Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target HPSE2 60495 broad.mit.edu 36 10 100391672 100391672 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166246 exon7 c.C1020T p.G340G . . . CNNM1 26507 broad.mit.edu 36 10 101110626 101110626 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020348 exon3 c.C1762T p.R588W . . . ENTPD7 57089 broad.mit.edu 36 10 101445832 101445832 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020354 exon9 c.G973A p.E325K . . . ABCC2 1244 broad.mit.edu 36 10 101567112 101567112 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000392 exon17 c.A2152C p.N718H . . . ABCC2 1244 broad.mit.edu 36 10 101580118 101580118 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000392 exon20 c.C2685T p.P895P . . . CHUK 1147 broad.mit.edu 36 10 101957032 101957032 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001278 exon11 c.T1176C p.T392T . . . CWF19L1 55280 broad.mit.edu 36 10 102003234 102003234 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018294 exon6 c.C557T p.T186M . . . CWF19L1 55280 broad.mit.edu 36 10 102010058 102010058 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018294 exon4 c.C196G p.Q66E . . . NPM3 10360 broad.mit.edu 36 10 103531566 103531566 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006993 exon5 c.G454A p.E152K . . . KCNIP2 30819 broad.mit.edu 36 10 103577974 103577974 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173192 exon6 c.G467A p.R156Q . . . KCNIP2 30819 broad.mit.edu 36 10 103578861 103578861 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173192 exon3 c.G255A p.T85T . . . CYP17A1 1586 broad.mit.edu 36 10 104585111 104585111 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000102 exon2 c.G326A p.R109H . . . CNNM2 54805 broad.mit.edu 36 10 104804109 104804109 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199076 exon3 c.G1799A p.R600Q . . . PDCD11 22984 broad.mit.edu 36 10 105175258 105175258 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014976 exon20 c.C3291T p.D1097D . . . COL17A1 1308 broad.mit.edu 36 10 105787410 105787410 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000494 exon46 c.C3182T p.A1061V . . . C10orf79 80217 broad.mit.edu 36 10 105881100 105881100 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025145 exon37 c.A4810G p.K1604E . . . SORCS1 114815 broad.mit.edu 36 10 108347175 108347175 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052918 exon24 c.G3189A p.T1063T . . . HABP2 3026 broad.mit.edu 36 10 115333949 115333949 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177660 exon11 c.C1212T p.Y404Y . . . USP6NL 9712 broad.mit.edu 36 10 11545393 11545393 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014688 exon15 c.G1540A p.A514T . . . C10orf118 55088 broad.mit.edu 36 10 115912720 115912720 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018017 exon2 c.A298G p.N100D . . . AFAP1L2 84632 broad.mit.edu 36 10 116058246 116058246 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001936 exon9 c.C903T p.Y301Y . . . PNLIPRP3 119548 broad.mit.edu 36 10 118192568 118192568 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011709 exon3 c.G216A p.A72A . . . PNLIPRP3 119548 broad.mit.edu 36 10 118226283 118226283 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011709 exon11 c.A1302G p.A434A . . . SLC18A2 6571 broad.mit.edu 36 10 118993695 118993695 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003054 exon3 c.C345T p.S115S . . . SLC18A2 6571 broad.mit.edu 36 10 119007327 119007327 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003054 exon10 c.G925A p.A309T . . . SLC18A2 6571 broad.mit.edu 36 10 119019627 119019627 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003054 exon14 c.C1242T p.H414H . . . PRLHR 2834 broad.mit.edu 36 10 120343868 120343868 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004248 exon2 c.G879A p.P293P . . . TIAL1 7073 broad.mit.edu 36 10 121329487 121329487 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033925 exon6 c.G448A p.A150T . . . DMBT1 1755 broad.mit.edu 36 10 124380564 124380564 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007329 exon46 c.T5736C p.D1912D . . . ACADSB 36 broad.mit.edu 36 10 124802583 124802583 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001609 exon10 c.C1145T p.T382M . . . ADARB2 105 broad.mit.edu 36 10 1252976 1252976 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018702 exon7 c.C1597T p.R533C . . . GPR26 2849 broad.mit.edu 36 10 125416421 125416421 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153442 exon1 c.G508A p.A170T . . . CHST15 51363 broad.mit.edu 36 10 125770795 125770795 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015892 exon6 c.C1314T p.C438C . . . ADARB2 105 broad.mit.edu 36 10 1269726 1269726 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018702 exon6 c.C1423T p.L475L . . . FAM196A 642938 broad.mit.edu 36 10 128864355 128864355 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039762 exon4 c.G295A p.V99I . . . EBF3 253738 broad.mit.edu 36 10 131529163 131529163 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005463 exon14 c.C1469T p.A490V . . . EBF3 253738 broad.mit.edu 36 10 131561753 131561753 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005463 exon8 c.G734A p.R245H . . . MCM10 55388 broad.mit.edu 36 10 13273394 13273394 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018518 exon11 c.G1505A p.R502Q . . . DPYSL4 10570 broad.mit.edu 36 10 133862367 133862367 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006426 exon8 c.G713A p.R238Q . . . KNDC1 85442 broad.mit.edu 36 10 134875311 134875311 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152643 exon23 c.G4195A p.A1399T . . . BEND7 222389 broad.mit.edu 36 10 13563015 13563015 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152751 exon6 c.C797T p.A266V . . . FAM171A1 221061 broad.mit.edu 36 10 15366053 15366053 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010924 exon2 c.C155T p.A52V . . . CUBN 8029 broad.mit.edu 36 10 17066165 17066165 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081 exon30 c.C4470T p.T1490T . . . CUBN 8029 broad.mit.edu 36 10 17187553 17187553 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081 exon11 c.C1139T p.P380L . . . STAM 8027 broad.mit.edu 36 10 17796591 17796591 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003473 exon14 c.G1429A p.A477T . . . SLC39A12 221074 broad.mit.edu 36 10 18316541 18316541 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145195 exon7 c.C1224T p.A408A . . . BMI1 648 broad.mit.edu 36 10 22655398 22655398 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005180 exon2 c.C14T p.T5M . . . ZMYND11 10771 broad.mit.edu 36 10 245931 245931 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_212479 