Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
CCDC147	159686	broad.mit.edu	36	10	106150470	106150470	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008723	exon13	c.C1858T	p.R620C	.	.	.
CYP2E1	1571	broad.mit.edu	36	10	135197268	135197268	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000773	exon6	c.C844T	p.R282C	.	.	.
NET1	10276	broad.mit.edu	36	10	5484842	5484844	+	In_Frame_Del	DEL	GGT	-	-	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	GGT	GGT	GGT	-	GGT	GGT	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005863	exon4	c.391_393del	p.131_131del	.	.	.
ABCG4	64137	broad.mit.edu	36	11	118529986	118529986	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142505	exon3	c.C279T	p.C93C	.	.	.
TECTA	7007	broad.mit.edu	36	11	120505832	120505832	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005422	exon9	c.C2643T	p.F881F	.	.	.
NCAPD3	23310	broad.mit.edu	36	11	133559792	133559792	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015261	exon19	c.G2401A	p.A801T	.	.	.
KRTAP5-6	440023	broad.mit.edu	36	11	1675222	1675222	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012416	exon1	c.G171A	p.K57K	.	.	.
ARHGEF17	9828	broad.mit.edu	36	11	72700321	72700321	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014786	exon1	c.C2990T	p.T997M	.	.	.
RNF169	254225	broad.mit.edu	36	11	74206355	74206355	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001098638	exon4	c.C790T	p.R264C	.	.	.
MANSC1	54682	broad.mit.edu	36	12	12374684	12374685	+	Frame_Shift_Ins	INS	-	AA	AA	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018050	exon4	c.840_841insTT	p.T280fs	.	.	.
PRR4	11272	broad.mit.edu	36	12	10891057	10891057	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007244	exon3	c.C277T	p.R93X	.	.	.
CAPZA3	93661	broad.mit.edu	36	12	18782838	18782838	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033328	exon1	c.C369T	p.C123C	.	.	.
CNTN1	1272	broad.mit.edu	36	12	39639301	39639301	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175038	exon14	c.G1769T	p.R590I	.	.	.
ITGB7	3695	broad.mit.edu	36	12	51872421	51872421	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000889	exon14	c.C2115T	p.D705D	.	.	.
CLEC4C	170482	broad.mit.edu	36	12	7785344	7785344	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_203503	exon3	c.C82T	p.R28X	.	.	.
PIBF1	10464	broad.mit.edu	36	13	72380684	72380684	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006346	exon12	c.A1503C	p.E501D	.	.	.
SLITRK5	26050	broad.mit.edu	36	13	87128254	87128254	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015567	exon2	c.C2610T	p.A870A	.	.	.
ACOT4	122970	broad.mit.edu	36	14	73130264	73130265	+	Frame_Shift_Ins	INS	-	TCAA	TCAA	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152331	exon2	c.563_564insTCAA	p.L188fs	.	.	.
RIN3	79890	broad.mit.edu	36	14	92188071	92188072	+	Missense_Mutation	DNP	CT	AC	AC	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024832	exon6	c.924_925AC	.	.	.	.
RIN3	79890	broad.mit.edu	36	14	92188074	92188074	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024832	exon6	c.T927C	p.C309C	.	.	.
ACOT4	122970	broad.mit.edu	36	14	73130267	73130270	+	Frame_Shift_Del	DEL	CTTA	-	-	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	CTTA	CTTA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152331	exon2	c.566_569del	p.189_190del	.	.	.
CSK	1445	broad.mit.edu	36	15	72879876	72879877	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004383	exon6	c.533_534insG	p.A178fs	.	.	.
BUB1B	701	broad.mit.edu	36	15	38244551	38244551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001211	exon2	c.C41T	p.A14V	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49579525	49579525	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015263	exon18	c.G3188A	p.S1063N	.	.	.
KIAA1370	56204	broad.mit.edu	36	15	50688242	50688242	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019600	exon6	c.A2161C	p.N721H	.	.	.
UNC45A	55898	broad.mit.edu	36	15	89286762	89286762	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001039675	exon10	c.T734C	p.L245P	.	.	.
TMC7	79905	broad.mit.edu	36	16	18965979	18965979	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001160364	exon12	c.C1317T	p.Y439Y	.	.	.
CENPN	55839	broad.mit.edu	36	16	79611360	79611360	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018455	exon6	c.G509A	p.R170H	.	.	.
ERBB2	2064	broad.mit.edu	36	17	35133746	35133746	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005862	exon22	c.T2174C	p.L725S	 ERBB2,lung,NS,Substitution - Missense,+1 	.	.
KRTAP4-12	83755	broad.mit.edu	36	17	36533688	36533688	+	Silent	SNP	A	G	G	rs28515113	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031854	exon1	c.T213C	p.C71C	.	.	.
