4 122809 broad.mit.edu 36 14 54580202 54580202 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080867 exon2 c.C690T p.S230S . . . FBXO34 55030 broad.mit.edu 36 14 54887857 54887857 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152231 exon2 c.C996A p.V332V . . . MUDENG 55745 broad.mit.edu 36 14 56811043 56811043 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018229 exon2 c.C403A p.L135I . . . C14orf105 55195 broad.mit.edu 36 14 57027467 57027467 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018168 exon2 c.G299T p.R100I . . . SLC35F4 341880 broad.mit.edu 36 14 57106284 57106284 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080455 exon6 c.C1209A p.L403L . . . C14orf37 145407 broad.mit.edu 36 14 57668185 57668185 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001872 exon4 c.G1629T p.M543I . . . ARID4A 5926 broad.mit.edu 36 14 57864765 57864765 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023000 exon9 c.C640T p.R214X . . . JKAMP 51528 broad.mit.edu 36 14 59031588 59031588 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098625 exon4 c.T333G p.I111M . . . C14orf135 64430 broad.mit.edu 36 14 59662142 59662142 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022495 exon9 c.T2413G p.L805V . . . C14orf39 317761 broad.mit.edu 36 14 60006024 60006024 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174978 exon8 c.G655A p.E219K . . . SIX6 4990 broad.mit.edu 36 14 60045954 60045954 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007374 exon1 c.C85T p.R29C . . . SIX4 51804 broad.mit.edu 36 14 60256677 60256677 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017420 exon2 c.C1103A p.S368Y . . . SIX4 51804 broad.mit.edu 36 14 60260489 60260489 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017420 exon1 c.G57T p.E19D . . . SLC38A6 145389 broad.mit.edu 36 14 60588273 60588273 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153811 exon14 c.A1066G p.T356A . . . KCNH5 27133 broad.mit.edu 36 14 62517498 62517498 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172376 exon6 c.G613A p.V205I . . . KCNH5 27133 broad.mit.edu 36 14 62537903 62537903 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172376 exon4 c.T158C p.I53T . . . KCNH5 27133 broad.mit.edu 36 14 62553349 62553349 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172375 exon2 c.C150A p.L50L . . . SYNE2 23224 broad.mit.edu 36 14 63666677 63666677 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015180 exon76 c.C14298T p.T4766T . . . ZBTB1 22890 broad.mit.edu 36 14 64059578 64059578 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014950 exon2 c.C1603T p.R535X . . . SPTB 6710 broad.mit.edu 36 14 64330152 64330152 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024858 exon13 c.C1982A p.S661Y . . . GPHN 10243 broad.mit.edu 36 14 66695922 66695922 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024218 exon18 c.C1775T p.A592V . . . TMEM229B 161145 broad.mit.edu 36 14 67010295 67010295 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182526 exon3 c.C99T p.F33F . . . ZFYVE26 23503 broad.mit.edu 36 14 67319271 67319271 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015346 exon21 c.C4351A p.L1451M . . . SMOC1 64093 broad.mit.edu 36 14 69559820 69559820 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001034852 exon11 c.G1194T p.K398N . . . ADAM21 8747 broad.mit.edu 36 14 69995159 69995159 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003813 exon1 c.C1190A p.P397H . . . ADAM21 8747 broad.mit.edu 36 14 69995442 69995442 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_003813 exon1 c.G1473T p.Q491H . . . ADAM21 8747 broad.mit.edu 36 14 69995759 69995759 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003813 exon1 c.T1790C p.L597S . . . PCNX 22990 broad.mit.edu 36 14 70505535 70505535 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014982 exon5 c.C559T p.L187L . . . PCNX 22990 broad.mit.edu 36 14 70581648 70581648 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014982 exon20 c.T3913G p.F1305V . . . RGS6 9628 broad.mit.edu 36 14 72009408 72009408 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004296 exon9 c.G612A p.R204R . . . RBM25 58517 broad.mit.edu 36 14 72608174 72608174 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021239 exon2 c.G72A p.P24P . . . PAPLN 89932 broad.mit.edu 36 14 72790374 72790374 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173462 exon11 c.C1173A p.A391A . . . ACOT4 122970 broad.mit.edu 36 14 73131742 73131742 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152331 exon3 c.C897T p.L299L . . . NPC2 10577 broad.mit.edu 36 14 74017187 74017187 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006432 exon4 c.C412A p.L138I . . . C14orf118 55668 broad.mit.edu 36 14 75732004 75732004 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017926 exon9 c.T1224C p.C408C . . . TMEM63C 57156 broad.mit.edu 36 14 76782714 76782714 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020431 exon18 c.C1545A p.V515V . . . TMEM63C 57156 broad.mit.edu 36 14 76785397 76785397 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020431 exon21 c.C1881T p.Y627Y . . . SAMD15 161394 broad.mit.edu 36 14 76913761 76913761 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010860 exon1 c.T247C p.S83P . . . C14orf145 145508 broad.mit.edu 36 14 80314033 80314033 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152446 exon15 c.G2322A p.E774E . . . C14orf145 145508 broad.mit.edu 36 14 80321575 80321575 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152446 exon14 c.G1628A p.R543Q . . . PTPN21 11099 broad.mit.edu 36 14 88008427 88008427 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007039 exon15 c.G2785T p.D929Y . . . PTPN21 11099 broad.mit.edu 36 14 88015026 88015026 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007039 exon13 c.G2502A p.P834P . . . TDP1 55775 broad.mit.edu 36 14 89499724 89499724 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008744 exon2 c.C513A p.V171V . . . CATSPERB 79820 broad.mit.edu 36 14 91205942 91205942 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024764 exon14 c.G1256A p.R419Q . . . TRIP11 9321 broad.mit.edu 36 14 91541626 91541626 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004239 exon11 c.T2447G p.F816C . . . GOLGA5 9950 broad.mit.edu 36 14 92355854 92355854 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005113 exon8 c.T1540C p.L514L . . . GOLGA5 9950 broad.mit.edu 36 14 92369367 92369367 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005113 exon10 c.G1867A p.E623K . . . KIAA1409 57578 broad.mit.edu 36 14 93154453 93154453 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020818 exon29 c.G3856T p.G1286C . . . KIAA1409 57578 broad.mit.edu 36 14 93173319 93173319 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020818 exon33 c.G5307T p.Q1769H . . . KIAA1409 57578 broad.mit.edu 36 14 93226223 93226223 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020818 exon46 c.G6679A p.E2227K . . . PPP4R4 57718 broad.mit.edu 36 14 93778489 93778489 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058237 exon11 c.C1257A p.C419X . . . PPP4R4 57718 broad.mit.edu 36 14 93803096 93803096 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058237 exon23 c.A2426C p.K809T . . . DICER1 23405 broad.mit.edu 36 14 94652725 94652725 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195573 exon9 c.G1570T p.E524X . . . C14orf177 283598 broad.mit.edu 36 14 98253282 98253282 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182560 exon4 c.C296T p.A99V . . . BCL11B 64919 broad.mit.edu 36 14 98710252 98710252 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138576 exon4 c.G2674A p.E892K . . . SETD3 84193 broad.mit.edu 36 14 98934859 98934859 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032233 exon13 c.C1695A p.S565S . . . POTEB 339010 broad.mit.edu 36 15 19336153 19336153 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207355 exon1 c.G148A p.D50N . . . NIPA2 81614 broad.mit.edu 36 15 20557811 20557811 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008860 exon7 c.T934C p.S312P . . . MAGEL2 54551 broad.mit.edu 36 15 21440757 21440757 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019066 exon1 c.C3226A p.Q1076K . . . C15orf2 23742 broad.mit.edu 36 15 22472761 22472761 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018958 exon1 c.A654C p.E218D . . . UBE3A 7337 broad.mit.edu 36 15 23166925 23166925 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130839 exon6 c.C1489T p.R497C . . . ATP10A 57194 broad.mit.edu 36 15 23483966 23483966 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024490 exon16 c.C3268T p.L1090L . . . ATP10A 57194 broad.mit.edu 36 15 23510032 23510032 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024490 exon10 c.C2226T p.F742F . . . OCA2 4948 broad.mit.edu 36 15 25941255 25941255 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000275 exon6 c.G633A p.P211P . . . TJP1 7082 broad.mit.edu 36 15 27806304 27806304 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175610 exon17 c.C2284T p.R762C . . . TJP1 7082 broad.mit.edu 36 15 27822272 27822272 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175610 exon9 c.G1016A p.R339Q . . . FAN1 22909 broad.mit.edu 36 15 28984531 28984531 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146095 exon2 c.A373G p.I125V . . . MTMR10 54893 broad.mit.edu 36 15 29027952 29027952 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017762 exon13 c.G1222T p.D408Y . . . ARHGAP11A 9824 broad.mit.edu 36 15 30716719 30716719 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014783 exon12 c.C2453A p.S818Y . . . FMN1 342184 broad.mit.edu 36 15 31146734 31146734 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103184 exon1 c.G644A p.S215N . . . RYR3 6263 broad.mit.edu 36 15 31642405 31642405 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon11 c.G1048A p.D350N . . . RYR3 6263 broad.mit.edu 36 15 31703386 31703386 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon20 c.C2444T p.P815L . . . RYR3 6263 broad.mit.edu 36 15 31741752 31741752 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon35 c.G4729A p.A1577T . . . RYR3 6263 broad.mit.edu 36 15 31802308 31802308 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon44 c.C6720A p.L2240L . . . AQR 9716 broad.mit.edu 36 15 32999845 32999845 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014691 exon14 c.G1201T p.E401X . . . FAM98B 283742 broad.mit.edu 36 15 36560935 36560935 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173611 exon7 c.G880A p.A294T . . . EIF2AK4 440275 broad.mit.edu 36 15 38047212 38047212 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013703 exon9 c.C1393T p.R465C . . . PAK6 56924 broad.mit.edu 36 15 38352904 38352904 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128629 exon7 c.C1556T p.A519V . . . PLCB2 5330 broad.mit.edu 36 15 38370164 38370164 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004573 exon29 c.G3115A p.D1039N . . . DISP2 85455 broad.mit.edu 36 15 38445193 38445193 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033510 exon7 c.C920A p.S307Y . . . BAHD1 22893 broad.mit.edu 36 15 38544861 38544861 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014952 exon6 c.G2088T p.Q696H . . . CASC5 57082 broad.mit.edu 36 15 38700469 38700469 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170589 exon11 c.T793G p.F265V . . . CASC5 57082 broad.mit.edu 36 15 38700998 38700998 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170589 exon11 c.C1322A p.S441Y . . . CASC5 57082 broad.mit.edu 36 15 38701789 38701789 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170589 exon11 c.C2113A p.L705I . . . CASC5 57082 broad.mit.edu 36 15 38703048 38703048 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170589 exon11 c.C3372T p.N1124N . . . INO80 54617 broad.mit.edu 36 15 39149121 39149121 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017553 exon14 c.C1721A p.S574X . . . TTBK2 146057 broad.mit.edu 36 15 40825403 40825403 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173500 exon15 c.A3617G p.Q1206R . . . UBR1 197131 broad.mit.edu 36 15 41040143 41040143 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174916 exon43 c.C4749T p.T1583T . . . EPB42 2038 broad.mit.edu 36 15 41294755 41294755 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114134 exon3 c.G260A p.R87Q . . . LCMT2 9836 broad.mit.edu 36 15 41408641 41408641 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014793 exon1 c.C1339A p.L447I . . . TP53BP1 7158 broad.mit.edu 36 15 41489180 41489180 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005657 exon25 c.G5342A p.R1781Q . . . TP53BP1 7158 broad.mit.edu 36 15 41571795 41571795 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005657 exon2 c.G156A p.T52T . . . MAP1A 4130 broad.mit.edu 36 15 41603316 41603316 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002373 exon4 c.G2353A p.E785K . . . SPG11 80208 broad.mit.edu 36 15 42674810 42674810 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025137 exon26 c.G4574T p.R1525I . . . SPG11 80208 broad.mit.edu 36 15 42680074 42680074 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025137 exon21 c.A3569C p.K1190T . . . SPG11 80208 broad.mit.edu 36 15 42713095 42713095 + Silent SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025137 exon8 c.A1635C p.V545V . . . DUOXA2 405753 broad.mit.edu 36 15 43195334 43195334 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207581 exon2 c.G193A p.A65T . . . SEMA6D 80031 broad.mit.edu 36 15 45850865 45850865 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153616 exon17 c.G2588T p.R863I . . . SLC12A1 6557 broad.mit.edu 36 15 46309892 46309892 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184832 exon7 c.C875T p.S292L . . . SLC12A1 6557 broad.mit.edu 36 15 46349227 46349227 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184832 exon19 c.G2376T p.E792D . . . CEP152 22995 broad.mit.edu 36 15 46818295 46818295 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001194998 exon27 c.G4576A p.D1526N . . . CEP152 22995 broad.mit.edu 36 15 46835777 46835777 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001194998 exon20 c.G2960A p.R987Q . . . C15orf33 196951 broad.mit.edu 36 15 47450883 47450883 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152647 exon12 c.G1018A p.D340N . . . DTWD1 56986 broad.mit.edu 36 15 47714174 47714174 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144955 exon4 c.C558A p.F186L . . . ATP8B4 79895 broad.mit.edu 36 15 48013615 48013615 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024837 exon15 c.C1344A p.F448L . . . TRPM7 54822 broad.mit.edu 36 15 48671727 48671727 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017672 exon26 c.G3997T p.D1333Y . . . GLDN 342035 broad.mit.edu 36 15 49484010 49484010 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181789 exon10 c.G1423A p.A475T . . . DMXL2 23312 broad.mit.edu 36 15 49647983 49647983 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015263 exon3 c.G278T p.R93I . . . MAPK6 5597 broad.mit.edu 36 15 50126049 50126049 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002748 exon2 c.G100T p.V34F . . . MYO5A 4644 broad.mit.edu 36 15 50475856 50475856 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000259 exon11 c.A1350G p.E450E . . . ARPP19 10776 broad.mit.edu 36 15 50636682 50636682 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006628 exon2 c.G75A p.E25E . . . KIAA1370 56204 broad.mit.edu 36 15 50688450 50688450 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019600 exon6 c.T1953G p.I651M . . . KIAA1370 56204 broad.mit.edu 36 15 50689067 50689067 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_019600 exon6 c.C1336T p.R446X . . . ONECUT1 3175 broad.mit.edu 36 15 50868429 50868429 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004498 exon1 c.C945T p.F315F . . . WDR72 256764 broad.mit.edu 36 15 51695236 51695236 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182758 exon15 c.A2459C p.N820T . . . WDR72 256764 broad.mit.edu 36 15 51785495 51785495 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182758 exon10 c.C1023A p.F341L . . . CCPG1 9236 broad.mit.edu 36 15 53439064 53439064 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004748 exon8 c.C2199A p.F733L . . . PYGO1 26108 broad.mit.edu 36 15 53626116 53626116 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015617 exon3 c.T657A p.N219K . . . PYGO1 26108 broad.mit.edu 36 15 53626272 53626272 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015617 exon3 c.G501T p.Q167H . . . NEDD4 4734 broad.mit.edu 36 15 54004147 54004147 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006154 exon5 c.G280A p.E94K . . . TEX9 374618 broad.mit.edu 36 15 54474218 54474218 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198524 exon9 c.G722A p.R241Q . . . TEX9 374618 broad.mit.edu 36 15 54491908 54491908 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198524 exon10 c.A945G p.K315K . . . MNS1 55329 broad.mit.edu 36 15 54543583 54543583 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018365 exon2 c.G158A p.R53H . . . ZNF280D 54816 broad.mit.edu 36 15 54745955 54745955 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017661 exon16 c.A1924G p.T642A . . . TCF12 6938 broad.mit.edu 36 15 55311852 55311852 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207037 exon10 c.C757A p.L253M . . . LIPC 3990 broad.mit.edu 36 15 56617928 56617928 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000236 exon2 c.C193T p.R65X . . . SLTM 79811 broad.mit.edu 36 15 56959497 56959497 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024755 exon21 c.G3098A p.R1033Q . . . ANXA2 302 broad.mit.edu 36 15 58436715 58436715 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002858 exon6 c.G424A p.D142N . . . TLN2 83660 broad.mit.edu 36 15 60827932 60827932 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015059 exon30 c.C4116T p.L1372L . . . APH1B 83464 broad.mit.edu 36 15 61385000 61385000 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031301 exon6 c.G741T p.K247N . . . HERC1 8925 broad.mit.edu 36 15 61748879 61748879 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003922 exon40 c.C8117A p.S2706X . . . HERC1 8925 broad.mit.edu 36 15 61778120 61778120 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003922 exon26 c.C4765A p.H1589N . . . HERC1 8925 broad.mit.edu 36 15 61854389 61854389 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003922 exon2 c.C487T p.R163X . . . ANKDD1A 348094 broad.mit.edu 36 15 63029209 63029209 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182703 exon14 c.C1446T p.F482F . . . DPP8 54878 broad.mit.edu 36 15 63580145 63580145 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017743 exon4 c.C398A p.S133Y . . . PTPLAD1 51495 broad.mit.edu 36 15 63655705 63655705 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016395 exon11 c.A1024C p.N342H . . . SLC24A1 9187 broad.mit.edu 36 15 63723821 63723821 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004727 exon5 c.C2057T p.S686L . . . MEGF11 84465 broad.mit.edu 36 15 64050025 64050025 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032445 exon8 c.G819T p.Q273H . . . LCTL 197021 broad.mit.edu 36 15 64632617 64632617 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207338 exon9 c.C956T p.S319L . . . MAP2K5 5607 broad.mit.edu 36 15 65622809 65622809 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145160 exon1 c.G82A p.A28T . . . PIAS1 8554 broad.mit.edu 36 15 66255976 66255976 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016166 exon11 c.G1411T p.E471X . . . ITGA11 22801 broad.mit.edu 36 15 66430750 66430750 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004439 exon8 c.T794G p.V265G . . . SPESP1 246777 broad.mit.edu 36 15 67025844 67025844 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145658 exon2 c.C917T p.S306F . . . LRRC49 54839 broad.mit.edu 36 15 68975270 68975270 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017691 exon3 c.C134T p.S45L . . . THSD4 79875 broad.mit.edu 36 15 69824611 69824611 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024817 exon11 c.C2019A p.I673I . . . MYO9A 4649 broad.mit.edu 36 15 69930693 69930693 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006901 exon37 c.G6536A p.R2179Q . . . MYO9A 4649 broad.mit.edu 36 15 69977092 69977092 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006901 exon25 c.C4806T p.T1602T . . . C15orf60 283677 broad.mit.edu 36 15 71522586 71522586 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042367 exon1 c.G7A p.E3K . . . ISLR 3671 broad.mit.edu 36 15 72254799 72254799 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201526 exon2 c.G547A p.D183N ISLR,large_intestine,colon,Substitution - Missense,0 . . STRA6 64220 broad.mit.edu 36 15 72281657 72281657 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199041 exon2 c.C50T p.S17L . . . CYP11A1 1583 broad.mit.edu 36 15 72422515 72422515 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000781 exon5 c.G846T p.Q282H . . . CYP1A1 1543 broad.mit.edu 36 15 72802378 72802378 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000499 exon2 c.G114T p.K38N . . . UBE2Q2 92912 broad.mit.edu 36 15 73939278 73939278 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145335 exon3 c.G239A p.R80H . . . MORF4L1 10933 broad.mit.edu 36 15 76970398 76970398 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006791 exon6 c.G336T p.K112N . . . RASGRF1 5923 broad.mit.edu 36 15 77081100 77081100 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002891 exon17 c.C2582A p.S861Y . . . KIAA1199 57214 broad.mit.edu 36 15 78963635 78963635 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018689 exon6 c.G682A p.D228N . . . CPEB1 64506 broad.mit.edu 36 15 81019701 81019701 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079535 exon4 c.C730T p.P244S . . . AP3B2 8120 broad.mit.edu 36 15 81127983 81127983 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004644 exon23 c.C2852T p.S951F . . . TM6SF1 53346 broad.mit.edu 36 15 81582528 81582528 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023003 exon6 c.G497A p.R166Q . . . BNC1 646 broad.mit.edu 36 15 81717844 81717844 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001717 exon5 c.G2339A p.S780N . . . BNC1 646 broad.mit.edu 36 15 81724078 81724078 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001717 exon4 c.C929G p.A310G . . . SH3GL3 6457 broad.mit.edu 36 15 82019063 82019063 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003027 exon2 c.C100A p.L34I . . . ADAMTSL3 57188 broad.mit.edu 36 15 82344898 82344898 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207517 exon10 c.C1002A p.F334L . . . ADAMTSL3 57188 broad.mit.edu 36 15 82450921 82450921 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207517 exon23 c.C3924T p.I1308I . . . AGBL1 123624 broad.mit.edu 36 15 84608506 84608506 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152336 exon10 c.A962C p.K321T . . . AGBL1 123624 broad.mit.edu 36 15 84608813 84608813 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152336 exon10 c.C1269T p.D423D . . . NTRK3 4916 broad.mit.edu 36 15 86273465 86273465 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002530 exon16 c.C2094T p.F698F . . . RLBP1 6017 broad.mit.edu 36 15 87554633 87554633 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000326 exon9 c.G841A p.D281N . . . POLG 5428 broad.mit.edu 36 15 87663491 87663491 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126131 exon19 c.C3076T p.R1026C . . . C15orf42 90381 broad.mit.edu 36 15 87953052 87953052 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152259 exon15 c.C2737T p.R913X . . . ANPEP 290 broad.mit.edu 36 15 88141835 88141835 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001150 exon15 c.G2132A p.R711H . . . IQGAP1 8826 broad.mit.edu 36 15 88798716 88798716 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003870 exon14 c.G1540T p.E514X . . . BLM 641 broad.mit.edu 36 15 89153374 89153374 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000057 exon20 c.C3755T p.S1252F . . . MAN2A2 4122 broad.mit.edu 36 15 89263973 89263973 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006122 exon22 c.C3405A p.V1135V . . . MCTP2 55784 broad.mit.edu 36 15 92744155 92744155 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159643 exon15 c.T1892C p.V631A . . . MCTP2 55784 broad.mit.edu 36 15 92820956 92820956 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159643 exon19 c.G2333A p.R778Q . . . MCTP2 55784 broad.mit.edu 36 15 92823244 92823244 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159643 exon20 c.C2449T p.R817W . . . FAM169B 283777 broad.mit.edu 36 15 96800467 96800467 + Missense_Mutation SNP C A A rs34036460 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182562 exon7 c.G495T p.K165N . . . SYNM 23336 broad.mit.edu 36 15 97484466 97484466 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015286 exon3 c.G951T p.E317D . . . LASS3 204219 broad.mit.edu 36 15 98830704 98830704 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178842 exon10 c.G686A p.R229H . . . ALDH1A3 220 broad.mit.edu 36 15 99250268 99250268 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000693 exon4 c.T376A p.F126I . . . PCSK6 5046 broad.mit.edu 36 15 99756259 99756259 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138322 exon7 c.A867C p.K289N . . . TEKT5 146279 broad.mit.edu 36 16 10696178 10696178 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_144674 exon1 c.C54T p.C18C . . . ERCC4 2072 broad.mit.edu 36 16 13936573 13936573 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005236 exon8 c.C1283T p.A428V . . . PARN 5073 broad.mit.edu 36 16 14438120 14438120 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002582 exon24 c.G1875A p.S625S . . . PARN 5073 broad.mit.edu 36 16 14484109 14484109 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002582 exon22 c.G1557T p.E519D . . . C16orf45 89927 broad.mit.edu 36 16 15569371 15569371 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142469 exon3 c.C210A p.I70I . . . MYH11 4629 broad.mit.edu 36 16 15741469 15741469 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040114 exon24 c.G2958T p.K986N . . . MYH11 4629 broad.mit.edu 36 16 15788065 15788065 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040114 exon5 c.G556A p.E186K . . . XYLT1 64131 broad.mit.edu 36 16 17260689 17260689 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022166 exon3 c.G570T p.K190N . . . C16orf73 254528 broad.mit.edu 36 16 1834876 1834876 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152764 exon10 c.G868T p.E290X . . . SMG1 23049 broad.mit.edu 36 16 18815662 18815662 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015092 exon2 c.G210A p.R70R . . . GP2 2813 broad.mit.edu 36 16 20243052 20243052 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001502 exon3 c.C122T p.S41L . . . PDILT 204474 broad.mit.edu 36 16 20288399 20288399 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174924 exon8 c.C1032T p.D344D . . . LOC81691 81691 broad.mit.edu 36 16 20725844 20725844 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199053 exon2 c.A68C p.N23T . . . DNAH3 55567 broad.mit.edu 36 16 20882360 20882360 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017539 exon53 c.C10347A p.I3449I . . . DNAH3 55567 broad.mit.edu 36 16 20894220 20894220 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017539 exon51 c.G8095T p.E2699X . . . DNAH3 55567 broad.mit.edu 36 16 21059387 21059387 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017539 exon5 c.G667T p.E223X . . . ZP2 7783 broad.mit.edu 36 16 21124374 21124374 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003460 exon7 c.G561T p.E187D . . . POLR3E 55718 broad.mit.edu 36 16 22243415 22243415 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018119 exon16 c.G1219A p.E407K . . . ABCA3 21 broad.mit.edu 36 16 2298524 2298524 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001089 exon11 c.C1213A p.L405I . . . USP31 57478 broad.mit.edu 36 16 22988150 22988150 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020718 exon16 c.G2777T p.S926I . . . ERN2 10595 broad.mit.edu 36 16 23625193 23625193 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033266 exon7 c.G692A p.R231H . . . ITFG3 83986 broad.mit.edu 36 16 244475 244475 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032039 exon3 c.C62T p.S21L . . . RBBP6 5930 broad.mit.edu 36 16 24490885 24490885 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018703 exon17 c.A4895C p.K1632T . . . ZKSCAN2 342357 broad.mit.edu 36 16 25165805 25165805 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012981 exon5 c.C1213T p.R405X . . . KIAA0556 23247 broad.mit.edu 36 16 27673056 27673056 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015202 exon18 c.G3614A p.G1205D . . . DOC2A 8448 broad.mit.edu 36 16 29926117 29926117 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003586 exon6 c.G532A p.A178T . . . SEPHS2 22928 broad.mit.edu 36 16 30363288 30363288 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012248 exon1 c.G1262A p.R421Q . . . ITGAL 3683 broad.mit.edu 36 16 30408172 30408172 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114380 exon9 c.G928T p.E310X . . . ITGAM 3684 broad.mit.edu 36 16 31248092 31248092 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000632 exon24 c.G2835T p.E945D . . . ITGAD 3681 broad.mit.edu 36 16 31330298 31330298 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005353 exon14 c.C1666A p.H556N . . . ARMC5 79798 broad.mit.edu 36 16 31380813 31380813 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105247 exon2 c.C545T p.A182V . . . ZNF267 10308 broad.mit.edu 36 16 31833691 31833691 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003414 exon4 c.G620A p.R207Q . . . OR1F1 4992 broad.mit.edu 36 16 3194833 3194833 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012360 exon1 c.G586T p.E196X . . . MEFV 4210 broad.mit.edu 36 16 3244657 3244657 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000243 exon2 c.G412A p.G138R . . . ZNF434 54925 broad.mit.edu 36 16 3372864 3372864 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017810 exon6 c.G1447T p.D483Y . . . ZNF597 146434 broad.mit.edu 36 16 3426863 3426863 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152457 exon4 c.G837A p.E279E . . . CLUAP1 23059 broad.mit.edu 36 16 3509988 3509988 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024793 exon3 c.T166G p.L56V . . . ADCY9 115 broad.mit.edu 36 16 4103815 4103815 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001116 exon2 c.G1630A p.E544K . . . HMOX2 3163 broad.mit.edu 36 16 4495577 4495577 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002134 exon2 c.G51T p.K17N . . . ABCC11 85320 broad.mit.edu 36 16 46791831 46791831 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145186 exon15 c.G1939A p.A647T . . . N4BP1 9683 broad.mit.edu 36 16 47152265 47152265 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153029 exon2 c.G1790A p.R597Q . . . C16orf71 146562 broad.mit.edu 36 16 4733055 4733055 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139170 exon5 c.C794T p.A265V . . . SNX20 124460 broad.mit.edu 36 16 49265408 49265408 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182854 exon4 c.G361A p.A121T . . . NOD2 64127 broad.mit.edu 36 16 49302444 49302444 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022162 exon4 c.T1121C p.V374A . . . NOD2 64127 broad.mit.edu 36 16 49303519 49303519 + Silent SNP C T T rs6413461 byFrequency TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022162 exon4 c.C2196T p.S732S . . . SALL1 6299 broad.mit.edu 36 16 49730680 49730680 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002968 exon2 c.C2954A p.S985Y . . . SALL1 6299 broad.mit.edu 36 16 49731306 49731306 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002968 exon2 c.G2328A p.T776T . . . SALL1 6299 broad.mit.edu 36 16 49731420 49731420 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002968 exon2 c.C2214A p.I738I . . . SALL1 6299 broad.mit.edu 36 16 49733415 49733415 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002968 exon2 c.C219T p.I73I . . . CHD9 80205 broad.mit.edu 36 16 51818811 51818811 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025134 exon6 c.G2046A p.E682E . . . CHD9 80205 broad.mit.edu 36 16 51888528 51888528 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025134 exon30 c.C5670A p.F1890L . . . CHD9 80205 broad.mit.edu 36 16 51906240 51906240 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025134 exon36 c.C7319A p.S2440Y . . . CHD9 80205 broad.mit.edu 36 16 51915784 51915784 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025134 exon39 c.C8122A p.L2708M . . . RBL2 5934 broad.mit.edu 36 16 52053200 52053200 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005611 exon10 c.G1393T p.E465X . . . LPCAT2 54947 broad.mit.edu 36 16 54123347 54123347 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017839 exon5 c.T663C p.G221G . . . CES5A 221223 broad.mit.edu 36 16 54438072 54438072 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143685 exon13 c.C1520A p.S507Y . . . CES5A 221223 broad.mit.edu 36 16 54454848 54454848 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143685 exon6 c.C723A p.A241A . . . MT3 4504 broad.mit.edu 36 16 55182274 55182274 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005954 exon3 c.C119T p.A40V . . . CNGB1 1258 broad.mit.edu 36 16 56552287 56552287 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135639 exon8 c.G492T p.Q164H . . . CNOT1 23019 broad.mit.edu 36 16 57123661 57123661 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016284 exon41 c.A6035C p.N2012T . . . CNOT1 23019 broad.mit.edu 36 16 57172130 57172130 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206999 exon12 c.G1251T p.E417D . . . CNOT1 23019 broad.mit.edu 36 16 57179224 57179224 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206999 exon4 c.G270A p.T90T . . . CDH8 1006 broad.mit.edu 36 16 60318547 60318547 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001796 exon9 c.C1488T p.F496F . . . CDH8 1006 broad.mit.edu 36 16 60380796 60380796 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001796 exon8 c.G1369T p.E457X . . . CDH11 1009 broad.mit.edu 36 16 63564334 63564334 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001797 exon9 c.A1364G p.N455S . . . TRADD 8717 broad.mit.edu 36 16 65747996 65747996 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003789 exon2 c.G69T p.L23L . . . ZDHHC1 29800 broad.mit.edu 36 16 65990251 65990251 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013304 exon6 c.C628T p.R210C . . . FAM65A 79567 broad.mit.edu 36 16 66137203 66137203 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193522 exon19 c.T3338C p.V1113A . . . RANBP10 57610 broad.mit.edu 36 16 66397747 66397747 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020850 exon1 c.A194G p.Y65C . . . CIRH1A 84916 broad.mit.edu 36 16 67745855 67745855 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032830 exon10 c.G1158T p.K386N . . . AARS 16 broad.mit.edu 36 16 68844250 68844250 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001605 exon21 c.G2782A p.D928N . . . HYDIN 54768 broad.mit.edu 36 16 69409861 69409861 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon84 c.C14540T p.A4847V . . . HYDIN 54768 broad.mit.edu 36 16 69475400 69475400 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon59 c.C9900T p.I3300I . . . HYDIN 54768 broad.mit.edu 36 16 69500144 69500144 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon48 c.C8123A p.S2708Y . . . HYDIN 54768 broad.mit.edu 36 16 69527375 69527375 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon45 c.C7136A p.S2379Y . . . HYDIN 54768 broad.mit.edu 36 16 69543941 69543941 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon41 c.G6412T p.E2138X . . . HYDIN 54768 broad.mit.edu 36 16 69583480 69583480 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon24 c.T3779G p.F1260C . . . ZNF19 7567 broad.mit.edu 36 16 70067409 70067409 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006961 exon6 c.G542A p.R181K . . . TAT 6898 broad.mit.edu 36 16 70167358 70167358 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000353 exon3 c.C308T p.S103L . . . PHLPP2 23035 broad.mit.edu 36 16 70244260 70244260 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015020 exon17 c.C2751A p.V917V . . . PHLPP2 23035 broad.mit.edu 36 16 70270870 70270870 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015020 exon6 c.G960T p.E320D . . . TXNL4B 54957 broad.mit.edu 36 16 70678126 70678126 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142317 exon4 c.C361T p.R121X . . . ZFHX3 463 broad.mit.edu 36 16 71385031 71385031 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006885 exon9 c.G9051A p.T3017T . . . PSMD7 5713 broad.mit.edu 36 16 72896892 72896892 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002811 exon7 c.C735T p.F245F . . . GLG1 2734 broad.mit.edu 36 16 73049301 73049301 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145666 exon23 c.C3204T p.C1068C . . . ZFP1 162239 broad.mit.edu 36 16 73761204 73761204 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153688 exon4 c.G695T p.R232I . . . KARS 3735 broad.mit.edu 36 16 74227448 74227448 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130089 exon6 c.C616T p.R206W . . . CNTNAP4 85445 broad.mit.edu 36 16 75113551 75113551 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033401 exon17 c.A2650G p.T884A . . . ADAMTS18 170692 broad.mit.edu 36 16 75953613 75953613 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199355 exon7 c.G1106A p.C369Y . . . VAT1L 57687 broad.mit.edu 36 16 76467771 76467771 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020927 exon5 c.C726A p.I242I . . . MPHOSPH6 10200 broad.mit.edu 36 16 80742548 80742548 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005792 exon3 c.A237G p.G79G . . . SLC38A8 146167 broad.mit.edu 36 16 82608344 82608344 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080442 exon7 c.G855T p.L285F . . . LRRC50 123872 broad.mit.edu 36 16 82745730 82745730 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178452 exon4 c.C400A p.L134I . . . FBXO31 79791 broad.mit.edu 36 16 85925339 85925339 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024735 exon8 c.C1051T p.R351W . . . ZC3H18 124245 broad.mit.edu 36 16 87193814 87193814 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144604 exon6 c.C1045T p.R349X . . . GALNS 2588 broad.mit.edu 36 16 87412032 87412032 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000512 exon13 c.T1366G p.F456V . . . ANKRD11 29123 broad.mit.edu 36 16 87879952 87879952 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013275 exon8 c.G888A p.S296S . . . C16orf3 750 broad.mit.edu 36 16 88622986 88622986 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001214 exon1 c.C266T p.T89M . . . GAS8 2622 broad.mit.edu 36 16 88631164 88631164 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001481 exon7 c.G780T p.K260N . . . GRIN2A 2903 broad.mit.edu 36 16 9892444 9892444 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134408 exon4 c.T1022C p.V341A . . . MYH8 4626 broad.mit.edu 36 17 10245216 10245216 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002472 exon25 c.A3126C p.E1042D . . . MYH8 4626 broad.mit.edu 36 17 10250373 10250373 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002472 exon20 c.G2238T p.E746D . . . MYH1 4619 broad.mit.edu 36 17 10356797 10356797 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005963 exon11 c.G934A p.D312N . . . DNAH9 1770 broad.mit.edu 36 17 11480769 11480769 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001372 exon9 c.G1729T p.D577Y . . . DNAH9 1770 broad.mit.edu 36 17 11496810 11496810 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001372 exon14 c.C2361T p.C787C . . . DNAH9 1770 broad.mit.edu 36 17 11524767 11524767 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001372 exon19 c.G3579A p.E1193E . . . DNAH9 1770 broad.mit.edu 36 17 11537934 11537934 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001372 exon21 c.G4639A p.D1547N . . . DNAH9 1770 broad.mit.edu 36 17 11628431 11628431 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001372 exon41 c.C7911T p.L2637L . . . DNAH9 1770 broad.mit.edu 36 17 11727674 11727674 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001372 exon56 c.C10853T p.T3618M . . . DNAH9 1770 broad.mit.edu 36 17 11806037 11806037 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004662 exon14 c.C1908A p.L636L . . . ZNF18 7566 broad.mit.edu 36 17 11822761 11822761 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144680 exon9 c.G888T p.E296D . . . TEKT3 64518 broad.mit.edu 36 17 15172092 15172092 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031898 exon4 c.G605A p.R202Q . . . CDRT1 374286 broad.mit.edu 36 17 15433205 15433205 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006382 exon12 c.G2068A p.E690K . . . TRIM16 10626 broad.mit.edu 36 17 15451714 15451714 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006382 exon6 c.C1131T p.Y377Y . . . NCOR1 9611 broad.mit.edu 36 17 15914220 15914220 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190440 exon30 c.G4545T p.M1515I . . . ZNF287 57336 broad.mit.edu 36 17 16396509 16396509 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020653 exon6 c.C1672A p.H558N . . . CCDC144A 9720 broad.mit.edu 36 17 16553490 16553490 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014695 exon5 c.A1394G p.N465S . . . CCDC144A 9720 broad.mit.edu 36 17 16579468 16579468 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014695 exon12 c.G3158A p.R1053Q . . . TNFRSF13B 23495 broad.mit.edu 36 17 16784476 16784476 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012452 exon4 c.G520A p.V174I . . . MED9 55090 broad.mit.edu 36 17 17335517 17335517 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018019 exon2 c.G424A p.E142K . . . MYO15A 51168 broad.mit.edu 36 17 18001263 18001263 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016239 exon49 c.G8782A p.D2928N . . . FBXW10 10517 broad.mit.edu 36 17 18588468 18588468 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031456 exon1 c.G186T p.K62N . . . PRPSAP2 5636 broad.mit.edu 36 17 18768019 18768019 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002767 exon10 c.C801T p.I267I . . . SLC5A10 125206 broad.mit.edu 36 17 18804588 18804588 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152351 exon5 c.C351T p.I117I . . . RNF112 7732 broad.mit.edu 36 17 19258721 19258721 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007148 exon10 c.A1054C p.S352R . . . SLC47A1 55244 broad.mit.edu 36 17 19377926 19377926 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018242 exon1 c.C82A p.L28M . . . SLC47A1 55244 broad.mit.edu 36 17 19411034 19411034 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018242 exon14 c.A1210C p.N404H . . . MAP2K3 5606 broad.mit.edu 36 17 21157413 21157413 + Missense_Mutation SNP G T T rs55740804 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002756 exon11 c.G844T p.A282S . . . SMG6 23293 broad.mit.edu 36 17 2150396 2150396 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170957 exon2 c.T308A p.I103N . . . SGSM2 9905 broad.mit.edu 36 17 2214640 2214640 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098509 exon9 c.C933T p.S311S . . . METT10D 79066 broad.mit.edu 36 17 2314381 2314381 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024086 exon6 c.G599A p.R200Q . . . SARM1 23098 broad.mit.edu 36 17 23747107 23747107 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015077 exon8 c.C1978T p.R660X . . . PIPOX 51268 broad.mit.edu 36 17 24404703 24404703 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016518 exon4 c.G624T p.Q208H . . . GIT1 28964 broad.mit.edu 36 17 24929910 24929910 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014030 exon8 c.G775A p.E259K . . . CORO6 84940 broad.mit.edu 36 17 24969964 24969964 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032854 exon4 c.C603A p.I201I . . . PAFAH1B1 5048 broad.mit.edu 36 17 2520238 2520238 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000430 exon6 c.G431A p.R144Q . . . OMG 4974 broad.mit.edu 36 17 26646871 26646871 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002544 exon2 c.A605C p.K202T . . . C17orf79 55352 broad.mit.edu 36 17 27203994 27203994 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018405 exon3 c.T335A p.F112Y . . . OR1G1 8390 broad.mit.edu 36 17 2977394 2977394 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003555 exon1 c.C202A p.L68I . . . NLE1 54475 broad.mit.edu 36 17 30491005 30491005 + De_novo_Start_OutOfFrame SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018096 exon3 c.C356A p.S119Y . . . OR1A1 8383 broad.mit.edu 36 17 3065999 3065999 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014565 exon1 c.G335A p.S112N . . . SLFN11 91607 broad.mit.edu 36 17 30703861 30703861 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001104589 exon6 c.G2333A p.R778Q . . . SLFN11 91607 broad.mit.edu 36 17 30714465 30714465 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001104589 exon3 c.A475C p.K159Q . . . SLFN13 146857 broad.mit.edu 36 17 30792173 30792173 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144682 exon6 c.G2248T p.E750X . . . SLFN13 146857 broad.mit.edu 36 17 30796348 30796348 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144682 exon3 c.G465T p.K155N . . . PEX12 5193 broad.mit.edu 36 17 30927181 30927181 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000286 exon3 c.A813C p.E271D . . . CCL4 6351 broad.mit.edu 36 17 31455474 31455474 + Silent SNP G A A rs1130755 byCluster TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002984 exon1 c.G63A p.A21A . . . PIGW 284098 broad.mit.edu 36 17 31968301 31968301 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178517 exon2 c.T1238G p.L413R . . . ACACA 31 broad.mit.edu 36 17 32705235 32705235 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198834 exon9 c.G970T p.E324X . . . OR3A3 8392 broad.mit.edu 36 17 3271477 3271477 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012373 exon1 c.T866C p.V289A . . . ACACA 31 broad.mit.edu 36 17 32715904 32715904 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198834 exon4 c.C419T p.A140V . . . DDX52 11056 broad.mit.edu 36 17 33055559 33055559 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007010 exon10 c.A1347G p.Q449Q . . . ASPA 443 broad.mit.edu 36 17 3339348 3339348 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000049 exon4 c.T596G p.I199S . . . GPR179 440435 broad.mit.edu 36 17 33737052 33737052 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004334 exon11 c.C5926T p.R1976C . . . GPR179 440435 broad.mit.edu 36 17 33739682 33739682 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004334 exon11 c.G3296A p.S1099N . . . SRCIN1 80725 broad.mit.edu 36 17 33961829 33961829 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025248 exon14 c.C2546T p.T849M . . . CWC25 54883 broad.mit.edu 36 17 34212511 34212511 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017748 exon9 c.G1131A p.E377E . . . ERBB2 2064 broad.mit.edu 36 17 35125601 35125601 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005862 exon15 c.G1306A p.A436T . . . ITGAE 3682 broad.mit.edu 36 17 3570436 3570436 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002208 exon29 c.G3247T p.D1083Y . . . CCR7 1236 broad.mit.edu 36 17 35965447 35965447 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001838 exon3 c.C210T p.F70F . . . ITGAE 3682 broad.mit.edu 36 17 3611182 3611182 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002208 exon6 c.G472T p.D158Y . . . KRT26 353288 broad.mit.edu 36 17 36178766 36178766 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181539 exon6 c.C1078T p.R360X . . . KRT23 25984 broad.mit.edu 36 17 36335200 36335200 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015515 exon7 c.G1074T p.L358L . . . KRT32 3882 broad.mit.edu 36 17 36875934 36875934 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002278 exon2 c.G489T p.E163D . . . KRT35 3886 broad.mit.edu 36 17 36889504 36889504 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002280 exon2 c.A527C p.K176T . . . KRT9 3857 broad.mit.edu 36 17 36977061 36977061 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000226 exon7 c.C1862A p.S621Y . . . KRT16 3868 broad.mit.edu 36 17 37019783 37019783 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005557 exon8 c.C1352T p.S451L . . . NT5C3L 115024 broad.mit.edu 36 17 37238642 37238642 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052935 exon7 c.G493T p.E165X . . . KLHL10 317719 broad.mit.edu 36 17 37247731 37247731 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152467 exon1 c.G21T p.A7A . . . AOC3 8639 broad.mit.edu 36 17 38258222 38258222 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003734 exon1 c.G1336T p.D446Y . . . G6PC 2538 broad.mit.edu 36 17 38306552 38306552 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000151 exon1 c.G133A p.V45I . . . BRCA1 672 broad.mit.edu 36 17 38469451 38469451 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007294 exon17 c.A5118G p.G1706G . . . BRCA1 672 broad.mit.edu 36 17 38498355 38498355 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007294 exon10 c.G2719A p.E907K . . . GPATCH8 23131 broad.mit.edu 36 17 39867963 39867963 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002909 exon5 c.A344G p.Y115C . . . C17orf104 284071 broad.mit.edu 36 17 40100279 40100279 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145080 exon5 c.C1474T p.R492X . . . GJC1 10052 broad.mit.edu 36 17 40238576 40238576 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005497 exon3 c.G136A p.D46N . . . GOSR2 9570 broad.mit.edu 36 17 42364476 42364476 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012511 exon4 c.C248T p.A83V . . . C17orf57 124989 broad.mit.edu 36 17 42826418 42826418 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152347 exon16 c.C1755A p.F585L . . . MYBBP1A 10514 broad.mit.edu 36 17 4389924 4389924 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014520 exon26 c.C3522A p.F1174L . . . MYBBP1A 10514 broad.mit.edu 36 17 4404242 4404242 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014520 exon3 c.G375T p.K125N . . . IGF2BP1 10642 broad.mit.edu 36 17 44470722 44470722 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006546 exon6 c.C595T p.R199W . . . IGF2BP1 10642 broad.mit.edu 36 17 44474703 44474703 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160423 exon7 c.C625T p.R209W . . . MYST2 11143 broad.mit.edu 36 17 45241496 45241496 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199156 exon4 c.G263A p.R88Q . . . TAC4 255061 broad.mit.edu 36 17 45272228 45272228 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077503 exon3 c.G242T p.R81I . . . ITGA3 3675 broad.mit.edu 36 17 45520109 45520109 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002204 exon24 c.C2922A p.F974L . . . EME1 146956 broad.mit.edu 36 17 45807858 45807858 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166131 exon2 c.C290T p.A97V . . . CACNA1G 8913 broad.mit.edu 36 17 46038262 46038262 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198382 exon22 c.T4232C p.F1411S . . . CACNA1G 8913 broad.mit.edu 36 17 46038534 46038534 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198397 exon23 c.G4573A p.A1525T . . . CACNA1G 8913 broad.mit.edu 36 17 46048638 46048638 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198382 exon27 c.C4846A p.L1616M . . . CHRNE 1145 broad.mit.edu 36 17 4746018 4746018 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000080 exon5 c.C488T p.S163L . . . ZFP3 124961 broad.mit.edu 36 17 4936341 4936341 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153018 exon2 c.G818T p.R273I . . . ZNF594 84622 broad.mit.edu 36 17 5027500 5027500 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032530 exon2 c.G776T p.R259I . . . RABEP1 9135 broad.mit.edu 36 17 5209189 5209189 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083585 