exon3 c.C219T p.C73C . . . KIAA1217 56243 broad.mit.edu 36 10 24709882 24709882 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019590 exon3 c.G433A p.A145T . . . KIAA1217 56243 broad.mit.edu 36 10 24875067 24875067 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019590 exon21 c.G5640A p.P1880P . . . GAD2 2572 broad.mit.edu 36 10 26547988 26547988 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134366 exon4 c.G297A p.P99P . . . PDSS1 23590 broad.mit.edu 36 10 27071466 27071466 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014317 exon11 c.T1061C p.F354S . . . MASTL 84930 broad.mit.edu 36 10 27494411 27494411 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172303 exon6 c.G748A p.V250I . . . SVIL 6840 broad.mit.edu 36 10 29794663 29794663 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003174 exon32 c.G4722A p.A1574A . . . SVIL 6840 broad.mit.edu 36 10 29802869 29802869 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003174 exon28 c.C4155T p.C1385C . . . SVIL 6840 broad.mit.edu 36 10 29809664 29809664 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003174 exon27 c.G3907A p.G1303R . . . SVIL 6840 broad.mit.edu 36 10 29819948 29819948 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003174 exon20 c.G2748A p.T916T . . . SVIL 6840 broad.mit.edu 36 10 29862298 29862298 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021738 exon8 c.C1004T p.A335V . . . MAP3K8 1326 broad.mit.edu 36 10 30787093 30787093 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005204 exon7 c.G948A p.T316T . . . KIF5B 3799 broad.mit.edu 36 10 32346164 32346164 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004521 exon24 c.C2674T p.R892C . . . BMS1 9790 broad.mit.edu 36 10 42609394 42609394 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014753 exon9 c.C1178T p.T393M . . . ZNF485 220992 broad.mit.edu 36 10 43431746 43431746 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145312 exon5 c.C249T p.V83V . . . RASSF4 83937 broad.mit.edu 36 10 44806473 44806473 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032023 exon9 c.G757A p.A253T . . . ALOX5 240 broad.mit.edu 36 10 45197948 45197948 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000698 exon2 c.C162T p.Y54Y . . . SYT15 83849 broad.mit.edu 36 10 46388650 46388650 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181519 exon3 c.G292A p.D98N . . . GPRIN2 9721 broad.mit.edu 36 10 46419942 46419942 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014696 exon3 c.G1056A p.P352P . . . RBP3 5949 broad.mit.edu 36 10 48010173 48010173 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002900 exon1 c.C711T p.G237G . . . PRKG1 5592 broad.mit.edu 36 10 53337336 53337336 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006258 exon5 c.G762T p.E254D . . . ANKRD16 54522 broad.mit.edu 36 10 5965105 5965105 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009943 exon5 c.C719T p.A240V . . . FBXO18 84893 broad.mit.edu 36 10 6003490 6003490 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032807 exon16 c.C2427T p.A809A . . . IL2RA 3559 broad.mit.edu 36 10 6107838 6107838 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000417 exon2 c.C221T p.S74L . . . EGR2 1959 broad.mit.edu 36 10 64244084 64244084 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000399 exon2 c.G320A p.C107Y . . . REEP3 221035 broad.mit.edu 36 10 65050587 65050587 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001330 exon8 c.C720T p.Y240Y . . . CTNNA3 29119 broad.mit.edu 36 10 68610239 68610239 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013266 exon7 c.C889T p.R297X . . . DNA2 1763 broad.mit.edu 36 10 69849647 69849647 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080449 exon18 c.G2964A p.A988A . . . TET1 80312 broad.mit.edu 36 10 70003066 70003066 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030625 exon2 c.C965A p.S322Y . . . TET1 80312 broad.mit.edu 36 10 70081657 70081657 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030625 exon5 c.C4325T p.A1442V . . . STOX1 219736 broad.mit.edu 36 10 70315276 70315276 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152709 exon3 c.C1718A p.P573H . . . HKDC1 80201 broad.mit.edu 36 10 70675979 70675979 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025130 exon8 c.C1014T p.H338H . . . HK1 3098 broad.mit.edu 36 10 70812457 70812457 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033498 exon13 c.C1486T p.R496W . . . NEUROG3 50674 broad.mit.edu 36 10 71002430 71002430 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020999 exon2 c.C376T p.R126C . . . H2AFY2 55506 broad.mit.edu 36 10 71538941 71538941 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018649 exon8 c.G925A p.V309I . . . LRRC20 55222 broad.mit.edu 36 10 71731247 71731247 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207119 exon5 c.G424A p.A142T . . . NODAL 4838 broad.mit.edu 36 10 71862782 71862782 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018055 exon3 c.G960A p.P320P . . . SFMBT2 57713 broad.mit.edu 36 10 7253909 7253909 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029880 exon19 c.C2369T p.A790V . . . CDH23 64072 broad.mit.edu 36 10 73237722 73237722 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171933 exon13 c.C1954T p.R652W . . . SFMBT2 57713 broad.mit.edu 36 10 7330528 7330528 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029880 exon8 c.G960A p.A320A . . . SPOCK2 9806 broad.mit.edu 36 10 73498012 73498012 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014767 exon7 c.C528T p.C176C . . . OIT3 170392 broad.mit.edu 36 10 74362194 74362194 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152635 exon9 c.G1544A p.R515Q . . . TTC18 118491 broad.mit.edu 36 10 74761015 74761015 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145170 exon9 c.C913T p.R305W . . . MYST4 23522 broad.mit.edu 36 10 76454746 76454746 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012330 exon17 c.A3397G p.R1133G . . . ATP5C1 509 broad.mit.edu 36 10 7884762 7884762 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001973 exon8 c.C829T p.R277C . . . ZMIZ1 57178 broad.mit.edu 36 10 80728859 80728859 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020338 exon16 c.C1713T p.G571G . . . MAT1A 4143 broad.mit.edu 36 10 82024825 82024825 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000429 exon7 c.A879G p.S293S . . . TUBB8 347688 broad.mit.edu 36 10 85127 85127 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177987 exon1 c.G52A p.A18T . . . LRIT1 26103 broad.mit.edu 36 10 85987011 85987011 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015613 exon2 c.G534T p.W178C . . . PTEN 5728 broad.mit.edu 36 10 89682884 89682884 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000314 