CUEDC1	404093	broad.mit.edu	36	17	53305171	53305171	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017949	exon5	c.A636C	p.P212P	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59372411	59372411	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000334	exon24	c.A4963T	p.K1655X	.	.	.
TP53	7157	broad.mit.edu	36	17	7514743	7514743	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000546	exon10	c.C1009T	p.R337C	 TP53,oesophagus,upper_third,Substitution - Missense,0 	.	.
NOL4	8715	broad.mit.edu	36	18	29686871	29686871	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001198546	exon10	c.G1658A	p.R553Q	.	.	.
MAST1	22983	broad.mit.edu	36	19	12840571	12840571	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014975	exon21	c.G2681A	p.G894E	.	.	.
RYR1	6261	broad.mit.edu	36	19	43668487	43668487	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042723	exon34	c.C5352T	p.A1784A	.	.	.
GSK3A	2931	broad.mit.edu	36	19	47429167	47429167	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019884	exon8	c.C1033T	p.R345X	.	.	.
SAE1	10055	broad.mit.edu	36	19	52345446	52345446	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005500	exon3	c.G358A	p.E120K	.	.	.
EPS8L1	54869	broad.mit.edu	36	19	60283953	60283953	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133180	exon7	c.C431G	p.A144G	.	.	.
ZNF329	79673	broad.mit.edu	36	19	63332661	63332661	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024620	exon4	c.C22T	p.R8W	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226504346	226504347	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001098623	exon14	c.4091_4092insG	p.A1364fs	.	.	.
ARNT	405	broad.mit.edu	36	1	149075523	149075523	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001197325	exon6	c.T512G	p.V171G	.	.	.
LCE1B	353132	broad.mit.edu	36	1	151051878	151051878	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178349	exon1	c.G332A	p.G111D	.	.	.
TNN	63923	broad.mit.edu	36	1	173329800	173329800	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022093	exon7	c.C1376A	p.A459E	.	.	.
SRSF4	6429	broad.mit.edu	36	1	29348291	29348291	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005626	exon6	c.C703A	p.R235R	.	.	.
SRSF4	6429	broad.mit.edu	36	1	29348298	29348298	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005626	exon6	c.C696T	p.S232S	.	.	.
SRSF4	6429	broad.mit.edu	36	1	29348301	29348301	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005626	exon6	c.G693A	p.K231K	.	.	.
COL16A1	1307	broad.mit.edu	36	1	31938004	31938004	+	Missense_Mutation	SNP	G	A	A	rs41263975	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001856	exon4	c.C263T	p.T88M	.	.	.
SLC2A5	6518	broad.mit.edu	36	1	9020427	9020427	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003039	exon12	c.C1311T	p.L437L	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40412699	40412699	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133170	exon11	c.C1848T	p.S616S	.	.	.
SLC2A10	81031	broad.mit.edu	36	20	44795847	44795847	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030777	exon5	c.G1593A	p.P531P	.	.	.
PTPN1	5770	broad.mit.edu	36	20	48631383	48631383	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002827	exon9	c.C1263T	p.A421A	.	.	.
GNAS	2778	broad.mit.edu	36	20	56919268	56919268	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080426	exon12	c.G1132A	p.E378K	.	.	.
SYCP2	10388	broad.mit.edu	36	20	57888863	57888863	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014258	exon30	c.G2831A	p.C944Y	.	.	.
USP25	29761	broad.mit.edu	36	21	16072204	16072204	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013396	exon4	c.C379A	p.Q127K	.	.	.
KCNE1	3753	broad.mit.edu	36	21	34743686	34743686	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127668	exon3	c.C117T	p.D39D	.	.	.
KRTAP10-6	386674	broad.mit.edu	36	21	44836148	44836148	+	Missense_Mutation	SNP	G	A	A	rs9977124	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198688	exon1	c.C646T	p.P216S	.	.	.
KRTAP12-4	386684	broad.mit.edu	36	21	44898950	44898950	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198698	exon1	c.A10C	p.T4P	.	.	.
TRIOBP	11078	broad.mit.edu	36	22	36450289	36450289	+	Missense_Mutation	SNP	A	G	G	rs71317067	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039141	exon7	c.A1780G	p.T594A	.	.	.
EP300	2033	broad.mit.edu	36	22	39904480	39904480	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001429	exon31	c.T6819G	p.V2273V	.	.	.
SHANK3	85358	broad.mit.edu	36	22	49500316	49500316	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080420	exon20	c.G2288A	p.R763Q	.	.	.
CCDC93	54520	broad.mit.edu	36	2	118423417	118423417	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019044	exon14	c.G1093A	p.D365N	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133256817	133256817	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207363	exon14	c.C4037T	p.S1346F	.	.	.