exon11 c.A1717G p.K573E . . . DGKE 8526 broad.mit.edu 36 17 52267487 52267487 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003647 exon2 c.T332G p.I111S . . . EPX 8288 broad.mit.edu 36 17 53626380 53626380 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000502 exon5 c.G522T p.E174D . . . MPO 4353 broad.mit.edu 36 17 53705146 53705146 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000250 exon10 c.C1754A p.A585D . . . BZRAP1 9256 broad.mit.edu 36 17 53741062 53741062 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004758 exon22 c.G4570T p.D1524Y . . . HSF5 124535 broad.mit.edu 36 17 53912354 53912354 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080439 exon2 c.C824A p.S275Y . . . TEX14 56155 broad.mit.edu 36 17 54004327 54004327 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198393 exon25 c.C3791A p.S1264Y . . . NLRP1 22861 broad.mit.edu 36 17 5402554 5402554 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033007 exon4 c.C2186T p.T729M . . . NLRP1 22861 broad.mit.edu 36 17 5426045 5426045 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033007 exon3 c.C510T p.S170S . . . PPM1E 22843 broad.mit.edu 36 17 54412421 54412421 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014906 exon7 c.G1515T p.E505D . . . PPM1E 22843 broad.mit.edu 36 17 54412521 54412521 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014906 exon7 c.G1615A p.D539N . . . DHX40 79665 broad.mit.edu 36 17 55031535 55031535 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024612 exon14 c.G1715T p.W572L . . . DHX40 79665 broad.mit.edu 36 17 55034717 55034717 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024612 exon15 c.G1859A p.R620Q . . . RPS6KB1 6198 broad.mit.edu 36 17 55378755 55378755 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003161 exon15 c.C1402A p.P468T . . . USP32 84669 broad.mit.edu 36 17 55643158 55643158 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032582 exon21 c.C2422T p.R808W . . . BCAS3 54828 broad.mit.edu 36 17 56300807 56300807 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099432 exon8 c.G565T p.D189Y . . . BRIP1 83990 broad.mit.edu 36 17 57115803 57115803 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032043 exon20 c.C3386A p.S1129Y . . . BRIP1 83990 broad.mit.edu 36 17 57148193 57148193 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032043 exon17 c.G2393A p.R798Q . . . TLK2 11011 broad.mit.edu 36 17 58011222 58011222 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006852 exon15 c.G1305A p.T435T . . . MRC2 9902 broad.mit.edu 36 17 58095767 58095767 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006039 exon2 c.G245A p.R82Q . . . MARCH10 162333 broad.mit.edu 36 17 58167604 58167604 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100875 exon6 c.T1357A p.Y453N . . . DDX42 11325 broad.mit.edu 36 17 59248801 59248801 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203499 exon18 c.C2128A p.H710N . . . WSCD1 23302 broad.mit.edu 36 17 5932065 5932065 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015253 exon3 c.C459T p.G153G . . . SCN4A 6329 broad.mit.edu 36 17 59395740 59395740 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000334 exon9 c.G1272T p.M424I . . . SCN4A 6329 broad.mit.edu 36 17 59403882 59403882 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000334 exon1 c.C52T p.R18C . . . C17orf60 284021 broad.mit.edu 36 17 59892042 59892042 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085423 exon6 c.G776T p.R259I . . . CCDC45 90799 broad.mit.edu 36 17 59961235 59961235 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138363 exon17 c.T1988A p.I663N . . . HELZ 9931 broad.mit.edu 36 17 62549561 62549561 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014877 exon26 c.C3617T p.S1206L . . . PITPNM3 83394 broad.mit.edu 36 17 6305483 6305483 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031220 exon18 c.C2424A p.F808L . . . RNMTL1 55178 broad.mit.edu 36 17 632515 632515 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018146 exon1 c.A147G p.E49E . . . BPTF 2186 broad.mit.edu 36 17 63374741 63374741 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182641 exon23 c.C7783T p.R2595C . . . AMZ2 51321 broad.mit.edu 36 17 63762237 63762237 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033570 exon6 c.C684A p.D228E . . . ABCA8 10351 broad.mit.edu 36 17 64393009 64393009 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007168 exon25 c.G3352A p.E1118K . . . ABCA9 10350 broad.mit.edu 36 17 64483912 64483912 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080283 exon38 c.G4735A p.D1579N . . . ABCA9 10350 broad.mit.edu 36 17 64491809 64491809 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080283 exon35 c.G4482T p.M1494I . . . ABCA9 10350 broad.mit.edu 36 17 64499940 64499940 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080283 exon28 c.G3687T p.K1229N . . . ABCA9 10350 broad.mit.edu 36 17 64515859 64515859 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080283 exon24 c.T3260A p.I1087K . . . ABCA9 10350 broad.mit.edu 36 17 64535518 64535518 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080283 exon13 c.G1649T p.R550I . . . ABCA6 23460 broad.mit.edu 36 17 64631104 64631104 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080284 exon10 c.A1307C p.N436T . . . KIAA0753 9851 broad.mit.edu 36 17 6467039 6467039 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014804 exon6 c.G991C p.A331P . . . KIAA0753 9851 broad.mit.edu 36 17 6472310 6472310 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014804 exon3 c.C569T p.S190L . . . ABCA5 23461 broad.mit.edu 36 17 64793963 64793963 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172232 exon16 c.G2126A p.R709H . . . ABCA5 23461 broad.mit.edu 36 17 64797657 64797657 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172232 exon13 c.G1723T p.E575X . . . ABCA5 23461 broad.mit.edu 36 17 64799051 64799051 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172232 exon12 c.G1507T p.D503Y . . . FBXO39 162517 broad.mit.edu 36 17 6624832 6624832 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153230 exon2 c.G921A p.P307P . . . SDK2 54549 broad.mit.edu 36 17 68858106 68858106 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144952 exon43 c.A5903G p.N1968S . . . CLEC10A 10462 broad.mit.edu 36 17 6920992 6920992 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182906 exon4 c.G223T p.D75Y . . . DNAI2 64446 broad.mit.edu 36 17 69789593 69789593 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023036 exon2 c.C42T p.F14F . . . DNAI2 64446 broad.mit.edu 36 17 69792786 69792786 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023036 exon3 c.C196T p.R66W . . . CD300A 11314 broad.mit.edu 36 17 69981391 69981391 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007261 exon2 c.G162T p.Q54H . . . CD300E 342510 broad.mit.edu 36 17 70124890 70124890 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181449 exon2 c.G350A p.R117H . . . TMEM104 54868 broad.mit.edu 36 17 70343770 70343770 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017728 exon10 c.C840T p.C280C . . . GRIN2C 2905 broad.mit.edu 36 17 70353871 70353871 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000835 exon11 c.G2279A p.G760D . . . OTOP2 92736 broad.mit.edu 36 17 70438145 70438145 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178160 exon6 c.G820T p.G274C . . . SLC16A5 9121 broad.mit.edu 36 17 70607957 70607957 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004695 exon5 c.G604T p.E202X . . . MIF4GD 57409 broad.mit.edu 36 17 70775829 70775829 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020679 exon4 c.T224G p.I75S . . . PHF23 79142 broad.mit.edu 36 17 7080213 7080213 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024297 exon4 c.G757T p.E253X . . . PHF23 79142 broad.mit.edu 36 17 7080418 7080418 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024297 exon4 c.G552T p.K184N . . . CLDN7 1366 broad.mit.edu 36 17 7104719 7104719 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185022 exon4 c.G439T p.D147Y . . . ZACN 353174 broad.mit.edu 36 17 71589020 71589020 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_180990 exon6 c.T611C p.V204A . . . PLSCR3 57048 broad.mit.edu 36 17 7237658 7237658 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020360 exon3 c.G229A p.E77K . . . MGAT5B 146664 broad.mit.edu 36 17 72448435 72448435 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199172 exon14 c.G1758T p.E586D . . . CHRNB1 1140 broad.mit.edu 36 17 7289374 7289374 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000747 exon2 c.C120T p.S40S . . . CHRNB1 1140 broad.mit.edu 36 17 7290927 7290927 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000747 exon4 c.G295A p.D99N . . . TP53 7157 broad.mit.edu 36 17 7518937 7518937 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126114 exon6 c.C637T p.R213X TP53,central_nervous_system,brain,Substitution - Missense,+1 . . TP53 7157 broad.mit.edu 36 17 7519260 7519260 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126114 exon5 c.A395C p.K132T TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1 . . RNF213 57674 broad.mit.edu 36 17 75934962 75934962 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020914 exon30 c.G8379T p.K2793N . . . DNAH2 146754 broad.mit.edu 36 17 7609560 7609560 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020877 exon20 c.G3463T p.D1155Y . . . DNAH2 146754 broad.mit.edu 36 17 7618898 7618898 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020877 exon28 c.G4598A p.R1533H . . . DNAH2 146754 broad.mit.edu 36 17 7630194 7630194 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020877 exon39 c.C6157T p.R2053X . . . CCDC137 339230 broad.mit.edu 36 17 77249193 77249193 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199287 exon4 c.G512A p.R171Q . . . TBCD 6904 broad.mit.edu 36 17 78444783 78444783 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005993 exon17 c.T1635C p.C545C . . . TBCD 6904 broad.mit.edu 36 17 78472729 78472729 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005993 exon25 c.G2165A p.R722H . . . GUCY2D 3000 broad.mit.edu 36 17 7850526 7850526 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000180 exon4 c.C1147A p.R383R . . . ALOX15B 247 broad.mit.edu 36 17 7888906 7888906 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039130 exon6 c.C711A p.F237L . . . C17orf68 80169 broad.mit.edu 36 17 8082450 8082450 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025099 exon3 c.C420T p.G140G . . . WDR16 146845 broad.mit.edu 36 17 9456507 9456507 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145054 exon8 c.T1011C p.D337D . . . CCDC144B 284047 broad.mit.edu 36 17 18454246 18454246 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . KRT40 125115 broad.mit.edu 36 17 36393897 36393897 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . APCDD1 147495 broad.mit.edu 36 18 10458527 10458527 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153000 exon2 c.G120T p.E40D . . . CEP192 55125 broad.mit.edu 36 18 13104135 13104135 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032142 exon42 c.G7174A p.E2392K . . . MC5R 4161 broad.mit.edu 36 18 13816203 13816203 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005913 exon1 c.G439A p.A147T . . . ROCK1 6093 broad.mit.edu 36 18 16788807 16788807 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005406 exon31 c.G3788T p.R1263I . . . ESCO1 114799 broad.mit.edu 36 18 17398265 17398265 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052911 exon7 c.G1718A p.R573Q . . . ESCO1 114799 broad.mit.edu 36 18 17407692 17407692 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052911 exon4 c.A1111G p.T371A . . . ABHD3 171586 broad.mit.edu 36 18 17536288 17536288 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138340 exon3 c.G496T p.E166X . . . MIB1 57534 broad.mit.edu 36 18 17698493 17698493 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020774 exon21 c.C2889T p.C963C . . . CTAGE1 64693 broad.mit.edu 36 18 18251615 18251615 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172241 exon1 c.C158A p.S53Y . . . RBBP8 5932 broad.mit.edu 36 18 18816307 18816307 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203291 exon7 c.A557G p.Y186C . . . LAMA3 3909 broad.mit.edu 36 18 19783811 19783811 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127718 exon33 c.G4441A p.G1481R . . . CABYR 26256 broad.mit.edu 36 18 19989716 19989716 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138644 exon4 c.G253T p.E85X . . . IMPACT 55364 broad.mit.edu 36 18 20282076 20282076 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018439 exon9 c.G690T p.Q230H . . . HRH4 59340 broad.mit.edu 36 18 20311502 20311502 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143828 exon2 c.A887G p.H296R . . . ZNF521 25925 broad.mit.edu 36 18 21059952 21059952 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015461 exon4 c.A1928G p.Y643C . . . TAF4B 6875 broad.mit.edu 36 18 22149349 22149349 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005640 exon10 c.T1991G p.I664S . . . CHST9 83539 broad.mit.edu 36 18 22750576 22750576 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031422 exon6 c.C977A p.S326Y . . . CDH2 1000 broad.mit.edu 36 18 23816951 23816951 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001792 exon14 c.T2304G p.D768E . . . CDH2 1000 broad.mit.edu 36 18 23822588 23822588 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001792 exon11 c.G1639T p.D547Y . . . CDH2 1000 broad.mit.edu 36 18 23824100 23824100 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001792 exon10 c.C1557A p.F519L . . . DSC1 1823 broad.mit.edu 36 18 26982522 26982522 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004948 exon6 c.G709T p.D237Y . . . DSG2 1829 broad.mit.edu 36 18 27379937 27379937 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001943 exon15 c.A2590G p.N864D . . . TTR 7276 broad.mit.edu 36 18 27429160 27429160 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000371 exon3 c.G280T p.D94Y . . . B4GALT6 9331 broad.mit.edu 36 18 27461069 27461069 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004775 exon7 c.G790T p.E264X . . . MEP1B 4225 broad.mit.edu 36 18 28051904 28051904 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005925 exon14 c.G2069A p.R690Q . . . MYOM1 8736 broad.mit.edu 36 18 3069252 3069252 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019856 exon33 c.G4285T p.D1429Y . . . ZNF24 7572 broad.mit.edu 36 18 31171321 31171321 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006965 exon4 c.G980T p.R327I . . . GALNT1 2589 broad.mit.edu 36 18 31523240 31523240 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A A A A Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_020474 exon6 c.A966C p.E322D . . . ELP2 55250 broad.mit.edu 36 18 32004045 32004045 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018255 exon20 c.G2098A p.D700N . . . MOCOS 55034 broad.mit.edu 36 18 32082948 32082948 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017947 exon10 c.G2026C p.V676L . . . KIAA1328 57536 broad.mit.edu 36 18 32678253 32678253 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020776 exon4 c.G322T p.E108X . . . COLEC12 81035 broad.mit.edu 36 18 336479 336479 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130386 exon5 c.T1143G p.D381E . . . PIK3C3 5289 broad.mit.edu 36 18 37901364 37901364 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002647 exon24 c.C2538T p.F846F . . . SYT4 6860 broad.mit.edu 36 18 39104373 39104373 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020783 exon4 c.G1209A p.E403E . . . ATP5A1 498 broad.mit.edu 36 18 41923911 41923911 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004046 exon4 c.G359A p.G120E . . . ST8SIA5 29906 broad.mit.edu 36 18 42526194 42526194 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013305 exon3 c.G247A p.D83N . . . SMAD2 4087 broad.mit.edu 36 18 43625745 43625745 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135937 exon9 c.G1154T p.R385I . . . ME2 4200 broad.mit.edu 36 18 46701513 46701513 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168335 exon10 c.A1014C p.Q338H . . . ELAC1 55520 broad.mit.edu 36 18 46764604 46764604 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018696 exon3 c.C298T p.R100W . . . ELAC1 55520 broad.mit.edu 36 18 46764693 46764693 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018696 exon3 c.A387T p.Q129H . . . POLI 11201 broad.mit.edu 36 18 50074065 50074065 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007195 exon10 c.A1453C p.N485H . . . STARD6 147323 broad.mit.edu 36 18 50105224 50105224 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139171 exon6 c.C499G p.L167V . . . C18orf26 284254 broad.mit.edu 36 18 50416056 50416056 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173629 exon3 c.C315T p.C105C . . . RAB27B 5874 broad.mit.edu 36 18 50707478 50707478 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004163 exon6 c.G493A p.A165T . . . WDR7 23335 broad.mit.edu 36 18 52575010 52575010 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015285 exon15 c.G2188A p.G730R . . . ST8SIA3 51046 broad.mit.edu 36 18 53175152 53175152 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015879 exon3 c.C313A p.L105I . . . ALPK2 115701 broad.mit.edu 36 18 54353149 54353149 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052947 exon5 c.G5250T p.K1750N . . . ALPK2 115701 broad.mit.edu 36 18 54354112 54354112 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052947 exon5 c.C4287T p.G1429G . . . MALT1 10892 broad.mit.edu 36 18 54552542 54552542 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173844 exon11 c.C1391A p.P464Q . . . CDH20 28316 broad.mit.edu 36 18 57357310 57357310 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031891 exon8 c.C1482A p.F494L . . . PHLPP1 23239 broad.mit.edu 36 18 58714083 58714083 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194449 exon6 c.C2303A p.S768Y . . . SERPINB4 6318 broad.mit.edu 36 18 59459183 59459183 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002974 exon5 c.A374C p.K125T . . . SERPINB4 6318 broad.mit.edu 36 18 59475060 59475060 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006919 exon7 c.C753T p.I251I . . . SERPINB2 5055 broad.mit.edu 36 18 59719999 59719999 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002575 exon6 c.C581T p.T194I . . . CLUL1 27098 broad.mit.edu 36 18 615017 615017 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014410 exon4 c.C408A p.S136S . . . CDH19 28513 broad.mit.edu 36 18 62323239 62323239 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021153 exon12 c.C2109T p.L703L . . . DSEL 92126 broad.mit.edu 36 18 63329602 63329602 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032160 exon2 c.C3254T p.S1085L . . . DSEL 92126 broad.mit.edu 36 18 63329677 63329677 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032160 exon2 c.C3179A p.S1060Y . . . DSEL 92126 broad.mit.edu 36 18 63330813 63330813 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032160 exon2 c.G2043T p.M681I . . . DSEL 92126 broad.mit.edu 36 18 63331383 63331383 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032160 exon2 c.A1473G p.G491G . . . DSEL 92126 broad.mit.edu 36 18 63332252 63332252 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032160 exon2 c.C604T p.R202X . . . ENOSF1 55556 broad.mit.edu 36 18 680630 680630 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126123 exon7 c.G291A p.E97E . . . ZNF407 55628 broad.mit.edu 36 18 70730864 70730864 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017757 exon6 c.G5131T p.E1711X . . . ZNF407 55628 broad.mit.edu 36 18 70904398 70904398 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017757 exon8 c.C5733A p.V1911V . . . ZNF516 9658 broad.mit.edu 36 18 72221119 72221119 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014643 exon4 c.G1939A p.A647T . . . ATP9B 374868 broad.mit.edu 36 18 75074969 75074969 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198531 exon11 c.C1050A p.V350V . . . PTPRM 5797 broad.mit.edu 36 18 8103585 8103585 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002845 exon12 c.C1958A p.S653Y . . . ADCYAP1 116 broad.mit.edu 36 18 898273 898273 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099733 exon4 c.G250A p.A84T . . . ANKRD12 23253 broad.mit.edu 36 18 9245953 9245953 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015208 exon9 c.A2688C p.K896N . . . TXNDC2 84203 broad.mit.edu 36 18 9876891 9876891 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098529 exon2 c.G415T p.E139X . . . TXNDC2 84203 broad.mit.edu 36 18 9878028 9878028 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098529 exon2 c.G1552A p.A518T . . . ZNF302 55900 broad.mit.edu 36 19 39865967 39865968 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001012320 exon4 c.198_199insA p.E66fs . . . SIGLEC14 100049587 broad.mit.edu 36 19 56838657 56838658 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001098612 exon6 c.1093_1094insT p.L365fs . . . S1PR5 53637 broad.mit.edu 36 19 10486529 10486529 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030760 exon2 c.G159T p.E53D . . . SMARCA4 6597 broad.mit.edu 36 19 10961016 10961016 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003072 exon7 c.G1142A p.R381Q . . . LDLR 3949 broad.mit.edu 36 19 11085056 11085056 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195802 exon8 c.T926C p.V309A . . . ELAVL3 1995 broad.mit.edu 36 19 11426374 11426374 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001420 exon7 c.C1071A p.V357V . . . ACP5 54 broad.mit.edu 36 19 11548966 11548966 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111036 exon3 c.G167A p.R56Q . . . ZNF627 199692 broad.mit.edu 36 19 11589546 11589546 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_145295 exon4 c.G1228T p.E410X . . . ZNF491 126069 broad.mit.edu 36 19 11778796 11778796 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152356 exon3 c.G1028A p.R343Q . . . ZNF491 126069 broad.mit.edu 36 19 11778976 11778976 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152356 exon3 c.G1208T p.R403I . . . ZNF763 284390 broad.mit.edu 36 19 11950902 11950902 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012753 exon4 c.C1172T p.A391V ZNF440L,central_nervous_system,brain,Substitution - coding silent,-1 . . ZNF878 729747 broad.mit.edu 36 19 12016013 12016013 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080404 exon5 c.G1344T p.G448G . . . ZNF20 7568 broad.mit.edu 36 19 12104424 12104424 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021143 exon4 c.G1577A p.R526K . . . ZNF20 7568 broad.mit.edu 36 19 12107636 12107636 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021143 exon2 c.G87T p.K29N . . . ZNF625 90589 broad.mit.edu 36 19 12117527 12117527 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145233 exon4 c.G506A p.R169Q . . . ZNF709 163051 broad.mit.edu 36 19 12435925 12435925 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152601 exon4 c.G1811A p.R604Q . . . ZNF709 163051 broad.mit.edu 36 19 12436501 12436501 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152601 exon4 c.G1235T p.R412I . . . ZNF709 163051 broad.mit.edu 36 19 12437325 12437325 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152601 exon4 c.G411T p.E137D . . . ZNF791 163049 broad.mit.edu 36 19 12600307 12600307 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153358 exon4 c.C964A p.H322N . . . BEST2 54831 broad.mit.edu 36 19 12729540 12729540 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017682 exon9 c.C1179A p.F393L . . . RTBDN 83546 broad.mit.edu 36 19 12797536 12797536 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031429 exon7 c.G770A p.S257N . . . IL27RA 9466 broad.mit.edu 36 19 14018076 14018076 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004843 exon7 c.G879A p.A293A . . . EMR3 84658 broad.mit.edu 36 19 14633866 14633866 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032571 exon4 c.C264T p.V88V . . . EMR2 30817 broad.mit.edu 36 19 14727535 14727535 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152920 exon12 c.C1167A p.I389I . . . CASP14 23581 broad.mit.edu 36 19 15027318 15027318 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012114 exon6 c.G598T p.G200X . . . OR1I1 126370 broad.mit.edu 36 19 15058903 15058903 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004713 exon1 c.C27A p.I9I . . . OR1I1 126370 broad.mit.edu 36 19 15059245 15059245 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004713 exon1 c.C369T p.F123F . . . AKAP8L 26993 broad.mit.edu 36 19 15373257 15373257 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014371 exon5 c.G520A p.D174N . . . WIZ 58525 broad.mit.edu 36 19 15398814 15398814 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021241 exon4 c.G1060T p.D354Y . . . RASAL3 64926 broad.mit.edu 36 19 15435955 15435955 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022904 exon2 c.C215A p.S72Y . . . CYP4F22 126410 broad.mit.edu 36 19 15515986 15515986 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173483 exon10 c.C1032A p.I344I . . . TPM4 7171 broad.mit.edu 36 19 16060908 16060908 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145160 exon6 c.C617A p.S206Y . . . CHERP 10523 broad.mit.edu 36 19 16513741 16513741 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006387 exon2 c.C139A p.L47I . . . GTPBP3 84705 broad.mit.edu 36 19 17310383 17310383 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032620 exon4 c.G424A p.E142K . . . SLC27A1 376497 broad.mit.edu 36 19 17458627 17458627 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198580 exon2 c.C423T p.F141F . . . FAM129C 199786 broad.mit.edu 36 19 17525282 17525282 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173544 exon16 c.C2004T p.F668F . . . UNC13A 23025 broad.mit.edu 36 19 17581822 17581822 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080421 exon41 c.G4738A p.D1580N . . . JAK3 3718 broad.mit.edu 36 19 17809823 17809823 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000215 exon12 c.G1619A p.R540H . . . LRRC25 126364 broad.mit.edu 36 19 18363933 18363933 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145256 exon2 c.C782T p.A261V . . . MAU2 23383 broad.mit.edu 36 19 19326200 19326200 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015329 exon17 c.G1585A p.A529T . . . ZNF93 81931 broad.mit.edu 36 19 19905574 19905574 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031218 exon4 c.G810A p.S270S . . . ZNF93 81931 broad.mit.edu 36 19 19905762 19905762 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031218 exon4 c.G998T p.R333I . . . ZNF626 199777 broad.mit.edu 36 19 20599272 20599272 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001076675 exon4 c.A1251C p.K417N . . . ZNF626 199777 broad.mit.edu 36 19 20599365 20599365 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001076675 exon4 c.G1158A p.T386T . . . ZNF85 7639 broad.mit.edu 36 19 20923909 20923909 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003429 exon4 c.A749C p.K250T . . . ZNF85 7639 broad.mit.edu 36 19 20924819 20924819 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003429 exon4 c.T1659C p.L553L . . . ZNF430 80264 broad.mit.edu 36 19 21031478 21031478 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172671 exon5 c.A521G p.E174G . . . ZNF431 170959 broad.mit.edu 36 19 21141008 21141008 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133473 exon3 c.G127A p.E43K . . . ZNF493 284443 broad.mit.edu 36 19 21399056 21399056 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175910 exon2 c.C1371A p.F457L . . . DOT1L 84444 broad.mit.edu 36 19 2142155 2142155 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032482 exon5 c.G409A p.G137R . . . ZNF429 353088 broad.mit.edu 36 19 21512297 21512297 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001415 exon4 c.G1602T p.E534D . . . DOT1L 84444 broad.mit.edu 36 19 2158633 2158633 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032482 exon11 c.C917T p.T306M . . . ZNF43 7594 broad.mit.edu 36 19 21793833 21793833 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003423 exon2 c.G34T p.E12X . . . ZNF208 7757 broad.mit.edu 36 19 21946362 21946362 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007153 exon4 c.G3314T p.R1105I . . . ZNF257 113835 broad.mit.edu 36 19 22063222 22063222 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033468 exon4 c.G830T p.R277I . . . ZNF676 163223 broad.mit.edu 36 19 22154701 22154701 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001411 exon3 c.G1658T p.R553I . . . ZNF676 163223 broad.mit.edu 36 19 22155708 22155708 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001411 exon3 c.A651G p.V217V . . . ZNF676 163223 broad.mit.edu 36 19 22156174 22156174 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001411 exon3 c.C185A p.S62Y . . . ZNF98 148198 broad.mit.edu 36 19 22366280 22366280 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098626 exon4 c.C1597A p.L533I . . . ZNF98 148198 broad.mit.edu 36 19 22366418 22366418 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098626 exon4 c.G1459T p.E487X . . . ZNF492 57615 broad.mit.edu 36 19 22639297 22639297 + Missense_Mutation SNP G T T rs71357911 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020855 exon4 c.G986T p.R329I . . . ZNF99 7652 broad.mit.edu 36 19 22731374 22731374 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080409 exon7 c.G2637T p.K879N . . . ZNF675 171392 broad.mit.edu 36 19 23629086 23629086 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138330 exon4 c.G489T p.K163N . . . TSHZ3 57616 broad.mit.edu 36 19 36462254 36462254 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020856 exon2 c.C285T p.N95N . . . GPATCH1 55094 broad.mit.edu 36 19 38276174 38276174 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018025 exon4 c.G364T p.D122Y . . . ZNF599 148103 broad.mit.edu 36 19 39942824 39942824 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007248 exon4 c.A722G p.D241G . . . MAG 4099 broad.mit.edu 36 19 40478466 40478466 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199216 exon4 c.G82A p.A28T . . . CD22 933 broad.mit.edu 36 19 40523766 40523766 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185100 exon7 c.G1392A p.E464E . . . CD22 933 broad.mit.edu 36 19 40528931 40528931 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185100 exon12 c.G2246T p.G749V . . . FFAR3 2865 broad.mit.edu 36 19 40542092 40542092 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005304 exon2 c.G460T p.E154X . . . DMKN 93099 broad.mit.edu 36 19 40695416 40695416 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033317 exon2 c.A543G p.A181A . . . SBSN 374897 broad.mit.edu 36 19 40709604 40709604 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166034 exon1 c.G1420T p.D474Y . . . ATP4A 495 broad.mit.edu 36 19 40745310 40745310 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000704 exon4 c.G287A p.G96D . . . ZBTB32 27033 broad.mit.edu 36 19 40898030 40898030 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014383 exon2 c.G662A p.G221D . . . U2AF1L4 199746 broad.mit.edu 36 19 40927106 40927106 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144987 exon3 c.C189T p.C63C . . . NPHS1 4868 broad.mit.edu 36 19 41013857 41013857 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004646 exon27 c.G3419A p.R1140H . . . NPHS1 4868 broad.mit.edu 36 19 41022063 41022063 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004646 exon22 c.T3025G p.Y1009D . . . APLP1 333 broad.mit.edu 36 19 41057490 41057490 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024807 exon10 c.G1223A p.R408H . . . ZFP82 284406 broad.mit.edu 36 19 41575506 41575506 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133466 exon5 c.A1576C p.K526Q . . . ZNF566 84924 broad.mit.edu 36 19 41655730 41655730 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145344 exon4 c.C155A p.P52Q . . . ZNF529 57711 broad.mit.edu 36 19 41730837 41730837 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145649 exon6 c.C463A p.H155N . . . ZNF382 84911 broad.mit.edu 36 19 41793435 41793435 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032825 exon4 c.A183G p.Q61Q . . . ZNF461 92283 broad.mit.edu 36 19 41821684 41821684 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153257 exon6 c.C1403T p.P468L . . . ODF3L2 284451 broad.mit.edu 36 19 418682 418682 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182577 exon3 c.G316A p.A106T . . . ZNF345 25850 broad.mit.edu 36 19 42060573 42060573 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003419 exon3 c.G1001T p.R334I . . . ZNF829 374899 broad.mit.edu 36 19 42074418 42074418 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037232 exon6 c.G1115T p.R372I . . . ZNF585A 199704 broad.mit.edu 36 19 42334729 42334729 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199126 exon6 c.G1747A p.E583K . . . ZNF585A 199704 broad.mit.edu 36 19 42335268 42335268 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199126 exon6 c.G1208A p.R403Q . . . ZNF585A 199704 broad.mit.edu 36 19 42335775 42335775 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199126 exon6 c.G701A p.R234Q . . . ZNF569 148266 broad.mit.edu 36 19 42596349 42596349 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152484 exon6 c.G1051T p.E351X . . . ZNF540 163255 broad.mit.edu 36 19 42795381 42795381 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152606 exon5 c.C1360A p.L454I . . . ZFP30 22835 broad.mit.edu 36 19 42818161 42818161 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014898 exon6 c.G1121T p.R374I . . . SH3GL1 6455 broad.mit.edu 36 19 4314771 4314771 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003025 exon6 c.C570T p.F190F . . . GGN 199720 broad.mit.edu 36 19 43568094 43568094 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152657 exon3 c.G1648A p.E550K . . . CHAF1A 10036 broad.mit.edu 36 19 4380561 4380561 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005483 exon9 c.G1731T p.K577N . . . LRG1 116844 broad.mit.edu 36 19 4489114 4489114 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052972 exon2 c.C882T p.F294F . . . DYRK1B 9149 broad.mit.edu 36 19 45010857 45010857 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006483 exon6 c.G727A p.E243K . . . FCGBP 8857 broad.mit.edu 36 19 45087834 45087834 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003890 exon15 c.G7403A p.R2468H . . . ZNF546 339327 broad.mit.edu 36 19 45212033 45212033 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178544 exon7 c.G1016T p.R339I . . . ZNF546 339327 broad.mit.edu 36 19 45212306 45212306 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178544 exon7 c.G1289A p.R430Q . . . ZNF780B 163131 broad.mit.edu 36 19 45233732 45233732 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005851 exon5 c.C874A p.L292I . . . AKT2 208 broad.mit.edu 36 19 45440306 45440306 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001626 exon5 c.C416T p.A139V . . . SHKBP1 92799 broad.mit.edu 36 19 45775363 45775363 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138392 exon4 c.G247T p.E83X . . . CYP2A7 1549 broad.mit.edu 36 19 46078303 46078303 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000764 exon3 c.C414T p.F138F . . . AXL 558 broad.mit.edu 36 19 46418931 46418931 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021913 exon3 c.T349C p.C117R . . . AXL 558 broad.mit.edu 36 19 46454280 46454280 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021913 exon18 c.G2120A p.R707H . . . CEACAM7 1087 broad.mit.edu 36 19 46882937 46882937 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006890 exon2 c.C120T p.V40V . . . ARHGEF1 9138 broad.mit.edu 36 19 47084177 47084177 + Missense_Mutation SNP C G G rs41306984 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198977 exon3 c.C99G p.N33K . . . TMEM145 284339 broad.mit.edu 36 19 47511011 47511011 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173633 exon6 c.G447T p.E149D . . . PSG8 440533 broad.mit.edu 36 19 47954029 47954029 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130168 exon2 c.C308T p.A103V . . . PSG9 5678 broad.mit.edu 36 19 48454404 48454404 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002784 exon5 c.C1033T p.R345C . . . ARRDC5 645432 broad.mit.edu 36 19 4847697 4847697 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080523 exon2 c.G487T p.E163X . . . ZNF283 284349 broad.mit.edu 36 19 49043189 49043189 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181845 exon7 c.G596T p.R199I . . . ZNF283 284349 broad.mit.edu 36 19 49043273 49043273 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181845 exon7 c.G680T p.R227I . . . ZNF283 284349 broad.mit.edu 36 19 49043768 49043768 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181845 exon7 c.G1175A p.R392Q . . . ZNF223 7766 broad.mit.edu 36 19 49262773 49262773 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013361 exon5 c.A952G p.T318A . . . ZNF284 342909 broad.mit.edu 36 19 49281932 49281932 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037813 exon5 c.A461C p.K154T . . . ZFP112 7771 broad.mit.edu 36 19 49536532 49536532 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083335 exon3 c.G18T p.E6D . . . ZNF180 7733 broad.mit.edu 36 19 49673000 49673000 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013256 exon5 c.G1538T p.R513I . . . ZNF180 7733 broad.mit.edu 36 19 49673336 49673336 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013256 exon5 c.G1202T p.R401I . . . ZNF180 7733 broad.mit.edu 36 19 49673420 49673420 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013256 exon5 c.G1118T p.R373I . . . EXOC3L2 90332 broad.mit.edu 36 19 50419991 50419991 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138568 exon6 c.C425T p.A142V . . . ERCC1 2067 broad.mit.edu 36 19 50608765 50608765 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_202001 exon8 c.C853A p.L285M . . . RTN2 6253 broad.mit.edu 36 19 50690025 50690025 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_206900 exon3 c.C158T p.S53L . . . PPM1N 147699 broad.mit.edu 36 19 50697150 50697150 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080401 exon5 c.G1260A p.T420T . . . PGLYRP1 8993 broad.mit.edu 36 19 51217977 51217977 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005091 exon1 c.A143C p.Q48P . . . CCDC8 83987 broad.mit.edu 36 19 51606491 51606491 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032040 exon1 c.A1417G p.K473E . . . PNMAL1 55228 broad.mit.edu 36 19 51666017 51666017 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018215 exon2 c.T116C p.I39T . . . PTPRS 5802 broad.mit.edu 36 19 5225310 5225310 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002850 exon3 c.C137T p.S46L . . . SAE1 10055 broad.mit.edu 36 19 52348069 52348069 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005500 exon4 c.C459A p.F153L . . . NAPA 8775 broad.mit.edu 36 19 52695753 52695753 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003827 exon3 c.G244A p.A82T . . . CRX 1406 broad.mit.edu 36 19 53034914 53034914 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000554 exon4 c.G778A p.A260T . . . PLA2G4C 8605 broad.mit.edu 36 19 53299679 53299679 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159323 exon4 c.G235A p.A79T . . . CARD8 22900 broad.mit.edu 36 19 53425560 53425560 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184902 exon10 c.G982A p.E328K . . . KDELR1 10945 broad.mit.edu 36 19 53579365 53579365 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006801 exon4 c.G538A p.A180T . . . HRC 3270 broad.mit.edu 36 19 54349968 54349968 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002152 exon1 c.C339T p.V113V . . . TEAD2 8463 broad.mit.edu 36 19 54550228 54550228 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003598 exon6 c.G516A p.W172X . . . VRK3 51231 broad.mit.edu 36 19 55183443 55183443 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025778 exon11 c.G1065T p.Q355H . . . MYBPC2 4606 broad.mit.edu 36 19 55649124 55649124 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004533 exon17 c.G1785T p.E595D . . . KLK4 9622 broad.mit.edu 36 19 56103709 56103709 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004917 exon3 c.C413T p.A138V . . . KLK5 25818 broad.mit.edu 36 19 56143824 56143824 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077492 exon5 c.C610A p.L204I . . . KLK9 284366 broad.mit.edu 36 19 56201562 56201562 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012315 exon3 c.C430A p.L144I . . . KLK13 26085 broad.mit.edu 36 19 56253705 56253705 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015596 exon4 c.C547T p.L183F . . . SIGLEC7 27036 broad.mit.edu 36 19 56339725 56339725 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014385 exon2 c.G684A p.T228T . . . LONP1 9361 broad.mit.edu 36 19 5645431 5645431 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004793 exon15 c.G2287A p.G763S . . . CLDND2 125875 broad.mit.edu 36 19 56562529 56562529 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152353 exon3 c.C424A p.L142I . . . LIM2 3982 broad.mit.edu 36 19 56575575 56575575 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161748 exon4 c.C456T p.F152F . . . CEACAM18 729767 broad.mit.edu 36 19 56675404 56675404 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080405 exon3 c.C241A p.L81M . . . SIGLEC6 946 broad.mit.edu 36 19 56725001 56725001 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001245 exon5 c.C801T p.G267G . . . ZNF175 7728 broad.mit.edu 36 19 56782880 56782880 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007147 exon5 c.G1484A p.R495Q . . . FPR1 2357 broad.mit.edu 36 19 56941518 56941518 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193306 exon3 c.C542T p.S181L . . . ZNF350 59348 broad.mit.edu 36 19 57160589 57160589 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021632 exon5 c.G929A p.R310Q . . . ZNF615 284370 broad.mit.edu 36 19 57188630 57188630 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198480 exon6 c.G1511A p.R504Q . . . ZNF432 9668 broad.mit.edu 36 19 57229466 57229466 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014650 exon5 c.G1278T p.E426D . . . TMEM146 257062 broad.mit.edu 36 19 5729450 5729450 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152784 exon22 c.C2160A p.V720V . . . ZNF616 90317 broad.mit.edu 36 19 57319079 57319079 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178523 exon3 c.C48A p.F16L . . . ZNF836 162962 broad.mit.edu 36 19 57350204 57350204 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102657 exon5 c.G2544T p.K848N . . . ZNF836 162962 broad.mit.edu 36 19 57351683 57351683 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102657 exon5 c.G1065T p.E355D . . . ZNF766 90321 broad.mit.edu 36 19 57486148 57486148 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010851 exon4 c.G1292A p.R431K . . . ZNF610 162963 broad.mit.edu 36 19 57561171 57561171 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173530 exon6 c.G728A p.R243H . . . ZNF528 84436 broad.mit.edu 36 19 57601641 57601641 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032423 exon6 c.T204C p.T68T . . . ZNF528 84436 broad.mit.edu 36 19 57610753 57610753 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032423 exon7 c.G836A p.R279Q . . . ZNF528 84436 broad.mit.edu 36 19 57611376 57611376 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032423 exon7 c.C1459A p.H487N . . . ZNF611 81856 broad.mit.edu 36 19 57900195 57900195 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161501 exon5 c.G1718T p.R573I . . . ZNF611 81856 broad.mit.edu 36 19 57901479 57901479 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161501 exon5 c.A434C p.N145T . . . ZNF600 162966 broad.mit.edu 36 19 57961420 57961420 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198457 exon3 c.G1401T p.E467D . . . ZNF600 162966 broad.mit.edu 36 19 57961856 57961856 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198457 exon3 c.G965T p.R322I . . . ZNF160 90338 broad.mit.edu 36 19 58264300 58264300 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198893 exon7 c.C1299A p.V433V . . . ZNF415 55786 broad.mit.edu 36 19 58304631 58304631 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136038 exon4 c.A479G p.Y160C . . . ZNF347 84671 broad.mit.edu 36 19 58337343 58337343 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172675 exon5 c.C553T p.L185F . . . ZNF665 79788 broad.mit.edu 36 19 58359682 58359682 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024733 exon4 c.C1873T p.P625S . . . ZNF665 79788 broad.mit.edu 36 19 58360962 58360962 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024733 exon4 c.G593T p.R198I . . . ZNF677 342926 broad.mit.edu 36 19 58432440 58432440 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182609 exon5 c.G1352T p.R451I . . . ZNF677 342926 broad.mit.edu 36 19 58433437 58433437 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182609 exon5 c.G355T p.G119X . . . ZNF677 342926 broad.mit.edu 36 19 58433578 58433578 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182609 exon5 c.A214C p.N72H . . . NLRP12 91662 broad.mit.edu 36 19 59000377 59000377 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144687 exon5 c.C2383T p.R795W . . . CNOT3 4849 broad.mit.edu 36 19 59343810 59343810 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014516 exon11 c.C1010T p.T337I . . . LILRB3 11025 broad.mit.edu 36 19 59414470 59414470 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006864 exon9 c.G1476A p.E492E . . . LILRB5 10990 broad.mit.edu 36 19 59448210 59448210 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081442 exon10 c.C1489T p.P497S . . . LILRA3 11026 broad.mit.edu 36 19 59491879 59491879 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006865 exon7 c.C1299T p.S433S . . . KIR3DL1 3811 broad.mit.edu 36 19 60024984 60024984 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013289 exon5 c.C808T p.R270C . . . SYT5 6861 broad.mit.edu 36 19 60378095 60378095 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003180 exon7 c.A793C p.N265H . . . BRSK1 84446 broad.mit.edu 36 19 60490254 60490254 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032430 exon2 c.G204T p.E68D . . . BRSK1 84446 broad.mit.edu 36 19 60506506 60506506 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032430 exon11 c.G1044T p.K348N . . . NLRP11 204801 broad.mit.edu 36 19 61004905 61004905 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145007 exon7 c.C2016A p.V672V . . . NLRP4 147945 broad.mit.edu 36 19 61055459 61055459 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_134444 exon2 c.A201C p.Q67H . . . NLRP4 147945 broad.mit.edu 36 19 61061310 61061310 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_134444 exon3 c.C739T p.L247L . . . NLRP13 126204 broad.mit.edu 36 19 61099173 61099173 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176810 exon11 c.C3082T p.L1028L . . . ZNF583 147949 broad.mit.edu 36 19 61626870 61626870 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159860 exon5 c.G1031T p.R344I . . . ZNF471 57573 broad.mit.edu 36 19 61727878 61727878 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020813 exon5 c.A630C p.E210D . . . ZNF471 57573 broad.mit.edu 36 19 61728093 61728093 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_020813 exon5 c.G845T p.R282I . . . ZNF471 57573 broad.mit.edu 36 19 61728616 61728616 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020813 exon5 c.G1368A p.E456E . . . ZFP28 140612 broad.mit.edu 36 19 61752191 61752191 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020828 exon5 c.C576T p.C192C . . . ZNF470 388566 broad.mit.edu 36 19 61780746 61780746 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001668 exon6 c.G1137A p.Q379Q . . . ZNF835 90485 broad.mit.edu 36 19 61867283 61867283 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005850 exon2 c.G1162A p.D388N . . . PEG3 5178 broad.mit.edu 36 19 62018600 62018600 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146186 exon7 c.C3022T p.R1008C . . . PEG3 5178 broad.mit.edu 36 19 62020676 62020676 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146186 exon7 c.G946T p.E316X . . . PEG3 5178 broad.mit.edu 36 19 62026791 62026791 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146186 exon2 c.C463T p.H155Y . . . ZIM3 114026 broad.mit.edu 36 19 62338114 62338114 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052882 exon5 c.G1403T p.R468I . . . ZIM3 114026 broad.mit.edu 36 19 62340120 62340120 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052882 exon4 c.C174A p.I58I . . . AURKC 6795 broad.mit.edu 36 19 62435833 62435833 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003160 exon4 c.G306T p.E102D . . . ZNF543 125919 broad.mit.edu 36 19 62531471 62531471 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213598 exon4 c.C829A p.H277N . . . ZNF543 125919 broad.mit.edu 36 19 62531859 62531859 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213598 exon4 c.G1217A p.R406H . . . ZNF17 7565 broad.mit.edu 36 19 62624383 62624383 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006959 exon3 c.C1711T p.R571W . . . ACER1 125981 broad.mit.edu 36 19 6263503 6263503 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133492 exon2 c.A101G p.N34S . . . VN1R1 57191 broad.mit.edu 36 19 62659033 62659033 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020633 exon1 c.G634A p.A212T . . . ZNF772 400720 broad.mit.edu 36 19 62677094 62677094 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024596 exon5 c.G830A p.R277H . . . ZNF418 147686 broad.mit.edu 36 19 63129346 63129346 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133460 exon4 c.G2015T p.R672I . . . ZNF256 10172 broad.mit.edu 36 19 63145614 63145614 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005773 exon3 c.A374C p.K125T . . . C19orf18 147685 broad.mit.edu 36 19 63169795 63169795 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152474 exon4 c.C286T p.P96S . . . ZNF135 7694 broad.mit.edu 36 19 63270644 63270644 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003436 exon5 c.A1016C p.E339A . . . ZNF584 201514 broad.mit.edu 36 19 63620482 63620482 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173548 exon4 c.G785T p.R262M . . . SLC25A41 284427 broad.mit.edu 36 19 6381170 6381170 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173637 exon3 c.C366A p.V122V . . . CD70 970 broad.mit.edu 36 19 6541915 6541915 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001252 exon1 c.C99T p.C33C . . . C3 718 broad.mit.edu 36 19 6628953 6628953 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000064 exon41 c.A4932G p.K1644K . . . C3 718 broad.mit.edu 36 19 6645611 6645611 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000064 exon24 c.C2985T p.V995V . . . EMR1 2015 broad.mit.edu 36 19 6841528 6841528 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001974 exon2 c.G68T p.R23I . . . EMR1 2015 broad.mit.edu 36 19 6867286 6867286 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001974 exon12 c.G1327T p.E443X . . . XAB2 56949 broad.mit.edu 36 19 7598702 7598702 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020196 exon3 c.G236A p.R79Q . . . CD209 30835 broad.mit.edu 36 19 7716873 7716873 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144894 exon2 c.G147T p.E49D . . . SNAPC2 6618 broad.mit.edu 36 19 7893206 7893206 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003083 exon4 c.G659A p.G220D . . . MYO1F 4542 broad.mit.edu 36 19 8497709 8497709 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012335 exon23 c.C2585T p.A862V . . . ZNF558 148156 broad.mit.edu 36 19 8783049 8783049 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144693 exon6 c.G1117T p.E373X . . . MBD3L1 85509 broad.mit.edu 36 19 8814679 8814679 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145208 exon1 c.C325A p.L109I . . . MUC16 94025 broad.mit.edu 36 19 8876680 8876680 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon29 c.G38143A p.D12715N . . . MUC16 94025 broad.mit.edu 36 19 8908925 8908925 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon5 c.G33706T