exon5 c.C388T p.R130X PTEN,central_nervous_system,brain,Substitution - Nonsense,0 . . PTEN 5728 broad.mit.edu 36 10 89707652 89707652 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000314 exon7 c.C697T p.R233X PTEN,central_nervous_system,brain,Substitution - Nonsense,0 . . ANKRD22 118932 broad.mit.edu 36 10 90581659 90581659 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144590 exon2 c.G126A p.T42T . . . LIPA 3988 broad.mit.edu 36 10 90964655 90964655 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127605 exon10 c.G1110A p.P370P . . . IFIT1 3434 broad.mit.edu 36 10 91142454 91142454 + De_novo_Start_OutOfFrame SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001548 exon1 c.G5T p.S2I . . . HTR7 3363 broad.mit.edu 36 10 92498825 92498825 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019859 exon2 c.C1046T p.A349V . . . HECTD2 143279 broad.mit.edu 36 10 93250340 93250340 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182765 exon19 c.G2052A p.T684T . . . EXOC6 54536 broad.mit.edu 36 10 94649347 94649347 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013848 exon5 c.T409A p.Y137N . . . PDLIM1 9124 broad.mit.edu 36 10 97013754 97013754 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020992 exon4 c.G390A p.S130S . . . TLL2 7093 broad.mit.edu 36 10 98170718 98170718 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012465 exon7 c.G908A p.R303Q . . . PI4K2A 55361 broad.mit.edu 36 10 99423424 99423424 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018425 exon9 c.C1375T p.R459W . . . ZFYVE27 118813 broad.mit.edu 36 10 99500195 99500195 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001002261 exon6 c.C782T p.T261M . . . MUC6 4588 broad.mit.edu 36 11 1016400 1016401 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005961 exon20 c.2473_2474insC p.E825fs . . . KIAA1377 57562 broad.mit.edu 36 11 101354330 101354330 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020802 exon7 c.G2888A p.R963Q . . . YAP1 10413 broad.mit.edu 36 11 101490126 101490126 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006106 exon2 c.G363A p.Q121Q . . . DDI1 414301 broad.mit.edu 36 11 103413584 103413584 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001711 exon1 c.G824A p.R275Q . . . AMPD3 272 broad.mit.edu 36 11 10463112 10463112 + Silent SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025389 exon5 c.C759A p.T253T . . . ELMOD1 55531 broad.mit.edu 36 11 107007549 107007549 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130037 exon5 c.G226A p.A76T . . . CTR9 9646 broad.mit.edu 36 11 10757071 10757071 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014633 exon25 c.G3365A p.R1122H . . . C11orf87 399947 broad.mit.edu 36 11 108799604 108799604 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207645 exon2 c.C35T p.A12V . . . ARHGAP20 57569 broad.mit.edu 36 11 109955873 109955873 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020809 exon16 c.G3007A p.G1003S . . . ARHGAP20 57569 broad.mit.edu 36 11 109987300 109987300 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020809 exon8 c.G651A p.M217I . . . TTC12 54970 broad.mit.edu 36 11 112716651 112716651 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017868 exon11 c.C882T p.N294N . . . USP28 57646 broad.mit.edu 36 11 113228454 113228454 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020886 exon3 c.G247A p.A83T . . . HTR3A 3359 broad.mit.edu 36 11 113361974 113361974 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000869 exon6 c.G590A p.R197H . . . GALNTL4 374378 broad.mit.edu 36 11 11410825 11410825 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198516 exon3 c.C514T p.R172C . . . BUD13 84811 broad.mit.edu 36 11 116138748 116138748 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032725 exon4 c.T767C p.L256P . . . SIDT2 51092 broad.mit.edu 36 11 116558687 116558687 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040455 exon6 c.C657T p.I219I . . . DSCAML1 57453 broad.mit.edu 36 11 116880888 116880888 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020693 exon10 c.G2323A p.G775S . . . TMPRSS13 84000 broad.mit.edu 36 11 117290399 117290399 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077263 exon4 c.G597A p.E199E . . . MLL 4297 broad.mit.edu 36 11 117874427 117874427 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005933 exon22 c.C5926T p.R1976X . . . MLL 4297 broad.mit.edu 36 11 117897285 117897285 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005933 exon35 c.C11577T p.A3859A . . . CXCR5 643 broad.mit.edu 36 11 118269760 118269760 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032966 exon1 c.G162A p.L54L . . . CBL 867 broad.mit.edu 36 11 118661183 118661183 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005188 exon11 c.G1638A p.P546P . . . PVRL1 5818 broad.mit.edu 36 11 119054657 119054657 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002855 exon2 c.C108T p.N36N . . . GRIK4 2900 broad.mit.edu 36 11 120281264 120281264 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014619 exon11 c.G1328A p.R443H . . . TECTA 7007 broad.mit.edu 36 11 120485340 120485340 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005422 exon3 c.G409A p.A137T . . . TECTA 7007 broad.mit.edu 36 11 120501362 120501362 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005422 exon7 c.G1345A p.V449I . . . TECTA 7007 broad.mit.edu 36 11 120503828 120503828 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005422 exon8 c.C1932T p.C644C . . . TECTA 7007 broad.mit.edu 36 11 120536222 120536222 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005422 exon14 c.G4858A p.G1620S . . . SORL1 6653 broad.mit.edu 36 11 120965216 120965216 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003105 exon29 c.G3985A p.G1329S . . . HSPA8 3312 broad.mit.edu 36 11 122435902 122435902 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153201 exon5 c.C609T p.G203G . . . MUC5B 727897 broad.mit.edu 36 11 1232002 1232002 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002458 exon34 c.C15322T p.R5108C . . . OR8B4 283162 broad.mit.edu 36 11 123799488 123799488 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005196 exon1 c.C490T p.R164X . . . ESAM 90952 broad.mit.edu 36 11 124129037 124129037 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138961 exon7 c.C888A p.P296P . . . ESAM 90952 broad.mit.edu 36 11 124133499 124133499 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138961 exon2 c.C205T p.P69S . . . ROBO4 54538 broad.mit.edu 36 11 124269071 124269071 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019055 exon9 c.C1399T p.R467W . . . CDON 50937 broad.mit.edu 36 11 125393478 125393478 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016952 exon5 c.T597G p.H199Q . . . CDON 50937 broad.mit.edu 36 11 125396435 125396435 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016952 exon3 c.C267A p.S89S . . . DCPS 28960 broad.mit.edu 36 11 125706567 125706567 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014026 exon3 c.G434A p.R145H . . . KIRREL3 84623 broad.mit.edu 36 11 125800823 125800823 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032531 exon16 c.C1813T p.R605W . . . NFRKB 4798 broad.mit.edu 36 11 129244859 129244859 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143835 exon24 c.G3271A p.V1091M . . . NFRKB 4798 broad.mit.edu 36 11 129252445 129252445 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143835 exon16 c.G1557A p.R519R . . . PRDM10 56980 broad.mit.edu 36 11 129320095 129320095 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020228 exon6 c.G543A p.A181A . . . SNX19 399979 broad.mit.edu 36 11 130253532 130253532 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014758 exon11 c.T2974A p.S992T . . . NTM 50863 broad.mit.edu 36 11 131521506 131521506 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144058 exon2 c.G288A p.T96T . . . IGSF9B 22997 broad.mit.edu 36 11 133306655 133306655 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014987 exon10 c.T1271C p.V424A . . . IGSF9B 22997 broad.mit.edu 36 11 133310759 133310759 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014987 exon7 c.G930A p.G310G . . . JAM3 83700 broad.mit.edu 36 11 133521076 133521076 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032801 exon6 c.A773T p.D258V . . . ARNTL 406 broad.mit.edu 36 11 13353744 13353744 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001030273 exon15 c.C1052T p.T351M . . . CTSD 1509 broad.mit.edu 36 11 1739243 1739243 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001909 exon2 c.C100T p.R34W . . . KCNC1 3746 broad.mit.edu 36 11 17750441 17750441 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004976 exon2 c.G1224A p.P408P . . . MRGPRX3 117195 broad.mit.edu 36 11 18115970 18115970 + Silent SNP C T T rs72866709 by1000genomes TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054031 exon3 c.C645T p.Y215Y . . . TMEM86A 144110 broad.mit.edu 36 11 18679872 18679872 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153347 exon3 c.G463A p.G155S . . . PTPN5 84867 broad.mit.edu 36 11 18711447 18711447 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032781 exon11 c.G1129A p.V377I . . . CSRP3 8048 broad.mit.edu 36 11 19164390 19164390 + Silent SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003476 exon4 c.T363G p.P121P . . . BET1L 51272 broad.mit.edu 36 11 195305 195305 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098787 exon4 c.G333A p.T111T . . . NAV2 89797 broad.mit.edu 36 11 19912186 19912186 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111018 exon7 c.G1628A p.G543D . . . NAV2 89797 broad.mit.edu 36 11 19926946 19926946 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111018 exon10 c.G2197A p.A733T . . . DBX1 120237 broad.mit.edu 36 11 20134561 20134561 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029865 exon4 c.C807T p.G269G . . . PSMD13 5719 broad.mit.edu 36 11 242542 242542 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002817 exon13 c.C1073T p.T358M . . . KCNQ1 3784 broad.mit.edu 36 11 2549198 2549198 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181798 exon4 c.G291A p.T97T . . . MUC15 143662 broad.mit.edu 36 11 26543492 26543492 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135092 exon3 c.A571G p.S191G . . . ANO3 63982 broad.mit.edu 36 11 26577800 26577800 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031418 exon17 c.T1799A p.V600D . . . ANO3 63982 broad.mit.edu 36 11 26621401 26621401 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031418 exon23 c.C2372T p.A791V . . . CARS 833 broad.mit.edu 36 11 2996521 2996521 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014437 exon13 c.T1430G p.F477C . . . QSER1 79832 broad.mit.edu 36 11 32910505 32910505 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001076786 exon4 c.C738T p.N246N . . . CSTF3 1479 broad.mit.edu 36 11 33119748 33119748 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033505 exon3 c.G266A p.S89N . . . HIPK3 10114 broad.mit.edu 36 11 33327391 33327391 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001048200 exon13 c.C2726T p.P909L . . . CAT 847 broad.mit.edu 36 11 34446415 34446415 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001752 exon11 c.G1331A p.R444Q . . . ELF5 2001 broad.mit.edu 36 11 34471610 34471610 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001422 exon3 c.G347A p.R116H . . . TRIM44 54765 broad.mit.edu 36 11 35641652 35641652 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017583 exon1 c.C417T p.S139S . . . LDLRAD3 143458 broad.mit.edu 36 11 36059854 36059854 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174902 exon3 c.G269A p.R90Q . . . ART5 116969 broad.mit.edu 36 11 3618041 3618041 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053017 exon2 c.G194A p.R65Q . . . TRAF6 7189 broad.mit.edu 36 11 36479386 36479386 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145803 exon3 c.G256A p.G86S . . . LRRC4C 57689 broad.mit.edu 36 11 40093215 40093215 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020929 exon2 c.C1204T p.R402W . . . CHST1 8534 broad.mit.edu 36 11 45627978 45627978 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003654 exon4 c.G1072A p.E358K . . . CHST1 8534 broad.mit.edu 36 11 45628178 45628178 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003654 exon4 c.C872T p.P291L . . . CHST1 8534 broad.mit.edu 36 11 45628890 45628890 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003654 exon4 c.G160A p.A54T . . . OR52I1 390037 broad.mit.edu 36 11 4571991 4571991 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005169 exon1 c.C147T p.I49I . . . MAPK8IP1 9479 broad.mit.edu 36 11 45883305 45883305 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005456 exon11 c.C1992T p.P664P . . . PHF21A 51317 broad.mit.edu 36 11 45912173 45912173 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101802 exon18 c.C1965T p.A655A . . . CREB3L1 90993 broad.mit.edu 36 11 46290500 46290500 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052854 exon6 c.C802T p.R268W . . . CREB3L1 90993 broad.mit.edu 36 11 46295581 46295581 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052854 exon10 c.C1225A p.L409M . . . DGKZ 8525 broad.mit.edu 36 11 46352333 46352333 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003646 exon15 c.C1377T p.H459H . . . AMBRA1 55626 broad.mit.edu 36 11 46375892 46375892 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017749 exon19 c.C3311T p.T1104M . . . F2 2147 broad.mit.edu 36 11 46704223 