TTN	7273	broad.mit.edu	36	2	179183139	179183139	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon99	c.G24164A	p.R8055H	.	.	.
NT5C1B	93034	broad.mit.edu	36	2	18628925	18628925	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033253	exon5	c.C801T	p.Y267Y	.	.	.
PPM1L	151742	broad.mit.edu	36	3	162265937	162265937	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139245	exon3	c.C627T	p.N209N	.	.	.
PTPRG	5793	broad.mit.edu	36	3	61950428	61950428	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002841	exon3	c.C280T	p.R94C	.	.	.
EPHA3	2042	broad.mit.edu	36	3	89473858	89473858	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005233	exon5	c.G1234A	p.V412I	.	.	.
ANP32C	23520	broad.mit.edu	36	4	165338279	165338279	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012403	exon1	c.G35A	p.R12Q	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62527886	62527886	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015236	exon15	c.C2612T	p.A871V	.	.	.
MUC7	4589	broad.mit.edu	36	4	71381649	71381649	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	A	A	A	C	A	C	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152291	exon3	c.A599C	p.Q200P	.	.	.
AFF1	4299	broad.mit.edu	36	4	88187321	88187321	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166693	exon4	c.G610A	p.E204K	.	.	.
NMUR2	56923	broad.mit.edu	36	5	151764444	151764444	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020167	exon1	c.G424A	p.V142M	.	.	.
MAT2B	27430	broad.mit.edu	36	5	162862990	162862990	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182796	exon1	c.G12T	p.M4I	.	.	.
SH3PXD2B	285590	broad.mit.edu	36	5	171698778	171698778	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001017995	exon13	c.C1936A	p.P646T	.	.	.
FAM162B	221303	broad.mit.edu	36	6	117189915	117189915	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001085480	exon3	c.A308G	p.N103S	.	.	.
HLA-DQA2	3118	broad.mit.edu	36	6	32822056	32822056	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020056	exon4	c.G675T	p.L225F	.	.	.
RAB23	51715	broad.mit.edu	36	6	57166621	57166621	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016277	exon6	c.G552A	p.T184T	.	.	.
ELOVL4	6785	broad.mit.edu	36	6	80683229	80683229	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022726	exon6	c.T760A	p.Y254N	.	.	.
MGAM	8972	broad.mit.edu	36	7	141401156	141401156	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004668	exon27	c.G3293A	p.R1098Q	.	.	.
ATG9B	285973	broad.mit.edu	36	7	150351124	150351124	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173681	exon4	c.G762A	p.P254P	.	.	.
MLL3	58508	broad.mit.edu	36	7	151476368	151476368	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_170606	exon52	c.A13577G	p.Y4526C	.	.	.
EEPD1	80820	broad.mit.edu	36	7	36160692	36160693	+	Missense_Mutation	DNP	GG	AA	AA	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030636	exon2	c.234_235AA	.	.	.	.
GATS	352954	broad.mit.edu	36	7	99659184	99659184	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178831	exon4	c.G485A	p.R162K	.	.	.
SLC30A8	169026	broad.mit.edu	36	8	118254082	118254082	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173851	exon8	c.G1091T	p.C364F	.	.	.
FLJ43860	389690	broad.mit.edu	36	8	142515297	142515297	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207414	exon26	c.G3453A	p.A1151A	.	.	.
BAI1	575	broad.mit.edu	36	8	143567764	143567764	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001702	exon15	c.G2594A	p.R865H	.	.	.
CYP11B2	1585	broad.mit.edu	36	8	143991821	143991821	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000498	exon6	c.G1003A	p.D335N	.	.	.
TNFRSF10C	8794	broad.mit.edu	36	8	23030350	23030350	+	Missense_Mutation	SNP	C	A	A	rs61736406	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003841	exon5	c.C641A	p.T214N	.	.	.
CYP7B1	9420	broad.mit.edu	36	8	65679918	65679918	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004820	exon5	c.C1108T	p.R370C	.	.	.
TNKS	8658	broad.mit.edu	36	8	9646646	9646646	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003747	exon19	c.T2950C	p.S984P	.	.	.
RORB	6096	broad.mit.edu	36	9	76472543	76472543	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006914	exon8	c.G1017C	p.V339V	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89690861	89690861	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178828	exon4	c.G1639T	p.A547S	.	.	.
GPRASP1	9737	broad.mit.edu	36	X	101795646	101795646	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001099411	exon3	c.C149T	p.A50V	.	.	.
MAP3K15	389840	broad.mit.edu	36	X	19299474	19299474	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001671	exon23	c.G3204A	p.A1068A	.	.	.
ITIH5L	347365	broad.mit.edu	36	X	54800923	54800923	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198510	exon8	c.C2309T	p.S770L	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63328091	63328091	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152424	exon2	c.C1801T	p.R601X	.	.	.