p.D11236Y . . . MUC16 94025 broad.mit.edu 36 19 8910274 8910274 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon5 c.C32357T p.S10786L . . . MUC16 94025 broad.mit.edu 36 19 8910458 8910458 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon5 c.C32173T p.P10725S . . . MUC16 94025 broad.mit.edu 36 19 8917421 8917421 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.C31025A p.S10342Y . . . MUC16 94025 broad.mit.edu 36 19 8918561 8918561 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.C29885A p.S9962Y . . . MUC16 94025 broad.mit.edu 36 19 8922151 8922151 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.C26295A p.I8765I . . . MUC16 94025 broad.mit.edu 36 19 8923107 8923107 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.G25339T p.E8447X . . . MUC16 94025 broad.mit.edu 36 19 8923246 8923246 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.C25200A p.F8400L . . . MUC16 94025 broad.mit.edu 36 19 8923987 8923987 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.C24459A p.V8153V . . . MUC16 94025 broad.mit.edu 36 19 8927497 8927497 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.C20949A p.V6983V . . . MUC16 94025 broad.mit.edu 36 19 8933279 8933279 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.C15167A p.S5056Y . . . MUC16 94025 broad.mit.edu 36 19 8937314 8937314 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.C11132A p.S3711Y . . . MUC16 94025 broad.mit.edu 36 19 8943748 8943748 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon1 c.G9067A p.A3023T . . . MUC16 94025 broad.mit.edu 36 19 8946764 8946764 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon1 c.G6051T p.E2017D . . . MUC16 94025 broad.mit.edu 36 19 8949345 8949345 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon1 c.C3470A p.S1157Y . . . ZNF699 374879 broad.mit.edu 36 19 9267286 9267286 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198535 exon5 c.T1794C p.C598C . . . ZNF699 374879 broad.mit.edu 36 19 9268184 9268184 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198535 exon5 c.G896T p.R299I . . . ZNF266 10781 broad.mit.edu 36 19 9385066 9385066 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006631 exon11 c.G1535A p.R512Q . . . ZNF266 10781 broad.mit.edu 36 19 9385570 9385570 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006631 exon11 c.G1031A p.R344Q . . . ZNF560 147741 broad.mit.edu 36 19 9438428 9438428 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152476 exon10 c.G2195A p.R732Q . . . ZNF560 147741 broad.mit.edu 36 19 9439674 9439674 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152476 exon10 c.G949T p.E317X . . . ZNF121 7675 broad.mit.edu 36 19 9538298 9538298 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008727 exon4 c.G491A p.R164Q . . . ZNF562 54811 broad.mit.edu 36 19 9624872 9624872 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130032 exon6 c.A1034C p.E345A . . . ZNF846 162993 broad.mit.edu 36 19 9729918 9729918 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077624 exon6 c.G835T p.E279X . . . GAMT 2593 broad.mit.edu 36 19 1349846 1349846 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_138924 exon5 c.639delT p.A213fs . . . LILRA2 11027 broad.mit.edu 36 19 59778203 59778203 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130917 exon4 c.546delG p.V182fs . . . ZNF826P 664701 broad.mit.edu 36 19 20369159 20369159 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . AGL 178 broad.mit.edu 36 1 100148912 100148912 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000645 exon26 c.C3706T p.R1236C . . . CCDC76 54482 broad.mit.edu 36 1 100379081 100379081 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019083 exon7 c.T587C p.L196S . . . LRRC39 127495 broad.mit.edu 36 1 100393211 100393211 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144620 exon8 c.G796T p.E266X . . . COL11A1 1301 broad.mit.edu 36 1 103118048 103118048 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001854 exon66 c.G5053T p.D1685Y . . . COL11A1 1301 broad.mit.edu 36 1 103264006 103264006 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080629 exon6 c.A871C p.K291Q . . . COL11A1 1301 broad.mit.edu 36 1 103312861 103312861 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001854 exon4 c.G552T p.K184N . . . SLC25A24 29957 broad.mit.edu 36 1 108544209 108544209 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013386 exon1 c.G75T p.E25D . . . PRPF38B 55119 broad.mit.edu 36 1 109043626 109043626 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018061 exon6 c.C1102A p.R368S . . . GPSM2 29899 broad.mit.edu 36 1 109266669 109266669 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013296 exon13 c.C1548T p.C516C . . . CLCC1 23155 broad.mit.edu 36 1 109283795 109283795 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001048210 exon9 c.G1027T p.A343S . . . C1orf127 148345 broad.mit.edu 36 1 10936782 10936782 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170754 exon10 c.G980A p.C327Y . . . CYB561D1 284613 broad.mit.edu 36 1 109839324 109839324 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182580 exon2 c.C185T p.A62V . . . MASP2 10747 broad.mit.edu 36 1 11009662 11009662 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006610 exon11 c.A1928T p.E643V . . . EPS8L3 79574 broad.mit.edu 36 1 110097298 110097298 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139053 exon13 c.C1167A p.F389L . . . EXOSC10 5394 broad.mit.edu 36 1 11070140 11070140 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001998 exon9 c.T1041C p.S347S . . . KCNA10 3744 broad.mit.edu 36 1 110862225 110862225 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005549 exon1 c.G708T p.E236D . . . KCNA2 3737 broad.mit.edu 36 1 110948858 110948858 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004974 exon2 c.G70T p.D24Y . . . KCNA3 3738 broad.mit.edu 36 1 111017747 111017747 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002232 exon1 c.T1208C p.F403S . . . MTOR 2475 broad.mit.edu 36 1 11117108 11117108 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004958 exon37 c.C5133T p.I1711I . . . CD53 963 broad.mit.edu 36 1 111236546 111236546 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000560 exon3 c.C120T p.F40F . . . DENND2D 79961 broad.mit.edu 36 1 111540147 111540147 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024901 exon6 c.T559C p.F187L . . . CHIA 27159 broad.mit.edu 36 1 111664570 111664570 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201653 exon12 c.C1390T p.L464F . . . OVGP1 5016 broad.mit.edu 36 1 111769551 111769551 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002557 exon4 c.C294T p.G98G . . . DDX20 11218 broad.mit.edu 36 1 112110390 112110390 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007204 exon11 c.G1821T p.E607D . . . KCND3 3752 broad.mit.edu 36 1 112124848 112124848 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004980 exon4 c.C1358T p.A453V . . . UBIAD1 29914 broad.mit.edu 36 1 11256464 11256464 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013319 exon1 c.G289A p.A97T . . . MAGI3 260425 broad.mit.edu 36 1 113998095 113998095 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152900 exon15 c.T2561C p.L854S . . . RSBN1 54665 broad.mit.edu 36 1 114110223 114110223 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018364 exon7 c.G2311A p.D771N . . . PTPN22 26191 broad.mit.edu 36 1 114182096 114182096 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012411 exon11 c.G1284T p.E428D . . . AP4B1 10717 broad.mit.edu 36 1 114244216 114244216 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006594 exon6 c.A947C p.K316T . . . DCLRE1B 64858 broad.mit.edu 36 1 114255669 114255669 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022836 exon4 c.G932A p.S311N . . . PTCHD2 57540 broad.mit.edu 36 1 11514308 11514308 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020780 exon17 c.G3329A p.G1110D . . . SYCP1 6847 broad.mit.edu 36 1 115220254 115220254 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003176 exon10 c.G699A p.E233E . . . TSHB 7252 broad.mit.edu 36 1 115377638 115377638 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000549 exon2 c.C132T p.T44T . . . TSPAN2 10100 broad.mit.edu 36 1 115417084 115417084 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005725 exon2 c.C137A p.S46X . . . CD101 9398 broad.mit.edu 36 1 117362306 117362306 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004258 exon6 c.A1618C p.S540R . . . SPAG17 200162 broad.mit.edu 36 1 118332273 118332273 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206996 exon39 c.G5599A p.D1867N . . . SPAG17 200162 broad.mit.edu 36 1 118340641 118340641 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206996 exon34 c.T4928C p.F1643S . . . WARS2 10352 broad.mit.edu 36 1 119377107 119377107 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015836 exon6 c.T1033C p.L345L . . . HAO2 51179 broad.mit.edu 36 1 119725302 119725302 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016527 exon2 c.T71G p.F24C . . . NBPF7 343505 broad.mit.edu 36 1 120184429 120184429 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001047980 exon4 c.T600A p.D200E . . . ADAM30 11085 broad.mit.edu 36 1 120238400 120238400 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021794 exon1 c.C2083T p.R695C . . . ADAM30 11085 broad.mit.edu 36 1 120239542 120239542 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021794 exon1 c.C941A p.S314Y . . . NOTCH2 4853 broad.mit.edu 36 1 120262557 120262557 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024408 exon32 c.A5924G p.D1975G . . . NOTCH2 4853 broad.mit.edu 36 1 120265951 120265951 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024408 exon29 c.C5218A p.L1740I . . . VPS13D 55187 broad.mit.edu 36 1 12491587 12491587 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018156 exon69 c.C13014T p.Y4338Y . . . PRAMEF1 65121 broad.mit.edu 36 1 12778642 12778642 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023013 exon4 c.G1335A p.R445R . . . PRAMEF8 391002 broad.mit.edu 36 1 12902588 12902588 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012277 exon3 c.G1193A p.R398H . . . PDE4DIP 9659 broad.mit.edu 36 1 143623271 143623271 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198832 exon19 c.A2393G p.K798R . . . RBM8A 9939 broad.mit.edu 36 1 144220397 144220397 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005105 exon5 c.A467C p.K156T . . . RNF115 27246 broad.mit.edu 36 1 144396000 144396000 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014455 exon7 c.C632A p.S211Y . . . RNF115 27246 broad.mit.edu 36 1 144399563 144399563 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014455 exon9 c.C901T p.R301X . . . PDZK1 5174 broad.mit.edu 36 1 144463880 144463880 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002614 exon5 c.G556A p.E186K . . . BCL9 607 broad.mit.edu 36 1 145558838 145558838 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004326 exon8 c.C2253T p.R751R . . . BCL9 607 broad.mit.edu 36 1 145560772 145560772 + Nonsense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004326 exon9 c.T2979G p.Y993X . . . VPS45 11311 broad.mit.edu 36 1 148321520 148321520 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007259 exon10 c.C1033T p.R345W . . . HORMAD1 84072 broad.mit.edu 36 1 148956263 148956263 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199829 exon3 c.C153T p.C51C . . . CGN 57530 broad.mit.edu 36 1 149757800 149757800 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020770 exon2 c.G181A p.A61T . . . SNX27 81609 broad.mit.edu 36 1 149878049 149878049 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030918 exon2 c.G373A p.E125K . . . CELF3 11189 broad.mit.edu 36 1 149945007 149945007 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007185 exon11 c.G1185T p.E395D . . . TCHHL1 126637 broad.mit.edu 36 1 150326089 150326089 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008536 exon3 c.C693A p.I231I . . . HRNR 388697 broad.mit.edu 36 1 150458770 150458770 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009931 exon3 c.C1959A p.G653G . . . FLG 2312 broad.mit.edu 36 1 150548226 150548226 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002016 exon3 c.G5760T p.Q1920H . . . FLG 2312 broad.mit.edu 36 1 150553151 150553151 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002016 exon3 c.A835G p.T279A . . . IVL 3713 broad.mit.edu 36 1 151150365 151150365 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005547 exon2 c.C1468A p.L490M . . . SPRR3 6707 broad.mit.edu 36 1 151242280 151242280 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001097589 exon2 c.C160T p.P54S . . . SPRR2B 6701 broad.mit.edu 36 1 151309742 151309742 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017418 exon3 c.G198T p.K66N . . . NPR1 4881 broad.mit.edu 36 1 151928384 151928384 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000906 exon17 c.G2661A p.A887A . . . NUP210L 91181 broad.mit.edu 36 1 152366463 152366463 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207308 exon9 c.T1133C p.V378A . . . TDRD10 126668 broad.mit.edu 36 1 152786521 152786521 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182499 exon12 c.C965T p.S322L . . . CHRNB2 1141 broad.mit.edu 36 1 152810391 152810391 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000748 exon5 c.G468T p.K156N . . . ADAR 103 broad.mit.edu 36 1 152823930 152823930 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015841 exon15 c.G3522T p.K1174N . . . CKS1B 1163 broad.mit.edu 36 1 153213860 153213860 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001826 exon1 c.A15C p.Q5H . . . ASH1L 55870 broad.mit.edu 36 1 153590993 153590993 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018489 exon16 c.C7108T p.R2370C . . . ASH1L 55870 broad.mit.edu 36 1 153594134 153594134 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018489 exon14 c.C6826T p.R2276X . . . ASH1L 55870 broad.mit.edu 36 1 153715381 153715381 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018489 exon3 c.C3904T p.R1302W . . . YY1AP1 55249 broad.mit.edu 36 1 153896821 153896821 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198901 exon10 c.T1504G p.L502V . . . IQGAP3 128239 broad.mit.edu 36 1 154765339 154765339 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178229 exon35 c.G4564A p.D1522N . . . INSRR 3645 broad.mit.edu 36 1 155078121 155078121 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014215 exon20 c.T3487C p.S1163P . . . PEAR1 375033 broad.mit.edu 36 1 155143284 155143284 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080471 exon6 c.G632T p.R211I . . . CD1C 911 broad.mit.edu 36 1 156527576 156527576 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001765 exon2 c.C90A p.V30V . . . OR10T2 128360 broad.mit.edu 36 1 156635021 156635021 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004475 exon1 c.C860A p.P287H . . . CELA2B 51032 broad.mit.edu 36 1 15681385 15681385 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015849 exon4 c.A266G p.N89S . . . OR10X1 128367 broad.mit.edu 36 1 156816040 156816040 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004477 exon1 c.A274G p.T92A . . . SPTA1 6708 broad.mit.edu 36 1 156884994 156884994 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003126 exon26 c.C3643A p.L1215M . . . SPTA1 6708 broad.mit.edu 36 1 156919835 156919835 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003126 exon3 c.A340G p.T114A . . . OR6N1 128372 broad.mit.edu 36 1 157002724 157002724 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005185 exon1 c.G373T p.A125S . . . MNDA 4332 broad.mit.edu 36 1 157078592 157078592 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002432 exon2 c.C25A p.L9I . . . CADM3 57863 broad.mit.edu 36 1 157429856 157429856 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021189 exon5 c.C504A p.I168I . . . APCS 325 broad.mit.edu 36 1 157824762 157824762 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001639 exon2 c.C312T p.I104I . . . SLAMF8 56833 broad.mit.edu 36 1 158066414 158066414 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020125 exon2 c.C175T p.L59F . . . CASQ1 844 broad.mit.edu 36 1 158437748 158437748 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001231 exon11 c.C1149T p.G383G . . . DCAF8 50717 broad.mit.edu 36 1 158459116 158459116 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015726 exon11 c.G1389T p.E463D . . . DCAF8 50717 broad.mit.edu 36 1 158476721 158476721 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015726 exon4 c.G113A p.G38D . . . RSC1A1 6248 broad.mit.edu 36 1 15859253 15859253 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006511 exon1 c.C303T p.S101S . . . CD84 8832 broad.mit.edu 36 1 158787369 158787369 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184882 exon4 c.G499T p.E167X . . . CD84 8832 broad.mit.edu 36 1 158802053 158802053 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184881 exon2 c.C153A p.I51I . . . PPOX 5498 broad.mit.edu 36 1 159405478 159405478 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000309 exon7 c.C688T p.R230C . . . APOA2 336 broad.mit.edu 36 1 159458864 159458864 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001643 exon4 c.C258A p.F86L . . . MPZ 4359 broad.mit.edu 36 1 159543300 159543300 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000530 exon3 c.C270T p.D90D . . . HSPA6 3310 broad.mit.edu 36 1 159761942 159761942 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002155 exon1 c.C870T p.F290F . . . SH2D1B 117157 broad.mit.edu 36 1 160648346 160648346 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053282 exon1 c.C85A p.L29I . . . DDR2 4921 broad.mit.edu 36 1 161006899 161006899 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014796 exon13 c.G1477A p.E493K . . . SPEN 23013 broad.mit.edu 36 1 16127232 16127232 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015001 exon11 c.G1910A p.R637Q . . . FBXO42 54455 broad.mit.edu 36 1 16449900 16449900 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018994 exon10 c.C2006A p.S669Y . . . POGK 57645 broad.mit.edu 36 1 165085134 165085134 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017542 exon5 c.C694T p.R232X . . . DCAF6 55827 broad.mit.edu 36 1 166202521 166202521 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198956 exon3 c.G190T p.E64X . . . TIPRL 261726 broad.mit.edu 36 1 166419874 166419874 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031800 exon2 c.C215T p.A72V . . . NBPF1 55672 broad.mit.edu 36 1 16763152 16763152 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017940 exon29 c.G3298T p.E1100X . . . C1orf114 57821 broad.mit.edu 36 1 167657692 167657692 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021179 exon3 c.C601A p.L201I . . . NBPF1 55672 broad.mit.edu 36 1 16786305 16786305 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017940 exon11 c.A605G p.D202G . . . SELE 6401 broad.mit.edu 36 1 167968395 167968395 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000450 exon3 c.G406A p.A136T . . . C1orf112 55732 broad.mit.edu 36 1 168059232 168059232 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018186 exon10 c.A843G p.I281M . . . GORAB 92344 broad.mit.edu 36 1 168775009 168775009 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146039 exon2 c.G171T p.K57N . . . FMO3 2328 broad.mit.edu 36 1 169351981 169351981 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001002294 exon8 c.C1193A p.T398N . . . BAT2L2 23215 broad.mit.edu 36 1 169822942 169822942 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015172 exon31 c.T7920C p.I2640I . . . METTL13 51603 broad.mit.edu 36 1 170019581 170019581 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007239 exon2 c.G232A p.D78N . . . DNM3 26052 broad.mit.edu 36 1 170489381 170489381 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015569 exon15 c.C1705T p.R569W . . . C1orf9 51430 broad.mit.edu 36 1 170824810 170824810 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014283 exon18 c.G1946A p.R649Q . . . TNFSF4 7292 broad.mit.edu 36 1 171422429 171422429 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003326 exon3 c.C401T p.S134F . . . SLC9A11 284525 broad.mit.edu 36 1 171769543 171769543 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178527 exon17 c.G1991T p.R664M . . . ZBTB37 84614 broad.mit.edu 36 1 172106506 172106506 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122770 exon3 c.C520T p.R174W . . . RC3H1 149041 broad.mit.edu 36 1 172183307 172183307 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172071 exon14 c.G2560A p.D854N . . . MRPS14 63931 broad.mit.edu 36 1 173254265 173254265 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022100 exon2 c.A116C p.K39T . . . TNN 63923 broad.mit.edu 36 1 173313232 173313232 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022093 exon2 c.C55T p.L19F . . . TNR 7143 broad.mit.edu 36 1 173591276 173591276 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003285 exon17 c.G3235A p.D1079N . . . TNR 7143 broad.mit.edu 36 1 173599505 173599505 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003285 exon13 c.C2669A p.S890Y . . . TNR 7143 broad.mit.edu 36 1 173602980 173602980 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003285 exon10 c.G2040T p.M680I . . . PADI1 29943 broad.mit.edu 36 1 17424902 17424902 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013358 exon5 c.C418T p.R140C . . . PAPPA2 60676 broad.mit.edu 36 1 175001454 175001454 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020318 exon15 c.A4181G p.D1394G . . . ASTN1 460 broad.mit.edu 36 1 175260479 175260479 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004319 exon6 c.G1133A p.R378Q . . . C1orf49 84066 broad.mit.edu 36 1 176756183 176756183 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170723 exon6 c.G330T p.K110N . . . RALGPS2 55103 broad.mit.edu 36 1 177069239 177069239 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152663 exon8 c.G538T p.E180X . . . ANGPTL1 9068 broad.mit.edu 36 1 177101394 177101394 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004673 exon3 c.G141T p.K47N . . . XPR1 9213 broad.mit.edu 36 1 179039335 179039335 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135669 exon4 c.T412C p.F138L . . . MR1 3140 broad.mit.edu 36 1 179284880 179284880 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001531 exon3 c.C137T p.S46L . . . CACNA1E 777 broad.mit.edu 36 1 180032509 180032509 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000721 exon46 c.C6162T p.V2054V . . . DHX9 1660 broad.mit.edu 36 1 181102289 181102289 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001357 exon13 c.C1420T p.R474X . . . DHX9 1660 broad.mit.edu 36 1 181113916 181113916 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001357 exon20 c.G2336A p.R779Q . . . LAMC1 3915 broad.mit.edu 36 1 181366224 181366224 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002293 exon19 c.C3403T p.R1135C . . . GLT25D2 23127 broad.mit.edu 36 1 182181225 182181225 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015101 exon9 c.C1233T p.I411I . . . EDEM3 80267 broad.mit.edu 36 1 182938571 182938571 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025191 exon19 c.C2386T p.R796X . . . C1orf26 54823 broad.mit.edu 36 1 183440548 183440548 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105518 exon12 c.C1763A p.S588Y . . . HMCN1 83872 broad.mit.edu 36 1 184348687 184348687 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon72 c.G11110T p.E3704X . . . HMCN1 83872 broad.mit.edu 36 1 184381213 184381213 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon92 c.C14322T p.N4774N . . . TPR 7175 broad.mit.edu 36 1 184595594 184595594 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003292 exon12 c.C1349A p.A450D . . . TPR 7175 broad.mit.edu 36 1 184610654 184610654 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003292 exon1 c.G130T p.E44X . . . PLA2G4A 5321 broad.mit.edu 36 1 185186474 185186474 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024420 exon13 c.G1327A p.E443K . . . FAM5C 339479 broad.mit.edu 36 1 188334178 188334178 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199051 exon8 c.C1894T p.R632C . . . FAM5C 339479 broad.mit.edu 36 1 188461893 188461893 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199051 exon6 c.G903T p.E301D . . . FAM5C 339479 broad.mit.edu 36 1 188500752 188500752 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_199051 exon4 c.G484T p.G162X . . . RGS21 431704 broad.mit.edu 36 1 190601827 190601827 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039152 exon5 c.G409A p.V137I . . . F13B 2165 broad.mit.edu 36 1 195276454 195276454 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001994 exon11 c.G1773T p.K591N . . . ASPM 259266 broad.mit.edu 36 1 195339467 195339467 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018136 exon18 c.C5537A p.S1846Y . . . ZBTB41 360023 broad.mit.edu 36 1 195435513 195435513 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194314 exon1 c.A714G p.K238K . . . CRB1 23418 broad.mit.edu 36 1 195564261 195564261 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201253 exon2 c.G157T p.D53Y . . . CRB1 23418 broad.mit.edu 36 1 195564400 195564400 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201253 exon2 c.C296A p.P99H . . . CRB1 23418 broad.mit.edu 36 1 195670692 195670692 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201253 exon9 c.T3076G p.L1026V . . . DENND1B 163486 broad.mit.edu 36 1 195853462 195853462 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195215 exon11 c.G723A p.W241X . . . LHX9 56956 broad.mit.edu 36 1 196157109 196157109 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020204 exon3 c.G430T p.E144X . . . PTPRC 5788 broad.mit.edu 36 1 196990064 196990064 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080921 exon29 c.C3064A p.L1022I . . . KIF14 9928 broad.mit.edu 36 1 198839660 198839660 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014875 exon9 c.G1793A p.R598Q . . . CACNA1S 779 broad.mit.edu 36 1 199313799 199313799 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000069 exon11 c.T1450C p.Y484H . . . NAV1 89796 broad.mit.edu 36 1 200018050 200018050 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167738 exon4 c.T614G p.I205S . . . TMEM183A 92703 broad.mit.edu 36 1 201251882 201251882 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079809 exon5 c.G699T p.K233N . . . SRGAP2 23380 broad.mit.edu 36 1 204670195 204670195 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170637 exon11 c.G1292C p.R431P . . . DYRK3 8444 broad.mit.edu 36 1 204887628 204887628 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003582 exon3 c.C462A p.L154L . . . IL10 3586 broad.mit.edu 36 1 205010880 205010880 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000572 exon3 c.C373T p.R125C . . . CR2 1380 broad.mit.edu 36 1 205706640 205706640 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006658 exon2 c.G205T p.D69Y . . . CR2 1380 broad.mit.edu 36 1 205710032 205710032 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006658 exon6 c.A1187G p.Q396R . . . CR1 1378 broad.mit.edu 36 1 205746019 205746019 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000651 exon2 c.C269T p.S90L . . . IRF6 3664 broad.mit.edu 36 1 208030728 208030728 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006147 exon7 c.C795A p.L265L . . . HHAT 55733 broad.mit.edu 36 1 208644488 208644488 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018194 exon6 c.C526T p.R176C . . . KCNH1 3756 broad.mit.edu 36 1 209373854 209373854 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002238 exon1 c.G57T p.E19D . . . INTS7 25896 broad.mit.edu 36 1 210222655 210222655 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199809 exon8 c.C971A p.S324Y . . . FAM71A 149647 broad.mit.edu 36 1 210865271 210865271 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153606 exon1 c.C429T p.F143F . . . RPS6KC1 26750 broad.mit.edu 36 1 211480952 211480952 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012424 exon11 c.T1510G p.S504A . . . CENPF 1063 broad.mit.edu 36 1 212881451 212881451 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016343 exon12 c.G3147T p.K1049N . . . CENPF 1063 broad.mit.edu 36 1 212882531 212882531 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016343 exon12 c.G4227T p.E1409D . . . CENPF 1063 broad.mit.edu 36 1 212891816 212891816 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016343 exon15 c.G8124T p.K2708N . . . USH2A 7399 broad.mit.edu 36 1 214019933 214019933 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon55 c.C10814A p.A3605D . . . USH2A 7399 broad.mit.edu 36 1 214117730 214117730 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon43 c.C8674A p.L2892I . . . USH2A 7399 broad.mit.edu 36 1 214128686 214128686 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon41 c.C7928A p.S2643Y . . . USH2A 7399 broad.mit.edu 36 1 214205295 214205295 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon37 c.C7107A p.F2369L . . . ECE1 1889 broad.mit.edu 36 1 21432688 21432688 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001113348 exon14 c.C1572A p.F524L . . . USH2A 7399 broad.mit.edu 36 1 214438499 214438499 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon18 c.G3862T p.E1288X . . . ECE1 1889 broad.mit.edu 36 1 21444149 21444149 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001113348 exon10 c.C1150T p.R384W . . . USH2A 7399 broad.mit.edu 36 1 214532209 214532209 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon10 c.G1771T p.D591Y . . . USH2A 7399 broad.mit.edu 36 1 214605027 214605027 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon4 c.C675A p.F225L . . . USH2A 7399 broad.mit.edu 36 1 214662111 214662111 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon2 c.G191A p.S64N . . . TGFB2 7042 broad.mit.edu 36 1 216645179 216645179 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003238 exon2 c.G392A p.R131Q . . . TGFB2 7042 broad.mit.edu 36 1 216674092 216674092 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003238 exon3 c.G556A p.D186N . . . RAP1GAP 5909 broad.mit.edu 36 1 21816493 21816493 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002885 exon7 c.G184A p.E62K . . . IARS2 55699 broad.mit.edu 36 1 218378988 218378988 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018060 exon18 c.C2191T p.R731C . . . MARK1 4139 broad.mit.edu 36 1 218893086 218893086 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018650 exon16 c.C1757T p.A586V . . . USP48 84196 broad.mit.edu 36 1 21951722 21951722 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001032730 exon5 c.G550T p.E184X . . . MIA3 375056 broad.mit.edu 36 1 220870237 220870237 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198551 exon4 c.C3052A p.L1018I . . . TLR5 7100 broad.mit.edu 36 1 221351584 221351584 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003268 exon6 c.G1413T p.E471D . . . SUSD4 55061 broad.mit.edu 36 1 221463383 221463383 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017982 exon8 c.G1275A p.G425G . . . CAPN2 824 broad.mit.edu 36 1 222024790 222024790 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001748 exon18 c.G1843A p.D615N . . . NVL 4931 broad.mit.edu 36 1 222566172 222566172 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002533 exon5 c.A295C p.S99R . . . CDC42BPA 8476 broad.mit.edu 36 1 225453964 225453964 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014826 exon4 c.C367T p.R123C . . . SNAP47 116841 broad.mit.edu 36 1 226002066 226002066 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053052 exon2 c.C141T p.S47S . . . WNT9A 7483 broad.mit.edu 36 1 226178542 226178542 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003395 exon3 c.G535A p.V179I . . . OBSCN 84033 broad.mit.edu 36 1 226538050 226538050 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052843 exon33 c.C8961T p.C2987C . . . OBSCN 84033 broad.mit.edu 36 1 226543175 226543175 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052843 exon38 c.T10302G p.C3434W . . . OBSCN 84033 broad.mit.edu 36 1 226625347 226625347 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098623 exon94 c.C20245T p.R6749C . . . ZBTB40 9923 broad.mit.edu 36 1 22700589 22700589 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014870 exon4 c.C849T p.F283F . . . ZBTB40 9923 broad.mit.edu 36 1 22707659 22707659 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014870 exon8 c.C1547A p.S516Y . . . CAPN9 10753 broad.mit.edu 36 1 228971620 228971620 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016452 exon6 c.G777A p.T259T . . . PCNXL2 80003 broad.mit.edu 36 1 231200712 231200712 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014801 exon32 c.C5699T p.P1900L . . . PCNXL2 80003 broad.mit.edu 36 1 231342197 231342197 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014801 exon20 c.G3545T p.R1182I . . . PCNXL2 80003 broad.mit.edu 36 1 231380179 231380179 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014801 exon17 c.G3265T p.D1089Y . . . PCNXL2 80003 broad.mit.edu 36 1 231464490 231464490 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014801 exon3 c.G404A p.R135Q . . . TBCE 6905 broad.mit.edu 36 1 233667264 233667264 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079515 exon12 c.C968T p.S323L . . . LYST 1130 broad.mit.edu 36 1 234036621 234036621 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000081 exon6 c.G2438A p.R813Q . . . LYST 1130 broad.mit.edu 36 1 234038519 234038519 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000081 exon5 c.G2222A p.R741K . . . RYR2 6262 broad.mit.edu 36 1 235599511 235599511 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon6 c.C364T p.R122C RYR2,central_nervous_system,brain,Substitution - Missense,-1 . . RYR2 6262 broad.mit.edu 36 1 235617218 235617218 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon9 c.C591T p.G197G . . . RYR2 6262 broad.mit.edu 36 1 235825490 235825490 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon34 c.T4506C p.N1502N . . . RYR2 6262 broad.mit.edu 36 1 235844240 235844240 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon37 c.C5189T p.T1730M . . . RYR2 6262 broad.mit.edu 36 1 235857951 235857951 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon41 c.C6388T p.L2130L . . . RYR2 6262 broad.mit.edu 36 1 235941707 235941707 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon71 c.G10270T p.E3424X . . . RYR2 6262 broad.mit.edu 36 1 235962041 235962041 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon78 c.C11008A p.L3670M . . . RYR2 6262 broad.mit.edu 36 1 236003538 236003538 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon87 c.A11742G p.K3914K . . . RYR2 6262 broad.mit.edu 36 1 236014070 236014070 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon90 c.C12435T p.I4145I . . . RYR2 6262 broad.mit.edu 36 1 236018022 236018022 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon92 c.C13440A p.F4480L . . . RYR2 6262 broad.mit.edu 36 1 236021365 236021365 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon93 c.G13490A p.R4497H . . . RYR2 6262 broad.mit.edu 36 1 236027993 236027993 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon97 c.G13990T p.D4664Y . . . ZP4 57829 broad.mit.edu 36 1 236119799 236119799 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021186 exon3 c.G391A p.D131N . . . TCEB3 6924 broad.mit.edu 36 1 23955017 23955017 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003198 exon8 c.A1967G p.Y656C . . . OPN3 23596 broad.mit.edu 36 1 239827716 239827716 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014322 exon3 c.G900A p.S300S . . . C1orf128 57095 broad.mit.edu 36 1 23985457 23985457 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020362 exon5 c.C491T p.T164M . . . WDR64 128025 broad.mit.edu 36 1 240020593 240020593 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144625 exon24 c.A2939C p.K980T . . . MAP1LC3C 440738 broad.mit.edu 36 1 240228930 240228930 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001004343 exon1 c.C4T p.P2S . . . PLD5 200150 broad.mit.edu 36 1 240319814 240319814 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195811 exon10 c.G1390T p.D464Y . . . FUCA1 2517 broad.mit.edu 36 1 24064602 24064602 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000147 exon2 c.T490A p.L164M . . . KIF26B 55083 broad.mit.edu 36 1 243916249 243916249 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018012 exon12 c.C3341T p.A1114V . . . AHCTF1 25909 broad.mit.edu 36 1 245107093 245107093 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015446 exon22 c.A2822G p.D941G . . . AHCTF1 25909 broad.mit.edu 36 1 245130388 245130388 + Missense_Mutation SNP G A A rs62187567 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015446 exon9 c.C1151T p.S384L . . . AHCTF1 25909 broad.mit.edu 36 1 245137615 245137615 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015446 exon5 c.C652T p.R218C . . . NLRP3 114548 broad.mit.edu 36 1 245653176 245653176 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004895 exon2 c.C305T p.S102L . . . NLRP3 114548 broad.mit.edu 36 1 245674045 245674045 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004895 exon7 c.G2818A p.D940N . . . OR2W5 441932 broad.mit.edu 36 1 245721723 245721723 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004698 exon1 c.G671A p.R224H . . . OR2T33 391195 broad.mit.edu 36 1 246503507 246503507 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004695 exon1 c.A233G p.K78R . . . OR2T33 391195 broad.mit.edu 36 1 246503706 246503706 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004695 exon1 c.C34A p.L12I . . . OR2T2 401992 broad.mit.edu 36 1 246683167 246683167 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004136 exon1 c.C446T p.S149F . . . TMEM57 55219 broad.mit.edu 36 1 25690641 25690641 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018202 exon10 c.C1771T p.R591W . . . ZNF593 51042 broad.mit.edu 36 1 26369536 26369536 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015871 exon2 c.C241T p.R81X . . . CCDC21 64793 broad.mit.edu 36 1 26470165 26470165 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022778 exon10 c.C1723T p.R575X . . . FGR 2268 broad.mit.edu 36 1 27812116 27812116 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042747 exon13 c.C1486T p.R496C . . . STX12 23673 broad.mit.edu 36 1 28018813 28018813 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177424 exon8 c.C715T p.R239X . . . DNAJC8 22826 broad.mit.edu 36 1 28428083 28428083 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014280 exon2 c.G117A p.S39S . . . PHACTR4 65979 broad.mit.edu 36 1 28672854 28672854 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023923 exon6 c.C1055A p.S352Y . . . GMEB1 10691 broad.mit.edu 36 1 28913688 28913688 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006582 exon10 c.G1538A p.S513N . . . EPB41 2035 broad.mit.edu 36 1 29186676 29186676 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203343 exon2 c.A140C p.N47T . . . PTPRU 10076 broad.mit.edu 36 1 29474708 29474708 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005704 exon8 c.C1306T p.R436X . . . LAPTM5 7805 broad.mit.edu 36 1 30983083 30983083 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006762 exon6 c.G561T p.M187I . . . PUM1 9698 broad.mit.edu 36 1 31190859 31190859 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001020658 exon18 c.G2915A p.G972D . . . PUM1 9698 broad.mit.edu 36 1 31199292 31199292 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001020658 exon15 c.G2447A p.R816H . . . TINAGL1 64129 broad.mit.edu 36 1 31823443 31823443 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022164 exon8 c.G962A p.R321H . . . COL16A1 1307 broad.mit.edu 36 1 31909803 31909803 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001856 exon48 c.C3150T p.I1050I . . . TSSK3 81629 broad.mit.edu 36 1 32601820 32601820 + Silent SNP C T T rs61746387 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052841 exon2 c.C183T p.I61I . . . S100PBP 64766 broad.mit.edu 36 1 33064588 33064588 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017406 exon3 c.T301G p.S101A . . . PHC2 1912 broad.mit.edu 36 1 33567312 33567312 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198040 exon13 c.C2168T p.S723L . . . ZSCAN20 7579 broad.mit.edu 36 1 33717828 33717828 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145238 exon2 c.A352T p.S118C . . . ZSCAN20 7579 broad.mit.edu 36 1 33733205 33733205 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145238 exon8 c.A2674C p.S892R . . . CSMD2 114784 broad.mit.edu 36 1 33860401 33860401 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052896 exon37 c.A5660G p.Y1887C . . . GJA4 2701 broad.mit.edu 36 1 35033006 35033006 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002060 exon2 c.G605A p.R202H . . . ZMYM4 9202 broad.mit.edu 36 1 35656658 35656658 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005095 exon29 c.G4337A p.R1446Q . . . KIAA0319L 79932 broad.mit.edu 36 1 35689834 35689834 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024874 exon13 c.A2044G p.N682D . . . NCDN 23154 broad.mit.edu 36 1 35798957 35798957 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001014841 exon3 c.C567T p.A189A . . . EIF2C3 192669 broad.mit.edu 36 1 36281703 36281703 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177422 exon15 c.C1539T p.F513F . . . C1orf113 79729 broad.mit.edu 36 1 36557949 36557949 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024676 exon11 c.A765G p.P255P . . . MRPS15 64960 broad.mit.edu 36 1 36700339 36700339 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031280 exon3 c.T188C p.L63P . . . GRIK3 2899 broad.mit.edu 36 1 37088566 37088566 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000831 exon9 c.C1259T p.A420V . . . KIAA0562 9731 broad.mit.edu 36 1 3742940 3742940 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014704 exon10 c.C1296A p.I432I . . . EPHA10 284656 broad.mit.edu 36 1 37999667 37999667 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001099439 exon3 c.G847A p.E283K . . . SF3A3 10946 broad.mit.edu 36 1 38215148 38215148 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006802 exon12 c.C1000A p.L334I . . . RRAGC 64121 broad.mit.edu 36 1 39077825 39077825 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022157 exon7 c.G1187A p.R396Q . . . MACF1 23499 broad.mit.edu 36 1 39535895 39535895 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012090 exon22 c.G2387A p.R796Q . . . MACF1 23499 broad.mit.edu 36 1 39574082 39574082 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033044 exon1 c.C4555A p.L1519I . . . TRIT1 54802 broad.mit.edu 36 1 40086354 40086354 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017646 exon6 c.C706A p.L236I . . . RLF 6018 broad.mit.edu 36 1 40433935 40433935 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012421 exon4 c.A519C p.Q173H . . . SMAP2 64744 broad.mit.edu 36 1 40652462 40652462 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198979 exon6 c.G519A p.P173P . . . NFYC 4802 broad.mit.edu 36 1 40991411 40991411 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014223 exon5 c.G293T p.R98I . . . HIVEP3 59269 broad.mit.edu 36 1 41813829 41813829 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024503 exon5 c.C5180T p.P1727L . . . ST3GAL3 6487 broad.mit.edu 36 1 44159167 44159167 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174964 exon11 c.C1063T p.R355C . . . HECTD3 79654 broad.mit.edu 36 1 45242171 45242171 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024602 exon19 c.T2372C p.F791S . . . RAD54L 8438 broad.mit.edu 36 1 46505755 46505755 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142548 exon10 c.A929G p.Q310R . . . DMBX1 127343 broad.mit.edu 36 1 46748771 46748771 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172225 exon2 c.G191A p.R64H . . . CYP4B1 1580 broad.mit.edu 36 1 47056419 47056419 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099772 exon11 c.G1302T p.E434D . . . ELAVL4 1996 broad.mit.edu 36 1 50439282 50439282 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144774 exon7 c.C946T p.R316C . . . NRD1 4898 broad.mit.edu 36 1 52048619 52048619 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002525 exon18 c.C2029A p.L677I . . . ZFYVE9 9372 broad.mit.edu 36 1 52475984 52475984 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007324 exon4 c.A307G p.M103V . . . ORC1 4998 broad.mit.edu 36 1 52640414 52640414 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190818 exon2 c.C70T p.R24X . . . ACOT11 26027 broad.mit.edu 36 1 54869080 54869080 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015547 exon16 c.G1715A p.R572H . . . C1orf168 199920 broad.mit.edu 36 1 56978973 56978973 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004303 exon13 c.C1688T p.S563L . . . C1orf168 199920 broad.mit.edu 36 1 57030988 57030988 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004303 exon2 c.A86C p.K29T . . . OMA1 115209 broad.mit.edu 36 1 58719309 58719309 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145243 exon9 c.G1491T p.K497N . . . NPHP4 261734 broad.mit.edu 36 1 5930806 5930806 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015102 exon8 c.G903A p.P301P . . . FGGY 55277 broad.mit.edu 36 1 59559975 59559975 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018291 exon2 c.G166A p.E56K . . . CHD5 26038 broad.mit.edu 36 1 6103804 6103804 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015557 exon33 c.G4860A p.E1620E . . . CHD5 26038 broad.mit.edu 36 1 6150892 6150892 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015557 exon2 c.G112T p.D38Y . . . INADL 10207 broad.mit.edu 36 1 62009711 62009711 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176877 exon6 c.A545G p.N182S . . . ROR1 4919 broad.mit.edu 36 1 64416239 64416239 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005012 exon9 c.G1927A p.A643T . . . CACHD1 57685 broad.mit.edu 36 1 64904363 64904363 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020925 exon16 c.C2159A p.S720Y . . . JAK1 3716 broad.mit.edu 36 1 65105302 65105302 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002227 exon7 c.A825C p.E275D . . . TAS1R1 80835 broad.mit.edu 36 1 6561983 6561983 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177540 exon5 c.A1516G p.K506E . . . LEPR 3953 broad.mit.edu 36 1 65874549 65874549 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002303 exon20 c.G2761T p.D921Y . . . TCTEX1D1 200132 broad.mit.edu 36 1 66993020 66993020 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152665 exon2 c.C91T p.R31X . . . WDR78 79819 broad.mit.edu 36 1 67078826 67078826 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207014 exon9 c.G1408A p.A470T . . . RPE65 6121 broad.mit.edu 36 1 68677280 68677280 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000329 exon9 c.C931T p.L311F . . . LRRC7 57554 broad.mit.edu 36 1 70277311 70277311 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020794 exon19 c.C3102A p.F1034L . . . LRRC7 57554 broad.mit.edu 36 1 70277775 70277775 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020794 exon19 c.T3566G p.F1189C . . . LRRC7 57554 broad.mit.edu 36 1 70277949 70277949 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020794 exon19 c.A3740G p.N1247S . . . LRRC40 55631 broad.mit.edu 36 1 70397653 70397653 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017768 exon10 c.G1168T p.E390X . . . PTGER3 5733 broad.mit.edu 36 1 71250704 71250704 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198715 exon2 c.A949G p.T317A . . . C1orf173 127254 broad.mit.edu 36 1 74810760 74810760 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002912 exon14 c.C3222T p.D1074D . . . C1orf173 127254 broad.mit.edu 36 1 74811353 74811353 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002912 exon14 c.G2629A p.E877K . . . C1orf173 127254 broad.mit.edu 36 1 74838092 74838092 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002912 exon11 c.A1601C p.K534T . . . IFI44 10561 broad.mit.edu 36 1 78893355 78893355 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006417 exon4 c.G563A p.R188Q . . . ELTD1 64123 broad.mit.edu 36 1 79155910 79155910 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022159 exon12 c.T1746C p.I582I . . . ELTD1 64123 broad.mit.edu 36 1 79156240 79156240 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022159 exon11 c.C1545A p.L515L . . . LPHN2 23266 broad.mit.edu 36 1 82220096 82220096 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012302 exon17 c.G3079A p.A1027T . . . RERE 473 broad.mit.edu 36 1 8348460 8348460 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012102 exon14 c.C1446A p.F482L . . . TTLL7 79739 broad.mit.edu 36 1 84149532 84149532 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024686 exon15 c.G1690A p.E564K . . . ZNHIT6 54680 broad.mit.edu 36 1 85896214 85896214 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170670 exon10 c.C1159A p.L387I . . . ZNHIT6 54680 broad.mit.edu 36 1 85944577 85944577 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170670 exon4 c.C655T p.R219X . . . COL24A1 255631 broad.mit.edu 36 1 86363879 86363879 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152890 exon3 c.G728A p.R243H . . . ODF2L 57489 broad.mit.edu 36 1 86625262 86625262 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020729 exon2 c.G37T p.E13X . . . CLCA2 9635 broad.mit.edu 36 1 86677237 86677237 + Missense_Mutation SNP G A A rs55906076 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006536 exon7 c.G1063A p.D355N . . . CLCA4 22802 broad.mit.edu 36 1 86816256 86816256 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012128 exon12 c.C2035T p.R679W . . . GBP1 2633 broad.mit.edu 36 1 89293085 89293085 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002053 exon10 c.A1533C p.R511S . . . GBP1 2633 broad.mit.edu 36 1 89301437 89301437 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002053 exon2 c.G69A p.A23A . . . ZNF644 84146 broad.mit.edu 36 1 91176428 91176428 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201269 exon3 c.G3071A p.R1024Q . . . HFM1 164045 broad.mit.edu 36 1 91588991 91588991 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017975 exon18 c.T2098G p.L700V . . . HFM1 164045 broad.mit.edu 36 1 91623800 91623800 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017975 exon5 c.C674T p.A225V . . . CDC7 8317 broad.mit.edu 36 1 91762388 91762388 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003503 exon12 c.T1533G p.N511K . . . TGFBR3 7049 broad.mit.edu 36 1 91933868 91933868 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195683 exon16 c.G2383C p.V795L . . . H6PD 9563 broad.mit.edu 36 1 9246690 9246690 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004285 exon5 c.C1551T p.S517S . . . EVI5 7813 broad.mit.edu 36 1 92752051 92752051 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005665 exon18 c.T2183C p.V728A . . . CCDC18 343099 broad.mit.edu 36 1 93422237 93422237 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206886 exon3 c.C603T p.N201N . . . CCDC18 343099 broad.mit.edu 36 1 93452902 93452902 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206886 exon12 c.G1864T p.D622Y . . . ABCA4 24 broad.mit.edu 36 1 94300735 94300735 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000350 exon13 c.C1923A p.C641X . . . ARHGAP29 9411 broad.mit.edu 36 1 94412520 94412520 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004815 exon23 c.G3279A p.K1093K . . . LPPR4 9890 broad.mit.edu 36 1 99526151 99526151 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014839 exon2 c.G265A p.E89K . . . C20orf46 55321 broad.mit.edu 36 20 1112423 1112423 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018354 exon1 c.A23C p.E8A . . . SPTLC3 55304 broad.mit.edu 36 20 12977742 12977742 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018327 exon2 c.A267C p.E89D . . . ISM1 140862 broad.mit.edu 36 20 13227726 13227726 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080826 exon6 c.G1015A p.D339N . . . TASP1 55617 broad.mit.edu 36 20 13553845 13553845 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017714 exon3 c.G200A p.R67Q . . . NSFL1C 55968 broad.mit.edu 36 20 1374360 1374360 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016143 exon8 c.C901T p.R301W . . . SEL1L2 80343 broad.mit.edu 36 20 13798835 13798835 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025229 exon13 c.C1119T p.G373G . . . SEL1L2 80343 broad.mit.edu 36 20 13814964 13814964 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025229 exon9 c.T870G p.F290L . . . MACROD2 140733 broad.mit.edu 36 20 15814410 15814410 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033087 exon6 c.C24T p.D8D . . . KIF16B 55614 broad.mit.edu 36 20 16241037 16241037 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024704 exon25 c.G3738T p.K1246N . . . KIF16B 55614 broad.mit.edu 36 20 16308036 16308036 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024704 exon19 c.G2611T p.E871X . . . KIF16B 55614 broad.mit.edu 36 20 16308560 16308560 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024704 exon19 c.G2087T p.R696I . . . PDYN 5173 broad.mit.edu 36 20 1909534 1909534 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190892 exon3 c.C200A p.S67Y . . . SLC24A3 57419 broad.mit.edu 36 20 19582741 19582741 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020689 exon7 c.T648G p.D216E . . . CRNKL1 51340 broad.mit.edu 36 20 19968343 19968343 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016652 exon12 c.C1938T p.F646F . . . C20orf26 26074 broad.mit.edu 36 20 20003878 20003878 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015585 exon5 c.C417T p.I139I . . . STK35 140901 broad.mit.edu 36 20 2045855 2045855 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080836 exon3 c.C1436T p.A479V . . . RALGAPA2 57186 broad.mit.edu 36 20 20517981 20517981 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020343 exon18 c.G2370A p.S790S . . . XRN2 22803 broad.mit.edu 36 20 21260420 21260420 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012255 exon8 c.G664T p.D222Y . . . CD93 22918 broad.mit.edu 36 20 23012959 23012959 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012072 exon1 c.C1871T p.A624V . . . CST4 1472 broad.mit.edu 36 20 23617430 23617430 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001899 exon1 c.C177T p.T59T . . . C20orf3 57136 broad.mit.edu 36 20 24898205 24898205 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020531 exon7 c.G805T p.D269Y . . . NOP56 10528 broad.mit.edu 36 20 2583158 2583158 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006392 exon4 c.G307A p.A103T . . . CPXM1 56265 broad.mit.edu 36 20 2727513 2727513 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184699 exon2 c.C199T p.R67X . . . VPS16 64601 broad.mit.edu 36 20 2793274 2793274 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080413 exon15 c.A1468T p.I490F . . . MYLK2 85366 broad.mit.edu 36 20 29871050 29871050 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033118 exon2 c.G6A p.A2A . . . FOXS1 2307 broad.mit.edu 36 20 29896033 29896033 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004118 exon1 c.G974A p.G325E . . . TTLL9 164395 broad.mit.edu 36 20 29974445 29974445 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008409 exon8 c.G592A p.D198N . . . KIF3B 9371 broad.mit.edu 36 20 30361612 30361612 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004798 exon2 c.A371G p.D124G . . . ProSAPiP1 9762 broad.mit.edu 36 20 3094987 3094987 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014731 exon2 c.G479A p.R160Q . . . BPIL3 128859 broad.mit.edu 36 20 31084462 31084462 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174897 exon2 c.G109A p.A37T . . . C20orf186 149954 broad.mit.edu 36 20 31142218 31142218 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182519 exon8 c.C1095A p.F365L . . . SLC4A11 83959 broad.mit.edu 36 20 3158288 3158288 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174090 exon14 c.G1753A p.A585T . . . CBFA2T2 9139 broad.mit.edu 36 20 31676463 31676463 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001032999 exon6 c.C925T p.R309C . . . RALY 22913 broad.mit.edu 36 20 32123645 32123645 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016732 exon3 c.A104C p.K35T . . . C20orf194 25943 broad.mit.edu 36 20 3233157 3233157 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009984 exon21 c.T1712G p.F571C . . . C20orf194 25943 broad.mit.edu 36 20 3246942 3246942 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009984 exon17 c.G1462T p.E488X . . . NCOA6 23054 broad.mit.edu 36 20 32793279 32793279 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014071 exon11 c.C4442A p.S1481Y . . . C20orf194 25943 broad.mit.edu 36 20 3303716 3303716 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009984 exon5 c.C466T p.R156X . . . CEP250 11190 broad.mit.edu 36 20 33555569 33555569 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007186 exon30 c.G5958A p.E1986E . . . RBM39 9584 broad.mit.edu 36 20 33776420 33776420 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004902 exon7 c.G488T p.R163I . . . PHF20 51230 broad.mit.edu 36 20 33914702 33914702 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016436 exon6 c.A774C p.R258S . . . DSN1 79980 broad.mit.edu 36 20 34832895 34832895 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145318 exon2 c.G102T p.E34D . . . C20orf132 140699 broad.mit.edu 36 20 35177020 35177020 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152503 exon18 c.G2506T p.D836Y . . . ATRN 8455 broad.mit.edu 36 20 3572865 3572865 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139321 exon28 c.T4115G p.F1372C . . . TGM2 7052 broad.mit.edu 36 20 36192133 36192133 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004613 exon13 c.C1966T p.P656S . . . TGM2 7052 broad.mit.edu 36 20 36201423 36201423 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198951 exon9 c.G1147A p.D383N . . . RALGAPB 57148 broad.mit.edu 36 20 36594838 36594838 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020336 exon15 c.A2167C p.S723R . . . SLC32A1 140679 broad.mit.edu 36 20 36789691 36789691 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080552 exon2 c.C573T p.N191N . . . LPIN3 64900 broad.mit.edu 36 20 39407860 39407860 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022896 exon2 c.G3T p.M1I . . . PTPRT 11122 broad.mit.edu 36 20 40142966 40142966 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_133170 exon32 c.C4350T p.Y1450Y . . . L3MBTL1 26013 broad.mit.edu 36 20 41590738 41590738 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032107 exon8 c.C824T p.S275L . . . MYBL2 4605 broad.mit.edu 36 20 41777312 41777312 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002466 exon13 c.G1949A p.R650Q . . . TOX2 84969 broad.mit.edu 36 20 42116520 42116520 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032883 exon6 c.C693T p.F231F . . . C20orf111 51526 broad.mit.edu 36 20 42265061 42265061 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016470 exon3 c.G145T p.D49Y . . . PABPC1L 80336 broad.mit.edu 36 20 42972364 42972364 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001124756 exon1 c.T166C p.Y56H . . . WFDC8 90199 broad.mit.edu 36 20 43620993 43620993 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130896 exon3 c.G189A p.P63P . . . UBE2C 11065 broad.mit.edu 36 20 43877744 43877744 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181801 exon4 c.T257C p.L86P . . . ZSWIM1 90204 broad.mit.edu 36 20 43944655 43944655 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080603 exon2 c.A17C p.K6T . . . NCOA5 57727 broad.mit.edu 36 20 44132323 44132323 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020967 exon3 c.C298T p.R100X . . . ZNF334 55713 broad.mit.edu 36 20 44563526 44563526 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018102 exon5 c.G1859T p.R620I . . . EYA2 2139 broad.mit.edu 36 20 45205113 45205113 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172110 exon10 c.G897A p.T299T . . . ZMYND8 23613 broad.mit.edu 36 20 45308663 45308663 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012408 exon14 c.A1780C p.N594H . . . ARFGEF2 10564 broad.mit.edu 36 20 47075329 47075329 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006420 exon36 c.C4828T p.H1610Y . . . DDX27 55661 broad.mit.edu 36 20 47276409 47276409 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017895 exon7 c.G729A p.P243P . . . ZNFX1 57169 broad.mit.edu 36 20 47320530 47320530 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021035 exon3 c.G1226A p.R409Q . . . KCNB1 3745 broad.mit.edu 36 20 47424481 47424481 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004975 exon2 c.C1023T p.G341G . . . ATP9A 10079 broad.mit.edu 36 20 49720038 49720038 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006045 exon13 c.G1198A p.E400K . . . TSHZ2 128553 broad.mit.edu 36 20 51304723 51304723 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173485 exon2 c.C1319A p.S440Y . . . TSHZ2 128553 broad.mit.edu 36 20 51304960 51304960 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173485 exon2 c.C1556A p.S519Y . . . BCAS1 8537 broad.mit.edu 36 20 52108643 52108643 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003657 exon2 c.C22A p.P8T . . . CYP24A1 1591 broad.mit.edu 36 20 52212795 52212795 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000782 exon7 c.C858T p.I286I . . . BMP7 655 broad.mit.edu 36 20 55236786 55236786 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001719 exon2 c.G517A p.E173K . . . BMP7 655 broad.mit.edu 36 20 55274195 55274195 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001719 exon1 c.G391A p.D131N . . . SPO11 23626 broad.mit.edu 36 20 55343242 55343242 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012444 exon6 c.C540T p.G180G . . . CTCFL 140690 broad.mit.edu 36 20 55523117 55523117 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080618 exon7 c.G1267A p.E423K . . . PHACTR3 116154 broad.mit.edu 36 20 57782804 57782804 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080672 exon7 c.C1038T p.D346D . . . PHACTR3 116154 broad.mit.edu 36 20 57849927 57849927 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080672 exon11 c.C1529T p.A510V . . . SYCP2 10388 broad.mit.edu 36 20 57903989 57903989 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014258 exon19 c.G1563T p.E521D . . . SYCP2 10388 broad.mit.edu 36 20 57909227 57909227 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014258 exon16 c.G1224A p.S408S . . . CDH26 60437 broad.mit.edu 36 20 58005102 58005102 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177980 exon13 c.G1910A p.R637Q . . . TAF4 6874 broad.mit.edu 36 20 60009009 60009009 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003185 exon10 c.G2650T p.E884X . . . FERMT1 55612 broad.mit.edu 36 20 6017618 6017618 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017671 exon10 c.C1258A p.L420I . . . EEF1A2 1917 broad.mit.edu 36 20 61597688 61597688 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001958 exon3 c.G289A p.D97N . . . ZNF512B 57473 broad.mit.edu 36 20 62068214 62068214 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020713 exon5 c.C758T p.P253L . . . OPRL1 4987 broad.mit.edu 36 20 62194721 62194721 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182647 exon3 c.G204T p.G68G . . . MYT1 4661 broad.mit.edu 36 20 62323840 62323840 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004535 exon14 c.C2392T p.L798F . . . HAO1 54363 broad.mit.edu 36 20 7842842 7842842 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017545 exon3 c.C514T p.R172C . . . PLCB1 23236 broad.mit.edu 36 20 8578046 8578046 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182734 exon7 c.C544T p.R182W . . . RSPO4 343637 broad.mit.edu 36 20 896663 896663 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029871 exon2 c.C198T p.Y66Y . . . PLCB4 5332 broad.mit.edu 36 20 9339729 9339729 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000933 exon21 c.C2009T p.S670L . . . LIPI 149998 broad.mit.edu 36 21 14483265 14483265 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198996 exon2 c.A456C p.K152N . . . LIPI 149998 broad.mit.edu 36 21 14483568 14483568 + De_novo_Start_OutOfFrame SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198996 exon2 c.G153T p.K51N . . . USP25 29761 broad.mit.edu 36 21 16118312 16118312 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013396 exon11 c.A1164C p.K388N . . . CHODL 140578 broad.mit.edu 36 21 18554451 18554451 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024944 exon4 c.A611C p.Q204P . . . NCAM2 4685 broad.mit.edu 36 21 21803225 21803225 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004540 exon16 c.G2260A p.E754K . . . MRPL39 54148 broad.mit.edu 36 21 25894023 25894023 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017446 exon5 c.G547A p.V183I . . . ADAMTS5 11096 broad.mit.edu 36 21 27228875 27228875 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007038 exon4 c.C1470A p.T490T . . . RWDD2B 10069 broad.mit.edu 36 21 29300808 29300808 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016940 exon5 c.G761A p.R254H . . . BACH1 571 broad.mit.edu 36 21 29620810 29620810 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206866 exon3 c.G794A p.G265E . . . GRIK1 2897 broad.mit.edu 36 21 29849394 29849394 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175611 exon15 c.C2412T p.C804C . . . KRTAP13-1 140258 broad.mit.edu 36 21 30690586 30690586 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181599 exon1 c.C311T p.S104F . . . KRTAP19-7 337974 broad.mit.edu 36 21 30855426 30855426 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181614 exon1 c.C54T p.F18F . . . TIAM1 7074 broad.mit.edu 36 21 31476759 31476759 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003253 exon16 c.G2737T p.D913Y . . . SFRS15 57466 broad.mit.edu 36 21 31966016 31966016 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145444 exon19 c.C2966A p.S989Y . . . C21orf63 59271 broad.mit.edu 36 21 32809151 32809151 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058187 exon8 c.A1106G p.E369G . . . SYNJ1 8867 broad.mit.edu 36 21 32939185 32939185 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003895 exon26 c.G3511A p.A1171T . . . SYNJ1 8867 broad.mit.edu 36 21 32960149 32960149 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003895 exon17 c.T2237G p.I746R . . . C21orf62 56245 broad.mit.edu 36 21 33088227 33088227 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162495 exon4 c.C376T p.R126C . . . DONSON 29980 broad.mit.edu 36 21 33878801 33878801 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017613 exon4 c.T750C p.N250N . . . CLIC6 54102 broad.mit.edu 36 21 35001508 35001508 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053277 exon2 c.C1435A p.L479I . . . CHAF1B 8208 broad.mit.edu 36 21 36703549 36703549 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005441 exon10 c.G835A p.A279T . . . HLCS 3141 broad.mit.edu 36 21 37224516 37224516 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000411 exon6 c.G1084A p.E362K . . . KCNJ15 3772 broad.mit.edu 36 21 38593687 38593687 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_170736 exon3 c.C634T p.L212F . . . BRWD1 54014 broad.mit.edu 36 21 39493360 39493360 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033656 exon40 c.C4852A p.L1618I . . . BRWD1 54014 broad.mit.edu 36 21 39589545 39589545 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033656 exon7 c.C603A p.I201I . . . LCA5L 150082 broad.mit.edu 36 21 39700343 39700343 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152505 exon10 c.G1348T p.D450Y . . . LCA5L 150082 broad.mit.edu 36 21 39716834 39716834 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152505 exon5 c.G775T p.E259X . . . DSCAM 1826 broad.mit.edu 36 21 40480937 40480937 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001389 exon14 c.A2770C p.N924H . . . ZNF295 49854 broad.mit.edu 36 21 42284855 42284855 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098403 exon4 c.G1816A p.E606K . . . TRAPPC10 7109 broad.mit.edu 36 21 44276440 44276440 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003274 exon2 c.G108A p.T36T . . . PCNT 5116 broad.mit.edu 36 21 46597632 46597632 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006031 exon10 c.C1643T p.A548V . . . TPTE 7179 broad.mit.edu 36 21 9973296 9973296 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199259 exon9 c.T233C p.L78P . . . CCT8L2 150160 broad.mit.edu 36 22 15451874 15451874 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014406 exon1 c.G1567A p.A523T . . . DGCR14 8220 broad.mit.edu 36 22 17504937 17504937 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022719 exon8 c.G934A p.E312K . . . CLTCL1 8218 broad.mit.edu 36 22 17555222 17555222 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007098 exon29 c.G4453A p.D1485N . . . CLTCL1 8218 broad.mit.edu 36 22 17587480 17587480 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001835 exon18 c.C2833T p.R945C . . . ZNF74 7625 broad.mit.edu 36 22 19084976 19084976 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003426 exon3 c.C175A p.Q59K . . . PI4KA 5297 broad.mit.edu 36 22 19403103 19403103 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002650 exon12 c.C1380T p.I460I . . . PI4KA 5297 broad.mit.edu 36 22 19483532 19483532 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058004 exon16 c.G1679A p.R560Q . . . AIFM3 150209 broad.mit.edu 36 22 19660733 19660733 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001146288 exon11 c.G954T p.E318D . . . TOP3B 8940 broad.mit.edu 36 22 20646802 20646802 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003935 exon13 c.C1524T p.I508I . . . ZNF280A 129025 broad.mit.edu 36 22 21198880 21198880 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080740 exon2 c.G1075A p.A359T . . . C22orf43 51233 broad.mit.edu 36 22 22286329 22286329 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016449 exon9 c.A614C p.D205A . . . CABIN1 23523 broad.mit.edu 36 22 22813552 22813552 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199281 exon23 c.C3411T p.S1137S . . . ADORA2A 135 broad.mit.edu 36 22 23166613 23166613 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000675 exon3 c.C395T p.S132L . . . UPB1 51733 broad.mit.edu 36 22 23226223 23226223 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016327 exon2 c.G253A p.A85T . . . PIWIL3 440822 broad.mit.edu 36 22 23453944 23453944 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008496 exon16 c.T2009G p.V670G . . . PIWIL3 440822 broad.mit.edu 36 22 23475393 23475393 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008496 exon11 c.G1312T p.E438X . . . PIWIL3 440822 broad.mit.edu 36 22 23488424 23488424 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008496 exon2 c.C43T p.R15C . . . SGSM1 129049 broad.mit.edu 36 22 23645953 23645953 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098497 exon24 c.C3186A p.F1062L . . . MYO18B 84700 broad.mit.edu 36 22 24494278 24494278 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032608 exon4 c.G395A p.G132D . . . MYO18B 84700 broad.mit.edu 36 22 24573488 24573488 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032608 exon20 c.A3644T p.E1215V . . . MYO18B 84700 broad.mit.edu 36 22 24752611 24752611 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032608 exon43 c.C6671A p.A2224D . . . SEZ6L 23544 broad.mit.edu 36 22 25018897 25018897 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184776 exon2 c.C620T p.S207L . . . TFIP11 24144 broad.mit.edu 36 22 25222044 25222044 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012143 exon12 c.A1844G p.K615R . . . EMID1 129080 broad.mit.edu 36 22 27959457 27959457 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133455 exon9 c.G913A p.G305S . . . LIMK2 3985 broad.mit.edu 36 22 29993853 29993853 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005569 exon10 c.A1220G p.Y407C . . . SFI1 9814 broad.mit.edu 36 22 30254836 30254836 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014775 exon3 c.G253T p.E85X . . . C22orf24 25775 broad.mit.edu 36 22 30663978 30663978 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015372 exon2 c.G75T p.K25N . . . RFPL2 10739 broad.mit.edu 36 22 30916804 30916804 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159545 exon4 c.C822T p.N274N . . . LARGE 9215 broad.mit.edu 36 22 32009274 32009274 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133642 exon13 c.C1791T p.F597F . . . RBFOX2 23543 broad.mit.edu 36 22 34494283 34494283 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001082579 exon6 c.A720G p.L240L . . . APOL3 80833 broad.mit.edu 36 22 34867465 34867465 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145641 exon5 c.G338A p.R113Q . . . MYH9 4627 broad.mit.edu 36 22 35010493 35010493 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002473 exon39 c.G5494A p.A1832T . . . MYH9 4627 broad.mit.edu 36 22 35025029 35025029 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002473 exon24 c.G2982T p.K994N . . . EIF3D 8664 broad.mit.edu 36 22 35249264 35249264 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003753 exon6 c.C403T p.R135X . . . GTPBP1 9567 broad.mit.edu 36 22 37442852 37442852 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004286 exon4 c.G735A p.T245T . . . NPTXR 23467 broad.mit.edu 36 22 37548644 37548644 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014293 exon5 c.T1419C p.L473L . . . APOBEC3C 27350 broad.mit.edu 36 22 37744300 37744300 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014508 exon4 c.C535T p.R179X . . . APOBEC3F 200316 broad.mit.edu 36 22 37769029 37769029 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145298 exon2 c.C159A p.I53I . . . MCHR1 2847 broad.mit.edu 36 22 39407700 39407700 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005297 exon2 c.C1091T p.A364V . . . ACO2 50 broad.mit.edu 36 22 40237840 40237840 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098 exon4 c.A447C p.E149D . . . PMM1 5372 broad.mit.edu 36 22 40304808 40304808 + Silent SNP G A A rs999980 byHapMap TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002676 exon6 c.C498T p.F166F . . . TCF20 6942 broad.mit.edu 36 22 40894642 40894642 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005650 exon4 c.G5844A p.A1948A . . . TCF20 6942 broad.mit.edu 36 22 40937700 40937700 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005650 exon1 c.G3556T p.E1186X . . . A4GALT 53947 broad.mit.edu 36 22 41418930 41418930 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017436 exon3 c.G972A p.T324T . . . MPPED1 758 broad.mit.edu 36 22 42161048 42161048 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001044370 exon3 c.G375A p.P125P . . . PNPLA3 80339 broad.mit.edu 36 22 42654366 42654366 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025225 exon2 c.G406T p.D136Y . . . PNPLA3 80339 broad.mit.edu 36 22 42667262 42667262 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025225 exon7 c.C1036T p.L346L . . . KIAA1644 85352 broad.mit.edu 36 22 43012876 43012876 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099294 exon4 c.G364A p.A122T . . . PKDREJ 10343 broad.mit.edu 36 22 45033551 45033551 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006071 exon1 c.A4333C p.T1445P . . . PKDREJ 10343 broad.mit.edu 36 22 45035419 45035419 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006071 exon1 c.C2465A p.S822Y . . . BRD1 23774 broad.mit.edu 36 22 48554025 48554025 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014577 exon12 c.G3037A p.E1013K . . . MLC1 23209 broad.mit.edu 36 22 48842167 48842167 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015166 exon12 c.G1106A p.R369K . . . MOV10L1 54456 broad.mit.edu 36 22 48889325 48889325 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164104 exon5 c.T668C p.V223A . . . MOV10L1 54456 broad.mit.edu 36 22 48941379 48941379 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164105 exon25 c.C3400T p.R1134X . . . CPT1B 1375 broad.mit.edu 36 22 49358975 49358975 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152246 exon10 c.G1006A p.A336T . . . COL3A1 1281 broad.mit.edu 36 2 189577000 189577001 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000090 exon39 c.2709_2710insC p.G903fs . . . MYO7B 4648 broad.mit.edu 36 2 128111347 128111348 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . LONRF2 164832 broad.mit.edu 36 2 100267202 100267202 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198461 exon12 c.G2255T p.R752I . . . CHST10 9486 broad.mit.edu 36 2 100376633 100376633 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004854 exon7 c.G577A p.E193K . . . TBC1D8 11138 broad.mit.edu 36 2 100990993 100990993 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102426 exon20 c.C3145T p.R1049W . . . IL1R1 3554 broad.mit.edu 36 2 102147841 102147841 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000877 exon3 c.G237T p.E79D . . . IL1RL2 8808 broad.mit.edu 36 2 102172082 102172082 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003854 exon3 c.A173C p.K58T . . . IL1RL1 9173 broad.mit.edu 36 2 102334723 102334723 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016232 exon11 c.C1581T p.F527F . . . IL18RAP 8807 broad.mit.edu 36 2 102434815 102434815 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003853 exon12 c.C1542A p.F514L . . . TGFBRAP1 9392 broad.mit.edu 36 2 105263321 105263321 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004257 exon6 c.G1413T p.E471D . . . GCC2 9648 broad.mit.edu 36 2 108453978 108453978 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181453 exon6 c.A1761G p.G587G . . . GCC2 9648 broad.mit.edu 36 2 108458500 108458500 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181453 exon8 c.G2938T p.E980X . . . RANBP2 5903 broad.mit.edu 36 2 108747400 108747400 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006267 exon20 c.G3973T p.E1325X . . . SH3RF3 344558 broad.mit.edu 36 2 109415428 109415428 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099289 exon6 c.C1443T p.D481D . . . SH3RF3 344558 broad.mit.edu 36 2 109616368 109616368 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099289 exon9 c.C2157T p.R719R . . . SEPT10 151011 broad.mit.edu 36 2 109661043 109661043 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178584 exon9 c.G1153T p.E385X . . . NPHP1 4867 broad.mit.edu 36 2 110319766 110319766 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128178 exon1 c.G69T p.Q23H . . . ACOXL 55289 broad.mit.edu 36 2 111268213 111268213 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142807 exon5 c.C336A p.L112L . . . ANAPC1 64682 broad.mit.edu 36 2 112308914 112308914 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022662 exon19 c.G2122A p.E708K . . . ANAPC1 64682 broad.mit.edu 36 2 112332426 112332426 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022662 exon11 c.A1286C p.K429T . . . ZC3H6 376940 broad.mit.edu 36 2 112796938 112796938 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198581 exon9 c.A1328C p.K443T . . . IL1F7 27178 broad.mit.edu 36 2 113391190 113391190 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173205 exon2 c.G81T p.K27N . . . IL1F6 27179 broad.mit.edu 36 2 113481970 113481970 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014440 exon4 c.G355A p.E119K . . . SNTG2 54221 broad.mit.edu 36 2 1158827 1158827 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018968 exon8 c.C549A p.L183L . . . GREB1 9687 broad.mit.edu 36 2 11660004 11660004 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014668 exon17 c.A2551C p.N851H . . . DDX18 8886 broad.mit.edu 36 2 118295225 118295225 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006773 exon4 c.C533T p.S178L . . . PTPN4 5775 broad.mit.edu 36 2 120431110 120431110 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002830 exon22 c.C2120T p.A707V . . . GLI2 2736 broad.mit.edu 36 2 121456764 121456764 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005270 exon10 c.C1521T p.F507F . . . CLASP1 23332 broad.mit.edu 36 2 121884916 121884916 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142274 exon23 c.C2312T p.A771V . . . CNTNAP5 129684 broad.mit.edu 36 2 124948844 124948844 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130773 exon7 c.T977A p.F326Y . . . CNTNAP5 129684 broad.mit.edu 36 2 125238095 125238095 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130773 exon16 c.T2431G p.F811V . . . CNTNAP5 129684 broad.mit.edu 36 2 125264067 125264067 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130773 exon18 c.C2868T p.C956C . . . SAP130 79595 broad.mit.edu 36 2 128463692 128463692 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145928 exon13 c.C1774A p.H592N . . . ARHGEF4 50649 broad.mit.edu 36 2 131517612 131517612 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015320 exon11 c.A1585G p.I529V . . . PLEKHB2 55041 broad.mit.edu 36 2 131599927 131599927 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017958 exon3 c.C169T p.R57C . . . NCKAP5 344148 broad.mit.edu 36 2 133257004 133257004 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207363 exon14 c.G3850T p.D1284Y . . . NCKAP5 344148 broad.mit.edu 36 2 133258186 133258186 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207363 exon14 c.A2668G p.S890G . . . NCKAP5 344148 broad.mit.edu 36 2 133352904 133352904 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207481 exon9 c.G635A p.R212Q . . . YSK4 80122 broad.mit.edu 36 2 135460483 135460483 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025052 exon7 c.T2429C p.V810A . . . YSK4 80122 broad.mit.edu 36 2 135461680 135461680 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025052 exon7 c.G1232T p.R411I . . . ZRANB3 84083 broad.mit.edu 36 2 135681644 135681644 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032143 exon19 c.C2839T p.R947X . . . LCT 3938 broad.mit.edu 36 2 136286512 136286512 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002299 exon7 c.G2192A p.G731E . . . LCT 3938 broad.mit.edu 36 2 136291388 136291388 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002299 exon6 c.C1700A p.S567Y . . . LRP1B 53353 broad.mit.edu 36 2 140707254 140707254 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018557 exon91 c.G13771T p.E4591X . . . LRP1B 53353 broad.mit.edu 36 2 141536226 141536226 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018557 exon8 c.C1100A p.S367X . . . GTDC1 79712 broad.mit.edu 36 2 144481458 144481458 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164629 exon7 c.G636T p.E212D . . . MBD5 55777 broad.mit.edu 36 2 148957404 148957404 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018328 exon10 c.C2774A p.S925Y . . . KIF5C 3800 broad.mit.edu 36 2 149526755 149526755 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004522 exon10 c.C921A p.V307V . . . KIF5C 3800 broad.mit.edu 36 2 149565216 149565216 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004522 exon19 c.G2172A p.K724K . . . NEB 4703 broad.mit.edu 36 2 152056520 152056520 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon179 c.G25073A p.R8358H . . . NEB 4703 broad.mit.edu 36 2 152174799 152174799 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon81 c.T12100C p.C4034R . . . NEB 4703 broad.mit.edu 36 2 152220041 152220041 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001164507 exon51 c.C6796T p.L2266L . . . NEB 4703 broad.mit.edu 36 2 152231110 152231110 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon41 c.C4771A p.L1591I . . . NEB 4703 broad.mit.edu 36 2 152256653 152256653 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon23 c.G2182T p.A728S . . . NEB 4703 broad.mit.edu 36 2 152256911 152256911 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon22 c.T2014G p.L672V . . . GPD2 2820 broad.mit.edu 36 2 157075583 157075583 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083112 exon4 c.G304T p.D102Y . . . GALNT5 11227 broad.mit.edu 36 2 157823517 157823517 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014568 exon1 c.G677A p.R226K . . . GALNT5 11227 broad.mit.edu 36 2 157850832 157850832 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014568 exon3 c.C1681T p.R561C . . . ERMN 57471 broad.mit.edu 36 2 157886331 157886331 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020711 exon3 c.G553T p.E185X . . . CYTIP 9595 broad.mit.edu 36 2 157992129 157992129 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004288 exon6 c.G526A p.A176T . . . PKP4 8502 broad.mit.edu 36 2 159228061 159228061 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003628 exon15 c.C2435T p.S812L . . . LY75 4065 broad.mit.edu 36 2 160414880 160414880 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198760 exon23 c.C3007T p.L1003F . . . LY75 4065 broad.mit.edu 36 2 160423173 160423173 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198760 exon16 c.T2329C p.L777L . . . TANK 10010 broad.mit.edu 36 2 161800136 161800136 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199135 exon8 c.C1139T p.S380L . . . DPP4 1803 broad.mit.edu 36 2 162581870 162581870 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001935 exon17 c.G1462T p.D488Y . . . DPP4 1803 broad.mit.edu 36 2 162583510 162583510 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001935 exon16 c.G1395A p.A465A . . . IFIH1 64135 broad.mit.edu 36 2 162852909 162852909 + Silent SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022168 exon5 c.T1077G p.V359V . . . COBLL1 22837 broad.mit.edu 36 2 165259590 165259590 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014900 exon12 c.T2672G p.F891C . . . SCN3A 6328 broad.mit.edu 36 2 165655219 165655219 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006922 exon28 c.G5690A p.R1897H . . . SCN3A 6328 broad.mit.edu 36 2 165692480 165692480 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006922 exon18 c.C3300T p.T1100T . . . SCN3A 6328 broad.mit.edu 36 2 165719240 165719240 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006922 exon11 c.G1348A p.E450K . . . SCN2A 6326 broad.mit.edu 36 2 165878484 165878484 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040143 exon8 c.G1143T p.M381I . . . FAM49A 81553 broad.mit.edu 36 2 16606882 16606882 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030797 exon6 c.C307A p.L103I . . . CSRNP3 80034 broad.mit.edu 36 2 166244273 166244273 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172173 exon7 c.G1522A p.E508K . . . TTC21B 79809 broad.mit.edu 36 2 166476110 166476110 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024753 exon18 c.C2434A p.L812I . . . SCN1A 6323 broad.mit.edu 36 2 166556417 166556417 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165964 exon26 c.A5530G p.T1844A . . . SCN9A 6335 broad.mit.edu 36 2 166793511 166793511 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_002977 exon22 c.G4109A p.R1370Q . . . SCN9A 6335 broad.mit.edu 36 2 166853253 166853253 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002977 exon10 c.G1254A p.Q418Q . . . SCN7A 6332 broad.mit.edu 36 2 167030603 167030603 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002976 exon7 c.C805T p.R269X . . . XIRP2 129446 broad.mit.edu 36 2 167468242 167468242 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199143 exon2 c.T4G p.F2V . . . XIRP2 129446 broad.mit.edu 36 2 167807969 167807969 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.A1155C p.E385D . . . XIRP2 129446 broad.mit.edu 36 2 167810460 167810460 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.A3646G p.T1216A . . . XIRP2 129446 broad.mit.edu 36 2 167810889 167810889 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.C4075T p.R1359X . . . XIRP2 129446 broad.mit.edu 36 2 167812220 167812220 + Silent SNP C G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.C5406G p.G1802G . . . XIRP2 129446 broad.mit.edu 36 2 167814333 167814333 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.T7519G p.Y2507D . . . STK39 27347 broad.mit.edu 36 2 168628268 168628268 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013233 exon14 c.T1364C p.V455A . . . STK39 27347 broad.mit.edu 36 2 168705469 168705469 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013233 exon6 c.G674A p.R225Q . . . ABCB11 8647 broad.mit.edu 36 2 169497233 169497233 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003742 exon24 c.C3113T p.T1038I . . . ABCB11 8647 broad.mit.edu 36 2 169501172 169501172 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003742 exon22 c.C2628T p.I876I . . . ABCB11 8647 broad.mit.edu 36 2 169534872 169534872 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003742 exon15 c.C1738A p.L580M . . . LRP2 4036 broad.mit.edu 36 2 169771803 169771803 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon39 c.C6673T p.R2225X . . . FASTKD1 79675 broad.mit.edu 36 2 170119944 170119944 + Nonsense_Mutation SNP C A A rs12618227 byCluster;byFrequency TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024622 exon7 c.G1150T p.E384X . . . FASTKD1 79675 broad.mit.edu 36 2 170125398 170125398 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024622 exon5 c.G716A p.R239Q . . . FASTKD1 79675 broad.mit.edu 36 2 170136691 170136691 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024622 exon2 c.G95A p.R32Q . . . KLHL23 151230 broad.mit.edu 36 2 170300934 170300934 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199290 exon4 c.C1164A p.F388L . . . GAD1 2571 broad.mit.edu 36 2 171410802 171410802 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000817 exon10 c.C985A p.L329I . . . METTL8 79828 broad.mit.edu 36 2 171896576 171896576 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024770 exon6 c.C704T p.A235V . . . ITGA6 3655 broad.mit.edu 36 2 173042207 173042207 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000210 exon4 c.G496A p.D166N . . . RAPGEF4 11069 broad.mit.edu 36 2 173563831 173563831 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007023 exon15 c.C1422A p.V474V RAPGEF4,central_nervous_system,brain,Substitution - Missense,+2 . . ZAK 51776 broad.mit.edu 36 2 173805359 173805359 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016653 exon14 c.C1129T p.R377W . . . CHRNA1 1134 broad.mit.edu 36 2 175321590 175321590 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000079 exon8 c.C1206T p.I402I . . . TTC30B 150737 broad.mit.edu 36 2 178124634 178124634 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152517 exon1 c.C1104T p.C368C . . . TTC30B 150737 broad.mit.edu 36 2 178125208 178125208 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152517 exon1 c.T530G p.F177C . . . TTC30A 92104 broad.mit.edu 36 2 178190947 178190947 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152275 exon1 c.A729C p.L243F . . . GEN1 348654 broad.mit.edu 36 2 17826073 17826073 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130009 exon14 c.G2113T p.E705X . . . PDE11A 50940 broad.mit.edu 36 2 178471040 178471040 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077197 exon5 c.C543T p.I181I . . . OSBPL6 114880 broad.mit.edu 36 2 178962060 178962060 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032523 exon21 c.T2235C p.H745H . . . TTN 7273 broad.mit.edu 36 2 179107486 179107486 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon186 c.C74906T p.S24969L . . . TTN 7273 broad.mit.edu 36 2 179112546 179112546 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon180 c.A71296G p.T23766A . . . TTN 7273 broad.mit.edu 36 2 179127076 179127076 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon161 c.C61812A p.S20604S . . . TTN 7273 broad.mit.edu 36 2 179136074 179136074 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.C55835T p.S18612L . . . TTN 7273 broad.mit.edu 36 2 179150301 179150301 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon152 c.T41811C p.L13937L . . . TTN 7273 broad.mit.edu 36 2 179156789 179156789 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon140 c.T38170C p.L12724L . . . TTN 7273 broad.mit.edu 36 2 179159634 179159634 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon136 c.C37044T p.I12348I . . . TTN 7273 broad.mit.edu 36 2 179161847 179161847 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon132 c.G35655T p.Q11885H . . . TTN 7273 broad.mit.edu 36 2 179177692 179177692 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon109 c.G27174T p.E9058D . . . TTN 7273 broad.mit.edu 36 2 179177819 179177819 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon109 c.C27047A p.S9016Y . . . TTN 7273 broad.mit.edu 36 2 179182903 179182903 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon100 c.G24297T p.M8099I . . . TTN 7273 broad.mit.edu 36 2 179183242 179183242 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon99 c.C24061T p.R8021C . . . TTN 7273 broad.mit.edu 36 2 179185285 179185285 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon94 c.G23017A p.E7673K . . . TTN 7273 broad.mit.edu 36 2 179206807 179206807 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon59 c.G15469A p.A5157T . . . TTN 7273 broad.mit.edu 36 2 179284157 179284157 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon94 c.T24319G p.F8107V . . . TTN 7273 broad.mit.edu 36 2 179285867 179285867 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon91 c.G23398T p.G7800X . . . TTN 7273 broad.mit.edu 36 2 179287988 179287988 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon87 c.G22438A p.D7480N . . . TTN 7273 broad.mit.edu 36 2 179288693 179288693 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon86 c.G21961A p.E7321K . . . TTN 7273 broad.mit.edu 36 2 179300687 179300687 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon65 c.C16131A p.F5377L . . . TTN 7273 broad.mit.edu 36 2 179313522 179313522 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon45 c.C11594A p.S3865Y . . . TTN 7273 broad.mit.edu 36 2 179314163 179314163 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon45 c.G10953T p.E3651D . . . TTN 7273 broad.mit.edu 36 2 179319734 179319734 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133379 exon46 c.G15638C p.G5213A . . . TTN 7273 broad.mit.edu 36 2 179319910 179319910 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133379 exon46 c.G15462T p.E5154D . . . TTN 7273 broad.mit.edu 36 2 179322444 179322444 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133379 exon46 c.C12928A p.Q4310K . . . TTN 7273 broad.mit.edu 36 2 179323512 179323512 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133379 exon46 c.G11860T p.E3954X . . . TTN 7273 broad.mit.edu 36 2 179324658 179324658 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133379 exon46 c.G10714T p.D3572Y . . . TTN 7273 broad.mit.edu 36 2 179344292 179344292 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133379 exon34 c.T8007C p.S2669S . . . CCDC141 285025 broad.mit.edu 36 2 179410404 179410404 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173648 exon23 c.G3787A p.E1263K . . . CCDC141 285025 broad.mit.edu 36 2 179429340 179429340 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173648 exon18 c.G2754T p.K918N . . . CWC22 57703 broad.mit.edu 36 2 180537550 180537550 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020943 exon13 c.C1366T p.R456C . . . CWC22 57703 broad.mit.edu 36 2 180546186 180546186 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020943 exon8 c.G783A p.A261A . . . CERKL 375298 broad.mit.edu 36 2 182131621 182131621 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201548 exon5 c.G737T p.R246I . . . SSFA2 6744 broad.mit.edu 36 2 182469897 182469897 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006751 exon4 c.G325T p.G109X . . . FRZB 2487 broad.mit.edu 36 2 183407930 183407930 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001463 exon6 c.A869G p.D290G . . . NCKAP1 10787 broad.mit.edu 36 2 183503670 183503670 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013436 exon27 c.C2951T p.S984L . . . NUP35 129401 broad.mit.edu 36 2 183731287 183731287 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138285 exon7 c.G641A p.R214H . . . FSIP2 401024 broad.mit.edu 36 2 186379453 186379453 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173651 exon17 c.G17442A p.S5814S . . . FAM171B 165215 broad.mit.edu 36 2 187324269 187324269 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177454 exon5 c.G888T p.M296I . . . COL3A1 1281 broad.mit.edu 36 2 189582092 189582092 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000090 exon48 c.T3723C p.V1241V . . . COL5A2 1290 broad.mit.edu 36 2 189609692 189609692 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000393 exon52 c.T4008C p.C1336C . . . COL5A2 1290 broad.mit.edu 36 2 189625939 189625939 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000393 exon39 c.G2604T p.Q868H . . . COL5A2 1290 broad.mit.edu 36 2 189683376 189683376 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000393 exon2 c.T142C p.Y48H . . . WDR75 84128 broad.mit.edu 36 2 190040523 190040523 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032168 exon14 c.C1532T p.S511F . . . STAT1 6772 broad.mit.edu 36 2 191562596 191562596 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007315 exon12 c.T1087G p.L363V . . . MYO1B 4430 broad.mit.edu 36 2 191958924 191958924 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012223 exon16 c.T1423G p.F475V . . . MYO1B 4430 broad.mit.edu 36 2 191969443 191969443 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012223 exon21 c.T2270G p.I757S . . . TMEFF2 23671 broad.mit.edu 36 2 192572040 192572040 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016192 exon6 c.C676T p.R226X . . . DNAH7 56171 broad.mit.edu 36 2 196389885 196389885 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018897 exon51 c.C9473T p.S3158L . . . DNAH7 56171 broad.mit.edu 36 2 196473288 196473288 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018897 exon28 c.C4511T p.A1504V . . . DNAH7 56171 broad.mit.edu 36 2 196599866 196599866 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018897 exon7 c.T530C p.V177A . . . HECW2 57520 broad.mit.edu 36 2 196891688 196891688 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020760 exon9 c.C2171T p.S724L . . . HECW2 57520 broad.mit.edu 36 2 196891879 196891879 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020760 exon9 c.C1980T p.C660C . . . GTF3C3 9330 broad.mit.edu 36 2 197346099 197346099 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012086 exon14 c.G1855A p.V619I . . . SF3B1 23451 broad.mit.edu 36 2 197973818 197973818 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012433 exon18 c.G2584A p.E862K . . . COQ10B 80219 broad.mit.edu 36 2 198032981 198032981 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025147 exon2 c.G185A p.R62Q . . . MOBKL3 25843 broad.mit.edu 36 2 198108541 198108541 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199482 exon3 c.A70G p.K24E . . . RFTN2 130132 broad.mit.edu 36 2 198204006 198204006 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144629 exon5 c.C902T p.S301F . . . AOX1 316 broad.mit.edu 36 2 201229811 201229811 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159 exon27 c.C3077T p.A1026V . . . CLK1 1195 broad.mit.edu 36 2 201429938 201429938 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162407 exon8 c.A974C p.K325T . . . ORC2 4999 broad.mit.edu 36 2 201508702 201508702 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006190 exon9 c.G673T p.E225X . . . CFLAR 8837 broad.mit.edu 36 2 201733749 201733749 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127183 exon9 c.G1143T p.K381N . . . ALS2CR11 151254 broad.mit.edu 36 2 202174734 202174734 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152525 exon4 c.C489T p.F163F . . . NOP58 51602 broad.mit.edu 36 2 202838925 202838925 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015934 exon1 c.G16T p.E6X . . . ICA1L 130026 broad.mit.edu 36 2 203362035 203362035 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138468 exon12 c.G1006T p.D336Y . . . PARD3B 117583 broad.mit.edu 36 2 205874505 205874505 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057177 exon17 c.C2258T p.S753L . . . GPR1 2825 broad.mit.edu 36 2 206749275 206749275 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098199 exon3 c.C942A p.R314R . . . ZDBF2 57683 broad.mit.edu 36 2 206877696 206877696 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020923 exon5 c.G199T p.D67Y . . . ZDBF2 57683 broad.mit.edu 36 2 206879076 206879076 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020923 exon5 c.G1579T p.V527F . . . ZDBF2 57683 broad.mit.edu 36 2 206879301 206879301 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020923 exon5 c.G1804T p.G602X . . . ZDBF2 57683 broad.mit.edu 36 2 206880119 206880119 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020923 exon5 c.G2622A p.S874S . . . ZDBF2 57683 broad.mit.edu 36 2 206881302 206881302 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020923 exon5 c.G3805A p.E1269K . . . KLF7 8609 broad.mit.edu 36 2 207738497 207738497 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003709 exon1 c.A41G p.Q14R . . . FAM119A 151194 broad.mit.edu 36 2 208186151 208186151 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127395 exon4 c.G521A p.R174Q . . . CPS1 1373 broad.mit.edu 36 2 211189490 211189490 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122634 exon11 c.G1314T p.K438N . . . IKZF2 22807 broad.mit.edu 36 2 213581039 213581039 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016260 exon8 c.C871T p.R291X . . . ABCA12 26154 broad.mit.edu 36 2 215625470 215625470 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173076 exon5 c.C493A p.L165I . . . TNS1 7145 broad.mit.edu 36 2 218421355 218421355 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022648 exon17 c.G1755T p.Q585H . . . VIL1 7429 broad.mit.edu 36 2 219005142 219005142 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007127 exon12 c.G1333A p.V445I . . . STK36 27148 broad.mit.edu 36 2 219269523 219269523 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A A A A Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_015690 exon22 c.A2541G p.G847G . . . CYP27A1 1593 broad.mit.edu 36 2 219355368 219355368 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000784 exon1 c.C219T p.F73F . . . CYP27A1 1593 broad.mit.edu 36 2 219387400 219387400 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000784 exon7 c.T1238G p.V413G . . . CDK5R2 8941 broad.mit.edu 36 2 219533365 219533365 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003936 exon1 c.C579T p.F193F . . . CCDC108 255101 broad.mit.edu 36 2 219596272 219596272 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194302 exon16 c.G2721A p.S907S . . . ANKZF1 55139 broad.mit.edu 36 2 219809343 219809343 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042410 exon14 c.G2113A p.D705N . . . TUBA4A 7277 broad.mit.edu 36 2 219824670 219824670 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006000 exon3 c.G236A p.R79Q . . . PTPRN 5798 broad.mit.edu 36 2 219880807 219880807 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199763 exon2 c.C117T p.G39G . . . SPEG 10290 broad.mit.edu 36 2 220024125 220024125 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005876 exon5 c.T2137C p.S713P . . . SPEG 10290 broad.mit.edu 36 2 220050302 220050302 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005876 exon20 c.C4620T p.C1540C . . . OBSL1 23363 broad.mit.edu 36 2 220135520 220135520 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173431 exon8 c.A2801G p.D934G . . . OBSL1 23363 broad.mit.edu 36 2 220139890 220139890 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173431 exon5 c.A2040G p.R680R . . . FARSB 10056 broad.mit.edu 36 2 223212594 223212594 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005687 exon5 c.G404A p.R135Q . . . FARSB 10056 broad.mit.edu 36 2 223221706 223221706 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005687 exon2 c.A111C p.E37D . . . ACSL3 2181 broad.mit.edu 36 2 223481895 223481895 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004457 exon4 c.G161A p.R54Q . . . MRPL44 65080 broad.mit.edu 36 2 224532717 224532717 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022915 exon2 c.G402T p.Q134H . . . DOCK10 55619 broad.mit.edu 36 2 225360288 225360288 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014689 