46704223 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000506 exon7 c.C798T p.D266D . . . NR1H3 10062 broad.mit.edu 36 11 47239723 47239723 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130102 exon5 c.G623A p.R208H . . . MADD 8567 broad.mit.edu 36 11 47260578 47260578 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003682 exon9 c.C1540T p.R514C . . . MADD 8567 broad.mit.edu 36 11 47287660 47287660 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003682 exon28 c.G4079A p.R1360Q . . . NDUFS3 4722 broad.mit.edu 36 11 47560258 47560258 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004551 exon5 c.C424T p.R142C . . . FNBP4 23360 broad.mit.edu 36 11 47710670 47710670 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015308 exon11 c.G1815T p.W605C . . . FNBP4 23360 broad.mit.edu 36 11 47731160 47731160 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015308 exon4 c.C521A p.P174H . . . OR4X1 390113 broad.mit.edu 36 11 48242431 48242431 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004726 exon1 c.G443A p.G148D . . . OR51A4 401666 broad.mit.edu 36 11 4924623 4924623 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005329 exon1 c.C284T p.S95L . . . HBG2 3048 broad.mit.edu 36 11 5232208 5232208 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000184 exon2 c.C205T p.L69L . . . OR52D1 390066 broad.mit.edu 36 11 5467404 5467404 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005163 exon1 c.G892C p.A298P . . . OR5I1 10798 broad.mit.edu 36 11 55460020 55460020 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006637 exon1 c.C433T p.R145W . . . TRIM6-TRIM34 445372 broad.mit.edu 36 11 5588012 5588012 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003818 exon6 c.C919T p.R307X . . . LRRC55 219527 broad.mit.edu 36 11 56706722 56706722 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005210 exon1 c.G779A p.R260H . . . TRIM22 10346 broad.mit.edu 36 11 5674261 5674261 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199573 exon2 c.G223A p.A75T . . . SLC43A3 29015 broad.mit.edu 36 11 56949603 56949603 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199329 exon4 c.C301T p.R101C . . . SERPING1 710 broad.mit.edu 36 11 57130254 57130254 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000062 exon5 c.A881G p.Y294C . . . CNTF 1270 broad.mit.edu 36 11 58146891 58146891 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000614 exon1 c.C90T p.D30D . . . OR52E6 390078 broad.mit.edu 36 11 5819067 5819067 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005167 exon1 c.C637A p.L213I . . . GLYAT 10249 broad.mit.edu 36 11 58234736 58234736 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201648 exon5 c.C391T p.R131C . . . GLYATL2 219970 broad.mit.edu 36 11 58361428 58361428 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145016 exon4 c.G205A p.D69N . . . OR4D10 390197 broad.mit.edu 36 11 59001777 59001777 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004705 exon1 c.A299G p.Q100R . . . STX3 6809 broad.mit.edu 36 11 59319484 59319484 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178040 exon9 c.C739T p.R247X . . . MS4A1 931 broad.mit.edu 36 11 59990073 59990073 + Nonsense_Mutation SNP T A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021950 exon5 c.T440A p.L147X . . . PRPF19 27339 broad.mit.edu 36 11 60424964 60424964 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014502 exon9 c.C656T p.A219V . . . CD5 921 broad.mit.edu 36 11 60642271 60642271 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014207 exon3 c.T143C p.L48P . . . VWCE 220001 broad.mit.edu 36 11 60806939 60806939 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152718 exon6 c.C556A p.L186I . . . TMEM138 51524 broad.mit.edu 36 11 60891977 60891977 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016464 exon4 c.C307T p.R103C . . . CDHR5 53841 broad.mit.edu 36 11 611659 611659 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031264 exon5 c.C410T p.T137M . . . BEST1 7439 broad.mit.edu 36 11 61481046 61481046 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004183 exon5 c.C636T p.N212N . . . GANAB 23193 broad.mit.edu 36 11 62163141 62163141 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198335 exon4 c.G270A p.E90E . . . INTS5 80789 broad.mit.edu 36 11 62173436 62173436 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030628 exon2 c.G692A p.G231D . . . INTS5 80789 broad.mit.edu 36 11 62173571 62173571 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030628 exon2 c.C557T p.T186M . . . CNGA4 1262 broad.mit.edu 36 11 6218300 6218300 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037329 exon4 c.G700A p.D234N . . . STX5 6811 broad.mit.edu 36 11 62351445 62351445 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003164 exon4 c.C298T p.R100C . . . CCKBR 887 broad.mit.edu 36 11 6248875 6248875 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176875 exon5 c.C870T p.S290S . . . RCOR2 283248 broad.mit.edu 36 11 63440403 63440403 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173587 exon1 c.C102T p.D34D . . . FLRT1 23769 broad.mit.edu 36 11 63641607 63641607 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013280 exon2 c.C1292T p.A431V . . . APBB1 322 broad.mit.edu 36 11 6373981 6373981 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164 exon12 c.C1713A p.S571S . . . PLCB3 5331 broad.mit.edu 36 11 63782967 63782967 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184883 exon10 c.C1087T p.R363C . . . CCDC88B 283234 broad.mit.edu 36 11 63875281 63875281 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032251 exon17 c.G2936A p.R979Q . . . RASGRP2 10235 broad.mit.edu 36 11 64264997 64264997 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098670 exon5 c.G370A p.V124I . . . ATG2A 23130 broad.mit.edu 36 11 64437890 64437890 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015104 exon4 c.C569T p.A190V . . . SNX15 29907 broad.mit.edu 36 11 64559181 64559181 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013306 exon5 c.G447A p.P149P . . . CAPN1 823 broad.mit.edu 36 11 64728775 64728775 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198868 exon11 c.C1211T p.T404M . . . SCYL1 57410 broad.mit.edu 36 11 65060352 65060352 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001048218 exon12 c.C1622T p.S541L . . . LTBP3 4054 broad.mit.edu 36 11 65076367 65076367 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021070 exon7 c.C1273G p.R425G . . . EHBP1L1 254102 broad.mit.edu 36 11 65103169 65103169 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001099409 exon2 c.G149A p.R50H . . . EHBP1L1 254102 broad.mit.edu 36 11 65104387 65104387 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099409 exon6 c.C495T p.D165D . . . MAP3K11 4296 