exon49 c.C5489T p.A1830V . . . KIAA1486 57624 broad.mit.edu 36 2 226155550 226155550 + Silent SNP G A A rs9917362 byFrequency;byHapMap TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020864 exon4 c.G1173A p.A391A . . . COL4A3 1285 broad.mit.edu 36 2 227882183 227882183 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000091 exon50 c.C4660T p.P1554S . . . SLC19A3 80704 broad.mit.edu 36 2 228272402 228272402 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025243 exon3 c.C273A p.I91I . . . DNER 92737 broad.mit.edu 36 2 229931580 229931580 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139072 exon13 c.G2134T p.D712Y . . . DNER 92737 broad.mit.edu 36 2 229961346 229961346 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139072 exon11 c.C1734T p.C578C . . . TRIP12 9320 broad.mit.edu 36 2 230369580 230369580 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004238 exon24 c.C3562T p.R1188X . . . SLC16A14 151473 broad.mit.edu 36 2 230619399 230619399 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152527 exon4 c.G687T p.L229L . . . SP100 6672 broad.mit.edu 36 2 231037092 231037092 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080391 exon11 c.G1124A p.R375Q . . . NCL 4691 broad.mit.edu 36 2 232029012 232029012 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005381 exon12 c.C1785T p.S595S . . . CHRND 1144 broad.mit.edu 36 2 233107218 233107218 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000751 exon11 c.C1293A p.L431L . . . USP40 55230 broad.mit.edu 36 2 234071938 234071938 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018218 exon21 c.G2502T p.V834V . . . USP40 55230 broad.mit.edu 36 2 234093017 234093017 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018218 exon16 c.A2157C p.X719Y . . . UGT1A9 54600 broad.mit.edu 36 2 234245761 234245761 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021027 exon1 c.G442A p.D148N . . . UGT1A3 54659 broad.mit.edu 36 2 234302727 234302727 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019093 exon1 c.G216T p.E72D . . . AGAP1 116987 broad.mit.edu 36 2 236371240 236371240 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037131 exon7 c.G772A p.A258T . . . COL6A3 1293 broad.mit.edu 36 2 237913924 237913924 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057166 exon35 c.G6553A p.D2185N . . . COL6A3 1293 broad.mit.edu 36 2 237948142 237948142 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057166 exon5 c.G1510A p.A504T . . . COL6A3 1293 broad.mit.edu 36 2 237968128 237968128 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004369 exon3 c.G550A p.A184T . . . ATAD2B 54454 broad.mit.edu 36 2 23838627 23838627 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017552 exon24 c.G3350T p.R1117I . . . UBXN2A 165324 broad.mit.edu 36 2 24076093 24076093 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181713 exon7 c.G632T p.R211I . . . MTERFD2 130916 broad.mit.edu 36 2 241687566 241687566 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182501 exon2 c.G438T p.K146N . . . SEPT2 4735 broad.mit.edu 36 2 241924167 241924167 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008491 exon6 c.G322A p.A108T . . . PFN4 375189 broad.mit.edu 36 2 24197630 24197630 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199346 exon3 c.G162T p.K54N . . . NCOA1 8648 broad.mit.edu 36 2 24803021 24803021 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003743 exon13 c.G2659A p.D887N . . . C2orf39 92749 broad.mit.edu 36 2 26525089 26525089 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145038 exon11 c.G1423A p.A475T . . . TMEM214 54867 broad.mit.edu 36 2 27112064 27112064 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017727 exon4 c.C601A p.L201M . . . CAD 790 broad.mit.edu 36 2 27309834 27309834 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004341 exon20 c.C3142T p.R1048C . . . CAD 790 broad.mit.edu 36 2 27314850 27314850 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004341 exon31 c.C4908T p.C1636C . . . GTF3C2 2976 broad.mit.edu 36 2 27405611 27405611 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035521 exon14 c.C1920T p.F640F . . . NRBP1 29959 broad.mit.edu 36 2 27513200 27513200 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013392 exon8 c.G738T p.E246D . . . CCDC121 79635 broad.mit.edu 36 2 27704057 27704057 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142683 exon2 c.C600A p.F200L . . . SLC4A1AP 22950 broad.mit.edu 36 2 27745634 27745634 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018158 exon5 c.T1221G p.D407E . . . SLC4A1AP 22950 broad.mit.edu 36 2 27754145 27754145 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018158 exon8 c.C1613T p.A538V . . . SLC4A1AP 22950 broad.mit.edu 36 2 27764331 27764331 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_018158 exon11 c.G2143T p.E715X . . . FAM179A 165186 broad.mit.edu 36 2 29103295 29103295 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199280 exon14 c.G1926T p.E642D . . . CLIP4 79745 broad.mit.edu 36 2 29208555 29208555 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024692 exon4 c.G307T p.D103Y . . . CLIP4 79745 broad.mit.edu 36 2 29233671 29233671 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024692 exon11 c.G1353T p.K451N . . . ALK 238 broad.mit.edu 36 2 29460122 29460122 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004304 exon5 c.C1262T p.A421V . . . LCLAT1 253558 broad.mit.edu 36 2 30638584 30638584 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182551 exon5 c.G547A p.E183K . . . CAPN13 92291 broad.mit.edu 36 2 30853941 30853941 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144575 exon3 c.C267T p.G89G . . . XDH 7498 broad.mit.edu 36 2 31446734 31446734 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000379 exon18 c.G1971A p.A657A . . . SPAST 6683 broad.mit.edu 36 2 32215206 32215206 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199436 exon9 c.T1220G p.F407C . . . SLC30A6 55676 broad.mit.edu 36 2 32299264 32299264 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193513 exon15 c.G1484T p.R495I . . . NLRC4 58484 broad.mit.edu 36 2 32329284 32329284 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021209 exon4 c.G1153T p.D385Y . . . BIRC6 57448 broad.mit.edu 36 2 32541881 32541881 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016252 exon24 c.A4869G p.A1623A . . . BIRC6 57448 broad.mit.edu 36 2 32696449 32696449 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016252 exon74 c.G14548T p.E4850X . . . CRIM1 51232 broad.mit.edu 36 2 36560190 36560190 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016441 exon7 c.C1221T p.G407G . . . CDC42EP3 10602 broad.mit.edu 36 2 37726983 37726983 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006449 exon2 c.C252A p.F84L . . . SOS1 6654 broad.mit.edu 36 2 39078013 39078013 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005633 exon18 c.G2849T p.R950I . . . SLC8A1 6546 broad.mit.edu 36 2 40510704 40510704 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001112800 exon1 c.A221C p.K74T . . . EML4 27436 broad.mit.edu 36 2 42337188 42337188 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145076 exon3 c.C252A p.T84T . . . EML4 27436 broad.mit.edu 36 2 42381998 42381998 + De_novo_Start_OutOfFrame SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145076 exon13 c.C1429A p.L477M . . . PLEKHH2 130271 broad.mit.edu 36 2 43801359 43801359 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172069 exon16 c.G2508T p.K836N . . . PLEKHH2 130271 broad.mit.edu 36 2 43807006 43807006 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172069 exon17 c.G2633A p.R878Q . . . DYNC2LI1 51626 broad.mit.edu 36 2 43882287 43882287 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193464 exon10 c.C740A p.S247X . . . SRBD1 55133 broad.mit.edu 36 2 45557695 45557695 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018079 exon16 c.G1990T p.D664Y . . . ATP6V1E2 90423 broad.mit.edu 36 2 46593106 46593106 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080653 exon2 c.C249T p.V83V . . . MSH2 4436 broad.mit.edu 36 2 47489081 47489081 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000251 exon2 c.G249T p.M83I . . . MSH6 2956 broad.mit.edu 36 2 47876602 47876602 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000179 exon3 c.G523A p.A175T . . . MSH6 2956 broad.mit.edu 36 2 47881391 47881391 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000179 exon4 c.G2765A p.R922Q . . . KLRAQ1 129285 broad.mit.edu 36 2 48546159 48546159 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135629 exon9 c.G771A p.G257G . . . STON1-GTF2A1L 286749 broad.mit.edu 36 2 48750442 48750442 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006872 exon7 c.C1056T p.S352S . . . NRXN1 9378 broad.mit.edu 36 2 50578321 50578321 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135659 exon15 c.C2653A p.H885N . . . CCDC88A 55704 broad.mit.edu 36 2 55393102 55393102 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135597 exon23 c.C4048A p.L1350I . . . CCDC88A 55704 broad.mit.edu 36 2 55413301 55413301 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135597 exon16 c.G2760T p.Q920H . . . REL 5966 broad.mit.edu 36 2 60981677 60981677 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002908 exon4 c.G349T p.E117X . . . PUS10 150962 broad.mit.edu 36 2 61089567 61089567 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144709 exon3 c.C214T p.R72X . . . USP34 9736 broad.mit.edu 36 2 61269553 61269553 + Silent SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014709 exon79 c.T10029G p.T3343T . . . USP34 9736 broad.mit.edu 36 2 61269687 61269687 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014709 exon79 c.C9895T p.L3299F . . . USP34 9736 broad.mit.edu 36 2 61399871 61399871 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014709 exon22 c.C3109T p.R1037X . . . USP34 9736 broad.mit.edu 36 2 61420068 61420068 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014709 exon18 c.C2666T p.S889L . . . FAM161A 84140 broad.mit.edu 36 2 61920848 61920848 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032180 exon3 c.A795G p.V265V . . . EHBP1 23301 broad.mit.edu 36 2 63125737 63125737 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142614 exon22 c.G3418A p.E1140K . . . UGP2 7360 broad.mit.edu 36 2 63963253 63963253 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001521 exon4 c.G372A p.E124E . . . VPS54 51542 broad.mit.edu 36 2 63974091 63974091 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016516 exon23 c.G2911A p.E971K . . . VPS54 51542 broad.mit.edu 36 2 64014500 64014500 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016516 exon12 c.T1550G p.F517C . . . AFTPH 54812 broad.mit.edu 36 2 64633618 64633618 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017657 exon2 c.G1506T p.Q502H . . . MEIS1 4211 broad.mit.edu 36 2 66649689 66649689 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002398 exon12 c.C1118A p.P373H . . . ETAA1 54465 broad.mit.edu 36 2 67479926 67479926 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019002 exon2 c.G345T p.K115N . . . PROKR1 10887 broad.mit.edu 36 2 68735611 68735611 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138964 exon2 c.C581T p.A194V . . . PROKR1 10887 broad.mit.edu 36 2 68735759 68735759 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138964 exon2 c.C729T p.G243G . . . ARHGAP25 9938 broad.mit.edu 36 2 68862907 68862907 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166276 exon2 c.C279T p.I93I . . . BMP10 27302 broad.mit.edu 36 2 68946718 68946718 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014482 exon2 c.C824A p.S275Y . . . ANTXR1 84168 broad.mit.edu 36 2 69153716 69153716 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053034 exon6 c.C471A p.L157L . . . AAK1 22848 broad.mit.edu 36 2 69590076 69590076 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014911 exon14 c.A1797G p.Q599Q . . . ANXA4 307 broad.mit.edu 36 2 69899286 69899286 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001153 exon10 c.A680C p.K227T . . . ADD2 119 broad.mit.edu 36 2 70787016 70787016 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185054 exon3 c.G33A p.S11S . . . ZNF638 27332 broad.mit.edu 36 2 71507638 71507638 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014497 exon24 c.G5131T p.E1711X . . . DYSF 8291 broad.mit.edu 36 2 71759747 71759747 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130982 exon53 c.G5916T p.K1972N . . . EXOC6B 23233 broad.mit.edu 36 2 72561352 72561352 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015189 exon17 c.G1701T p.E567D . . . ALMS1 7840 broad.mit.edu 36 2 73528741 73528741 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015120 exon8 c.G1576T p.E526X . . . ALMS1 7840 broad.mit.edu 36 2 73533431 73533431 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015120 exon8 c.C6266A p.S2089Y . . . ALMS1 7840 broad.mit.edu 36 2 73570986 73570986 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015120 exon10 c.T8389G p.L2797V . . . DQX1 165545 broad.mit.edu 36 2 74603972 74603972 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133637 exon5 c.C1017A p.V339V . . . HTRA2 27429 broad.mit.edu 36 2 74613528 74613528 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013247 exon8 c.G1285T p.E429X . . . TACR1 6869 broad.mit.edu 36 2 75130276 75130276 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001058 exon5 c.A1015G p.T339A . . . TACR1 6869 broad.mit.edu 36 2 75201228 75201228 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015727 exon2 c.G564A p.P188P . . . FAM176A 84141 broad.mit.edu 36 2 75598745 75598745 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032181 exon3 c.G30A p.E10E . . . MRPL19 9801 broad.mit.edu 36 2 75732779 75732779 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014763 exon3 c.C225A p.F75L . . . CTNNA2 1496 broad.mit.edu 36 2 80636376 80636376 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004389 exon12 c.G1591T p.E531X . . . CTNNA2 1496 broad.mit.edu 36 2 80684754 80684754 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004389 exon16 c.C2237T p.A746V . . . SUCLG1 8802 broad.mit.edu 36 2 84512247 84512247 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003849 exon7 c.G721A p.E241K . . . DNAH6 1768 broad.mit.edu 36 2 84664718 84664718 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001370 exon15 c.G2314T p.D772Y . . . IMMT 10989 broad.mit.edu 36 2 86225231 86225231 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100169 exon15 c.G1945T p.E649X . . . IMMT 10989 broad.mit.edu 36 2 86225395 86225395 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100169 exon15 c.C1781T p.A594V . . . REEP1 65055 broad.mit.edu 36 2 86332699 86332699 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022912 exon5 c.C309T p.I103I . . . RNF103 7844 broad.mit.edu 36 2 86701050 86701050 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198952 exon2 c.G280A p.E94K . . . KIDINS220 57498 broad.mit.edu 36 2 8876281 8876281 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020738 exon3 c.G202T p.D68Y . . . MBOAT2 129642 broad.mit.edu 36 2 8934773 8934773 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138799 exon7 c.G528A p.E176E . . . ZNF514 84874 broad.mit.edu 36 2 95179349 95179349 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032788 exon5 c.C608A p.S203Y . . . IAH1 285148 broad.mit.edu 36 2 9545778 9545778 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039613 exon6 c.G616T p.E206X . . . ADAM17 6868 broad.mit.edu 36 2 9552240 9552240 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003183 exon15 c.A1891G p.T631A . . . NCAPH 23397 broad.mit.edu 36 2 96383741 96383741 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015341 exon9 c.G1096A p.D366N . . . ZAP70 7535 broad.mit.edu 36 2 97708063 97708063 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079 exon4 c.G479A p.R160Q . . . CNGA3 1261 broad.mit.edu 36 2 98379623 98379623 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001298 exon8 c.T1558C p.Y520H . . . INPP4A 3631 broad.mit.edu 36 2 98570474 98570474 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134225 exon25 c.G2890A p.E964K . . . MITD1 129531 broad.mit.edu 36 2 99156835 99156835 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138798 exon2 c.G228T p.K76N . . . LYG1 129530 broad.mit.edu 36 2 99278550 99278550 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174898 exon3 c.C16A p.L6M . . . EIF5B 9669 broad.mit.edu 36 2 99344139 99344139 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015904 exon4 c.G343T p.E115X . . . EIF5B 9669 broad.mit.edu 36 2 99377636 99377636 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015904 exon21 c.G3112A p.D1038N . . . AFF3 3899 broad.mit.edu 36 2 99990158 99990158 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025108 exon5 c.C446A p.S149Y . . . AFF3 3899 broad.mit.edu 36 2 99991824 99991824 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025108 exon4 c.T131C p.V44A . . . FILIP1L 11259 broad.mit.edu 36 3 101051128 101051128 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182909 exon5 c.G2082T p.E694D . . . TBC1D23 55773 broad.mit.edu 36 3 101512038 101512038 + Silent SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199198 exon14 c.T1515G p.V505V . . . TOMM70A 9868 broad.mit.edu 36 3 101567194 101567194 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014820 exon12 c.G1731A p.S577S . . . LNP1 348801 broad.mit.edu 36 3 101657333 101657333 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085451 exon4 c.G410T p.R137I . . . TFG 10342 broad.mit.edu 36 3 101930296 101930296 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006070 exon4 c.C319T p.R107X . . . ABI3BP 25890 broad.mit.edu 36 3 101991000 101991000 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015429 exon24 c.C2017T p.H673Y . . . IMPG2 50939 broad.mit.edu 36 3 102521244 102521244 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016247 exon2 c.G208T p.E70X . . . ZBTB11 27107 broad.mit.edu 36 3 102852701 102852701 + Nonstop_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014415 exon11 c.G3161T p.X1054L . . . SEC13 6396 broad.mit.edu 36 3 10320795 10320795 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136232 exon8 c.T728G p.L243W . . . CCDC54 84692 broad.mit.edu 36 3 108579548 108579548 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032600 exon1 c.G424T p.E142X . . . DZIP3 9666 broad.mit.edu 36 3 109889551 109889551 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014648 exon29 c.C3188T p.A1063V . . . PVRL3 25945 broad.mit.edu 36 3 112320229 112320229 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015480 exon3 c.C539T p.S180F . . . ZBED2 79413 broad.mit.edu 36 3 112795723 112795723 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024508 exon2 c.G16T p.D6Y . . . ATG7 10533 broad.mit.edu 36 3 11325480 11325480 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006395 exon5 c.G356A p.G119D . . . CCDC80 151887 broad.mit.edu 36 3 113808764 113808764 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199511 exon7 c.T2455A p.L819I . . . KIAA2018 205717 broad.mit.edu 36 3 114860257 114860257 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009899 exon7 c.G2962T p.D988Y . . . ATP6V1A 523 broad.mit.edu 36 3 115006933 115006933 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001690 exon14 c.G1632A p.M544I . . . KIAA1407 57577 broad.mit.edu 36 3 115238272 115238272 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020817 exon5 c.T467G p.F156C . . . ARHGAP31 57514 broad.mit.edu 36 3 120615677 120615677 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020754 exon12 c.G2211T p.E737D . . . ARHGAP31 57514 broad.mit.edu 36 3 120616868 120616868 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020754 exon12 c.C3402T p.V1134V . . . PLA1A 51365 broad.mit.edu 36 3 120811083 120811083 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015900 exon4 c.C532T p.L178F . . . GPR156 165829 broad.mit.edu 36 3 121368752 121368752 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168271 exon9 c.C2250A p.F750L . . . LRRC58 116064 broad.mit.edu 36 3 121536591 121536591 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099678 exon3 c.G715T p.E239X . . . POLQ 10721 broad.mit.edu 36 3 122691889 122691889 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199420 exon16 c.G2579A p.R860Q . . . HCLS1 3059 broad.mit.edu 36 3 122848866 122848866 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005335 exon4 c.G278A p.R93Q . . . GOLGB1 2804 broad.mit.edu 36 3 122866468 122866468 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004487 exon21 c.C9640T p.R3214X . . . GOLGB1 2804 broad.mit.edu 36 3 122895909 122895909 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004487 exon13 c.G6136T p.E2046X . . . GOLGB1 2804 broad.mit.edu 36 3 122897700 122897700 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004487 exon13 c.G4345T p.E1449X . . . GOLGB1 2804 broad.mit.edu 36 3 122897880 122897880 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004487 exon13 c.G4165T p.E1389X . . . CASR 846 broad.mit.edu 36 3 123458797 123458797 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000388 exon3 c.C365A p.S122Y . . . CASR 846 broad.mit.edu 36 3 123463804 123463804 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000388 exon4 c.A1232G p.Y411C . . . CASR 846 broad.mit.edu 36 3 123485317 123485317 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000388 exon7 c.C1826T p.T609M . . . DTX3L 151636 broad.mit.edu 36 3 123771158 123771158 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138287 exon3 c.G1532A p.G511E . . . SEMA5B 54437 broad.mit.edu 36 3 124129490 124129490 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031702 exon8 c.C687T p.C229C . . . CCDC14 64770 broad.mit.edu 36 3 125116604 125116604 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022757 exon12 c.G2451T p.K817N . . . CCDC14 64770 broad.mit.edu 36 3 125148480 125148480 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022757 exon7 c.G1082T p.R361I . . . KALRN 8997 broad.mit.edu 36 3 125470408 125470408 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003947 exon5 c.C579A p.F193L . . . KALRN 8997 broad.mit.edu 36 3 125600241 125600241 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003947 exon13 c.G2173A p.A725T . . . RAF1 5894 broad.mit.edu 36 3 12601681 12601681 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002880 exon15 c.C1608T p.I536I . . . CCDC37 348807 broad.mit.edu 36 3 127634704 127634704 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182628 exon14 c.C1389A p.V463V . . . CHCHD6 84303 broad.mit.edu 36 3 127934639 127934639 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032343 exon4 c.G295A p.D99N . . . RPL32 6161 broad.mit.edu 36 3 12856657 12856657 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001007073 exon2 c.G80A p.R27Q . . . RAB7A 7879 broad.mit.edu 36 3 130008058 130008058 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004637 exon4 c.C334T p.P112S . . . MBD4 8930 broad.mit.edu 36 3 130633083 130633083 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003925 exon8 c.A1694C p.K565T . . . PLXND1 23129 broad.mit.edu 36 3 130773042 130773042 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015103 exon17 c.G3336A p.T1112T . . . TMCC1 23023 broad.mit.edu 36 3 130856537 130856537 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017395 exon5 c.C1611T p.I537I . . . COL6A5 256076 broad.mit.edu 36 3 131642331 131642331 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153264 exon35 c.C6459A p.F2153L . . . COL6A6 131873 broad.mit.edu 36 3 131850719 131850719 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102608 exon32 c.G5356A p.D1786N . . . ATP2C1 27032 broad.mit.edu 36 3 132202834 132202834 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199183 exon27 c.A2662C p.K888Q . . . MRPL3 11222 broad.mit.edu 36 3 132669670 132669670 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007208 exon9 c.C849A p.I283I . . . ACPP 55 broad.mit.edu 36 3 133533736 133533736 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099 exon4 c.G314A p.R105Q . . . TF 7018 broad.mit.edu 36 3 134967837 134967837 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001063 exon12 c.G1356A p.K452K . . . RYK 6259 broad.mit.edu 36 3 135377510 135377510 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002958 exon12 c.G1367A p.G456D . . . RYK 6259 broad.mit.edu 36 3 135390399 135390399 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002958 exon9 c.A1072C p.K358Q . . . MSL2 55167 broad.mit.edu 36 3 137354102 137354102 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018133 exon2 c.A311C p.K104T . . . STAG1 10274 broad.mit.edu 36 3 137559271 137559271 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005862 exon28 c.C3046T p.R1016X . . . DZIP1L 199221 broad.mit.edu 36 3 139264402 139264402 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173543 exon16 c.G2250T p.E750D . . . ESYT3 83850 broad.mit.edu 36 3 139675135 139675135 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031913 exon19 c.C2305T p.R769C . . . CEP70 80321 broad.mit.edu 36 3 139771908 139771908 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024491 exon6 c.G407T p.R136M . . . MRPS22 56945 broad.mit.edu 36 3 140557311 140557311 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020191 exon7 c.A976C p.N326H . . . COPB2 9276 broad.mit.edu 36 3 140584954 140584954 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004766 exon2 c.A17G p.D6G . . . NMNAT3 349565 broad.mit.edu 36 3 140780434 140780434 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178177 exon3 c.C152T p.A51V . . . TMEM43 79188 broad.mit.edu 36 3 14151287 14151287 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024334 exon8 c.C600T p.V200V . . . GRK7 131890 broad.mit.edu 36 3 142982051 142982051 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139209 exon2 c.C758A p.S253Y GRK7,skin,NS,Substitution - Missense,0 . . ATR 545 broad.mit.edu 36 3 143709554 143709554 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184 exon28 c.G4940A p.R1647H . . . ATR 545 broad.mit.edu 36 3 143751138 143751138 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184 exon15 c.G3044A p.R1015Q . . . SLC9A9 285195 broad.mit.edu 36 3 144998412 144998412 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173653 exon3 c.C402A p.F134L . . . PLSCR4 57088 broad.mit.edu 36 3 147395725 147395725 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020353 exon8 c.G821T p.S274I . . . PLSCR2 57047 broad.mit.edu 36 3 147649793 147649793 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020359 exon7 c.T535C p.S179P . . . PLSCR1 5359 broad.mit.edu 36 3 147722434 147722434 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021105 exon6 c.G452A p.R151Q . . . C3orf20 84077 broad.mit.edu 36 3 14776487 14776487 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184958 exon14 c.C1964A p.S655Y . . . ZIC4 84107 broad.mit.edu 36 3 148596340 148596340 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168378 exon3 c.G827A p.R276Q . . . ZIC1 7545 broad.mit.edu 36 3 148613054 148613054 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003412 exon2 c.G1042A p.D348N . . . FGD5 152273 broad.mit.edu 36 3 14942686 14942686 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152536 exon18 c.C4174A p.L1392I . . . NR2C2 7182 broad.mit.edu 36 3 15030255 15030255 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003298 exon4 c.A285G p.Q95Q . . . HPS3 84343 broad.mit.edu 36 3 150355586 150355586 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032383 exon8 c.C1403T p.S468L . . . CP 1356 broad.mit.edu 36 3 150410740 150410740 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000096 exon3 c.G511A p.D171N . . . NR2C2 7182 broad.mit.edu 36 3 15046898 15046898 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003298 exon10 c.G1102A p.D368N . . . TM4SF4 7104 broad.mit.edu 36 3 150688110 150688110 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004617 exon3 c.G279A p.T93T . . . TSC22D2 9819 broad.mit.edu 36 3 151658866 151658866 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014779 exon4 c.G2096T p.S699I . . . EIF2A 83939 broad.mit.edu 36 3 151772845 151772845 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032025 exon10 c.T1222C p.L408L . . . FAM194A 131831 broad.mit.edu 36 3 151869849 151869849 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152394 exon12 c.C1423T p.P475S . . . MED12L 116931 broad.mit.edu 36 3 152391286 152391286 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053002 exon13 c.G1846A p.A616T . . . MED12L 116931 broad.mit.edu 36 3 152393993 152393993 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053002 exon14 c.C1995A p.S665S . . . GPR171 29909 broad.mit.edu 36 3 152398986 152398986 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013308 exon3 c.G878A p.R293H . . . GPR87 53836 broad.mit.edu 36 3 152494795 152494795 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023915 exon3 c.A929C p.D310A . . . P2RY13 53829 broad.mit.edu 36 3 152529010 152529010 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176894 exon2 c.C524T p.S175F . . . P2RY12 64805 broad.mit.edu 36 3 152538821 152538821 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022788 exon3 c.G503A p.R168K . . . MED12L 116931 broad.mit.edu 36 3 152578612 152578612 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053002 exon29 c.C4334A p.S1445Y . . . MED12L 116931 broad.mit.edu 36 3 152613750 152613750 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053002 exon40 c.C6169T p.R2057X . . . IGSF10 285313 broad.mit.edu 36 3 152647547 152647547 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178822 exon4 c.C2912T p.S971F . . . ARHGEF26 26084 broad.mit.edu 36 3 155440873 155440873 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015595 exon12 c.T2115G p.D705E . . . MME 4311 broad.mit.edu 36 3 156317393 156317393 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000902 exon7 c.C578A p.S193Y . . . C3orf33 285315 broad.mit.edu 36 3 156964014 156964014 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173657 exon6 c.C742T p.R248C . . . GMPS 8833 broad.mit.edu 36 3 157111667 157111667 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003875 exon7 c.A791G p.Q264R . . . TIPARP 25976 broad.mit.edu 36 3 157878577 157878577 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015508 exon2 c.C397T p.R133X . . . GALNTL2 117248 broad.mit.edu 36 3 16212330 16212330 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054110 exon2 c.A599G p.H200R . . . B3GALNT1 8706 broad.mit.edu 36 3 162286803 162286803 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033168 exon4 c.G434A p.R145Q . . . NMD3 51068 broad.mit.edu 36 3 162427741 162427741 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015938 exon4 c.A192G p.P64P . . . SI 6476 broad.mit.edu 36 3 166207415 166207415 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001041 exon37 c.G4289A p.G1430E . . . SI 6476 broad.mit.edu 36 3 166265759 166265759 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001041 exon7 c.A791G p.D264G . . . BCHE 590 broad.mit.edu 36 3 167031439 167031439 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000055 exon2 c.C77A p.S26X . . . PLCL2 23228 broad.mit.edu 36 3 17027674 17027674 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144382 exon3 c.G1813A p.D605N . . . MECOM 2122 broad.mit.edu 36 3 170295672 170295672 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105077 exon13 c.C2536T p.R846C . . . PRKCI 5584 broad.mit.edu 36 3 171463882 171463882 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002740 exon4 c.G335A p.R112H . . . SLC7A14 57709 broad.mit.edu 36 3 171699219 171699219 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020949 exon4 c.C690T p.I230I . . . EIF5A2 56648 broad.mit.edu 36 3 172094813 172094813 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020390 exon4 c.G364T p.E122X . . . PLD1 5337 broad.mit.edu 36 3 172862647 172862647 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130081 exon19 c.G2123A p.R708H . . . PLD1 5337 broad.mit.edu 36 3 172878090 172878090 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130081 exon16 c.C1842T p.F614F . . . PLD1 5337 broad.mit.edu 36 3 172914409 172914409 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130081 exon9 c.G879A p.T293T . . . TBL1XR1 79718 broad.mit.edu 36 3 178234753 178234753 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024665 exon13 c.G1177T p.E393X . . . PIK3CA 5290 broad.mit.edu 36 3 180399570 180399570 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006218 exon2 c.G263A p.R88Q PIK3CA,central_nervous_system,brain,Substitution - Missense,0 . . PIK3CA 5290 broad.mit.edu 36 3 180434768 180434768 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006218 exon21 c.G3129T p.M1043I PIK3CA,ovary,NS,Substitution - Missense,0 . . TTC14 151613 broad.mit.edu 36 3 181808143 181808143 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133462 exon10 c.G1186T p.E396X . . . CCDC39 339829 broad.mit.edu 36 3 181815491 181815491 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181426 exon20 c.C2738T p.A913V . . . CCDC39 339829 broad.mit.edu 36 3 181817421 181817421 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181426 exon17 c.G2293T p.E765X . . . CCDC39 339829 broad.mit.edu 36 3 181861123 181861123 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181426 exon4 c.G445A p.E149K . . . FXR1 8087 broad.mit.edu 36 3 182149718 182149718 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013438 exon7 c.G523T p.E175X . . . DCUN1D1 54165 broad.mit.edu 36 3 184166218 184166218 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020640 exon2 c.G21A p.S7S . . . MCF2L2 23101 broad.mit.edu 36 3 184430170 184430170 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015078 exon17 c.G2023T p.E675X . . . MCF2L2 23101 broad.mit.edu 36 3 184431453 184431453 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015078 exon16 c.G1909T p.E637X . . . B3GNT5 84002 broad.mit.edu 36 3 184470845 184470845 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032047 exon2 c.C565A p.L189I . . . MCF2L2 23101 broad.mit.edu 36 3 184511408 184511408 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015078 exon9 c.G982A p.D328N . . . ABCC5 10057 broad.mit.edu 36 3 185160224 185160224 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005688 exon17 c.C2473T p.P825S . . . ECE2 9718 broad.mit.edu 36 3 185485482 185485482 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014693 exon9 c.C1397T p.S466F . . . PSMD2 5708 broad.mit.edu 36 3 185504516 185504516 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002808 exon11 c.C1411A p.L471I . . . EPHB3 2049 broad.mit.edu 36 3 185778209 185778209 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004443 exon7 c.G1549A p.A517T . . . VPS8 23355 broad.mit.edu 36 3 186035137 186035137 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009921 exon5 c.G360T p.K120N . . . VPS8 23355 broad.mit.edu 36 3 186054598 186054598 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009921 exon12 c.A978G p.I326M . . . VPS8 23355 broad.mit.edu 36 3 186165000 186165000 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009921 exon37 c.G3234T p.K1078N . . . MAP3K13 9175 broad.mit.edu 36 3 186677863 186677863 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004721 exon12 c.T2486G p.F829C . . . IGF2BP2 10644 broad.mit.edu 36 3 186847540 186847540 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006548 exon15 c.C1674T p.I558I . . . TRA2B 6434 broad.mit.edu 36 3 187126063 187126063 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004593 exon3 c.G216A p.R72R . . . ETV5 2119 broad.mit.edu 36 3 187257674 187257674 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004454 exon11 c.C1093T p.R365X . . . TBCCD1 55171 broad.mit.edu 36 3 187751729 187751729 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134415 exon7 c.G1578T p.E526D . . . HRG 3273 broad.mit.edu 36 3 187877668 187877668 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000412 exon7 c.G880A p.E294K . . . HRG 3273 broad.mit.edu 36 3 187877851 187877851 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000412 exon7 c.C1063A p.H355N . . . HRG 3273 broad.mit.edu 36 3 187878184 187878184 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000412 exon7 c.A1396C p.K466Q . . . KNG1 3827 broad.mit.edu 36 3 187942275 187942275 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102416 exon10 c.G1396A p.E466K . . . ADIPOQ 9370 broad.mit.edu 36 3 188054667 188054667 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004797 exon3 c.G215A p.G72D . . . ST6GAL1 6480 broad.mit.edu 36 3 188274667 188274667 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173216 exon7 c.C831A p.F277L . . . BCL6 604 broad.mit.edu 36 3 188930314 188930314 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130845 exon5 c.G573A p.P191P . . . LEPREL1 55214 broad.mit.edu 36 3 191194700 191194700 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134418 exon3 c.G157A p.E53K . . . ATP13A5 344905 broad.mit.edu 36 3 194512333 194512333 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198505 exon20 c.T2411C p.V804A . . . ATP13A5 344905 broad.mit.edu 36 3 194514581 194514581 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198505 exon19 c.G2254T p.E752X . . . CPN2 1370 broad.mit.edu 36 3 195544962 195544962 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080513 exon2 c.C165A p.I55I . . . LRRC15 131578 broad.mit.edu 36 3 195561764 195561764 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130830 exon2 c.G1304A p.R435H . . . LRRC33 375387 broad.mit.edu 36 3 197872299 197872299 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198565 exon3 c.C1388A p.S463Y . . . IQCG 84223 broad.mit.edu 36 3 199143520 199143520 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032263 exon6 c.C566T p.S189L . . . EFHB 151651 broad.mit.edu 36 3 19950030 19950030 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144715 exon1 c.C485A p.A162D . . . KAT2B 8850 broad.mit.edu 36 3 20131436 20131436 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003884 exon7 c.G1102A p.D368N . . . KAT2B 8850 broad.mit.edu 36 3 20156828 20156828 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003884 exon13 c.G1972A p.E658K . . . KAT2B 8850 broad.mit.edu 36 3 20162852 20162852 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003884 exon14 c.G2045A p.R682Q . . . NR1D2 9975 broad.mit.edu 36 3 23984326 23984326 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005126 exon7 c.G1351A p.A451T . . . OXSM 54995 broad.mit.edu 36 3 25808267 25808267 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017897 exon2 c.C752T p.A251V . . . CNTN4 152330 broad.mit.edu 36 3 2883482 2883482 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175607 exon7 c.T501G p.D167E . . . CRBN 51185 broad.mit.edu 36 3 3172946 3172946 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173482 exon6 c.A704C p.N235T . . . GLB1 2720 broad.mit.edu 36 3 33074695 33074695 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000404 exon6 c.G623A p.R208H . . . PDCD6IP 10015 broad.mit.edu 36 3 33854768 33854768 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162429 exon9 c.G1141A p.D381N . . . CHL1 10752 broad.mit.edu 36 3 361349 361349 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006614 exon9 c.C805A p.L269I . . . STAC 6769 broad.mit.edu 36 3 36522297 36522297 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003149 exon8 c.T887G p.F296C . . . LRRFIP2 9209 broad.mit.edu 36 3 37125136 37125136 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006309 exon13 c.G653A p.R218Q . . . GOLGA4 2803 broad.mit.edu 36 3 37342989 37342989 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172713 exon15 c.G4674T p.Q1558H . . . ITGA9 3680 broad.mit.edu 36 3 37767017 37767017 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002207 exon23 c.C2494T p.R832X . . . SLC22A13 9390 broad.mit.edu 36 3 38290789 38290789 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004256 exon2 c.A401C p.K134T . . . SCN5A 6331 broad.mit.edu 36 3 38572996 38572996 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099405 exon24 c.C4323A p.F1441L . . . SCN5A 6331 broad.mit.edu 36 3 38576785 38576785 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099405 exon23 c.G4102A p.E1368K . . . SCN5A 6331 broad.mit.edu 36 3 38591875 38591875 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099405 exon20 c.C3583T p.R1195C . . . SCN5A 6331 broad.mit.edu 36 3 38597447 38597447 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099405 exon17 c.G3207A p.T1069T . . . SCN10A 6336 broad.mit.edu 36 3 38714128 38714128 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006514 exon27 c.C5587T p.R1863W . . . SCN10A 6336 broad.mit.edu 36 3 38714979 38714979 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006514 exon27 c.G4736A p.R1579Q . . . SCN11A 11280 broad.mit.edu 36 3 38867014 38867014 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014139 exon25 c.A4289C p.N1430T . . . SCN11A 11280 broad.mit.edu 36 3 38888065 38888065 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014139 exon21 c.G3634T p.D1212Y . . . TTC21A 199223 broad.mit.edu 36 3 39134656 39134656 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145755 exon7 c.C809A p.S270Y . . . CSRNP1 64651 broad.mit.edu 36 3 39159952 39159952 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033027 exon5 c.G1368T p.E456D . . . CX3CR1 1524 broad.mit.edu 36 3 39282555 39282555 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171174 exon2 c.C546T p.S182S . . . ENTPD3 956 broad.mit.edu 36 3 40439609 40439609 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001248 exon8 c.C1096T p.P366S . . . CHL1 10752 broad.mit.edu 36 3 415023 415023 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006614 exon25 c.G3208A p.D1070N . . . CHL1 10752 broad.mit.edu 36 3 418314 418314 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006614 exon27 c.G3391A p.E1131K . . . SETMAR 6419 broad.mit.edu 36 3 4333834 4333834 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006515 exon3 c.C1959T p.V653V . . . C3orf23 285343 broad.mit.edu 36 3 44412975 44412975 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173826 exon7 c.A775G p.T259A . . . ZNF197 10168 broad.mit.edu 36 3 44659355 44659355 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006991 exon6 c.C1729T p.R577X . . . ZNF501 115560 broad.mit.edu 36 3 44751194 44751194 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145044 exon3 c.C277T p.L93F . . . TGM4 7047 broad.mit.edu 36 3 44910105 44910105 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003241 exon5 c.C463T p.R155C . . . FYCO1 79443 broad.mit.edu 36 3 45938316 45938316 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024513 exon18 c.T4382G p.F1461C . . . LTF 4057 broad.mit.edu 36 3 46476212 46476212 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199149 exon2 c.C13T p.R5C . . . ALS2CL 259173 broad.mit.edu 36 3 46698050 46698050 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190707 exon12 c.C1218T p.F406F . . . KIF9 64147 broad.mit.edu 36 3 47252623 47252623 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182902 exon19 c.G2122T p.E708X . . . QARS 5859 broad.mit.edu 36 3 49108511 49108511 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005051 exon24 c.C2283A p.V761V . . . DAG1 1605 broad.mit.edu 36 3 49523250 49523250 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004393 exon2 c.C279A p.I93I . . . RNF123 63891 broad.mit.edu 36 3 49712664 49712664 + Missense_Mutation SNP C T T rs34379671 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022064 exon13 c.C985T p.R329C . . . IP6K1 9807 broad.mit.edu 36 3 49750727 49750727 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153273 exon3 c.G356A p.R119H . . . DOCK3 1795 broad.mit.edu 36 3 51226619 51226619 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004947 exon14 c.C1112T p.S371L . . . ALAS1 211 broad.mit.edu 36 3 52212995 52212995 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000688 exon5 c.G504T p.K168N . . . DNAH1 25981 broad.mit.edu 36 3 52382064 52382064 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015512 exon44 c.C6940T p.R2314C . . . DNAH1 25981 broad.mit.edu 36 3 52392443 52392443 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015512 exon51 c.T7943C p.I2648T . . . NISCH 11188 broad.mit.edu 36 3 52496723 52496723 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007184 exon16 c.C2175T p.F725F . . . STAB1 23166 broad.mit.edu 36 3 52510285 52510285 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015136 exon2 c.G142A p.A48T . . . PBRM1 55193 broad.mit.edu 36 3 52618474 52618474 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018313 exon17 c.C2462A p.T821K . . . PBRM1 55193 broad.mit.edu 36 3 52667326 52667326 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018313 exon6 c.G574A p.A192T . . . ITIH3 3699 broad.mit.edu 36 3 52814871 52814871 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002217 exon16 c.G1881T p.P627P . . . TKT 7086 broad.mit.edu 36 3 53249318 53249318 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135055 exon4 c.C426T p.F142F . . . DCP1A 55802 broad.mit.edu 36 3 53351289 53351289 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018403 exon3 c.C226T p.H76Y . . . CACNA2D3 55799 broad.mit.edu 36 3 54889864 54889864 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018398 exon21 c.T1846G p.L616V . . . ERC2 26059 broad.mit.edu 36 3 56443481 56443481 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015576 exon2 c.G595T p.E199X . . . ARHGEF3 50650 broad.mit.edu 36 3 56738490 56738490 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128615 exon13 c.C1525A p.L509I . . . ARHGEF3 50650 broad.mit.edu 36 3 56746261 56746261 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128615 exon11 c.C1129T p.R377W . . . FAM116A 201627 broad.mit.edu 36 3 57591227 57591227 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152678 exon18 c.A1581C p.Q527H . . . ABHD6 57406 broad.mit.edu 36 3 58231727 58231727 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020676 exon5 c.A419C p.K140T . . . RPP14 11102 broad.mit.edu 36 3 58278219 58278219 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098783 exon6 c.C331A p.L111I . . . PTPRG 5793 broad.mit.edu 36 3 62228463 62228463 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002841 exon19 c.T2803G p.F935V . . . PSMD6 9861 broad.mit.edu 36 3 63979545 63979545 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014814 exon4 c.C706T p.L236F . . . PRICKLE2 166336 broad.mit.edu 36 3 64117976 64117976 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198859 exon5 c.C502T p.L168F . . . ADAMTS9 56999 broad.mit.edu 36 3 64557559 64557559 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182920 exon27 c.G4166A p.G1389D . . . SUCLG2 8801 broad.mit.edu 36 3 67662230 67662230 + Silent SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177599 exon3 c.T297G p.G99G . . . TMF1 7110 broad.mit.edu 36 3 69155976 69155976 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007114 exon16 c.G3058A p.E1020K . . . ARL6IP5 10550 broad.mit.edu 36 3 69217050 69217050 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006407 exon1 c.G162A p.M54I . . . CNTN3 5067 broad.mit.edu 36 3 74493763 74493763 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020872 exon10 c.G1332T p.K444N . . . CNTN3 5067 broad.mit.edu 36 3 74497424 74497424 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020872 exon8 c.G1066T p.A356S . . . GBE1 2632 broad.mit.edu 36 3 81802776 81802776 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000158 exon3 c.C332T p.S111L . . . LMCD1 29995 broad.mit.edu 36 3 8582210 8582210 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014583 exon5 c.C816A p.C272X . . . VGLL3 389136 broad.mit.edu 36 3 87100651 87100651 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016206 exon3 c.G716A p.R239H . . . PROS1 5627 broad.mit.edu 36 3 95080797 95080797 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000313 exon13 c.G1544A p.R515H . . . OGG1 4968 broad.mit.edu 36 3 9768494 9768494 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016828 exon3 c.C426A p.F142L . . . PRRT3 285368 broad.mit.edu 36 3 9966667 9966667 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207351 exon2 c.G133T p.A45S . . . ADH7 131 broad.mit.edu 36 4 100568010 100568010 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000673 exon5 c.C543A p.V181V . . . MTTP 4547 broad.mit.edu 36 4 100731421 100731421 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000253 exon6 c.A508G p.I170V . . . MTTP 4547 broad.mit.edu 36 4 100762962 100762962 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000253 exon19 c.G2619T p.E873D . . . EMCN 51705 broad.mit.edu 36 4 101563574 101563574 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159694 exon5 c.A387G p.L129L . . . BANK1 55024 broad.mit.edu 36 4 102970106 102970106 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017935 exon2 c.G189T p.E63D . . . BANK1 55024 broad.mit.edu 36 4 103058233 103058233 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017935 exon7 c.A1070G p.N357S . . . CENPE 1062 broad.mit.edu 36 4 104251490 104251490 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001813 exon47 c.T7668G p.I2556M . . . CENPE 1062 broad.mit.edu 36 4 104299861 104299861 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001813 exon22 c.C2356A p.H786N . . . CENPE 1062 broad.mit.edu 36 4 104317569 104317569 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001813 exon14 c.A1326G p.I442M . . . TET2 54790 broad.mit.edu 36 4 106377414 106377414 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017628 exon3 c.C2866A p.L956I . . . CFI 3426 broad.mit.edu 36 4 110881698 110881698 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000204 exon13 c.A1552C p.I518L . . . LRIT3 345193 broad.mit.edu 36 4 111010703 111010703 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198506 exon3 c.G1214T p.R405I . . . ENPEP 2028 broad.mit.edu 36 4 111690448 111690448 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001977 exon17 c.C2458A p.L820M . . . AP1AR 55435 broad.mit.edu 36 4 113408907 113408907 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018569 exon10 c.G802A p.E268K . . . ALPK1 80216 broad.mit.edu 36 4 113573022 113573022 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025144 exon11 c.C2870A p.S957Y . . . C4orf21 55345 broad.mit.edu 36 4 113758402 113758402 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018392 exon6 c.G2245T p.E749X . . . ANK2 287 broad.mit.edu 36 4 114499208 114499208 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001148 exon38 c.T9985G p.F3329V . . . ARSJ 79642 broad.mit.edu 36 4 115044156 115044156 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024590 exon2 c.G523A p.G175R . . . UGT8 7368 broad.mit.edu 36 4 115806306 115806306 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128174 exon4 c.G987T p.K329N . . . NDST3 9348 broad.mit.edu 36 4 119194648 119194648 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004784 exon2 c.G135T p.E45D . . . NDST3 9348 broad.mit.edu 36 4 119284258 119284258 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004784 exon6 c.G1510T p.E504X . . . USP53 54532 broad.mit.edu 36 4 120431779 120431779 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019050 exon17 c.G2263T p.E755X . . . FABP2 2169 broad.mit.edu 36 4 120461383 120461383 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000134 exon2 c.G130T p.E44X . . . IL2 3558 broad.mit.edu 36 4 123594422 123594422 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000586 exon3 c.G244A p.E82K . . . SPATA5 166378 broad.mit.edu 36 4 124078811 124078811 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145207 exon8 c.G1415T p.R472I . . . ANKRD50 57182 broad.mit.edu 36 4 125811673 125811673 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167882 exon3 c.C1672T p.R558X . . . ANKRD50 57182 broad.mit.edu 36 4 125812912 125812912 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167882 exon3 c.C433T p.R145C . . . FAT4 