broad.mit.edu 36 11 65132070 65132070 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002419 exon3 c.G968A p.R323H . . . PCNXL3 399909 broad.mit.edu 36 11 65151024 65151024 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032223 exon21 c.C3453T p.P1151P . . . RELA 5970 broad.mit.edu 36 11 65178776 65178776 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021975 exon11 c.G1305A p.T435T . . . BANF1 8815 broad.mit.edu 36 11 65527807 65527807 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143985 exon3 c.C258T p.D86D . . . CATSPER1 117144 broad.mit.edu 36 11 65549971 65549971 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053054 exon1 c.C456A p.P152P . . . SF3B2 10992 broad.mit.edu 36 11 65581398 65581398 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006842 exon7 c.G753A p.P251P . . . PACS1 55690 broad.mit.edu 36 11 65757946 65757946 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018026 exon16 c.C1953T p.S651S . . . KLC2 64837 broad.mit.edu 36 11 65788429 65788429 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134775 exon9 c.C1154T p.A385V . . . RAB1B 81876 broad.mit.edu 36 11 65795883 65795883 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030981 exon2 c.C54T p.G18G . . . CTSF 8722 broad.mit.edu 36 11 66087992 66087992 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003793 exon13 c.G1443A p.A481A . . . RBM4B 83759 broad.mit.edu 36 11 66201016 66201016 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031492 exon2 c.C111T p.Y37Y . . . SPTBN2 6712 broad.mit.edu 36 11 66239969 66239969 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006946 exon3 c.C217T p.R73W . . . DEAF1 10522 broad.mit.edu 36 11 668761 668761 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021008 exon9 c.C1188T p.G396G . . . CABP4 57010 broad.mit.edu 36 11 66981629 66981629 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145200 exon4 c.G551A p.R184H . . . NDUFV1 4723 broad.mit.edu 36 11 67135147 67135147 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166102 exon6 c.G779A p.R260H . . . OR2AG1 144125 broad.mit.edu 36 11 6763133 6763133 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004489 exon1 c.T289C p.C97R . . . PPP6R3 55291 broad.mit.edu 36 11 68125988 68125988 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164164 exon20 c.G2034A p.A678A . . . TPCN2 219931 broad.mit.edu 36 11 68597018 68597018 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139075 exon13 c.C1203T p.N401N . . . ZNF215 7762 broad.mit.edu 36 11 6920968 6920968 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013250 exon5 c.C562A p.L188M . . . RBMXL2 27288 broad.mit.edu 36 11 7066944 7066944 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014469 exon1 c.G17A p.R6H . . . KRTAP5-9 3846 broad.mit.edu 36 11 70937466 70937466 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005553 exon1 c.G115A p.V39I . . . NUMA1 4926 broad.mit.edu 36 11 71404546 71404546 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006185 exon15 c.C1651T p.H551Y . . . NUMA1 4926 broad.mit.edu 36 11 71408190 71408190 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006185 exon9 c.C582T p.N194N . . . FOLR1 2348 broad.mit.edu 36 11 71584643 71584643 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016724 exon6 c.C548A p.P183H . . . UCP3 7352 broad.mit.edu 36 11 73392626 73392626 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022803 exon6 c.G718A p.V240M . . . C2CD3 26005 broad.mit.edu 36 11 73521642 73521642 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015531 exon7 c.G1112A p.R371Q . . . OLFML1 283298 broad.mit.edu 36 11 7487313 7487313 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198474 exon3 c.A527G p.Y176C . . . MAP6 4135 broad.mit.edu 36 11 74996925 74996925 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033063 exon2 c.T996C p.H332H . . . WNT11 7481 broad.mit.edu 36 11 75583413 75583413 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004626 exon3 c.C443A p.P148H . . . C11orf30 56946 broad.mit.edu 36 11 75852637 75852637 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020193 exon7 c.T696C p.T232T . . . TSKU 25987 broad.mit.edu 36 11 76184767 76184767 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015516 exon2 c.G459A p.T153T . . . TSKU 25987 broad.mit.edu 36 11 76185231 76185231 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015516 exon2 c.T923C p.V308A . . . RSF1 51773 broad.mit.edu 36 11 77065651 77065651 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016578 exon13 c.C3175T p.R1059C . . . ALG8 79053 broad.mit.edu 36 11 77493114 77493114 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007027 exon11 c.G1212A p.S404S . . . ALG8 79053 broad.mit.edu 36 11 77516105 77516105 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007027 exon2 c.C121T p.R41X . . . ODZ4 26011 broad.mit.edu 36 11 78064901 78064901 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098816 exon30 c.C5440T p.R1814C . . . EFCAB4A 283229 broad.mit.edu 36 11 818870 818870 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_173584 exon3 c.C184T p.P62S . . . C11orf82 220042 broad.mit.edu 36 11 82322674 82322674 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145018 exon6 c.C2646T p.G882G . . . PCF11 51585 broad.mit.edu 36 11 82555151 82555151 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015885 exon5 c.C1564T p.R522C . . . PCF11 51585 broad.mit.edu 36 11 82570583 82570583 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015885 exon13 c.C4207T p.R1403W . . . SYTL2 54843 broad.mit.edu 36 11 85109583 85109583 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032943 exon9 c.C1527A p.S509S . . . ST5 6764 broad.mit.edu 36 11 8688976 8688976 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005418 exon14 c.C2344T p.R782C . . . ST5 6764 broad.mit.edu 36 11 8693749 8693749 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005418 exon9 c.C1822T p.R608C . . . ST5 6764 broad.mit.edu 36 11 8708089 8708089 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005418 exon6 c.C1324T p.R442C . . . CHID1 66005 broad.mit.edu 36 11 873170 873170 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142676 exon11 c.C1012T p.R338C . . . GRM5 2915 broad.mit.edu 36 11 87977661 87977661 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000842 exon5 c.G1267A p.A423T . . . DENND5A 23258 broad.mit.edu 36 11 9120105 9120105 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015213 exon22 c.G3638A p.G1213D . . . DENND5A 23258 broad.mit.edu 36 11 9148882 9148882 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015213 exon9 c.G1925A p.R642H . . . FAT3 120114 broad.mit.edu 36 11 92172653 92172653 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008781 exon9 c.C6826T p.L2276L . . . HEPHL1 341208 