79633 broad.mit.edu 36 4 126458624 126458624 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon1 c.C1608A p.S536S . . . FAT4 79633 broad.mit.edu 36 4 126461616 126461616 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon1 c.G4600A p.A1534T . . . FAT4 79633 broad.mit.edu 36 4 126461940 126461940 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon1 c.G4924A p.E1642K . . . FAT4 79633 broad.mit.edu 36 4 126555570 126555570 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon5 c.A6002G p.K2001R . . . FAT4 79633 broad.mit.edu 36 4 126591646 126591646 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon9 c.G10025A p.R3342Q . . . FAT4 79633 broad.mit.edu 36 4 126592790 126592790 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon9 c.G11169A p.K3723K . . . SLC25A31 83447 broad.mit.edu 36 4 128914152 128914152 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031291 exon6 c.C921T p.F307F . . . ELF2 1998 broad.mit.edu 36 4 140200085 140200085 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006874 exon7 c.G1104A p.A368A . . . NAA15 80155 broad.mit.edu 36 4 140525515 140525515 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057175 exon18 c.G2235A p.T745T . . . MAML3 55534 broad.mit.edu 36 4 140860359 140860359 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018717 exon6 c.G2973A p.P991P . . . RNF150 57484 broad.mit.edu 36 4 142108339 142108339 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020724 exon2 c.C623T p.S208L . . . INPP4B 8821 broad.mit.edu 36 4 143222727 143222727 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003866 exon26 c.C2549T p.S850L . . . ZNF718 255403 broad.mit.edu 36 4 145801 145801 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039127 exon4 c.G1326T p.K442N . . . ZNF827 152485 broad.mit.edu 36 4 146920061 146920061 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178835 exon9 c.C2436A p.F812L . . . SLC10A7 84068 broad.mit.edu 36 4 147434691 147434691 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029998 exon8 c.C562T p.R188X . . . EDNRA 1909 broad.mit.edu 36 4 148660501 148660501 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001957 exon3 c.C469A p.L157I . . . TMEM184C 55751 broad.mit.edu 36 4 148773560 148773560 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018241 exon8 c.C836T p.T279M . . . NR3C2 4306 broad.mit.edu 36 4 149293114 149293114 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166104 exon5 c.G2115A p.T705T . . . LRBA 987 broad.mit.edu 36 4 151993524 151993524 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006726 exon23 c.G2788T p.E930X . . . KIAA0922 23240 broad.mit.edu 36 4 154743963 154743963 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015196 exon24 c.G2695A p.E899K . . . DCHS2 54798 broad.mit.edu 36 4 155375502 155375502 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017639 exon25 c.T8387G p.F2796C . . . DCHS2 54798 broad.mit.edu 36 4 155376623 155376623 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017639 exon25 c.G7266T p.E2422D . . . DCHS2 54798 broad.mit.edu 36 4 155376864 155376864 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017639 exon25 c.A7025G p.D2342G . . . DCHS2 54798 broad.mit.edu 36 4 155381150 155381150 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017639 exon23 c.G5983T p.D1995Y . . . DCHS2 54798 broad.mit.edu 36 4 155438679 155438679 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017639 exon18 c.G4872T p.E1624D . . . DCHS2 54798 broad.mit.edu 36 4 155439147 155439147 + Silent SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017639 exon18 c.T4404G p.V1468V . . . FGA 2243 broad.mit.edu 36 4 155727266 155727266 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021871 exon5 c.G765A p.P255P . . . FGG 2266 broad.mit.edu 36 4 155750714 155750714 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021870 exon5 c.G487A p.E163K . . . RBM46 166863 broad.mit.edu 36 4 155938617 155938617 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144979 exon3 c.G356T p.R119I . . . MAP9 79884 broad.mit.edu 36 4 156513790 156513790 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039580 exon4 c.A429C p.K143N . . . GUCY1A3 2982 broad.mit.edu 36 4 156837665 156837665 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130682 exon3 c.C196T p.R66W . . . GUCY1B3 2983 broad.mit.edu 36 4 156937097 156937097 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000857 exon8 c.T962C p.F321S . . . GRIA2 2891 broad.mit.edu 36 4 158453367 158453367 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083620 exon4 c.G415T p.D139Y . . . GRIA2 2891 broad.mit.edu 36 4 158503523 158503523 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083620 exon15 c.G2388A p.A796A . . . FAM198B 51313 broad.mit.edu 36 4 159296315 159296315 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128424 exon3 c.G1023T p.Q341H . . . RAPGEF2 9693 broad.mit.edu 36 4 160490771 160490771 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014247 exon20 c.C3262A p.L1088I . . . FSTL5 56884 broad.mit.edu 36 4 162526397 162526397 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020116 exon16 c.C2496A p.I832I . . . ANP32C 23520 broad.mit.edu 36 4 165338187 165338187 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012403 exon1 c.G127T p.E43X . . . TRIM60 166655 broad.mit.edu 36 4 166181672 166181672 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152620 exon3 c.T998G p.F333C . . . DDX60 55601 broad.mit.edu 36 4 169433192 169433192 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017631 exon16 c.A2183C p.K728T . . . NEK1 4750 broad.mit.edu 36 4 170558271 170558271 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199400 exon31 c.C3474A p.F1158L . . . CLCN3 1182 broad.mit.edu 36 4 170855125 170855125 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001829 exon9 c.G1228A p.A410T . . . CLCN3 1182 broad.mit.edu 36 4 170877778 170877778 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173872 exon14 c.G2588T p.S863I . . . LAP3 51056 broad.mit.edu 36 4 17218163 17218163 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015907 exon13 c.C1413T p.F471F . . . GALNTL6 442117 broad.mit.edu 36 4 173469468 173469468 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001034845 exon4 c.C376T p.R126C . . . GLRA3 8001 broad.mit.edu 36 4 175834918 175834918 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042543 exon7 c.C813A p.S271S . . . ADAM29 11086 broad.mit.edu 36 4 176133786 176133786 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001130705 exon3 c.G535T p.E179X . . . WDR17 116966 broad.mit.edu 36 4 177283447 177283447 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181265 exon5 c.C737A p.S246Y . . . SPATA4 132851 broad.mit.edu 36 4 177350905 177350905 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144644 exon4 c.G555A p.S185S . . . ASB5 140458 broad.mit.edu 36 4 177379339 177379339 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080874 exon5 c.T631C p.S211P . . . ASB5 140458 broad.mit.edu 36 4 177379727 177379727 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080874 exon4 c.G403T p.D135Y . . . ASB5 140458 broad.mit.edu 36 4 177383472 177383472 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080874 exon2 c.C211T p.R71X . . . ODZ3 55714 broad.mit.edu 36 4 183786926 183786926 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080477 exon4 c.G878T p.R293I . . . ODZ3 55714 broad.mit.edu 36 4 183838832 183838832 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080477 exon9 c.C1782A p.I594I . . . ODZ3 55714 broad.mit.edu 36 4 183840082 183840082 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080477 exon10 c.C1956A p.C652X . . . ODZ3 55714 broad.mit.edu 36 4 183912538 183912538 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080477 exon21 c.C4024A p.L1342M . . . C4orf41 60684 broad.mit.edu 36 4 184837514 184837514 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_199053 exon9 c.T846C p.C282C . . . C4orf41 60684 broad.mit.edu 36 4 184843491 184843491 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199053 exon17 c.G1703A p.R568Q . . . STOX2 56977 broad.mit.edu 36 4 185167799 185167799 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020225 exon3 c.C814A p.R272R . . . CASP3 836 broad.mit.edu 36 4 185790516 185790516 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032991 exon4 c.C207T p.V69V . . . ACSL1 2180 broad.mit.edu 36 4 185942132 185942132 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001995 exon4 c.C318T p.G106G . . . SLC25A4 291 broad.mit.edu 36 4 186305071 186305071 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001151 exon4 c.C849T p.G283G . . . LRP2BP 55805 broad.mit.edu 36 4 186532347 186532347 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018409 exon5 c.G515T p.S172I . . . LRP2BP 55805 broad.mit.edu 36 4 186532579 186532579 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018409 exon4 c.C361T p.L121F . . . CCDC110 256309 broad.mit.edu 36 4 186616814 186616814 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152775 exon6 c.A1921C p.K641Q . . . TLR3 7098 broad.mit.edu 36 4 187240850 187240850 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003265 exon4 c.C1016A p.S339Y . . . FAT1 2195 broad.mit.edu 36 4 187771314 187771314 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005245 exon13 c.G9406T p.E3136X . . . TRIML1 339976 broad.mit.edu 36 4 189297938 189297938 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178556 exon1 c.G232A p.A78T . . . KCNIP4 80333 broad.mit.edu 36 4 20914545 20914545 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147183 exon1 c.T83A p.I28N . . . POLN 353497 broad.mit.edu 36 4 2184627 2184627 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181808 exon2 c.G158T p.S53I . . . SEPSECS 51091 broad.mit.edu 36 4 24755802 24755802 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016955 exon7 c.T856G p.F286V . . . ZCCHC4 29063 broad.mit.edu 36 4 24926052 24926052 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024936 exon3 c.A261C p.R87S . . . STIM2 57620 broad.mit.edu 36 4 26613038 26613038 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001169117 exon6 c.G727T p.E243X . . . HTT 3064 broad.mit.edu 36 4 3191799 3191799 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002111 exon53 c.C7335A p.V2445V . . . ARAP2 116984 broad.mit.edu 36 4 35888614 35888614 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015230 exon6 c.G1280T p.R427I . . . TBC1D1 23216 broad.mit.edu 36 4 37696447 37696447 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015173 exon4 c.C960A p.S320S . . . TBC1D1 23216 broad.mit.edu 36 4 37705873 37705873 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015173 exon7 c.C1280T p.A427V . . . FAM114A1 92689 broad.mit.edu 36 4 38556428 38556428 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138389 exon3 c.G334A p.E112K . . . WDR19 57728 broad.mit.edu 36 4 38922562 38922562 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025132 exon23 c.G2640T p.K880N . . . RFC1 5981 broad.mit.edu 36 4 39029384 39029384 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002913 exon2 c.G111T p.K37N . . . PDS5A 23244 broad.mit.edu 36 4 39603872 39603872 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100399 exon5 c.G506T p.R169I . . . RHOH 399 broad.mit.edu 36 4 39921931 39921931 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004310 exon3 c.G530A p.R177Q . . . TMEM33 55161 broad.mit.edu 36 4 41632279 41632279 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018126 exon1 c.C21T p.N7N . . . ZNF721 170960 broad.mit.edu 36 4 426032 426032 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133474 exon3 c.G2224A p.E742K . . . ZNF721 170960 broad.mit.edu 36 4 426276 426276 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133474 exon3 c.G1980A p.T660T . . . GABRA2 2555 broad.mit.edu 36 4 46009295 46009295 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000807 exon5 c.G451T p.D151Y . . . GABRA4 2557 broad.mit.edu 36 4 46625285 46625285 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000809 exon9 c.G1379A p.R460Q . . . NFXL1 152518 broad.mit.edu 36 4 47551843 47551843 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152995 exon20 c.G2411T p.R804I . . . ZAR1 326340 broad.mit.edu 36 4 48189734 48189734 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175619 exon3 c.G1079T p.R360I . . . FRYL 285527 broad.mit.edu 36 4 48278226 48278226 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015030 exon21 c.C2140T p.R714W . . . FRYL 285527 broad.mit.edu 36 4 48292471 48292471 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015030 exon15 c.C1141T p.R381C . . . OCIAD1 54940 broad.mit.edu 36 4 48529401 48529401 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079840 exon2 c.G3T p.M1I . . . LRRC66 339977 broad.mit.edu 36 4 52556746 52556746 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024611 exon4 c.A1199G p.Y400C . . . SCFD2 152579 broad.mit.edu 36 4 53481723 53481723 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152540 exon6 c.C1633T p.R545W . . . KDR 3791 broad.mit.edu 36 4 55655780 55655780 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002253 exon21 c.G2917T p.A973S . . . CLOCK 9575 broad.mit.edu 36 4 55999212 55999212 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004898 exon22 c.T2355G p.F785L . . . CLOCK 9575 broad.mit.edu 36 4 56039751 56039751 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004898 exon6 c.C244T p.R82X . . . EXOC1 55763 broad.mit.edu 36 4 56460612 56460612 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024924 exon17 c.G2142T p.E714D . . . CEP135 9662 broad.mit.edu 36 4 56578758 56578758 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025009 exon22 c.C2990T p.S997L . . . AASDH 132949 broad.mit.edu 36 4 56910433 56910433 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181806 exon11 c.G2241A p.A747A . . . AASDH 132949 broad.mit.edu 36 4 56939072 56939072 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181806 exon4 c.C667T p.R223W . . . SRP72 6731 broad.mit.edu 36 4 57062660 57062660 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006947 exon19 c.C1892T p.A631V . . . EVC2 132884 broad.mit.edu 36 4 5746982 5746982 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166136 exon3 c.C191A p.S64Y . . . JAKMIP1 152789 broad.mit.edu 36 4 6131608 6131608 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144720 exon8 c.C1261T p.R421C . . . LPHN3 23284 broad.mit.edu 36 4 62441205 62441205 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015236 exon7 c.G1513T p.E505X . . . LPHN3 23284 broad.mit.edu 36 4 62592800 62592800 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015236 exon22 c.G3548A p.R1183Q . . . EPHA5 2044 broad.mit.edu 36 4 65914263 65914263 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004439 exon11 c.G2032T p.E678X . . . EPHA5 2044 broad.mit.edu 36 4 65968853 65968853 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004439 exon6 c.A1428C p.K476N . . . TMPRSS11B 132724 broad.mit.edu 36 4 68790075 68790075 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182502 exon2 c.G51A p.T17T . . . UGT2B17 7367 broad.mit.edu 36 4 69116443 69116443 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077 exon1 c.G355A p.E119K . . . UGT2A3 79799 broad.mit.edu 36 4 69830206 69830206 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024743 exon6 c.G1498A p.A500T . . . UGT2A3 79799 broad.mit.edu 36 4 69845632 69845632 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024743 exon2 c.C845A p.P282H . . . UGT2A3 79799 broad.mit.edu 36 4 69852003 69852003 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024743 exon1 c.T65G p.F22C . . . UGT2A1 10941 broad.mit.edu 36 4 70489929 70489929 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006798 exon6 c.G1334T p.R445I . . . SULT1E1 6783 broad.mit.edu 36 4 70755650 70755650 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005420 exon3 c.C229T p.R77X . . . ODAM 54959 broad.mit.edu 36 4 71097037 71097037 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017855 exon2 c.G91T p.E31X . . . RUFY3 22902 broad.mit.edu 36 4 71873513 71873513 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014961 exon11 c.G1198T p.D400Y . . . RUFY3 22902 broad.mit.edu 36 4 71878382 71878382 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037442 exon13 c.C1354T p.R452X . . . DCK 1633 broad.mit.edu 36 4 72111255 72111255 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000788 exon6 c.C675T p.F225F . . . SLC4A4 8671 broad.mit.edu 36 4 72535881 72535881 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134742 exon11 c.C1321T p.R441W . . . GC 2638 broad.mit.edu 36 4 72842647 72842647 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000583 exon7 c.C807A p.A269A . . . ADAMTS3 9508 broad.mit.edu 36 4 73398337 73398337 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014243 exon12 c.T1666C p.S556P . . . ADAMTS3 9508 broad.mit.edu 36 4 73499423 73499423 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014243 exon4 c.G634T p.D212Y . . . ANKRD17 26057 broad.mit.edu 36 4 74219739 74219739 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198889 exon15 c.G2440A p.A814T . . . AFP 174 broad.mit.edu 36 4 74522765 74522765 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134 exon3 c.T148G p.F50V . . . AFP 174 broad.mit.edu 36 4 74533945 74533945 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134 exon9 c.C1088T p.P363L . . . C4orf26 152816 broad.mit.edu 36 4 76708404 76708404 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178497 exon2 c.G124A p.D42N . . . ZNF595 152687 broad.mit.edu 36 4 76725 76725 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182524 exon4 c.G1330T p.E444X . . . SORCS2 57537 broad.mit.edu 36 4 7716985 7716985 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020777 exon7 c.C958T p.R320W . . . ART3 419 broad.mit.edu 36 4 77222241 77222241 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001179 exon3 c.G310A p.E104K . . . CCDC158 339965 broad.mit.edu 36 4 77524826 77524826 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042784 exon4 c.A305C p.E102A . . . SEPT11 55752 broad.mit.edu 36 4 78136694 78136694 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018243 exon2 c.C120A p.F40L . . . GK2 2712 broad.mit.edu 36 4 80547121 80547121 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033214 exon1 c.C1258T p.R420C . . . PRDM8 56978 broad.mit.edu 36 4 81341615 81341615 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099403 exon3 c.G367T p.D123Y . . . FGF5 2250 broad.mit.edu 36 4 81407232 81407232 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033143 exon1 c.G230T p.S77I . . . SH3TC1 54436 broad.mit.edu 36 4 8290194 8290194 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018986 exon17 c.A3650C p.K1217T . . . HNRNPD 3184 broad.mit.edu 36 4 83498929 83498929 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031370 exon4 c.A528C p.K176N . . . ACOX3 8310 broad.mit.edu 36 4 8447260 8447260 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003501 exon10 c.G1166A p.R389H . . . AFF1 4299 broad.mit.edu 36 4 88187757 88187757 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166693 exon4 c.C1046A p.S349Y . . . DSPP 1834 broad.mit.edu 36 4 88756350 88756350 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014208 exon5 c.G3512A p.S1171N . . . ABCG2 9429 broad.mit.edu 36 4 89280151 89280151 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004827 exon2 c.A21C p.E7D . . . FAM190A 401145 broad.mit.edu 36 4 91448857 91448857 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145065 exon2 c.G399T p.E133D . . . GRID2 2895 broad.mit.edu 36 4 94766556 94766556 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001510 exon14 c.A2307G p.G769G . . . GRID2 2895 broad.mit.edu 36 4 94909460 94909460 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001510 exon15 c.C2437A p.L813M . . . SMARCAD1 56916 broad.mit.edu 36 4 95418686 95418686 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128429 exon17 c.G2173T p.E725X . . . PDHA2 5161 broad.mit.edu 36 4 96980580 96980580 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005390 exon1 c.C256T p.R86C . . . PDHA2 5161 broad.mit.edu 36 4 96981450 96981450 + Missense_Mutation SNP C T T rs17024795 byCluster;byFrequency;byHapMap TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005390 exon1 c.C1126T p.R376C . . . C5orf38 153571 broad.mit.edu 36 5 2805755 2805756 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_178569 exon2 c.220_221insG p.W74fs . . . SLCO4C1 353189 broad.mit.edu 36 5 101625544 101625544 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_180991 exon5 c.C992T p.P331L . . . MARCH6 10299 broad.mit.edu 36 5 10455530 10455530 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005885 exon13 c.G1088A p.R363H . . . WDR36 134430 broad.mit.edu 36 5 110467429 110467429 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139281 exon7 c.G811T p.V271F . . . WDR36 134430 broad.mit.edu 36 5 110489208 110489208 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139281 exon22 c.A2522G p.D841G . . . CTNND2 1501 broad.mit.edu 36 5 11076080 11076080 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001332 exon17 c.A2800G p.M934V . . . EPB41L4A 64097 broad.mit.edu 36 5 111604400 111604400 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022140 exon10 c.G802A p.E268K . . . APC 324 broad.mit.edu 36 5 112202530 112202530 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127511 exon14 c.C3286T p.R1096X APC,large_intestine,colon,Substitution - Nonsense,0 . . APC 324 broad.mit.edu 36 5 112203115 112203115 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127511 exon14 c.G3871T p.E1291X APC,upper_aerodigestive_tract,sinonasal_and_nasal_cavity,Substitution - Missense,0 . . APC 324 broad.mit.edu 36 5 112205276 112205276 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127511 exon14 c.C6032A p.S2011Y . . . SRP19 6728 broad.mit.edu 36 5 112231058 112231058 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003135 exon5 c.A360C p.Q120H . . . MCC 4163 broad.mit.edu 36 5 112467829 112467829 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085377 exon7 c.C1150A p.Q384K . . . YTHDC2 64848 broad.mit.edu 36 5 112917218 112917218 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022828 exon14 c.G1900A p.E634K . . . CTNND2 1501 broad.mit.edu 36 5 11399720 11399720 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001332 exon9 c.C1392T p.V464V . . . TRIM36 55521 broad.mit.edu 36 5 114527128 114527128 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018700 exon2 c.G284A p.R95Q . . . CCDC112 153733 broad.mit.edu 36 5 114634965 114634965 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040440 exon7 c.G1176A p.Q392Q . . . DMXL1 1657 broad.mit.edu 36 5 118530299 118530299 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005509 exon22 c.C5060A p.S1687Y . . . HSD17B4 3295 broad.mit.edu 36 5 118893503 118893503 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000414 exon21 c.G1783T p.D595Y . . . FAM170A 340069 broad.mit.edu 36 5 118997635 118997635 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182761 exon3 c.G293A p.R98H . . . FBN2 2201 broad.mit.edu 36 5 127682513 127682513 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001999 exon35 c.C4551T p.C1517C . . . FBN2 2201 broad.mit.edu 36 5 127894276 127894276 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001999 exon3 c.G347T p.R116I . . . CHSY3 337876 broad.mit.edu 36 5 129548591 129548591 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175856 exon3 c.G1857T p.K619N . . . CHSY3 337876 broad.mit.edu 36 5 129548829 129548829 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175856 exon3 c.C2095T p.L699F . . . TERT 7015 broad.mit.edu 36 5 1307511 1307511 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198253 exon15 c.C3267T p.Y1089Y . . . RAD50 10111 broad.mit.edu 36 5 131943086 131943086 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005732 exon4 c.G544A p.A182T . . . GDF9 2661 broad.mit.edu 36 5 132225369 132225369 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005260 exon2 c.T1176C p.H392H . . . VDAC1 7416 broad.mit.edu 36 5 133339505 133339505 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003374 exon7 c.G658A p.G220R . . . UBE2B 7320 broad.mit.edu 36 5 133744329 133744329 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003337 exon4 c.G172T p.E58X . . . SLC25A48 153328 broad.mit.edu 36 5 135216225 135216225 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145282 exon4 c.C237A p.V79V . . . FBXL21 26223 broad.mit.edu 36 5 135300409 135300409 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012159 exon5 c.T227G p.F76C . . . KLHL3 26249 broad.mit.edu 36 5 136997654 136997654 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017415 exon12 c.C1421T p.A474V . . . MYOT 9499 broad.mit.edu 36 5 137246994 137246994 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006790 exon7 c.A839T p.D280V . . . KDM3B 51780 broad.mit.edu 36 5 137755624 137755624 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016604 exon8 c.C2404T p.R802X . . . KDM3B 51780 broad.mit.edu 36 5 137781148 137781148 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016604 exon13 c.C3385T p.R1129X . . . EGR1 1958 broad.mit.edu 36 5 137831663 137831663 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001964 exon2 c.T1626C p.I542I . . . DNAH5 1767 broad.mit.edu 36 5 13805340 13805340 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon64 c.G10931A p.G3644E . . . DNAH5 1767 broad.mit.edu 36 5 13823874 13823874 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon56 c.C9589T p.R3197W . . . MATR3 9782 broad.mit.edu 36 5 138671789 138671789 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001194955 exon2 c.G786T p.E262D . . . DNAH5 1767 broad.mit.edu 36 5 13876440 13876440 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon40 c.G6619T p.D2207Y . . . DNAH5 1767 broad.mit.edu 36 5 13898101 13898101 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon32 c.T5116C p.Y1706H . . . DNAH5 1767 broad.mit.edu 36 5 13972297 13972297 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon7 c.G963A p.S321S . . . DNAH5 1767 broad.mit.edu 36 5 13984251 13984251 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon2 c.G160A p.E54K . . . ANKHD1-EIF4EBP3 404734 broad.mit.edu 36 5 139888450 139888450 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017747 exon29 c.G5735A p.R1912H . . . PCDHA3 56145 broad.mit.edu 36 5 140161675 140161675 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031497 exon1 c.G709A p.D237N . . . PCDHA3 56145 broad.mit.edu 36 5 140162098 140162098 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031497 exon1 c.G1132A p.D378N . . . PCDHA7 56141 broad.mit.edu 36 5 140196277 140196277 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018910 exon1 c.A2125G p.S709G . . . PCDHAC1 56135 broad.mit.edu 36 5 140288161 140288161 + Silent SNP G A A rs17844366 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031882 exon1 c.G1500A p.V500V . . . PCDHAC2 56134 broad.mit.edu 36 5 140326984 140326984 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018899 exon1 c.G449A p.R150Q . . . PCDHB1 29930 broad.mit.edu 36 5 140411662 140411662 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013340 exon1 c.G423T p.K141N . . . PCDHB2 56133 broad.mit.edu 36 5 140456626 140456626 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018936 exon1 c.G2068A p.V690I . . . PCDHB4 56131 broad.mit.edu 36 5 140482446 140482446 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018938 exon1 c.C682T p.R228X . . . PCDHB8 56128 broad.mit.edu 36 5 140538502 140538502 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019120 exon1 c.G703A p.D235N . . . PCDHB8 56128 broad.mit.edu 36 5 140538675 140538675 + Silent SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019120 exon1 c.T876G p.T292T . . . PCDHB10 56126 broad.mit.edu 36 5 140553953 140553953 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018930 exon1 c.C1644T p.R548R . . . PCDHB14 56122 broad.mit.edu 36 5 140585323 140585323 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018934 exon1 c.G2062A p.V688I . . . PCDHGA1 56114 broad.mit.edu 36 5 140692688 140692688 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031993 exon1 c.G2253T p.Q751H . . . PCDHGA3 56112 broad.mit.edu 36 5 140705021 140705021 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018916 exon1 c.G1237A p.E413K . . . PCDHGA5 56110 broad.mit.edu 36 5 140725820 140725820 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032054 exon1 c.G1739A p.R580H . . . PCDHGB5 56101 broad.mit.edu 36 5 140759031 140759031 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032099 exon1 c.G1153A p.E385K . . . PCDHGB7 56099 broad.mit.edu 36 5 140779115 140779115 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032101 exon1 c.C1505T p.S502L . . . PCDHGB7 56099 broad.mit.edu 36 5 140779603 140779603 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032101 exon1 c.G1993A p.A665T . . . PCDHGC4 56098 broad.mit.edu 36 5 140845990 140845990 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032406 exon1 c.C1066T p.L356F . . . DIAPH1 1729 broad.mit.edu 36 5 140937244 140937244 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005219 exon12 c.G1262A p.R421Q . . . TCERG1 10915 broad.mit.edu 36 5 145839798 145839798 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040006 exon11 c.G1771T p.E591X . . . TCERG1 10915 broad.mit.edu 36 5 145863641 145863641 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040006 exon17 c.G2546A p.R849Q . . . PPP2R2B 5521 broad.mit.edu 36 5 146415455 146415455 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181676 exon1 c.G45A p.P15P . . . DPYSL3 1809 broad.mit.edu 36 5 146753836 146753836 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001387 exon14 c.C1668T p.I556I . . . ANKH 56172 broad.mit.edu 36 5 14766764 14766764 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054027 exon10 c.C1154T p.A385V . . . CSF1R 1436 broad.mit.edu 36 5 149417062 149417062 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005211 exon17 c.C2300T p.A767V . . . SLC6A7 6534 broad.mit.edu 36 5 149569361 149569361 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014228 exon14 c.C1901T p.S634L . . . NDST1 3340 broad.mit.edu 36 5 149911528 149911528 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001543 exon14 c.T2447G p.F816C . . . FAT2 2196 broad.mit.edu 36 5 150894366 150894366 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001447 exon12 c.G9224A p.R3075Q . . . FAT2 2196 broad.mit.edu 36 5 150904745 150904745 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001447 exon9 c.C6136T p.R2046W . . . SPARC 6678 broad.mit.edu 36 5 151026188 151026188 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003118 exon8 c.G661A p.E221K . . . G3BP1 10146 broad.mit.edu 36 5 151159686 151159686 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005754 exon9 c.G887T p.R296I . . . LPCAT1 79888 broad.mit.edu 36 5 1516862 1516862 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024830 exon14 c.G1509T p.E503D . . . GRIA1 2890 broad.mit.edu 36 5 153006889 153006889 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114183 exon3 c.G429T p.Q143H . . . MFAP3 4238 broad.mit.edu 36 5 153412910 153412910 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005927 exon3 c.G533A p.R178H . . . C5orf4 10826 broad.mit.edu 36 5 154190579 154190579 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032385 exon5 c.G341A p.R114Q . . . EBF1 1879 broad.mit.edu 36 5 158433018 158433018 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024007 exon6 c.G518A p.R173Q . . . ADRA1B 147 broad.mit.edu 36 5 159276650 159276650 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000679 exon1 c.G160A p.A54T . . . FBXL7 23194 broad.mit.edu 36 5 15981508 15981508 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012304 exon3 c.G637A p.E213K . . . GABRG2 2566 broad.mit.edu 36 5 161457406 161457406 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198904 exon4 c.G512T p.R171I . . . GABRG2 2566 broad.mit.edu 36 5 161508778 161508778 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198904 exon8 c.C1009A p.L337I . . . GABRG2 2566 broad.mit.edu 36 5 161511320 161511320 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198904 exon9 c.C1135T p.R379W . . . HMMR 3161 broad.mit.edu 36 5 162827292 162827292 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012484 exon4 c.C230A p.S77Y . . . FAM134B 54463 broad.mit.edu 36 5 16530807 16530807 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001034850 exon8 c.T964C p.S322P . . . ODZ2 57451 broad.mit.edu 36 5 167486429 167486429 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122679 exon12 c.C2302T p.R768C . . . ODZ2 57451 broad.mit.edu 36 5 167606759 167606759 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122679 exon27 c.C6210A p.F2070L . . . MYO10 4651 broad.mit.edu 36 5 16832680 16832680 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012334 exon9 c.G904T p.D302Y . . . CCDC99 54908 broad.mit.edu 36 5 168958639 168958639 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017785 exon10 c.C1222T p.R408X . . . DOCK2 1794 broad.mit.edu 36 5 169043903 169043903 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004946 exon8 c.C732A p.L244L . . . DOCK2 1794 broad.mit.edu 36 5 169059685 169059685 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004946 exon13 c.G1222A p.A408T . . . DOCK2 1794 broad.mit.edu 36 5 169061987 169061987 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004946 exon14 c.C1361T p.A454V . . . DOCK2 1794 broad.mit.edu 36 5 169106994 169106994 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004946 exon23 c.G2284T p.E762X . . . KCNIP1 30820 broad.mit.edu 36 5 170078450 170078450 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001034838 exon2 c.C199T p.R67X . . . KCNIP1 30820 broad.mit.edu 36 5 170093463 170093463 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001034838 exon7 c.C613A p.L205I . . . FBXW11 23291 broad.mit.edu 36 5 171259574 171259574 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033645 exon3 c.G407A p.R136Q . . . STK10 6793 broad.mit.edu 36 5 171516247 171516247 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005990 exon2 c.G307A p.D103N . . . HMP19 51617 broad.mit.edu 36 5 173423899 173423899 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015980 exon3 c.G188A p.R63Q . . . DRD1 1812 broad.mit.edu 36 5 174802257 174802257 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000794 exon2 c.C452A p.S151Y . . . HIGD2A 192286 broad.mit.edu 36 5 175749045 175749045 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138820 exon2 c.T262C p.F88L . . . HK3 3101 broad.mit.edu 36 5 176250336 176250336 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002115 exon6 c.G536A p.S179N . . . RMND5B 64777 broad.mit.edu 36 5 177503288 177503288 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022762 exon6 c.C481T p.R161X . . . ZNF354B 117608 broad.mit.edu 36 5 178243192 178243192 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058230 exon5 c.G1133A p.G378E . . . ZNF454 285676 broad.mit.edu 36 5 178306085 178306085 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182594 exon3 c.C153A p.V51V . . . ZNF454 285676 broad.mit.edu 36 5 178325306 178325306 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182594 exon5 c.G1295T p.R432I . . . GRM6 2916 broad.mit.edu 36 5 178346143 178346143 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000843 exon8 c.C1718A p.P573H . . . GRM6 2916 broad.mit.edu 36 5 178351113 178351113 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000843 exon3 c.G775T p.E259X . . . ZNF354C 30832 broad.mit.edu 36 5 178438379 178438379 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014594 exon5 c.T340C p.S114P . . . ADAMTS2 9509 broad.mit.edu 36 5 178540689 178540689 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021599 exon5 c.G965A p.S322N . . . RNF130 55819 broad.mit.edu 36 5 179400216 179400216 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018434 exon2 c.C285A p.F95L . . . FLT4 2324 broad.mit.edu 36 5 179968647 179968647 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182925 exon29 c.G3820T p.D1274Y . . . TRIM52 84851 broad.mit.edu 36 5 180619642 180619642 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032765 exon1 c.T779C p.V260A . . . TRIM52 84851 broad.mit.edu 36 5 180619892 180619892 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032765 exon1 c.C529A p.L177I . . . CDH18 1016 broad.mit.edu 36 5 19782938 19782938 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004934 exon4 c.T393C p.I131I . . . CDH12 1010 broad.mit.edu 36 5 21838077 21838077 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004061 exon10 c.C1212T p.G404G . . . CDH12 1010 broad.mit.edu 36 5 21852906 21852906 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004061 exon9 c.G907T p.E303X . . . CDH10 1008 broad.mit.edu 36 5 24523647 24523647 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006727 exon12 c.C2249A p.S750X . . . CDH10 1008 broad.mit.edu 36 5 24541077 24541077 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006727 exon8 c.T1294G p.F432V . . . CDH10 1008 broad.mit.edu 36 5 24545450 24545450 + Missense_Mutation SNP G T T rs1395027 byHapMap TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006727 exon7 c.C1238A p.S413Y . . . CDH10 1008 broad.mit.edu 36 5 24571625 24571625 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006727 exon4 c.G590A p.R197K . . . CDH10 1008 broad.mit.edu 36 5 24573525 24573525 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006727 exon3 c.G247T p.D83Y . . . CDH9 1007 broad.mit.edu 36 5 26921893 26921893 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016279 exon10 c.C1569A p.F523L . . . CDH9 1007 broad.mit.edu 36 5 27024044 27024044 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016279 exon2 c.A154G p.K52E . . . CDH6 1004 broad.mit.edu 36 5 31333159 31333159 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004932 exon4 c.T530G p.F177C . . . DROSHA 29102 broad.mit.edu 36 5 31508061 31508061 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013235 exon16 c.C2107A p.L703I . . . DROSHA 29102 broad.mit.edu 36 5 31540470 31540470 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013235 exon10 c.C1617T p.S539S . . . PDZD2 23037 broad.mit.edu 36 5 32124365 32124365 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178140 exon19 c.C5054A p.S1685X . . . ZFR 51663 broad.mit.edu 36 5 32439095 32439095 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016107 exon8 c.G1389A p.T463T . . . SUB1 10923 broad.mit.edu 36 5 32627473 32627473 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006713 exon3 c.A120T p.Q40H . . . RXFP3 51289 broad.mit.edu 36 5 33973073 33973073 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016568 exon1 c.C471T p.I157I . . . RAI14 26064 broad.mit.edu 36 5 34860119 34860119 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145522 exon14 c.G2328A p.S776S . . . AGXT2 64902 broad.mit.edu 36 5 35075362 35075362 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031900 exon3 c.C186A p.G62G . . . SPEF2 79925 broad.mit.edu 36 5 35741603 35741603 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024867 exon18 c.G2601T p.K867N . . . SPEF2 79925 broad.mit.edu 36 5 35829064 35829064 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024867 exon32 c.A4601G p.D1534G . . . UGT3A2 167127 broad.mit.edu 36 5 36084912 36084912 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168316 exon3 c.G577T p.E193X . . . UGT3A2 167127 broad.mit.edu 36 5 36084985 36084985 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168316 exon3 c.G504T p.K168N . . . IRX1 79192 broad.mit.edu 36 5 3652401 3652401 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024337 exon2 c.G339A p.T113T . . . IRX1 79192 broad.mit.edu 36 5 3652770 3652770 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024337 exon2 c.C708T p.H236H . . . NUP155 9631 broad.mit.edu 36 5 37361761 37361761 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153485 exon19 c.C2090T p.A697V . . . NUP155 9631 broad.mit.edu 36 5 37387148 37387148 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153485 exon6 c.T624C p.L208L . . . EGFLAM 133584 broad.mit.edu 36 5 38443730 38443730 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182798 exon4 c.C512A p.S171Y . . . EGFLAM 133584 broad.mit.edu 36 5 38460878 38460878 + De_novo_Start_OutOfFrame SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182798 exon8 c.C1035A p.T345T . . . LIFR 3977 broad.mit.edu 36 5 38539939 38539939 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127671 exon10 c.A1333C p.N445H . . . FYB 2533 broad.mit.edu 36 5 39238183 39238183 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199335 exon2 c.G637A p.E213K . . . C5orf51 285636 broad.mit.edu 36 5 41953113 41953113 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175921 exon6 c.G840A p.T280T . . . MGC42105 167359 broad.mit.edu 36 5 43316334 43316334 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153361 exon4 c.G1057T p.E353X . . . C5orf28 64417 broad.mit.edu 36 5 43482245 43482245 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022483 exon3 c.C484T p.R162C . . . C5orf55 116349 broad.mit.edu 36 5 495848 495848 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138464 exon1 c.G90A p.G30G . . . ADAMTS16 170690 broad.mit.edu 36 5 5244843 5244843 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_139056 exon8 c.C1253T p.T418M . . . ADAMTS16 170690 broad.mit.edu 36 5 5295285 5295285 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139056 exon17 c.C2643T p.C881C . . . ADAMTS16 170690 broad.mit.edu 36 5 5315868 5315868 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139056 exon18 c.C2761T p.P921S . . . DHX29 54505 broad.mit.edu 36 5 54602167 54602167 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019030 exon19 c.G2989T p.E997X . . . DHX29 54505 broad.mit.edu 36 5 54606273 54606273 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019030 exon16 c.C2616A p.I872I . . . DHX29 54505 broad.mit.edu 36 5 54606463 54606463 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019030 exon15 c.C2560A p.L854I . . . IL31RA 133396 broad.mit.edu 36 5 55246502 55246502 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139017 exon14 c.G1807A p.D603N . . . MIER3 166968 broad.mit.edu 36 5 56270493 56270493 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152622 exon4 c.G289T p.E97X . . . ACTBL2 345651 broad.mit.edu 36 5 56813266 56813266 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017992 exon1 c.T1026G p.I342M . . . PDE4D 5144 broad.mit.edu 36 5 58516820 58516820 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001197219 exon4 c.G344A p.R115Q . . . IPO11 51194 broad.mit.edu 36 5 61825694 61825694 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134779 exon16 c.G1696T p.D566Y . . . ADAMTS6 11174 broad.mit.edu 36 5 64546913 64546913 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_197941 exon19 c.C2430T p.I810I . . . TRIM23 373 broad.mit.edu 36 5 64941004 64941004 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033228 exon6 c.G866A p.R289Q . . . ERBB2IP 55914 broad.mit.edu 36 5 65378058 65378058 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018695 exon18 c.T1724C p.V575A . . . CDK7 1022 broad.mit.edu 36 5 68567026 68567026 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001799 exon2 c.C116T p.A39V . . . OCLN 4950 broad.mit.edu 36 5 68841201 68841201 + Silent SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002538 exon3 c.G528C p.V176V . . . MAP1B 4131 broad.mit.edu 36 5 71528156 71528156 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005909 exon5 c.G3218A p.G1073E . . . MAP1B 4131 broad.mit.edu 36 5 71531653 71531653 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005909 exon5 c.C6715A p.L2239M . . . PTCD2 79810 broad.mit.edu 36 5 71689942 71689942 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024754 exon10 c.C1099T p.L367L . . . TNPO1 3842 broad.mit.edu 36 5 72224993 72224993 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153188 exon17 c.C1906T p.P636S . . . FCHO2 115548 broad.mit.edu 36 5 72384049 72384049 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146032 exon12 c.A1033C p.K345Q . . . FCHO2 115548 broad.mit.edu 36 5 72400309 72400309 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146032 exon18 c.C1427A p.S476Y . . . COL4A3BP 10087 broad.mit.edu 36 5 74717502 74717502 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130105 exon14 c.C1782T p.D594D . . . SV2C 22987 broad.mit.edu 36 5 75657016 75657016 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014979 exon13 c.C2072A p.S691Y . . . IQGAP2 10788 broad.mit.edu 36 5 75932439 75932439 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006633 exon11 c.C1118T p.S373F . . . PDE8B 8622 broad.mit.edu 36 5 76736356 76736356 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003719 exon12 c.G1266A p.S422S . . . ADCY2 108 broad.mit.edu 36 5 7751384 7751384 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020546 exon7 c.A1006T p.I336F . . . AP3B1 8546 broad.mit.edu 36 5 77547672 77547672 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003664 exon7 c.G749A p.R250Q . . . ADCY2 108 broad.mit.edu 36 5 7826192 7826192 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020546 exon18 c.T2362C p.Y788H . . . DMGDH 29958 broad.mit.edu 36 5 78329667 78329667 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013391 exon16 c.A2595C p.K865N . . . DMGDH 29958 broad.mit.edu 36 5 78355890 78355890 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013391 exon14 c.C2210A p.P737H . . . DMGDH 29958 broad.mit.edu 36 5 78376050 78376050 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013391 exon6 c.C827T p.S276L . . . DMGDH 29958 broad.mit.edu 36 5 78387433 78387433 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013391 exon3 c.G331T p.D111Y . . . BHMT2 23743 broad.mit.edu 36 5 78410950 78410950 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178005 exon3 c.C169T p.R57C . . . PAPD4 167153 broad.mit.edu 36 5 78951652 78951652 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114394 exon3 c.C217T p.R73X . . . CMYA5 202333 broad.mit.edu 36 5 79066449 79066449 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153610 exon2 c.T6105C p.D2035D . . . CMYA5 202333 broad.mit.edu 36 5 79090431 79090431 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153610 exon7 c.C11210A p.S3737X . . . FASTKD3 79072 broad.mit.edu 36 5 7920000 7920000 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024091 exon2 c.A1197C p.Q399H . . . SPZ1 84654 broad.mit.edu 36 5 79652505 79652505 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032567 exon1 c.G715T p.E239X . . . ZFYVE16 9765 broad.mit.edu 36 5 79804404 79804404 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105251 exon16 c.G4093T p.D1365Y . . . RASGRF2 5924 broad.mit.edu 36 5 80511803 80511803 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006909 exon18 c.G2740T p.A914S . . . ACOT12 134526 broad.mit.edu 36 5 80662442 80662442 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130767 exon14 c.G1465T p.E489X . . . RPS23 6228 broad.mit.edu 36 5 81609316 81609316 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025 exon2 c.A116C p.N39T . . . XRCC4 7518 broad.mit.edu 36 5 82536478 82536478 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022406 exon6 c.C727T p.L243F . . . VCAN 1462 broad.mit.edu 36 5 82868907 82868907 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164097 exon7 c.C1368A p.F456L . . . VCAN 1462 broad.mit.edu 36 5 82871235 82871235 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164097 exon7 c.A3696G p.E1232E . . . VCAN 1462 broad.mit.edu 36 5 82873840 82873840 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164097 exon7 c.C6301A p.P2101T . . . HAPLN1 1404 broad.mit.edu 36 5 82973156 82973156 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001884 exon5 c.C980A p.P327H . . . RASA1 5921 broad.mit.edu 36 5 86708468 86708468 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002890 exon17 c.G2199A p.K733K . . . CCNH 902 broad.mit.edu 36 5 86742831 86742831 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001239 exon2 c.C206T p.S69L . . . MEF2C 4208 broad.mit.edu 36 5 88063453 88063453 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193350 exon7 c.G659A p.R220Q . . . GPR98 84059 broad.mit.edu 36 5 90028688 90028688 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032119 exon34 c.G8124T p.Q2708H . . . GPR98 84059 broad.mit.edu 36 5 90043888 90043888 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032119 exon42 c.A9071G p.Y3024C . . . ARRDC3 57561 broad.mit.edu 36 5 90705711 90705711 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020801 exon6 c.T1009G p.L337V . . . C5orf36 285600 broad.mit.edu 36 5 93882005 93882005 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145678 exon5 c.G674T p.W225L . . . CAST 831 broad.mit.edu 36 5 96101525 96101525 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173060 exon9 c.G511T p.E171X . . . LIX1 167410 broad.mit.edu 36 5 96456336 96456336 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153234 exon6 c.G721T p.E241X . . . CHD1 1105 broad.mit.edu 36 5 98220285 98220285 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001270 exon35 c.G4832T p.R1611M . . . CHD1 1105 broad.mit.edu 36 5 98237202 98237202 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001270 exon25 c.G3566A p.R1189Q . . . USP45 85015 broad.mit.edu 36 6 100000610 100000610 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080481 exon14 c.T1759G p.L587V . . . SIM1 6492 broad.mit.edu 36 6 100945086 100945086 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005068 exon11 c.G2173A p.E725K . . . ASCC3 10973 broad.mit.edu 36 6 101064581 101064581 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006828 exon41 c.C6409T p.R2137X . . . ATG5 9474 broad.mit.edu 36 6 106741143 106741143 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004849 exon8 c.C793A p.L265I . . . ATG5 9474 broad.mit.edu 36 6 106870761 106870761 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004849 exon2 c.G16T p.D6Y . . . GCNT2 2651 broad.mit.edu 36 6 10734777 10734777 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145655 exon3 c.G1160T p.R387I . . . SOBP 55084 broad.mit.edu 36 6 107934240 107934240 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018013 exon3 c.G337T p.D113Y . . . ARMC2 84071 broad.mit.edu 36 6 109332251 109332251 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032131 exon8 c.G973T p.D325Y . . . FIG4 9896 broad.mit.edu 36 6 110217513 110217513 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014845 exon19 c.G2120T p.G707V . . . REV3L 5980 broad.mit.edu 36 6 111795276 111795276 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002912 exon14 c.C6408A p.S2136S . . . WISP3 8838 broad.mit.edu 36 6 112492820 112492820 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198239 exon3 c.G570T p.K190N . . . WISP3 8838 broad.mit.edu 36 6 112496268 112496268 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198239 exon4 c.G811A p.D271N . . . C6orf225 619208 broad.mit.edu 36 6 112528635 112528635 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033564 exon4 c.A195G p.T65T . . . LAMA4 3910 broad.mit.edu 36 6 112557839 112557839 + Silent SNP G A A rs34753919 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105207 exon30 c.C4044T p.F1348F . . . FAM26E 254228 broad.mit.edu 36 6 116943526 116943526 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153711 exon2 c.G611A p.R204Q . . . RSPH4A 345895 broad.mit.edu 36 6 117060087 117060087 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010892 exon6 c.C1941A p.G647G . . . GPRC6A 222545 broad.mit.edu 36 6 117223647 117223647 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148963 exon5 c.G1593T p.M531I . . . GPRC6A 222545 broad.mit.edu 36 6 117234243 117234243 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148963 exon3 c.G1318A p.A440T . . . RFX6 222546 broad.mit.edu 36 6 117344124 117344124 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173560 exon9 c.C926A p.P309H . . . RFX6 222546 broad.mit.edu 36 6 117352542 117352542 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173560 exon15 c.C1573T p.R525X . . . RFX6 222546 broad.mit.edu 36 6 117353312 117353312 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173560 exon16 c.C1682T p.A561V . . . ROS1 6098 broad.mit.edu 36 6 117813629 117813629 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002944 exon15 c.G2214T p.E738D . . . ROS1 6098 broad.mit.edu 36 6 117817395 117817395 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002944 exon12 c.T1570C p.S524P . . . ROS1 6098 broad.mit.edu 36 6 117822530 117822530 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002944 exon9 c.A921T p.K307N . . . DCBLD1 285761 broad.mit.edu 36 6 117947797 117947797 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173674 exon3 c.G451A p.D151N . . . C6orf204 387119 broad.mit.edu 36 6 118911699 118911699 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178035 exon8 c.C1462T p.R488X . . . ASF1A 25842 broad.mit.edu 36 6 119270383 119270383 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014034 exon3 c.C413A p.S138Y . . . FAM184A 79632 broad.mit.edu 36 6 119379789 119379789 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024581 exon5 c.G1352T p.R451I . . . C6orf170 221322 broad.mit.edu 36 6 121604384 121604384 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152730 exon19 c.A2171C p.K724T . . . RNF146 81847 broad.mit.edu 36 6 127650259 127650259 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030963 exon5 c.C805A p.H269N . . . KIAA0408 9729 broad.mit.edu 36 6 127809815 127809815 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014702 exon5 c.A1342C p.T448P . . . C6orf174 387104 broad.mit.edu 36 6 127879307 127879307 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012279 exon2 c.C146T p.S49L . . . C6orf58 352999 broad.mit.edu 36 6 127954402 127954402 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010905 exon6 c.C935A p.S312Y . . . PTPRK 5796 broad.mit.edu 36 6 128441729 128441729 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002844 exon11 c.T1805C p.V602A . . . PTPRK 5796 broad.mit.edu 36 6 128445307 128445307 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002844 exon10 c.C1745T p.A582V . . . LAMA2 3908 broad.mit.edu 36 6 129614992 129614992 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079823 exon14 c.T1955C p.V652A . . . LAMA2 3908 broad.mit.edu 36 6 129801551 129801551 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079823 exon42 c.C6036A p.L2012L . . . LAMA2 3908 broad.mit.edu 36 6 129877407 129877407 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079823 exon63 c.A9173G p.D3058G . . . EPB41L2 2037 broad.mit.edu 36 6 131247958 131247958 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135555 exon12 c.G1804A p.A602T . . . MED23 9439 broad.mit.edu 36 6 131953238 131953238 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015979 exon28 c.G3742A p.E1248K . . . MED23 9439 broad.mit.edu 36 6 131954258 131954258 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015979 exon27 c.G3592T p.D1198Y . . . MOXD1 26002 broad.mit.edu 36 6 132660740 132660740 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015529 exon11 c.C1556A p.S519Y . . . TAAR9 134860 broad.mit.edu 36 6 132901754 132901754 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175057 exon1 c.C633T p.V211V . . . PHACTR1 221692 broad.mit.edu 36 6 13290884 13290884 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030948 exon6 c.C651A p.I217I . . . TAAR8 83551 broad.mit.edu 36 6 132916324 132916324 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053278 exon1 c.T800C p.V267A . . . SLC2A12 154091 broad.mit.edu 36 6 134391947 134391947 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145176 exon2 c.C709A p.L237I . . . ALDH8A1 64577 broad.mit.edu 36 6 135281297 135281297 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170771 exon6 c.G1251T p.K417N . . . FAM54A 113115 broad.mit.edu 36 6 136596236 136596236 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138419 exon7 c.G964A p.A322T . . . MAP3K5 4217 broad.mit.edu 36 6 137022120 137022120 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005923 exon9 c.G1456A p.V486I . . . SLC35D3 340146 broad.mit.edu 36 6 137287427 137287427 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008783 exon2 c.C1151T p.S384L . . . IFNGR1 3459 broad.mit.edu 36 6 137563759 137563759 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000416 exon6 c.G813T p.K271N . . . KIAA1244 57221 broad.mit.edu 36 6 138649545 138649545 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020340 exon16 c.C2584T p.R862C . . . CCDC28A 25901 broad.mit.edu 36 6 139148062 139148062 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015439 exon4 c.G598T p.E200X . . . REPS1 85021 broad.mit.edu 36 6 139283074 139283074 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031922 exon12 c.C1499T p.S500L . . . REPS1 85021 broad.mit.edu 36 6 139306829 139306829 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031922 exon6 c.G770A p.R257Q . . . TXLNB 167838 broad.mit.edu 36 6 139633342 139633342 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153235 exon4 c.C631T p.R211X . . . CITED2 10370 broad.mit.edu 36 6 139736093 139736093 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168388 exon2 c.C682A p.L228I . . . HIVEP2 3097 broad.mit.edu 36 6 143132856 143132856 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006734 exon5 c.C4713T p.I1571I . . . ADAT2 134637 broad.mit.edu 36 6 143791297 143791297 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182503 exon6 c.C572A p.S191Y . . . FUCA2 2519 broad.mit.edu 36 6 143870227 143870227 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032020 exon2 c.G252A p.P84P . . . FBXO30 84085 broad.mit.edu 36 6 146168564 146168564 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032145 exon2 c.C671T p.A224V . . . TAB2 23118 broad.mit.edu 36 6 149741757 149741757 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015093 exon5 c.C1013A p.S338Y . . . RAET1E 135250 broad.mit.edu 36 6 150252836 150252836 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139165 exon2 c.G224A p.G75D . . . ULBP1 80329 broad.mit.edu 36 6 150326945 150326945 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025218 exon1 c.T67C p.S23P . . . IYD 389434 broad.mit.edu 36 6 150755325 150755325 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164695 exon3 c.G522T p.K174N . . . MTHFD1L 25902 broad.mit.edu 36 6 151299756 151299756 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015440 exon12 c.G1380A p.T460T . . . AKAP12 9590 broad.mit.edu 36 6 151711633 151711633 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005100 exon4 c.G414A p.G138G . . . AKAP12 9590 broad.mit.edu 36 6 151715063 151715063 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005100 exon4 c.G3844A p.E1282K . . . C6orf211 79624 broad.mit.edu 36 6 151821189 151821189 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024573 exon3 c.C181A p.L61I . . . C6orf97 80129 broad.mit.edu 36 6 151959288 151959288 + Silent SNP G A A rs3757321 byHapMap TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025059 exon9 c.G1593A p.A531A . . . ESR1 2099 broad.mit.edu 36 6 152461562 152461562 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122740 exon9 c.A1556G p.N519S . . . SYNE1 23345 broad.mit.edu 36 6 152640981 152640981 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015293 exon13 c.G2081T p.R694I . . . SYNE1 23345 broad.mit.edu 36 6 152644643 152644643 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015293 exon12 c.G1945A p.D649N . . . SYNE1 23345 broad.mit.edu 36 6 152646899 152646899 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015293 exon11 c.G1686A p.A562A . . . SYNE1 23345 broad.mit.edu 36 6 152686460 152686460 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033071 exon81 c.G15550A p.D5184N . . . SYNE1 23345 broad.mit.edu 36 6 152721248 152721248 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033071 exon66 c.C10582A p.L3528I . . . SYNE1 23345 broad.mit.edu 36 6 152764168 152764168 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033071 exon47 c.T6848G p.F2283C . . . SYNE1 23345 broad.mit.edu 36 6 152767097 152767097 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033071 exon46 c.A6790G p.K2264E . . . SYNE1 23345 broad.mit.edu 36 6 152770006 152770006 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033071 exon45 c.G6580T p.E2194X . . . SYNE1 23345 broad.mit.edu 36 6 152810371 152810371 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033071 exon29 c.C3605A p.S1202Y . . . TIAM2 26230 broad.mit.edu 36 6 155500377 155500377 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_012454 exon4 c.G1569T p.K523N . . . ARID1B 57492 broad.mit.edu 36 6 157543948 157543948 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017519 exon11 c.C3250T p.P1084S . . . TULP4 56995 broad.mit.edu 36 6 158770861 158770861 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007466 exon3 c.G487A p.E163K . . . FNDC1 84624 broad.mit.edu 36 6 159556156 159556156 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032532 exon5 c.G652A p.E218K . . . FNDC1 84624 broad.mit.edu 36 6 159592337 159592337 + Silent SNP G A A rs45576631 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032532 exon17 c.G4848A p.T1616T . . . MAS1 4142 broad.mit.edu 36 6 160248203 160248203 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002377 exon1 c.G226A p.A76T . . . IGF2R 3482 broad.mit.edu 36 6 160404549 160404549 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000876 exon27 c.C3783A p.V1261V . . . LPA 4018 broad.mit.edu 36 6 160932004 160932004 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005577 exon24 c.C3749A p.S1250X . . . MAP3K4 4216 broad.mit.edu 36 6 161390118 161390118 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006724 exon3 c.G824A p.R275Q . . . PARK2 5071 broad.mit.edu 36 6 161910430 161910430 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004562 exon8 c.C880T p.P294S . . . QKI 9444 broad.mit.edu 36 6 163907746 163907746 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006775 exon7 c.C938T p.A313V . . . UNC93A 54346 broad.mit.edu 36 6 167648775 167648775 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143947 exon7 c.G1093A p.V365M . . . MLLT4 4301 broad.mit.edu 36 6 168095296 168095296 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040000 exon29 c.C4392T p.P1464P . . . FRMD1 79981 broad.mit.edu 36 6 168210334 168210334 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122841 exon4 c.C207T p.F69F . . . WDR27 253769 broad.mit.edu 36 6 169806268 169806268 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182552 exon8 c.C823T p.R275C . . . TCTE3 6991 broad.mit.edu 36 6 169886287 169886287 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174910 exon2 c.G129A p.Q43Q . . . FAM120B 84498 broad.mit.edu 36 6 170468775 170468775 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032448 exon2 c.G372A p.E124E . . . FAM8A1 51439 broad.mit.edu 36 6 17713155 17713155 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016255 exon3 c.A873C p.E291D . . . NUP153 9972 broad.mit.edu 36 6 17814493 17814493 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005124 exon1 c.G105A p.Q35Q . . . DCDC2 51473 broad.mit.edu 36 6 24465740 24465740 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195610 exon2 c.G218A p.R73Q . . . LRRC16A 55604 broad.mit.edu 36 6 25689536 25689536 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017640 exon31 c.C2896T p.R966W . . . HIST1H3C 8352 broad.mit.edu 36 6 26153768 26153768 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003531 exon1 c.G151A p.E51K . . . PRSS16 10279 broad.mit.edu 36 6 27324908 27324908 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005865 exon4 c.G388C p.E130Q . . . ZNF391 346157 broad.mit.edu 36 6 27476189 27476189 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001076781 exon3 c.G61A p.E21K . . . ZKSCAN4 387032 broad.mit.edu 36 6 28321555 28321555 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019110 exon5 c.G956A p.R319Q . . . ZNF311 282890 broad.mit.edu 36 6 29071968 29071968 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010877 exon7 c.C790T p.L264F . . . OR2J3 442186 broad.mit.edu 36 6 29187925 29187925 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005216 exon1 c.G279T p.K93N . . . OR2J2 26707 broad.mit.edu 36 6 29250190 29250190 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030905 exon1 c.A799C p.N267H . . . OR5V1 81696 broad.mit.edu 36 6 29431888 29431888 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030876 exon1 c.G64T p.E22X . . . OR12D3 81797 broad.mit.edu 36 6 29450444 29450444 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030959 exon1 c.C600A p.V200V . . . OR2H2 7932 broad.mit.edu 36 6 29664309 29664309 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007160 exon1 c.C609A p.F203L . . . MOG 4340 broad.mit.edu 36 6 29746476 29746476 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206812 exon6 c.A612G p.L204L . . . TUBB2A 7280 broad.mit.edu 36 6 3099126 3099126 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001069 exon4 c.C1308T p.F436F . . . CCHCR1 54535 broad.mit.edu 36 6 31230500 31230500 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105563 exon4 c.C445T p.R149W . . . HLA-DRA 3122 broad.mit.edu 36 6 32518334 32518334 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019111 exon2 c.G214T p.E72X . . . HLA-DRA 3122 broad.mit.edu 36 6 32518978 32518978 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019111 exon3 c.G367T p.E123X . . . HSD17B8 7923 broad.mit.edu 36 6 33282398 33282398 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014234 exon9 c.C775A p.L259I . . . ITPR3 3710 broad.mit.edu 36 6 33761983 33761983 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002224 exon42 c.G5843T p.C1948F . . . GRM4 2914 broad.mit.edu 36 6 34209209 34209209 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000841 exon1 c.C43T p.P15S . . . C6orf106 64771 broad.mit.edu 36 6 34772261 34772261 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022758 exon1 c.G98T p.R33M . . . SCUBE3 222663 broad.mit.edu 36 6 35321123 35321123 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152753 exon19 c.G2542T p.E848X . . . FKBP5 2289 broad.mit.edu 36 6 35655891 35655891 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145775 exon10 c.C926T p.S309L . . . SRPK1 6732 broad.mit.edu 36 6 35911240 35911240 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003137 exon16 c.A1787G p.D596G . . . CPNE5 57699 broad.mit.edu 36 6 36875781 36875781 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020939 exon4 c.C228T p.F76F . . . C6orf89 221477 broad.mit.edu 36 6 36990371 36990371 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152734 exon5 c.G640T p.E214X . . . MDGA1 266727 broad.mit.edu 36 6 37721697 37721697 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153487 exon12 c.G2238A p.P746P . . . DNAH8 1769 broad.mit.edu 36 6 38970605 38970605 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001371 exon57 c.G8083A p.V2695I . . . PECI 10455 broad.mit.edu 36 6 4071459 4071459 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206836 exon6 c.T583G p.Y195D . . . TREM1 54210 broad.mit.edu 36 6 41358252 41358252 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018643 exon2 c.G265A p.D89N . . . GUCA1B 2979 broad.mit.edu 36 6 42264323 42264323 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002098 exon2 c.G332A p.R111H . . . TRERF1 55809 broad.mit.edu 36 6 42332525 42332525 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033502 exon12 c.C2499T p.C833C . . . TRERF1 55809 broad.mit.edu 36 6 42344766 42344766 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033502 exon5 c.C541A p.L181I . . . PRPH2 5961 broad.mit.edu 36 6 42797503 42797503 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000322 exon1 c.G548A p.R183H . . . PTK7 5754 broad.mit.edu 36 6 43204842 43204842 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152880 exon2 c.C229T p.R77W . . . PTK7 5754 broad.mit.edu 36 6 43219154 43219154 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152880 exon13 c.C1949T p.S650L . . . CUL9 23113 broad.mit.edu 36 6 43263458 43263458 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015089 exon7 c.C1611A p.I537I . . . CUL9 23113 broad.mit.edu 36 6 43274562 43274562 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015089 exon12 c.C3041A p.S1014Y . . . ZNF318 24149 broad.mit.edu 36 6 43413076 43413076 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014345 exon10 c.C6638T p.S2213L . . . TMEM63B 55362 broad.mit.edu 36 6 44225594 44225594 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018426 exon16 c.C1434A p.F478L . . . TDRD6 221400 broad.mit.edu 36 6 46767023 46767023 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010870 exon1 c.T3199G p.F1067V . . . PLA2G7 7941 broad.mit.edu 36 6 46786257 46786257 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168357 exon8 c.A761G p.D254G . . . CDYL 9425 broad.mit.edu 36 6 4888785 4888785 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143970 exon5 c.C732T p.F244F . . . RHAG 6005 broad.mit.edu 36 6 49693779 49693779 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000324 exon3 c.C453A p.F151L . . . CRISP3 10321 broad.mit.edu 36 6 49809477 49809477 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006061 exon5 c.C360T p.S120S . . . PKHD1 5314 broad.mit.edu 36 6 51632688 51632688 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138694 exon61 c.C10195A p.L3399M . . . EFHC1 114327 broad.mit.edu 36 6 52426966 52426966 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018100 exon5 c.G838A p.E280K . . . GSTA5 221357 broad.mit.edu 36 6 52809012 52809012 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153699 exon4 c.G253T p.D85Y . . . FBXO9 26268 broad.mit.edu 36 6 53070543 53070543 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012347 exon12 c.G1300A p.A434T . . . TINAG 27283 broad.mit.edu 36 6 54281538 54281538 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014464 exon1 c.G231A p.A77A . . . HCRTR2 3062 broad.mit.edu 36 6 55147450 55147450 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001526 exon1 c.G106A p.D36N . . . GFRAL 389400 broad.mit.edu 36 6 55331816 55331816 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207410 exon6 c.T873C p.C291C . . . COL21A1 81578 broad.mit.edu 36 6 56033525 56033525 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030820 exon27 c.C2380T p.R794X . . . DST 667 broad.mit.edu 36 6 56525647 56525647 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015548 exon42 c.C8033T p.S2678L . . . KIAA1586 57691 broad.mit.edu 36 6 57023564 57023564 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020931 exon3 c.G139A p.D47N . . . ZNF451 26036 broad.mit.edu 36 6 57120231 57120231 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015555 exon10 c.G1389T p.Q463H . . . LGSN 51557 broad.mit.edu 36 6 64048544 64048544 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016571 exon4 c.G871T p.E291X . . . EYS 346007 broad.mit.edu 36 6 66101727 66101727 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198283 exon10 c.G1633T p.E545X . . . EYS 346007 broad.mit.edu 36 6 66257267 66257267 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198283 exon4 c.G803T p.G268V . . . COL9A1 1297 broad.mit.edu 36 6 71040478 71040478 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001851 exon12 c.G1058T p.G353V . . . COL9A1 1297 broad.mit.edu 36 6 71041191 71041191 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001851 exon11 c.A981C p.L327F . . . FAM135A 57579 broad.mit.edu 36 6 71291841 71291841 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162529 exon13 c.C2333T p.S778F . . . B3GAT2 135152 broad.mit.edu 36 6 71628290 71628290 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080742 exon3 c.C849T p.V283V . . . B3GAT2 135152 broad.mit.edu 36 6 71722581 71722581 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080742 exon1 c.C273T p.R91R . . . RIMS1 22999 broad.mit.edu 36 6 73024580 73024580 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168409 exon12 c.A981C p.K327N . . . RIMS1 22999 broad.mit.edu 36 6 73157024 73157024 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168409 exon18 c.C1574T p.S525L . . . RIMS1 22999 broad.mit.edu 36 6 73167102 73167102 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168409 exon22 c.G2248T p.E750X . . . DDX43 55510 broad.mit.edu 36 6 74180212 74180212 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018665 exon12 c.C1479T p.F493F . . . CD109 135228 broad.mit.edu 36 6 74496850 74496850 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133493 exon4 c.G339T p.E113D . . . CD109 135228 broad.mit.edu 36 6 74529191 74529191 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133493 exon9 c.G862T p.G288X . . . CD109 135228 broad.mit.edu 36 6 74546916 74546916 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133493 exon16 c.T1876C p.F626L . . . CD109 135228 broad.mit.edu 36 6 74584897 74584897 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133493 exon31 c.T3977C p.V1326A . . . DSP 1832 broad.mit.edu 36 6 7525157 7525157 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004415 exon23 c.A3735G p.E1245E . . . DSP 1832 broad.mit.edu 36 6 7528549 7528549 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008844 exon24 c.G4258A p.A1420T . . . COL12A1 1303 broad.mit.edu 36 6 75891677 75891677 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004370 exon40 c.G6493T p.E2165X . . . COL12A1 1303 broad.mit.edu 36 6 75947641 75947641 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004370 exon11 c.T1898C p.V633A . . . COL12A1 1303 broad.mit.edu 36 6 75950059 75950059 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004370 exon10 c.G1318A p.D440N . . . TMEM30A 55754 broad.mit.edu 36 6 76025300 76025300 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018247 exon6 c.C808T p.R270C . . . PHIP 55023 broad.mit.edu 36 6 79737289 79737289 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017934 exon25 c.C2925T p.V975V . . . LCA5 167691 broad.mit.edu 36 6 80254141 80254141 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181714 exon9 c.G1393T p.E465X . . . SH3BGRL2 83699 broad.mit.edu 36 6 80440124 80440124 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031469 exon2 c.A120G p.T40T . . . TTK 7272 broad.mit.edu 36 6 80801566 80801566 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166691 exon15 c.G1757A p.R586Q . . . TTK 7272 broad.mit.edu 36 6 80806273 80806273 + Missense_Mutation SNP G A A rs2230512 byFrequency TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166691 exon19 c.G2269A p.D757N . . . ME1 4199 broad.mit.edu 36 6 83978413 83978413 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002395 exon14 c.T1668C p.C556C . . . PRSS35 167681 broad.mit.edu 36 6 84290591 84290591 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170423 exon3 c.C712T p.R238W . . . SNAP91 9892 broad.mit.edu 36 6 84359923 84359923 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014841 exon17 c.C1689A p.I563I . . . SNAP91 9892 broad.mit.edu 36 6 84367873 84367873 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014841 exon15 c.C1160A p.S387Y . . . SNAP91 9892 broad.mit.edu 36 6 84428856 84428856 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014841 exon4 c.T278G p.F93C . . . MRAP2 112609 broad.mit.edu 36 6 84821881 84821881 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138409 exon2 c.A125C p.K42T . . . TBX18 9096 broad.mit.edu 36 6 85514476 85514476 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080508 exon5 c.C820T p.R274C . . . HTR1E 3354 broad.mit.edu 36 6 87782466 87782466 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000865 exon2 c.C695A p.S232Y . . . PM20D2 135293 broad.mit.edu 36 6 89928576 89928576 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010853 exon7 c.C1186T p.R396W . . . MDN1 23195 broad.mit.edu 36 6 90451324 90451324 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014611 exon71 c.G11821T p.E3941X . . . CASP8AP2 9994 broad.mit.edu 36 6 90633697 90633697 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001137667 exon8 c.C3967A p.L1323I . . . MAP3K7 6885 broad.mit.edu 36 6 91283066 91283066 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003188 exon16 c.C1615T p.R539C . . . FUT9 10690 broad.mit.edu 36 6 96758491 96758491 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006581 exon3 c.T739G p.S247A . . . KLHL32 114792 broad.mit.edu 36 6 97668873 97668873 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052904 exon7 c.G1121A p.R374H . . . C6orf167 253714 broad.mit.edu 36 6 97809308 97809308 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198468 exon10 c.A965C p.K322T . . . HLA-A 3105 broad.mit.edu 36 6 30019157 30019161 + Frame_Shift_Del DEL GGCGG - - novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 GGCGG GGCGG GGCGG - GGCGG GGCGG Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002116 exon3 c.477_481del p.159_161del . . . MIR133B 442890 broad.mit.edu 36 6 52121746 52121746 + RNA SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . MIR30C2 407032 broad.mit.edu 36 6 72143432 72143432 + RNA SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . TFR2 7036 broad.mit.edu 36 7 100066467 100066467 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003227 exon9 c.C1251T p.I417I . . . ACTL6B 51412 broad.mit.edu 36 7 100090650 100090650 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016188 exon4 c.C297T p.I99I . . . MUC17 140453 broad.mit.edu 36 7 100468376 100468376 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040105 exon3 c.C6959A p.P2320H . . . FBXL13 222235 broad.mit.edu 36 7 102340871 102340871 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111038 exon11 c.T906C p.S302S . . . LRRC17 10234 broad.mit.edu 36 7 102362206 102362206 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005824 exon2 c.C610T p.R204W . . . NAPEPLD 222236 broad.mit.edu 36 7 102556392 102556392 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198990 exon2 c.A68G p.K23R . . . SLC26A5 375611 broad.mit.edu 36 7 102818189 102818189 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206884 exon12 c.C1234A p.L412I . . . RELN 5649 broad.mit.edu 36 7 102981490 102981490 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005045 exon39 c.T5822G p.V1941G . . . RELN 5649 broad.mit.edu 36 7 102993111 102993111 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005045 exon34 c.C5060A p.S1687Y . . . RELN 5649 broad.mit.edu 36 7 103125589 103125589 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005045 exon10 c.C1090A p.L364I . . . MLL5 55904 broad.mit.edu 36 7 104491260 104491260 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182931 exon5 c.G413T p.C138F . . . PUS7 54517 broad.mit.edu 36 7 104890365 104890365 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019042 exon14 c.C1696T p.R566X . . . PIK3CG 5294 broad.mit.edu 36 7 106295954 106295954 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002649 exon2 c.G712A p.D238N . . . BCAP29 55973 broad.mit.edu 36 7 107023571 107023571 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008405 exon4 c.T368G p.L123R . . . LAMB4 22798 broad.mit.edu 36 7 107504685 107504685 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007356 exon17 c.C2064A p.V688V . . . PNPLA8 50640 broad.mit.edu 36 7 107942357 107942357 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015723 exon4 c.C815A p.P272H . . . THAP5 168451 broad.mit.edu 36 7 107992199 107992199 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130475 exon3 c.C860A p.S287Y . . . DOCK4 9732 broad.mit.edu 36 7 111372162 111372162 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014705 exon10 c.G784T p.D262Y . . . TMEM168 64418 broad.mit.edu 36 7 112212017 112212017 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022484 exon2 c.C100T p.R34W . . . PPP1R3A 5506 broad.mit.edu 36 7 113345589 113345589 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002711 exon1 c.G699T p.K233N . . . TFEC 22797 broad.mit.edu 36 7 115369245 115369245 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018058 exon6 c.G514T p.E172X . . . THSD7A 221981 broad.mit.edu 36 7 11642959 11642959 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015204 exon2 c.C345T p.C115C . . . ST7 7982 broad.mit.edu 36 7 116649263 116649263 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018412 exon14 c.C1480A p.L494I . . . ASZ1 136991 broad.mit.edu 36 7 116794657 116794657 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130768 exon12 c.A1260C p.K420N . . . CFTR 1080 broad.mit.edu 36 7 117017656 117017656 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000492 exon13 c.G1693T p.D565Y . . . ANKRD7 56311 broad.mit.edu 36 7 117663391 117663391 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019644 exon4 c.C529A p.L177I . . . KCND2 3751 broad.mit.edu 36 7 119702460 119702460 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012281 exon1 c.A538G p.T180A . . . PTPRZ1 5803 broad.mit.edu 36 7 121439821 121439821 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002851 exon12 c.C3485A p.S1162Y . . . PTPRZ1 5803 broad.mit.edu 36 7 121440293 121440293 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002851 exon12 c.T3957G p.I1319M . . . AASS 10157 broad.mit.edu 36 7 121544187 121544187 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005763 exon7 c.G748T p.E250X . . . CADPS2 93664 broad.mit.edu 36 7 121747610 121747610 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167940 exon30 c.C3748T p.R1250X . . . CADPS2 93664 broad.mit.edu 36 7 122048785 122048785 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167940 exon5 c.T1090C p.S364P . . . SLC13A1 6561 broad.mit.edu 36 7 122542827 122542827 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022444 exon15 c.G1769A p.S590N . . . SLC13A1 6561 broad.mit.edu 36 7 122556723 122556723 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022444 exon9 c.A981C p.K327N . . . WASL 8976 broad.mit.edu 36 7 123123914 123123914 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003941 exon6 c.A584C p.K195T . . . GPR37 2861 broad.mit.edu 36 7 124174187 124174187 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005302 exon2 c.G1470T p.M490I . . . POT1 25913 broad.mit.edu 36 7 124252584 124252584 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042594 exon17 c.G1357T p.D453Y . . . GRM8 2918 broad.mit.edu 36 7 125960720 125960720 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127323 exon9 c.G1952A p.R651Q . . . GRM8 2918 broad.mit.edu 36 7 126331948 126331948 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127323 exon4 c.G753T p.Q251H . . . ZNF800 168850 broad.mit.edu 36 7 126800827 126800827 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176814 exon5 c.A1799G p.Y600C . . . ZNF800 168850 broad.mit.edu 36 7 126802183 126802183 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176814 exon5 c.C443T p.S148L . . . FAM71F1 84691 broad.mit.edu 36 7 128142735 128142735 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032599 exon1 c.T4G p.L2V . . . FLNC 2318 broad.mit.edu 36 7 128266046 128266046 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001458 exon8 c.C1364T p.A455V . . . IRF5 3663 broad.mit.edu 36 7 128375221 128375221 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098627 exon7 c.G942A p.T314T . . . SMO 6608 broad.mit.edu 36 7 128632818 128632818 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005631 exon4 c.C879T p.I293I . . . AHCYL2 23382 broad.mit.edu 36 7 128849960 128849960 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015328 exon13 c.C1505T p.S502F . . . NRF1 4899 broad.mit.edu 36 7 129154318 129154318 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005011 exon10 c.G1225A p.E409K . . . MKLN1 4289 broad.mit.edu 36 7 130732590 130732590 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013255 exon5 c.G425A p.S142N . . . PODXL 5420 broad.mit.edu 36 7 130841216 130841216 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018111 exon8 c.C1430T p.A477V . . . PLXNA4 91584 broad.mit.edu 36 7 131820171 131820171 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181775 exon5 c.C1513A p.Q505K . . . PLXNA4 91584 broad.mit.edu 36 7 131843850 131843850 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181775 exon3 c.C143T p.A48V . . . AKR1B1 231 broad.mit.edu 36 7 133780544 133780544 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001628 exon9 c.C894A p.V298V . . . CALD1 800 broad.mit.edu 36 7 134276490 134276490 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033157 exon7 c.C807A p.F269L . . . SLC13A4 26266 broad.mit.edu 36 7 135043531 135043531 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012450 exon3 c.C236T p.A79V . . . UBN2 254048 broad.mit.edu 36 7 138596856 138596856 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173569 exon6 c.C1224T p.F408F . . . ETV1 2115 broad.mit.edu 36 7 13942013 13942013 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163147 exon7 c.G399A p.R133R . . . MKRN1 23608 broad.mit.edu 36 7 139805357 139805357 + Nonsense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145125 exon4 c.T690A p.Y230X . . . KIAA1147 57189 broad.mit.edu 36 7 141011543 141011543 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080392 exon6 c.G865A p.G289R . . . MGAM 8972 broad.mit.edu 36 7 141404526 141404526 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004668 exon31 c.C3748T p.R1250C . . . KEL 3792 broad.mit.edu 36 7 142349656 142349656 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000420 exon18 c.G2024A p.R675Q . . . CLCN1 1180 broad.mit.edu 36 7 142746752 142746752 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000083 exon14 c.G1498T p.E500X . . . OR2A5 393046 broad.mit.edu 36 7 143378664 143378664 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012365 exon1 c.G237T p.K79N . . . OR2A7 401427 broad.mit.edu 36 7 143586953 143586953 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005328 exon1 c.G702A p.R234R . . . NOBOX 135935 broad.mit.edu 36 7 143728275 143728275 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080413 exon3 c.G653A p.R218Q . . . NOBOX 135935 broad.mit.edu 36 7 143729089 143729089 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080413 exon2 c.G572A p.R191Q . . . NOBOX 135935 broad.mit.edu 36 7 143729155 143729155 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080413 exon2 c.G506A p.S169N . . . DGKB 1607 broad.mit.edu 36 7 14627584 14627584 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145695 exon14 c.G1231T p.D411Y . . . CNTNAP2 26047 broad.mit.edu 36 7 146372000 146372000 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014141 exon4 c.C471A p.R157R . . . CNTNAP2 26047 broad.mit.edu 36 7 146460314 146460314 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014141 exon8 c.C1128T p.V376V . . . INTS1 26173 broad.mit.edu 36 7 1479836 1479836 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080453 exon42 c.G5849A p.R1950H . . . LOC155060 155060 broad.mit.edu 36 7 148594626 148594626 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001195220 exon2 c.G292A p.V98M . . . ZNF777 27153 broad.mit.edu 36 7 148764825 148764825 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015694 exon5 c.C1113T p.I371I . . . ZNF467 168544 broad.mit.edu 36 7 149098572 149098572 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207336 exon3 c.C41A p.S14Y . . . SSPO 23145 broad.mit.edu 36 7 149143716 149143716 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198455 exon72 c.C10800A p.P3600P . . . ZNF862 643641 broad.mit.edu 36 7 149176123 149176123 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099220 exon4 c.T608C p.V203A . . . NOS3 4846 broad.mit.edu 36 7 150329942 150329942 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000603 exon13 c.G1603A p.A535T . . . GALNTL5 168391 broad.mit.edu 36 7 151342800 151342800 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145292 exon8 c.G1165A p.D389N . . . GALNT11 63917 broad.mit.edu 36 7 151422390 151422390 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022087 exon2 c.G145A p.G49R . . . MLL3 58508 broad.mit.edu 36 7 151509555 151509555 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170606 exon36 c.C6323A p.S2108Y . . . MLL3 58508 broad.mit.edu 36 7 151522139 151522139 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170606 exon31 c.C4548T p.G1516G . . . MLL3 58508 broad.mit.edu 36 7 151576486 151576486 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170606 exon14 c.G1966A p.V656I . . . XRCC2 7516 broad.mit.edu 36 7 151977022 151977022 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005431 exon3 c.A481G p.N161D . . . PAXIP1 22976 broad.mit.edu 36 7 154369188 154369188 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007349 exon19 c.C3100A p.H1034N . . . PAXIP1 22976 broad.mit.edu 36 7 154376990 154376990 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007349 exon16 c.G2729A p.R910H . . . RNF32 140545 broad.mit.edu 36 7 156140153 156140153 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184996 exon4 c.G397T p.E133X . . . UBE3C 9690 broad.mit.edu 36 7 156667771 156667771 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014671 exon8 c.G979A p.E327K . . . PTPRN2 5799 broad.mit.edu 36 7 157622110 157622110 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130843 exon8 c.G1171T p.E391X . . . VIPR2 7434 broad.mit.edu 36 7 158544030 158544030 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003382 exon5 c.A358G p.I120V . . . ANKMY2 57037 broad.mit.edu 36 7 16606989 16606989 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020319 exon10 c.G1248T p.K416N . . . HDAC9 9734 broad.mit.edu 36 7 18841705 18841705 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178423 exon20 c.T2548G p.F850V . . . TWISTNB 221830 broad.mit.edu 36 7 19704523 19704523 + Missense_Mutation SNP C T T rs61734275 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002926 exon4 c.G958A p.E320K . . . MACC1 346389 broad.mit.edu 36 7 20166148 20166148 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182762 exon5 c.G361T p.D121Y . . . ITGB8 3696 broad.mit.edu 36 7 20408240 20408240 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002214 exon10 c.T1653A p.F551L . . . ABCB5 340273 broad.mit.edu 36 7 20649436 20649436 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163941 exon6 c.G419A p.R140Q . . . DNAH11 8701 broad.mit.edu 36 7 21565909 21565909 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003777 exon4 c.G856T p.E286X . . . DNAH11 8701 broad.mit.edu 36 7 21732021 21732021 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003777 exon45 c.C7356T p.V2452V . . . DNAH11 8701 broad.mit.edu 36 7 21771598 21771598 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003777 exon55 c.C8990T p.S2997L . . . CDCA7L 55536 broad.mit.edu 36 7 21914578 21914578 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127371 exon3 c.G238T p.D80Y . . . GPNMB 10457 broad.mit.edu 36 7 23263125 23263125 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005340 exon4 c.C457A p.H153N . . . C7orf30 115416 broad.mit.edu 36 7 23307149 23307149 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138446 exon2 c.C423T p.Y141Y . . . IGF2BP3 10643 broad.mit.edu 36 7 23318891 23318891 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006547 exon14 c.C1629A p.F543L . . . IGF2BP3 10643 broad.mit.edu 36 7 23474678 23474678 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006547 exon2 c.G184T p.E62X . . . STK31 56164 broad.mit.edu 36 7 23821292 23821292 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122833 exon23 c.C2696A p.S899Y . . . CBX3 11335 broad.mit.edu 36 7 26218259 26218259 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007276 exon6 c.C458T p.A153V . . . HOXA4 3201 broad.mit.edu 36 7 27135475 27135475 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002141 exon2 c.C857T p.S286L . . . PLEKHA8 84725 broad.mit.edu 36 7 30058989 30058989 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001197027 exon7 c.A778G p.T260A . . . CRHR2 1395 broad.mit.edu 36 7 30668887 30668887 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001883 exon6 c.G645T p.M215I . . . INMT 11185 broad.mit.edu 36 7 30759891 30759891 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006774 exon2 c.G174A p.T58T . . . FAM188B 84182 broad.mit.edu 36 7 30784652 30784652 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032222 exon2 c.G143A p.R48Q . . . C7orf16 10842 broad.mit.edu 36 7 31703131 31703131 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006658 exon4 c.G263T p.R88I . . . FKBP9 11328 broad.mit.edu 36 7 33011438 33011438 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007270 exon10 c.G1663A p.A555T . . . NT5C3 51251 broad.mit.edu 36 7 33021974 33021974 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016489 exon9 c.C625A p.H209N . . . BBS9 27241 broad.mit.edu 36 7 33540122 33540122 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033605 exon20 c.C2315T p.S772F . . . BMPER 168667 broad.mit.edu 36 7 34091905 34091905 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133468 exon13 c.C1421A p.S474Y . . . BMPER 168667 broad.mit.edu 36 7 34149380 34149380 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133468 exon14 c.G1759T p.D587Y . . . NPSR1 387129 broad.mit.edu 36 7 34854665 34854665 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207172 exon8 c.A890G p.D297G . . . TBX20 57057 broad.mit.edu 36 7 35210659 35210659 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077653 exon7 c.C951T p.Y317Y . . . KIAA0895 23366 broad.mit.edu 36 7 36363215 36363215 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100425 exon3 c.G688T p.D230Y . . . AMPH 273 broad.mit.edu 36 7 38541089 38541089 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139316 exon2 c.C117T p.F39F . . . CDK13 8621 broad.mit.edu 36 7 40052126 40052126 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003718 exon6 c.T2520G p.C840W . . . CDK13 8621 broad.mit.edu 36 7 40100396 40100396 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003718 exon14 c.T3831C p.Y1277Y . . . SDK1 221935 broad.mit.edu 36 7 4119583 4119583 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152744 exon24 c.C3571T p.R1191W . . . GLI3 2737 broad.mit.edu 36 7 41971706 41971706 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000168 exon15 c.G3490A p.E1164K . . . C7orf25 79020 broad.mit.edu 36 7 42916199 42916199 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024054 exon2 c.C826T p.L276F . . . URGCP 55665 broad.mit.edu 36 7 43884664 43884664 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077664 exon6 c.C794T p.S265L . . . MYL7 58498 broad.mit.edu 36 7 44145954 44145954 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021223 exon5 c.C329T p.A110V . . . CAMK2B 816 broad.mit.edu 36 7 44260680 44260680 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172078 exon5 c.C327T p.S109S . . . ABCA13 154664 broad.mit.edu 36 7 48284578 48284578 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152701 exon15 c.T4606C p.X1536Q . . . ABCA13 154664 broad.mit.edu 36 7 48286236 48286236 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152701 exon15 c.G6264T p.X2088Y . . . ABCA13 154664 broad.mit.edu 36 7 48382410 48382410 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152701 exon31 c.G10740A p.S3580S . . . ABCA13 154664 broad.mit.edu 36 7 48590487 48590487 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152701 exon54 c.C14313T p.Y4771Y . . . PAPOLB 56903 broad.mit.edu 36 7 4867242 4867242 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020144 exon1 c.A726C p.L242F . . . EGFR 1956 broad.mit.edu 36 7 55191832 55191832 + Silent SNP G A A rs2302536 byCluster;byFrequency;byHapMap TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201282 exon9 c.G1119A p.P373P . . . SEPT14 346288 broad.mit.edu 36 7 55881806 55881806 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207366 exon3 c.C73T p.R25C . . . ZNF107 51427 broad.mit.edu 36 7 63804789 63804789 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013746 exon5 c.C672A p.V224V . . . ZNF117 51351 broad.mit.edu 36 7 64076830 64076830 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015852 exon4 c.G554T p.R185I . . . TPST1 8460 broad.mit.edu 36 7 65343049 65343049 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_003596 exon2 c.G202T p.D68Y . . . RABGEF1 27342 broad.mit.edu 36 7 65911476 65911476 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014504 exon9 c.C1246A p.L416I . . . WBSCR17 64409 broad.mit.edu 36 7 70780132 70780132 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022479 exon9 c.C1405T p.L469F . . . POM121 9883 broad.mit.edu 36 7 72054699 72054699 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172020 exon15 c.G2945A p.R982H . . . STX1A 6804 broad.mit.edu 36 7 72755209 72755209 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004603 exon8 c.G580A p.E194K . . . CCDC146 57639 broad.mit.edu 36 7 76746085 76746085 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020879 exon12 c.T1521G p.I507M . . . PCLO 27445 broad.mit.edu 36 7 82423238 82423238 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033026 exon5 c.T4967G p.L1656R . . . PCLO 27445 broad.mit.edu 36 7 82433252 82433252 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033026 exon4 c.A3788G p.D1263G . . . SEMA3D 223117 broad.mit.edu 36 7 84589096 84589096 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152754 exon1 c.T48C p.F16F . . . ABCB1 5243 broad.mit.edu 36 7 87067401 87067401 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000927 exon3 c.G36T p.K12N . . . RUNDC3B 154661 broad.mit.edu 36 7 87245062 87245062 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134405 exon8 c.G811T p.E271X . . . RUNDC3B 154661 broad.mit.edu 36 7 87274653 87274653 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134405 exon9 c.C986T p.S329L . . . C7orf63 79846 broad.mit.edu 36 7 89732577 89732577 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160138 exon5 c.C383T p.S128L . . . CYP51A1 1595 broad.mit.edu 36 7 91580928 91580928 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000786 exon10 c.G1517A p.R506Q . . . CYP51A1 1595 broad.mit.edu 36 7 91591030 91591030 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000786 exon6 c.G844T p.E282X . . . SAMD9L 219285 broad.mit.edu 36 7 92601868 92601868 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152703 exon5 c.G1353T p.M451I . . . HEPACAM2 253012 broad.mit.edu 36 7 92682901 92682901 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198151 exon2 c.C428A p.P143H . . . CALCR 799 broad.mit.edu 36 7 92893661 92893661 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001742 exon14 c.C1368T p.G456G . . . COL1A2 1278 broad.mit.edu 36 7 93893686 93893686 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000089 exon46 c.C3013T p.R1005C . . . COL1A2 1278 broad.mit.edu 36 7 93893775 93893775 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000089 exon46 c.C3102T p.I1034I . . . PPP1R9A 55607 broad.mit.edu 36 7 94578552 94578552 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166163 exon2 c.G1441A p.E481K . . . PPP1R9A 55607 broad.mit.edu 36 7 94753510 94753510 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166163 exon12 c.C2814T p.S938S . . . LMTK2 22853 broad.mit.edu 36 7 97658024 97658024 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014916 exon10 c.G1047A p.P349P . . . BAIAP2L1 55971 broad.mit.edu 36 7 97829662 97829662 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018842 exon2 c.A70G p.N24D . . . NPTX2 4885 broad.mit.edu 36 7 98092320 98092320 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002523 exon3 c.G794A p.G265D . . . TMEM130 222865 broad.mit.edu 36 7 98295746 98295746 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134451 exon2 c.C237T p.F79F . . . ATP5J2 9551 broad.mit.edu 36 7 98893896 98893896 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003713 exon4 c.A257C p.K86T . . . ZNF789 285989 broad.mit.edu 36 7 98922091 98922091 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213603 exon5 c.G322A p.D108N . . . CYP3A5 1577 broad.mit.edu 36 7 99099583 99099583 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000777 exon8 c.T742G p.F248V . . . CYP3A7 1551 broad.mit.edu 36 7 99146385 99146385 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000765 exon10 c.G932T p.S311I . . . CYP3A4 1576 broad.mit.edu 36 7 99197764 99197764 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017460 exon11 c.G1089A p.T363T . . . CYP3A43 64816 broad.mit.edu 36 7 99291193 99291193 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057096 exon8 c.C714T p.I238I . . . ZNF3 7551 broad.mit.edu 36 7 99506796 99506796 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032924 exon6 c.G1247T p.R416I . . . GPC2 221914 broad.mit.edu 36 7 99611288 99611288 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152742 exon3 c.C491T p.A164V . . . GATS 352954 broad.mit.edu 36 7 99659604 99659604 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178831 exon3 c.C248T p.A83V . . . ZCWPW1 55063 broad.mit.edu 36 7 99855201 99855201 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017984 exon4 c.G270T p.E90D . . . ZCWPW1 55063 broad.mit.edu 36 7 99855421 99855421 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017984 exon4 c.G50T p.R17I . . . SLC26A5 375611 broad.mit.edu 36 7 102802238 102802238 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167962 exon19 c.1983delT p.F661fs . . . VPS13B 157680 broad.mit.edu 36 8 100589306 100589306 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017890 exon28 c.C4290A p.F1430L . . . COX6C 1345 broad.mit.edu 36 8 100968956 100968956 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004374 exon3 c.G181T p.D61Y . . . NCALD 83988 broad.mit.edu 36 8 102774223 102774223 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040624 exon7 c.C456A p.I152I . . . AZIN1 51582 broad.mit.edu 36 8 103914616 103914616 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015878 exon10 c.C748A p.H250N . . . ATP6V1C1 528 broad.mit.edu 36 8 104137285 104137285 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001695 exon8 c.G586A p.D196N . . . PRSS55 203074 broad.mit.edu 36 8 10427899 10427899 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001197020 exon4 c.G672T p.K224N . . . CTHRC1 115908 broad.mit.edu 36 8 104463976 104463976 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138455 exon4 c.G704A p.R235H . . . DCAF13 25879 broad.mit.edu 36 8 104521638 104521638 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015420 exon9 c.G1505A p.R502H . . . RIMS2 9699 broad.mit.edu 36 8 104967004 104967004 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100117 exon4 c.G1001A p.R334Q . . . RIMS2 9699 broad.mit.edu 36 8 104997832 104997832 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100117 exon8 c.G1927T p.E643X . . . RIMS2 9699 broad.mit.edu 36 8 105018039 105018039 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100117 exon13 c.C2460T p.H820H . . . RP1L1 94137 broad.mit.edu 36 8 10518024 10518024 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178857 exon2 c.C98A p.A33D . . . LRP12 29967 broad.mit.edu 36 8 105578385 105578385 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013437 exon5 c.T1571C p.F524S . . . C8orf74 203076 broad.mit.edu 36 8 10595385 10595385 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040032 exon4 c.G879A p.R293R . . . PKHD1L1 93035 broad.mit.edu 36 8 110526842 110526842 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177531 exon38 c.C5568A p.F1856L . . . PKHD1L1 93035 broad.mit.edu 36 8 110530880 110530880 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177531 exon40 c.C6163A p.P2055T . . . CSMD3 114788 broad.mit.edu 36 8 113771381 113771381 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198123 exon14 c.C2047T p.R683C . . . GATA4 2626 broad.mit.edu 36 8 11643918 11643918 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002052 exon3 c.C698T p.T233M . . . TRPS1 