broad.mit.edu 36 11 93436470 93436470 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098672 exon3 c.G564A p.S188S . . . HEPHL1 341208 broad.mit.edu 36 11 93443265 93443265 + Missense_Mutation SNP C T T rs12291622 byCluster;byFrequency;by2Hit2Allele;byHapMap TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098672 exon6 c.C1141T p.R381C . . . PIWIL4 143689 broad.mit.edu 36 11 93956349 93956349 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152431 exon5 c.G601A p.V201M . . . PIWIL4 143689 broad.mit.edu 36 11 93980429 93980429 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152431 exon14 c.C1815T p.G605G . . . AMOTL1 154810 broad.mit.edu 36 11 94232405 94232405 + Missense_Mutation SNP G A A rs35278871 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130847 exon9 c.G2012A p.R671Q . . . AMOTL1 154810 broad.mit.edu 36 11 94237574 94237574 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130847 exon10 c.G2162A p.R721Q . . . ZNF143 7702 broad.mit.edu 36 11 9490635 9490635 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003442 exon13 c.C1440T p.D480D . . . AP2A2 161 broad.mit.edu 36 11 978562 978562 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012305 exon10 c.A1142G p.D381G . . . OR5T2 219464 broad.mit.edu 36 11 55756161 55756161 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004746 exon1 c.1077delA p.K359fs . . . MYBPC1 4604 broad.mit.edu 36 12 100560465 100560465 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002465 exon11 c.G803A p.R268H . . . C12orf59 120939 broad.mit.edu 36 12 10230407 10230407 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153022 exon3 c.A199G p.T67A . . . STAB2 55576 broad.mit.edu 36 12 102658653 102658653 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017564 exon55 c.G5870A p.R1957Q . . . STAB2 55576 broad.mit.edu 36 12 102676108 102676108 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017564 exon64 c.C7018T p.R2340X . . . EID3 493861 broad.mit.edu 36 12 103221963 103221963 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008394 exon1 c.C121T p.R41C . . . CHST11 50515 broad.mit.edu 36 12 103675050 103675050 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173982 exon3 c.G383A p.R128Q . . . APPL2 55198 broad.mit.edu 36 12 104107961 104107961 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018171 exon15 c.G1344A p.T448T . . . RFX4 5992 broad.mit.edu 36 12 105614280 105614280 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032491 exon4 c.C477T p.G159G . . . BTBD11 121551 broad.mit.edu 36 12 106538068 106538068 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017523 exon9 c.C1239T p.S413S . . . ASCL4 121549 broad.mit.edu 36 12 106693134 106693134 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203436 exon1 c.G12A p.T4T . . . FICD 11153 broad.mit.edu 36 12 107435104 107435104 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007076 exon2 c.C225T p.C75C . . . SELPLG 6404 broad.mit.edu 36 12 107541902 107541902 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003006 exon2 c.C311T p.T104M . . . ACACB 32 broad.mit.edu 36 12 108094465 108094465 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001093 exon5 c.G1038A p.A346A . . . TCHP 84260 broad.mit.edu 36 12 108835237 108835237 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143852 exon10 c.G1111A p.A371T . . . TCTN1 79600 broad.mit.edu 36 12 109562629 109562629 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001082537 exon8 c.G902A p.R301Q . . . ATXN2 6311 broad.mit.edu 36 12 110438426 110438426 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002973 exon10 c.G1770A p.S590S . . . NAA25 80018 broad.mit.edu 36 12 110994165 110994165 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024953 exon10 c.G953A p.R318H . . . C12orf51 283450 broad.mit.edu 36 12 111106701 111106701 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109662 exon60 c.C9936T p.S3312S . . . C12orf51 283450 broad.mit.edu 36 12 111107123 111107123 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109662 exon60 c.G9514A p.G3172R . . . C12orf51 283450 broad.mit.edu 36 12 111132239 111132239 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109662 exon49 c.A7314G p.P2438P . . . IQCD 115811 broad.mit.edu 36 12 112118057 112118057 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138451 exon3 c.C750T p.D250D . . . TPCN1 53373 broad.mit.edu 36 12 112194860 112194860 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017901 exon8 c.T763C p.S255P . . . SDSL 113675 broad.mit.edu 36 12 112357527 112357527 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138432 exon7 c.G454A p.A152T . . . TBX3 6926 broad.mit.edu 36 12 113594056 113594056 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005996 exon7 c.G2145A p.P715P . . . TBX3 6926 broad.mit.edu 36 12 113596469 113596469 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005996 exon6 c.G1594A p.G532S . . . MED13L 23389 broad.mit.edu 36 12 114908550 114908550 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015335 exon19 c.C4242T p.G1414G . . . MED13L 23389 broad.mit.edu 36 12 114942027 114942027 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015335 exon6 c.G759A p.S253S . . . NOS1 4842 broad.mit.edu 36 12 116142290 116142290 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000620 exon27 c.C4143T p.D1381D . . . NOS1 4842 broad.mit.edu 36 12 116194614 116194614 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000620 exon10 c.G1798A p.V600I . . . SRRM4 84530 broad.mit.edu 36 12 118052970 118052970 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194286 exon8 c.G719A p.R240H . . . CCDC60 160777 broad.mit.edu 36 12 118427297 118427297 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178499 exon7 c.G689A p.R230H . . . CCDC60 160777 broad.mit.edu 36 12 118445938 118445938 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178499 exon11 c.G1161T p.R387S . . . CIT 11113 broad.mit.edu 36 12 118652809 118652809 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007174 exon26 c.C3234T p.A1078A . . . GCN1L1 10985 broad.mit.edu 36 12 119051516 119051516 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006836 exon57 c.G7837A p.D2613N . . . GCN1L1 10985 broad.mit.edu 36 12 119105781 119105781 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006836 exon5 c.C400T p.R134X . . . SIRT4 23409 broad.mit.edu 36 12 119226006 119226006 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012240 exon2 c.C259A p.R87S . . . RNF10 9921 broad.mit.edu 36 12 119486037 119486037 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014868 exon10 c.C1573T p.R525C . . . P2RX4 5025 broad.mit.edu 36 12 120155273 120155273 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002560 exon11 c.G1135A p.E379K . . . KDM2B 84678 broad.mit.edu 