7227 broad.mit.edu 36 8 116701172 116701172 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014112 exon3 c.T328C p.F110L . . . SLC30A8 169026 broad.mit.edu 36 8 118252506 118252506 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173851 exon7 c.C882T p.V294V . . . EXT1 2131 broad.mit.edu 36 8 119192159 119192159 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000127 exon1 c.G308A p.C103Y . . . DEPDC6 64798 broad.mit.edu 36 8 121009900 121009900 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022783 exon2 c.G202T p.E68X . . . COL14A1 7373 broad.mit.edu 36 8 121336735 121336735 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021110 exon23 c.G2828A p.R943H . . . COL14A1 7373 broad.mit.edu 36 8 121426798 121426798 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021110 exon45 c.A4892G p.H1631R . . . MTBP 27085 broad.mit.edu 36 8 121538087 121538087 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022045 exon7 c.G743T p.R248I . . . ZHX2 22882 broad.mit.edu 36 8 124034681 124034681 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014943 exon3 c.C1750T p.R584X . . . TATDN1 83940 broad.mit.edu 36 8 125590049 125590049 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146160 exon5 c.C310T p.R104X . . . NDUFB9 4715 broad.mit.edu 36 8 125628512 125628512 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005005 exon3 c.C385T p.R129W . . . SQLE 6713 broad.mit.edu 36 8 126103206 126103206 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003129 exon11 c.G1563A p.W521X . . . TRIB1 10221 broad.mit.edu 36 8 126514797 126514797 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025195 exon2 c.G417A p.S139S . . . DLC1 10395 broad.mit.edu 36 8 13001481 13001481 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182643 exon9 c.C2736T p.H912H . . . GSDMC 56169 broad.mit.edu 36 8 130858893 130858893 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031415 exon2 c.G123T p.K41N . . . ADCY8 114 broad.mit.edu 36 8 131862087 131862087 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001115 exon18 c.G3487T p.G1163X . . . EFR3A 23167 broad.mit.edu 36 8 133077843 133077843 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015137 exon19 c.C2074T p.R692X . . . PHF20L1 51105 broad.mit.edu 36 8 133924057 133924057 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016018 exon19 c.G2503T p.E835X . . . TG 7038 broad.mit.edu 36 8 133981739 133981739 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003235 exon15 c.C3406T p.R1136W . . . DLC1 10395 broad.mit.edu 36 8 13401286 13401286 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182643 exon2 c.G666T p.E222D . . . DLC1 10395 broad.mit.edu 36 8 13401449 13401449 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182643 exon2 c.G503A p.G168D . . . TG 7038 broad.mit.edu 36 8 134015096 134015096 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003235 exon24 c.C4925T p.S1642F . . . TG 7038 broad.mit.edu 36 8 134099209 134099209 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003235 exon38 c.C6567A p.I2189I . . . WISP1 8840 broad.mit.edu 36 8 134302172 134302172 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003882 exon3 c.C516T p.R172R . . . FAM135B 51059 broad.mit.edu 36 8 139249432 139249432 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015912 exon12 c.G1146T p.S382S . . . FAM135B 51059 broad.mit.edu 36 8 139449377 139449377 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015912 exon2 c.C32T p.S11L . . . COL22A1 169044 broad.mit.edu 36 8 139670836 139670836 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152888 exon65 c.G4723T p.D1575Y . . . COL22A1 169044 broad.mit.edu 36 8 139843852 139843852 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152888 exon17 c.G1843A p.D615N . . . COL22A1 169044 broad.mit.edu 36 8 139902828 139902828 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152888 exon7 c.C978A p.I326I . . . TRAPPC9 83696 broad.mit.edu 36 8 141379860 141379860 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160372 exon11 c.G1658A p.R553Q . . . SGCZ 137868 broad.mit.edu 36 8 14225987 14225987 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139167 exon3 c.G332A p.R111Q . . . GML 2765 broad.mit.edu 36 8 143919643 143919643 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002066 exon3 c.C181T p.R61C . . . CYP11B2 1585 broad.mit.edu 36 8 143990402 143990402 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000498 exon9 c.A1508C p.N503T . . . SGCZ 137868 broad.mit.edu 36 8 14456723 14456723 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139167 exon2 c.T123G p.I41M . . . ZNF623 9831 broad.mit.edu 36 8 144803188 144803188 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014789 exon1 c.G3T p.M1I . . . ZNF623 9831 broad.mit.edu 36 8 144804360 144804360 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014789 exon1 c.G1175A p.R392Q . . . PLEC 5339 broad.mit.edu 36 8 145072976 145072976 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201383 exon30 c.C4020A p.F1340L . . . ZNF251 90987 broad.mit.edu 36 8 145918524 145918524 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138367 exon5 c.C1330T p.R444W . . . ZNF7 7553 broad.mit.edu 36 8 146038189 146038189 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003416 exon5 c.G893T p.R298I . . . ZNF16 7564 broad.mit.edu 36 8 146127547 146127547 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006958 exon3 c.G1430A p.R477Q . . . DLGAP2 9228 broad.mit.edu 36 8 1568562 1568562 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004745 exon5 c.G1513A p.E505K . . . MSR1 4481 broad.mit.edu 36 8 16070629 16070629 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138716 exon4 c.C339A p.V113V . . . EFHA2 286097 broad.mit.edu 36 8 17000340 17000340 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181723 exon9 c.A891G p.V297V . . . MTUS1 57509 broad.mit.edu 36 8 17617617 17617617 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001925 exon4 c.C2361A p.S787S . . . PCM1 5108 broad.mit.edu 36 8 17859390 17859390 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006197 exon13 c.G1866T p.E622D . . . PCM1 5108 broad.mit.edu 36 8 17866360 17866360 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006197 exon18 c.G2658A p.T886T . . . ZNF596 169270 broad.mit.edu 36 8 183748 183748 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042416 exon4 c.C166T p.L56F . . . ZNF596 169270 broad.mit.edu 36 8 186126 186126 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042416 exon6 c.G1279T p.A427S . . . ARHGEF10 9639 broad.mit.edu 36 8 1881103 1881103 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014629 exon27 c.C3272T p.A1091V . . . SH2D4A 63898 broad.mit.edu 36 8 19221465 19221465 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022071 exon2 c.G127T p.E43X . . . LPL 4023 broad.mit.edu 36 8 19863927 19863927 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000237 exon9 c.G1344T p.E448D . . . SLC18A1 6570 broad.mit.edu 36 8 20049055 20049055 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003053 exon15 c.G1458T p.E486D . . . SLC18A1 6570 broad.mit.edu 36 8 20052496 20052496 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003053 exon11 c.G1055A p.G352D . . . MYOM2 9172 broad.mit.edu 36 8 2051300 2051300 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003970 exon26 c.G3322T p.D1108Y . . . RHOBTB2 23221 broad.mit.edu 36 8 22918061 22918061 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160036 exon4 c.G235A p.D79N . . . CHMP7 91782 broad.mit.edu 36 8 23171828 23171828 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152272 exon7 c.G881A p.R294H . . . LOXL2 4017 broad.mit.edu 36 8 23241914 23241914 + Missense_Mutation SNP G A A rs4602894 byHapMap TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002318 exon6 c.C1076T p.S359L . . . ADAMDEC1 27299 broad.mit.edu 36 8 24309221 24309221 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145272 exon4 c.C170A p.S57Y . . . NEFM 4741 broad.mit.edu 36 8 24830721 24830721 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105541 exon3 c.C320T p.S107F . . . NEFL 4747 broad.mit.edu 36 8 24867670 24867670 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006158 exon2 c.G1111T p.E371X . . . NEFL 4747 broad.mit.edu 36 8 24869265 24869265 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006158 exon1 c.G682A p.E228K . . . DOCK5 80005 broad.mit.edu 36 8 25276533 25276533 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024940 exon29 c.C3003A p.V1001V . . . CDCA2 157313 broad.mit.edu 36 8 25393507 25393507 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152562 exon8 c.C982T p.R328C . . . CHRNA2 1135 broad.mit.edu 36 8 27377247 27377247 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000742 exon6 c.G630T p.K210N . . . SCARA3 51435 broad.mit.edu 36 8 27572666 27572666 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182826 exon5 c.G1060A p.E354K . . . C8orf80 389643 broad.mit.edu 36 8 27936837 27936837 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010906 exon19 c.G2307T p.E769D . . . C8orf80 389643 broad.mit.edu 36 8 27944696 27944696 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010906 exon15 c.A1891C p.N631H . . . CSMD1 64478 broad.mit.edu 36 8 2823623 2823623 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon55 c.G8485T p.E2829X . . . FZD3 7976 broad.mit.edu 36 8 28441295 28441295 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145866 exon4 c.G1099A p.D367N . . . CSMD1 64478 broad.mit.edu 36 8 2963360 2963360 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon42 c.G6399T p.Q2133H . . . CSMD1 64478 broad.mit.edu 36 8 3059505 3059505 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon30 c.T4789C p.S1597P . . . CSMD1 64478 broad.mit.edu 36 8 3059569 3059569 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon30 c.G4725T p.K1575N . . . TEX15 56154 broad.mit.edu 36 8 30821588 30821588 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031271 exon1 c.C4488A p.I1496I . . . TEX15 56154 broad.mit.edu 36 8 30823035 30823035 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031271 exon1 c.C3041A p.S1014Y . . . NRG1 3084 broad.mit.edu 36 8 31617676 31617676 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013962 exon1 c.G634A p.D212N . . . CSMD1 64478 broad.mit.edu 36 8 3244383 3244383 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon16 c.C2343A p.F781L . . . CSMD1 64478 broad.mit.edu 36 8 3253147 3253147 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon14 c.T1753C p.F585L . . . DUSP26 78986 broad.mit.edu 36 8 33569163 33569163 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024025 exon4 c.C546A p.V182V . . . UNC5D 137970 broad.mit.edu 36 8 35526431 35526431 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080872 exon2 c.T183C p.D61D . . . CSMD1 64478 broad.mit.edu 36 8 3553361 3553361 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon7 c.G992A p.S331N . . . KCNU1 157855 broad.mit.edu 36 8 36781946 36781946 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031836 exon4 c.C453A p.F151L . . . KCNU1 157855 broad.mit.edu 36 8 36899275 36899275 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031836 exon24 c.C2706T p.S902S . . . ASH2L 9070 broad.mit.edu 36 8 38105049 38105049 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105214 exon11 c.C967T p.R323W . . . LSM1 27257 broad.mit.edu 36 8 38140383 38140383 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014462 exon4 c.C364A p.L122I . . . BAG4 9530 broad.mit.edu 36 8 38186794 38186794 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004874 exon5 c.C1000A p.L334I . . . MYST3 7994 broad.mit.edu 36 8 41914082 41914082 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099413 exon17 c.C3201T p.I1067I . . . MYST3 7994 broad.mit.edu 36 8 42025417 42025417 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099413 exon3 c.G236A p.R79Q . . . CHRNA6 8973 broad.mit.edu 36 8 42730716 42730716 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004198 exon5 c.C783A p.V261V . . . FNTA 2339 broad.mit.edu 36 8 43038449 43038449 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002027 exon3 c.G335T p.R112I . . . HGSNAT 138050 broad.mit.edu 36 8 43121310 43121310 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152419 exon2 c.G181T p.E61X . . . HGSNAT 138050 broad.mit.edu 36 8 43152413 43152413 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152419 exon10 c.G891T p.M297I . . . HGSNAT 138050 broad.mit.edu 36 8 43172169 43172169 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152419 exon17 c.C1643A p.S548Y . . . KIAA0146 23514 broad.mit.edu 36 8 48369075 48369075 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080394 exon5 c.T428C p.F143S . . . PRKDC 5591 broad.mit.edu 36 8 48972290 48972290 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081640 exon30 c.C3582T p.F1194F . . . ATP6V1H 51606 broad.mit.edu 36 8 54847139 54847139 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015941 exon10 c.C1012A p.L338I . . . RP1 6101 broad.mit.edu 36 8 55696223 55696223 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006269 exon2 c.C144T p.F48F . . . RP1 6101 broad.mit.edu 36 8 55704808 55704808 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006269 exon4 c.G5813A p.R1938H . . . PLAG1 5324 broad.mit.edu 36 8 57241593 57241593 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114635 exon3 c.T1020G p.F340L . . . PLAG1 5324 broad.mit.edu 36 8 57242194 57242194 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114635 exon3 c.T419G p.F140C . . . SDR16C5 195814 broad.mit.edu 36 8 57391456 57391456 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138969 exon2 c.C5A p.S2Y . . . FAM110B 90362 broad.mit.edu 36 8 59221946 59221946 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147189 exon5 c.G603A p.S201S . . . TOX 9760 broad.mit.edu 36 8 59890782 59890782 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014729 exon7 c.C1061T p.S354L . . . TOX 9760 broad.mit.edu 36 8 59926915 59926915 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014729 exon4 c.C415T p.P139S . . . ERICH1 157697 broad.mit.edu 36 8 613851 613851 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207332 exon4 c.G501T p.K167N . . . CHD7 55636 broad.mit.edu 36 8 61905447 61905447 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017780 exon15 c.C3535A p.Q1179K . . . MCPH1 79648 broad.mit.edu 36 8 6289724 6289724 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024596 exon8 c.G1073T p.R358I . . . YTHDF3 253943 broad.mit.edu 36 8 64262584 64262584 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152758 exon4 c.G1460A p.R487H . . . AGPAT5 55326 broad.mit.edu 36 8 6553801 6553801 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018361 exon1 c.T204G p.N68K . . . ADHFE1 137872 broad.mit.edu 36 8 67535170 67535170 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144650 exon13 c.C1236T p.F412F . . . C8orf45 157777 broad.mit.edu 36 8 67953643 67953643 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173518 exon7 c.G644A p.R215H . . . CSPP1 79848 broad.mit.edu 36 8 68186772 68186772 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024790 exon9 c.C1132T p.R378X . . . CSPP1 79848 broad.mit.edu 36 8 68228896 68228896 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024790 exon17 c.G2197T p.E733X . . . ARFGEF1 10565 broad.mit.edu 36 8 68340811 68340811 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006421 exon14 c.G2107T p.E703X . . . SLCO5A1 81796 broad.mit.edu 36 8 70907197 70907197 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030958 exon2 c.C266T p.S89L . . . NCOA2 10499 broad.mit.edu 36 8 71201766 71201766 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006540 exon19 c.A3752G p.Q1251R . . . TRPA1 8989 broad.mit.edu 36 8 73111122 73111122 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007332 exon21 c.T2510G p.I837S . . . TRPA1 8989 broad.mit.edu 36 8 73146606 73146606 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007332 exon2 c.G162T p.K54N . . . JPH1 56704 broad.mit.edu 36 8 75389704 75389704 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020647 exon2 c.C1086T p.G362G . . . PI15 51050 broad.mit.edu 36 8 75900191 75900191 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015886 exon2 c.C152T p.A51V . . . ZFHX4 79776 broad.mit.edu 36 8 77779589 77779589 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024721 exon2 c.G711T p.E237D . . . ZFHX4 79776 broad.mit.edu 36 8 77779866 77779866 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024721 exon2 c.G988T p.E330X . . . ZFHX4 79776 broad.mit.edu 36 8 77853196 77853196 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024721 exon4 c.C3291T p.I1097I . . . ZFHX4 79776 broad.mit.edu 36 8 77927593 77927593 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024721 exon10 c.T5881C p.L1961L . . . ZFHX4 79776 broad.mit.edu 36 8 77929172 77929172 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024721 exon10 c.C7460T p.P2487L . . . PEX2 5828 broad.mit.edu 36 8 78058079 78058079 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000318 exon4 c.C891T p.I297I . . . FAM164A 51101 broad.mit.edu 36 8 79764074 79764074 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016010 exon5 c.A415C p.N139H . . . SNX16 64089 broad.mit.edu 36 8 82890140 82890140 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152837 exon4 c.C569A p.P190Q . . . ATP6V0D2 245972 broad.mit.edu 36 8 87180435 87180435 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152565 exon1 c.C112T p.Q38X . . . FAM82B 51115 broad.mit.edu 36 8 87569979 87569979 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016033 exon3 c.G253T p.E85X . . . CNGB3 54714 broad.mit.edu 36 8 87710288 87710288 + Nonsense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019098 exon12 c.T1455G p.Y485X . . . CNGB3 54714 broad.mit.edu 36 8 87748335 87748335 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019098 exon6 c.C786T p.I262I . . . DCAF4L2 138009 broad.mit.edu 36 8 88955098 88955098 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152418 exon1 c.G218A p.R73Q . . . TMEM55A 55529 broad.mit.edu 36 8 92078122 92078122 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018710 exon6 c.G566A p.R189Q . . . PDP1 54704 broad.mit.edu 36 8 95003940 95003940 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001161779 exon3 c.C552A p.L184L . . . GEM 2669 broad.mit.edu 36 8 95341847 95341847 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181702 exon2 c.C61T p.R21C . . . RAD54B 25788 broad.mit.edu 36 8 95468407 95468407 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012415 exon11 c.G1966A p.E656K . . . TP53INP1 94241 broad.mit.edu 36 8 96011978 96011978 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033285 exon4 c.C628T p.R210C . . . PLEKHF2 79666 broad.mit.edu 36 8 96235617 96235617 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024613 exon2 c.T169G p.L57V . . . MIR124-2 406908 broad.mit.edu 36 8 65454328 65454328 + RNA SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . LHX3 8022 broad.mit.edu 36 9 138229353 138229354 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_178138 exon6 c.833_834insG p.E278fs . . . NR4A3 8013 broad.mit.edu 36 9 101665888 101665888 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006981 exon8 c.G1799A p.R600H . . . TEX10 54881 broad.mit.edu 36 9 102149359 102149359 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017746 exon3 c.G331T p.D111Y . . . GRIN3A 116443 broad.mit.edu 36 9 103472730 103472730 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133445 exon3 c.C1785T p.F595F . . . CYLC2 1539 broad.mit.edu 36 9 104797497 104797497 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001340 exon1 c.G14T p.R5I . . . CYLC2 1539 broad.mit.edu 36 9 104807693 104807693 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001340 exon5 c.A959C p.K320T . . . OR13C3 138803 broad.mit.edu 36 9 106338777 106338777 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001961 exon1 c.C139A p.L47I . . . OR13C3 138803 broad.mit.edu 36 9 106338883 106338883 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001961 exon1 c.C33A p.F11L . . . OR13C9 286362 broad.mit.edu 36 9 106419626 106419626 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001956 exon1 c.G681T p.K227N . . . OR13D1 286365 broad.mit.edu 36 9 106497372 106497372 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004484 exon1 c.C849A p.F283L . . . ABCA1 19 broad.mit.edu 36 9 106685191 106685191 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005502 exon5 c.A371G p.D124G . . . EPB41L4B 54566 broad.mit.edu 36 9 111005811 111005811 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019114 exon19 c.G1899A p.P633P . . . SVEP1 79987 broad.mit.edu 36 9 112206635 112206635 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153366 exon39 c.G9459A p.T3153T . . . SVEP1 79987 broad.mit.edu 36 9 112232420 112232420 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153366 exon33 c.T5485C p.C1829R . . . SVEP1 79987 broad.mit.edu 36 9 112234042 112234042 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153366 exon32 c.A5327G p.Y1776C . . . KIAA0368 23392 broad.mit.edu 36 9 113194916 113194916 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080398 exon29 c.A3579C p.Q1193H . . . KIAA0368 23392 broad.mit.edu 36 9 113224061 113224061 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080398 exon16 c.A1950G p.R650R . . . KIAA0368 23392 broad.mit.edu 36 9 113286818 113286818 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080398 exon1 c.A29G p.K10R . . . ZNF483 158399 broad.mit.edu 36 9 113344832 113344832 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133464 exon6 c.G1796T p.R599I . . . UGCG 7357 broad.mit.edu 36 9 113734370 113734370 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003358 exon8 c.C924T p.H308H . . . SUSD1 64420 broad.mit.edu 36 9 113913786 113913786 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022486 exon8 c.G1140A p.S380S . . . ROD1 9991 broad.mit.edu 36 9 114026239 114026239 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163790 exon14 c.C1530A p.F510L . . . TNC 3371 broad.mit.edu 36 9 116888210 116888210 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002160 exon3 c.C1621T p.R541C . . . CDK5RAP2 55755 broad.mit.edu 36 9 122245761 122245761 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018249 exon23 c.G3106A p.D1036N . . . PHF19 26147 broad.mit.edu 36 9 122671817 122671817 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009936 exon5 c.G592A p.A198T . . . TTLL11 158135 broad.mit.edu 36 9 123833901 123833901 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001139442 exon3 c.G885A p.Q295Q . . . OR1J4 26219 broad.mit.edu 36 9 124321955 124321955 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004452 exon1 c.T715C p.S239P . . . OR1N1 138883 broad.mit.edu 36 9 124328980 124328980 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012363 exon1 c.C414A p.V138V . . . OR1N2 138882 broad.mit.edu 36 9 124356095 124356095 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004457 exon1 c.T826C p.Y276H . . . OR1L6 392390 broad.mit.edu 36 9 124552144 124552144 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004453 exon1 c.A197G p.N66S . . . OR1K1 392392 broad.mit.edu 36 9 124602339 124602339 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080859 exon1 c.C117T p.S39S . . . GPR21 2844 broad.mit.edu 36 9 124837313 124837313 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005294 exon1 c.G647A p.R216H . . . STRBP 55342 broad.mit.edu 36 9 124981162 124981162 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171137 exon4 c.A127C p.K43Q . . . OLFML2A 169611 broad.mit.edu 36 9 126603642 126603642 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182487 exon5 c.C798T p.S266S . . . WDR38 401551 broad.mit.edu 36 9 126657806 126657806 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001045476 exon3 c.G263A p.R88H . . . RABEPK 10244 broad.mit.edu 36 9 127022745 127022745 + Silent SNP C T T rs1045383 unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005833 exon5 c.C471T p.G157G . . . FAM125B 89853 broad.mit.edu 36 9 128188680 128188680 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011703 exon4 c.T331C p.L111L . . . LRSAM1 90678 broad.mit.edu 36 9 129303135 129303135 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005373 exon25 c.C1938T p.V646V . . . NAIF1 203245 broad.mit.edu 36 9 129868727 129868727 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_197956 exon1 c.G475A p.A159T . . . DNM1 1759 broad.mit.edu 36 9 130022343 130022343 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005336 exon6 c.G751A p.A251T . . . C9orf119 375757 broad.mit.edu 36 9 130078274 130078274 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040011 exon1 c.G29T p.W10L . . . TRUB2 26995 broad.mit.edu 36 9 130111940 130111940 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015679 exon8 c.C706T p.R236W . . . FNBP1 23048 broad.mit.edu 36 9 131727170 131727170 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015033 exon9 c.C877T p.R293C . . . FNBP1 23048 broad.mit.edu 36 9 131780675 131780675 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015033 exon4 c.G235A p.E79K . . . FAM78A 286336 broad.mit.edu 36 9 133141379 133141379 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033387 exon1 c.T9C p.G3G . . . POMT1 10585 broad.mit.edu 36 9 133384640 133384640 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007171 exon16 c.G1596A p.A532A . . . MED27 9442 broad.mit.edu 36 9 133759171 133759171 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004269 exon5 c.C603T p.I201I . . . SETX 23064 broad.mit.edu 36 9 134142343 134142343 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015046 exon22 c.G6860A p.R2287Q . . . TTF1 7270 broad.mit.edu 36 9 134241186 134241186 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007344 exon11 c.G2655A p.A885A . . . C9orf98 158067 broad.mit.edu 36 9 134692230 134692230 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152572 exon8 c.G589A p.E197K . . . SURF6 6838 broad.mit.edu 36 9 135190415 135190415 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006753 exon3 c.G353A p.R118Q . . . SURF4 6836 broad.mit.edu 36 9 135224025 135224025 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033161 exon2 c.G166A p.D56N . . . RXRA 6256 broad.mit.edu 36 9 136468220 136468220 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002957 exon10 c.G1328A p.G443E . . . FCN2 2220 broad.mit.edu 36 9 136916912 136916912 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004108 exon5 c.G308A p.R103H . . . PMPCA 23203 broad.mit.edu 36 9 138426791 138426791 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015160 exon3 c.A303C p.E101D . . . SEC16A 9919 broad.mit.edu 36 9 138470018 138470018 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014866 exon20 c.C5713T p.P1905S . . . UAP1L1 91373 broad.mit.edu 36 9 139094342 139094342 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207309 exon6 c.A1105G p.N369D . . . FREM1 158326 broad.mit.edu 36 9 14730164 14730164 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144966 exon37 c.G6323A p.R2108K . . . FREM1 158326 broad.mit.edu 36 9 14737388 14737388 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144966 exon34 c.T5883G p.S1961R . . . FREM1 158326 broad.mit.edu 36 9 14774562 14774562 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144966 exon25 c.G4248A p.T1416T . . . BNC2 54796 broad.mit.edu 36 9 16426658 16426658 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017637 exon6 c.C1534T p.R512W . . . ADAMTSL1 92949 broad.mit.edu 36 9 18464288 18464288 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052866 exon1 c.C58T p.L20F . . . ADAMTSL1 92949 broad.mit.edu 36 9 18743454 18743454 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040272 exon16 c.C2165T p.A722V . . . HAUS6 54801 broad.mit.edu 36 9 19048123 19048123 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017645 exon16 c.T2642C p.F881S . . . SLC24A2 25769 broad.mit.edu 36 9 19776611 19776611 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020344 exon2 c.G254T p.R85I . . . KLHL9 55958 broad.mit.edu 36 9 21323610 21323610 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018847 exon1 c.G1249T p.E417X . . . IFNA6 3443 broad.mit.edu 36 9 21340876 21340876 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021002 exon1 c.C11A p.P4H . . . IFNA8 3445 broad.mit.edu 36 9 21399499 21399499 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002170 exon1 c.C324A p.F108L . . . ELAVL2 1993 broad.mit.edu 36 9 23721022 23721022 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171197 exon3 c.A331C p.K111Q . . . TOPORS 10210 broad.mit.edu 36 9 32534014 32534014 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195622 exon2 c.C314A p.S105Y . . . NFX1 4799 broad.mit.edu 36 9 33284462 33284462 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147134 exon2 c.G70T p.E24X . . . NOL6 65083 broad.mit.edu 36 9 33454941 33454941 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022917 exon21 c.C2715A p.F905L . . . NOL6 65083 broad.mit.edu 36 9 33457240 33457240 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022917 exon14 c.C1746A p.F582L . . . PRSS3 5646 broad.mit.edu 36 9 33785594 33785594 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002771 exon1 c.C23T p.A8V . . . UBE2R2 54926 broad.mit.edu 36 9 33890191 33890191 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017811 exon3 c.C284T p.S95L . . . CCL27 10850 broad.mit.edu 36 9 34651979 34651979 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006664 exon3 c.C301A p.P101T . . . HINT2 84681 broad.mit.edu 36 9 35803656 35803656 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032593 exon2 c.C207A p.L69L . . . DOCK8 81704 broad.mit.edu 36 9 404884 404884 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190458 exon27 c.C3333T p.I1111I . . . ZNF658 26149 broad.mit.edu 36 9 40764525 40764525 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033160 exon5 c.A750C p.K250N . . . KIAA2026 158358 broad.mit.edu 36 9 5958511 5958511 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017969 exon3 c.C1720T p.R574C . . . TRPM3 80036 broad.mit.edu 36 9 72420805 72420805 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007471 exon17 c.C2329A p.L777M . . . TMC1 117531 broad.mit.edu 36 9 74505316 74505316 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138691 exon8 c.G299T p.R100I . . . ALDH1A1 216 broad.mit.edu 36 9 74706014 74706014 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000689 exon13 c.G1436T p.G479V . . . RORB 6096 broad.mit.edu 36 9 76439446 76439446 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006914 exon3 c.A173G p.N58S . . . TRPM6 140803 broad.mit.edu 36 9 76580743 76580743 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177310 exon24 c.G3264T p.M1088I . . . TRPM6 140803 broad.mit.edu 36 9 76692569 76692569 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017662 exon1 c.G24A p.E8E . . . C9orf41 138199 broad.mit.edu 36 9 76803375 76803375 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152420 exon5 c.C869A p.S290Y . . . PRUNE2 158471 broad.mit.edu 36 9 78658931 78658931 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015225 exon2 c.G50A p.R17H . . . VPS13A 23230 broad.mit.edu 36 9 79186744 79186744 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018037 exon67 c.G8993A p.R2998Q . . . TLE4 7091 broad.mit.edu 36 9 81525012 81525012 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007005 exon16 c.A1822T p.N608Y . . . FAM75D1 389763 broad.mit.edu 36 9 83798500 83798500 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001670 exon4 c.G3295A p.E1099K . . . PTPRD 5789 broad.mit.edu 36 9 8482898 8482898 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002839 exon27 c.C2431T p.R811C . . . PTPRD 5789 broad.mit.edu 36 9 8626706 8626706 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040712 exon2 c.G203T p.R68I . . . NTRK2 4915 broad.mit.edu 36 9 86549745 86549745 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018066 exon11 c.G1233A p.T411T . . . AGTPBP1 23287 broad.mit.edu 36 9 87394372 87394372 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015239 exon20 c.C2493A p.I831I . . . NAA35 60560 broad.mit.edu 36 9 87763298 87763298 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024635 exon4 c.C250A p.L84I . . . DAPK1 1612 broad.mit.edu 36 9 89444126 89444126 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004938 exon5 c.A461C p.K154T . . . DIRAS2 54769 broad.mit.edu 36 9 92415398 92415398 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017594 exon2 c.A532G p.I178V . . . AUH 549 broad.mit.edu 36 9 93023072 93023072 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001698 exon7 c.G679A p.A227T . . . IARS 3376 broad.mit.edu 36 9 94082905 94082905 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013417 exon7 c.T689G p.L230R . . . OMD 4958 broad.mit.edu 36 9 94218812 94218812 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005014 exon2 c.G850T p.E284X . . . OMD 4958 broad.mit.edu 36 9 94218980 94218980 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005014 exon2 c.C682T p.P228S . . . FAM120A 23196 broad.mit.edu 36 9 95299625 95299625 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014612 exon4 c.G856A p.V286I . . . PHF2 5253 broad.mit.edu 36 9 95469276 95469276 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005392 exon17 c.G2281A p.A761T . . . PTPDC1 138639 broad.mit.edu 36 9 95887359 95887359 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152422 exon2 c.T244C p.L82L . . . FAM22F 54754 broad.mit.edu 36 9 96120761 96120761 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017561 exon7 c.C2078A p.A693D . . . FBP2 8789 broad.mit.edu 36 9 96395816 96395816 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003837 exon1 c.G14A p.S5N . . . PTCH1 5727 broad.mit.edu 36 9 97269283 97269283 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083605 exon15 c.C2043A p.V681V . . . C9orf102 375748 broad.mit.edu 36 9 97724432 97724432 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010895 exon8 c.A1357C p.K453Q . . . DMRT3 58524 broad.mit.edu 36 9 980942 980942 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021240 exon2 c.C1356T p.T452T . . . CDC14B 8555 broad.mit.edu 36 9 98325454 98325454 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077181 exon11 c.A1044G p.Q348Q . . . ZNF510 22869 broad.mit.edu 36 9 98561074 98561074 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014930 exon6 c.G1859T p.R620I . . . LOC57653 57653 broad.mit.edu 36 9 99156716 99156716 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020893 exon23 c.C3179A p.S1060X . . . CORO2A 7464 broad.mit.edu 36 9 99928682 99928682 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003389 exon11 c.C1416T p.F472F . . . TMEM35 59353 broad.mit.edu 36 X 100236537 100236537 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021637 exon2 c.G440A p.G147E . . . BTK 695 broad.mit.edu 36 X 100497787 100497787 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000061 exon15 c.G1475A p.R492H . . . GPRASP1 9737 broad.mit.edu 36 X 101798579 101798579 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099411 exon3 c.T3082C p.S1028P . . . GPRASP2 114928 broad.mit.edu 36 X 101858251 101858251 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004051 exon5 c.G1798T p.E600X . . . TMEM31 203562 broad.mit.edu 36 X 102855197 102855197 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182541 exon3 c.G122A p.R41Q . . . NRK 203447 broad.mit.edu 36 X 105065020 105065020 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198465 exon20 c.T3427G p.F1143V . . . TBC1D8B 54885 broad.mit.edu 36 X 105956081 105956081 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198881 exon6 c.C993T p.S331S . . . VSIG1 340547 broad.mit.edu 36 X 107187946 107187946 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182607 exon2 c.G72T p.V24V . . . COL4A5 1287 broad.mit.edu 36 X 107716573 107716573 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000495 exon19 c.G1105T p.E369X . . . IRS4 8471 broad.mit.edu 36 X 107863055 107863055 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003604 exon1 c.C3176A p.S1059Y . . . IRS4 8471 broad.mit.edu 36 X 107863445 107863445 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003604 exon1 c.G2786T p.R929I . . . GUCY2F 2986 broad.mit.edu 36 X 108522874 108522874 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001522 exon13 c.T2491A p.Y831N . . . GUCY2F 2986 broad.mit.edu 36 X 108583693 108583693 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001522 exon4 c.G1084A p.A362T . . . ACSL4 2182 broad.mit.edu 36 X 108789257 108789257 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004458 exon15 c.C1837T p.R613X . . . TMEM164 84187 broad.mit.edu 36 X 109197272 109197272 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032227 exon3 c.C432T p.V144V . . . AMMECR1 9949 broad.mit.edu 36 X 109332396 109332396 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171689 exon6 c.G355T p.E119X . . . PAK3 5063 broad.mit.edu 36 X 110292874 110292874 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128166 exon7 c.G544T p.E182X . . . DCX 1641 broad.mit.edu 36 X 110431573 110431573 + Nonstop_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178153 exon7 c.T1081C p.X361Q . . . ALG13 79868 broad.mit.edu 36 X 110817880 110817880 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018466 exon4 c.A493C p.K165Q . . . TRPC5 7224 broad.mit.edu 36 X 110977229 110977229 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012471 exon6 c.C1469T p.S490L . . . HTR2C 3358 broad.mit.edu 36 X 113988972 113988972 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000868 exon5 c.C500T p.S167L . . . KLHL13 90293 broad.mit.edu 36 X 116927816 116927816 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168300 exon5 c.A824G p.N275S . . . WDR44 54521 broad.mit.edu 36 X 117428934 117428934 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184966 exon11 c.C1646T p.S549L . . . DOCK11 139818 broad.mit.edu 36 X 117628403 117628403 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144658 exon28 c.C3090T p.F1030F . . . ATP1B4 23439 broad.mit.edu 36 X 119397509 119397509 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142447 exon8 c.G1066T p.E356X . . . CUL4B 8450 broad.mit.edu 36 X 119550310 119550310 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079872 exon18 c.G2434T p.E812X . . . GRIA3 2892 broad.mit.edu 36 X 122214878 122214878 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007325 exon3 c.C312A p.F104L . . . DCAF12L2 340578 broad.mit.edu 36 X 125127089 125127089 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013628 exon1 c.G500A p.G167D . . . ACTRT1 139741 broad.mit.edu 36 X 127012749 127012749 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138289 exon1 c.G1118T p.R373I . . . SMARCA1 6594 broad.mit.edu 36 X 128451766 128451766 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003069 exon15 c.G1900T p.E634X . . . SMARCA1 6594 broad.mit.edu 36 X 128478031 128478031 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003069 exon3 c.G386A p.R129Q . . . IGSF1 3547 broad.mit.edu 36 X 130237198 130237198 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170962 exon15 c.A3092G p.Y1031C . . . SAGE1 55511 broad.mit.edu 36 X 134820377 134820377 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018666 exon16 c.C2002A p.L668M . . . GPR112 139378 broad.mit.edu 36 X 135257448 135257448 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153834 exon6 c.A3917C p.K1306T . . . GPR112 139378 broad.mit.edu 36 X 135297675 135297675 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153834 exon16 c.C7887A p.F2629L . . . GPR112 139378 broad.mit.edu 36 X 135324037 135324037 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153834 exon25 c.G9090T p.K3030N . . . CD40LG 959 broad.mit.edu 36 X 135558121 135558121 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000074 exon1 c.A48G p.G16G . . . CD40LG 959 broad.mit.edu 36 X 135568868 135568868 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000074 exon5 c.A414G p.L138L . . . ARHGEF6 9459 broad.mit.edu 36 X 135623165 135623165 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004840 exon7 c.G763T p.E255X . . . GPR101 83550 broad.mit.edu 36 X 135940141 135940141 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054021 exon1 c.C1359A p.V453V . . . F9 2158 broad.mit.edu 36 X 138471695 138471695 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000133 exon8 c.C1185A p.F395L . . . MCF2 4168 broad.mit.edu 36 X 138526113 138526113 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099855 exon12 c.G1365T p.E455D . . . ATP11C 286410 broad.mit.edu 36 X 138708102 138708102 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010986 exon10 c.G862T p.E288X . . . MAGEC1 9947 broad.mit.edu 36 X 140822311 140822311 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005462 exon4 c.C1455A p.S485S . . . MAGEC1 9947 broad.mit.edu 36 X 140822903 140822903 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005462 exon4 c.C2047T p.P683S . . . SPANXN2 494119 broad.mit.edu 36 X 142622858 142622858 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009615 exon2 c.G486T p.Q162H . . . UBE2NL 389898 broad.mit.edu 36 X 142795125 142795125 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012989 exon1 c.G257T p.R86I . . . SLITRK2 84631 broad.mit.edu 36 X 144712639 144712639 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144006 exon3 c.C1004A p.P335H . . . FMR1NB 158521 broad.mit.edu 36 X 146895989 146895989 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152578 exon3 c.G473T p.R158I . . . AFF2 2334 broad.mit.edu 36 X 147869969 147869969 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002025 exon19 c.C3588T p.V1196V . . . MTMR1 8776 broad.mit.edu 36 X 149674939 149674939 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003828 exon14 c.C1777A p.H593N . . . GABRE 2564 broad.mit.edu 36 X 150880459 150880459 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004961 exon5 c.C598T p.L200F . . . PNMA5 114824 broad.mit.edu 36 X 151909681 151909681 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001103150 exon2 c.C1118A p.S373Y . . . DKC1 1736 broad.mit.edu 36 X 153649893 153649893 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001363 exon8 c.A763G p.S255G . . . DKC1 1736 broad.mit.edu 36 X 153657710 153657710 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001363 exon14 c.T1393C p.L465L . . . F8 2157 broad.mit.edu 36 X 153812469 153812469 + Silent SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000132 exon14 c.T2790G p.V930V . . . F8 2157 broad.mit.edu 36 X 153813076 153813076 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000132 exon14 c.C2183A p.S728Y . . . F8 2157 broad.mit.edu 36 X 153866256 153866256 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000132 exon6 c.A687G p.S229S . . . ACE2 59272 broad.mit.edu 36 X 15509325 15509325 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021804 exon9 c.G1010A p.G337E . . . TXLNG 55787 broad.mit.edu 36 X 16767911 16767911 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018360 exon9 c.G1199A p.R400H . . . PPEF1 5475 broad.mit.edu 36 X 18732075 18732075 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006240 exon14 c.G1210T p.E404X . . . SH3KBP1 30011 broad.mit.edu 36 X 19464485 19464485 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024666 exon17 c.G1858A p.D620N . . . MAP7D2 256714 broad.mit.edu 36 X 19944318 19944318 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168465 exon11 c.C1459T p.R487C . . . MBTPS2 51360 broad.mit.edu 36 X 21810548 21810548 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015884 exon11 c.C1414T p.L472L . . . ZNF645 158506 broad.mit.edu 36 X 22201311 22201311 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152577 exon1 c.G282A p.P94P . . . DCAF8L1 139425 broad.mit.edu 36 X 27907786 27907786 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017930 exon1 c.G1587A p.K529K . . . ARSE 415 broad.mit.edu 36 X 2871135 2871135 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000047 exon8 c.A1097G p.Q366R . . . IL1RAPL1 11141 broad.mit.edu 36 X 29883608 29883608 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014271 exon11 c.C1841T p.T614M . . . GK 2710 broad.mit.edu 36 X 30622509 30622509 + Silent SNP A G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128127 exon6 c.A486G p.R162R . . . DMD 1756 broad.mit.edu 36 X 32308575 32308575 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004011 exon6 c.T795G p.N265K . . . MXRA5 25878 broad.mit.edu 36 X 3239335 3239335 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015419 exon7 c.C6909A p.V2303V . . . CXorf59 286464 broad.mit.edu 36 X 35999983 35999983 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173695 exon3 c.A164C p.E55A . . . CYBB 1536 broad.mit.edu 36 X 37540272 37540272 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000397 exon6 c.C612A p.V204V . . . SYTL5 94122 broad.mit.edu 36 X 37778146 37778146 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138780 exon2 c.G60T p.M20I . . . RPGR 6103 broad.mit.edu 36 X 38063115 38063115 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000328 exon5 c.G380T p.R127I . . . OTC 5009 broad.mit.edu 36 X 38125583 38125583 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000531 exon4 c.G343A p.D115N . . . EFHC2 80258 broad.mit.edu 36 X 43986478 43986478 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025184 exon8 c.G1113T p.E371D . . . ZNF182 7569 broad.mit.edu 36 X 47720824 47720824 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006962 exon7 c.C1606A p.H536N . . . TBC1D25 4943 broad.mit.edu 36 X 48284758 48284758 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002536 exon2 c.G217A p.A73T . . . PQBP1 10084 broad.mit.edu 36 X 48644241 48644241 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005710 exon3 c.G270T p.K90N . . . KCND1 3750 broad.mit.edu 36 X 48711192 48711192 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004979 exon1 c.C431T p.A144V . . . SYP 6855 broad.mit.edu 36 X 48941144 48941144 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003179 exon3 c.C201T p.I67I . . . CACNA1F 778 broad.mit.edu 36 X 48975115 48975115 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005183 exon2 c.C244T p.R82X . . . GPR173 54328 broad.mit.edu 36 X 53123362 53123362 + Silent SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018969 exon2 c.C834A p.V278V . . . KDM5C 8242 broad.mit.edu 36 X 53262002 53262002 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004187 exon6 c.G760T p.D254Y . . . SMC1A 8243 broad.mit.edu 36 X 53423796 53423796 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006306 exon25 c.G3655A p.D1219N . . . USP51 158880 broad.mit.edu 36 X 55530600 55530600 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201286 exon2 c.G1498A p.A500T . . . USP51 158880 broad.mit.edu 36 X 55531303 55531303 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201286 exon2 c.A795G p.K265K . . . FAM123B 139285 broad.mit.edu 36 X 63327322 63327322 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152424 exon2 c.G2570A p.R857Q . . . AR 367 broad.mit.edu 36 X 66682578 66682578 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000044 exon1 c.G865A p.E289K . . . EDA 1896 broad.mit.edu 36 X 69169975 69169975 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005609 exon7 c.C796A p.L266I . . . DGAT2L6 347516 broad.mit.edu 36 X 69341675 69341675 + Silent SNP T C C novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198512 exon7 c.T1008C p.I336I . . . SLC7A3 84889 broad.mit.edu 36 X 70063136 70063136 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032803 exon10 c.G1586T p.R529I . . . MED12 9968 broad.mit.edu 36 X 70255978 70255978 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005120 exon2 c.G130T p.G44C . . . MED12 9968 broad.mit.edu 36 X 70258319 70258319 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005120 exon7 c.G1029A p.S343S . . . NLGN3 54413 broad.mit.edu 36 X 70303979 70303979 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166660 exon5 c.T1187G p.F396C . . . ZMYM3 9203 broad.mit.edu 36 X 70380544 70380544 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171162 exon21 c.C3256T p.R1086C . . . TAF1 6872 broad.mit.edu 36 X 70514903 70514903 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138923 exon7 c.C1024T p.R342C . . . OGT 8473 broad.mit.edu 36 X 70710208 70710208 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181673 exon22 c.C2950T p.R984C . . . RGAG4 340526 broad.mit.edu 36 X 71267257 71267257 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024455 exon1 c.G859T p.E287X . . . NHSL2 340527 broad.mit.edu 36 X 71275494 71275494 + Silent SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013627 exon6 c.C1371T p.Y457Y . . . PHKA1 5255 broad.mit.edu 36 X 71717619 71717619 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172436 exon30 c.C3414T p.Y1138Y . . . NAP1L2 4674 broad.mit.edu 36 X 72349992 72349992 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021963 exon1 c.C1062A p.I354I . . . KIAA2022 340533 broad.mit.edu 36 X 73877781 73877781 + Silent SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008537 exon3 c.C3336A p.I1112I . . . KIAA2022 340533 broad.mit.edu 36 X 73880331 73880331 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008537 exon3 c.G786T p.E262D . . . ATRX 546 broad.mit.edu 36 X 76776801 76776801 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000489 exon17 c.G4749T p.K1583N . . . ATRX 546 broad.mit.edu 36 X 76825651 76825651 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000489 exon9 c.G1753A p.E585K . . . ATRX 546 broad.mit.edu 36 X 76825864 76825864 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000489 exon9 c.G1540T p.D514Y . . . ATRX 546 broad.mit.edu 36 X 76826242 76826242 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000489 exon9 c.A1162C p.K388Q . . . MAGT1 84061 broad.mit.edu 36 X 77017589 77017589 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032121 exon2 c.C360T p.V120V . . . P2RY10 27334 broad.mit.edu 36 X 78103553 78103553 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198333 exon2 c.G880A p.A294T . . . TBX22 50945 broad.mit.edu 36 X 79169416 79169416 + Silent SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109878 exon7 c.G804A p.T268T . . . DACH2 117154 broad.mit.edu 36 X 85956375 85956375 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053281 exon10 c.G1566T p.E522D . . . FAM9B 171483 broad.mit.edu 36 X 8960469 8960469 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_205849 exon2 c.G62T p.R21I . . . PCDH11X 27328 broad.mit.edu 36 X 91019870 91019870 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032968 exon2 c.G1975A p.V659I . . . PCDH11X 27328 broad.mit.edu 36 X 91343096 91343096 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032968 exon3 c.C3100A p.H1034N . . . PCDH11X 27328 broad.mit.edu 36 X 91760520 91760520 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032968 exon7 c.G3969T p.L1323F . . . FAM133A 286499 broad.mit.edu 36 X 92851456 92851456 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171110 exon5 c.G382T p.G128X . . . RPA4 29935 broad.mit.edu 36 X 96026558 96026558 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013347 exon1 c.G593A p.R198H . . . DIAPH2 1730 broad.mit.edu 36 X 96389443 96389443 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006729 exon23 c.G2793T p.K931N . . . TNMD 64102 broad.mit.edu 36 X 99735978 99735978 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022144 exon4 c.T386G p.I129S . . . UTY 7404 broad.mit.edu 36 Y 13927384 13927384 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007125 exon21 c.C3053A p.S1018Y . . . PCDH11Y 83259 broad.mit.edu 36 Y 5026401 5026401 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032971 exon5 c.G749A p.R250K . . . PCDH11Y 83259 broad.mit.edu 36 Y 5026985 5026985 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3977-01A-01W-0995-10 TCGA-AA-3977-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032971 exon5 c.C1333A p.L445I . . .