36 12 120432113 120432113 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032590 exon11 c.C1287T p.G429G . . . ORAI1 84876 broad.mit.edu 36 12 120563696 120563696 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032790 exon2 c.G676A p.V226I . . . CLIP1 6249 broad.mit.edu 36 12 121323446 121323446 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198240 exon24 c.C4108T p.R1370C . . . PITPNM2 57605 broad.mit.edu 36 12 122055838 122055838 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020845 exon6 c.C854T p.P285L . . . LRP6 4040 broad.mit.edu 36 12 12225469 12225469 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002336 exon6 c.C1148T p.A383V . . . SBNO1 55206 broad.mit.edu 36 12 122381796 122381796 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018183 exon7 c.C986T p.T329M . . . SETD8 387893 broad.mit.edu 36 12 122455485 122455485 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020382 exon7 c.C759T p.T253T . . . DDX55 57696 broad.mit.edu 36 12 122665702 122665702 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020936 exon9 c.A842T p.E281V . . . DNAH10 196385 broad.mit.edu 36 12 122831636 122831636 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207437 exon6 c.C495T p.V165V . . . DNAH10 196385 broad.mit.edu 36 12 122979840 122979840 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207437 exon70 c.C12018T p.H4006H . . . NCOR2 9612 broad.mit.edu 36 12 123401128 123401128 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006312 exon30 c.G3823A p.V1275I . . . NCOR2 9612 broad.mit.edu 36 12 123401222 123401222 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006312 exon30 c.C3729T p.D1243D . . . DDX47 51202 broad.mit.edu 36 12 12865491 12865491 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201224 exon3 c.G264T p.E88D . . . TMEM132D 121256 broad.mit.edu 36 12 128750505 128750505 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133448 exon2 c.C771T p.I257I . . . STX2 2054 broad.mit.edu 36 12 129859140 129859140 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194356 exon5 c.C343T p.R115X . . . EP400 57634 broad.mit.edu 36 12 131012194 131012194 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015409 exon2 c.G1077A p.P359P . . . EP400 57634 broad.mit.edu 36 12 131030204 131030204 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015409 exon3 c.G1345A p.A449T . . . EP400 57634 broad.mit.edu 36 12 131117371 131117371 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015409 exon49 c.G8650A p.V2884I . . . POLE 5426 broad.mit.edu 36 12 131764265 131764265 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006231 exon7 c.G692A p.R231H . . . ZNF26 7574 broad.mit.edu 36 12 132097243 132097243 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019591 exon4 c.C705T p.C235C . . . ERP27 121506 broad.mit.edu 36 12 14982225 14982225 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152321 exon2 c.G123A p.T41T . . . CACNA2D4 93589 broad.mit.edu 36 12 1835501 1835501 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172364 exon22 c.G2090A p.R697Q . . . CAPZA3 93661 broad.mit.edu 36 12 18782931 18782931 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033328 exon1 c.C462T p.C154C . . . GYS2 2998 broad.mit.edu 36 12 21648716 21648716 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021957 exon1 c.G78T p.E26D . . . LYRM5 144363 broad.mit.edu 36 12 25248344 25248344 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001660 exon3 c.G104A p.R35H . . . KRAS 3845 broad.mit.edu 36 12 25289551 25289551 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004985 exon2 c.G35A p.G12D KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 . . IFLTD1 160492 broad.mit.edu 36 12 25590603 25590603 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145727 exon2 c.C211T p.L71F . . . ITPR2 3709 broad.mit.edu 36 12 26528004 26528004 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002223 exon42 c.G5906A p.G1969D . . . TULP3 7289 broad.mit.edu 36 12 2917616 2917616 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160408 exon10 c.G1099A p.V367I . . . FAR2 55711 broad.mit.edu 36 12 29341338 29341338 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018099 exon4 c.G483A p.K161K . . . PKP2 5318 broad.mit.edu 36 12 32922359 32922359 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004572 exon3 c.T722G p.L241R . . . ADAMTS20 80070 broad.mit.edu 36 12 42110508 42110508 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025003 exon23 c.C3295T p.R1099X . . . C12orf4 57102 broad.mit.edu 36 12 4497647 4497647 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020374 exon8 c.C871A p.L291M . . . HDAC7 51564 broad.mit.edu 36 12 46465919 46465919 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098416 exon22 c.G2478A p.T826T . . . COL2A1 1280 broad.mit.edu 36 12 46665779 46665779 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033150 exon24 c.G1472A p.R491Q . . . CCNT1 904 broad.mit.edu 36 12 47374084 47374084 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001240 exon9 c.G1180A p.A394T . . . TROAP 10024 broad.mit.edu 36 12 48007340 48007340 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005480 exon8 c.G851A p.R284Q . . . SPATS2 65244 broad.mit.edu 36 12 48174840 48174840 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023071 exon7 c.G314A p.G105D . . . PRPF40B 25766 broad.mit.edu 36 12 48312653 48312653 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031698 exon4 c.C236T p.P79L . . . ACCN2 41 broad.mit.edu 36 12 48757315 48757315 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020039 exon4 c.G611A p.R204Q . . . KCNA5 3741 broad.mit.edu 36 12 5024564 5024564 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002234 exon1 c.G990A p.T330T . . . FIGNL2 401720 broad.mit.edu 36 12 50502192 50502192 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001013690 exon1 c.C273T p.G91G . . . KRT84 3890 broad.mit.edu 36 12 51065479 51065479 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033045 exon1 c.G158A p.R53Q . . . KRT75 9119 broad.mit.edu 36 12 51104769 51104769 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004693 exon9 c.C1455T p.S485S . . . KRT75 9119 broad.mit.edu 36 12 51110629 51110629 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004693 exon5 c.G998A p.R333H . . . KRT78 196374 broad.mit.edu 36 12 51526852 51526852 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173352 exon3 c.G623A p.R208H . . . KRT8 3856 broad.mit.edu 36 12 51578881 51578881 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002273 exon6 c.G1051A p.A351T . . . SOAT2 8435 broad.mit.edu 36 12 51795542 51795542 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003578 exon6 c.A545G p.Y182C . . . ITGB7 3695 broad.mit.edu 36 12 51872803 51872803 + Missense_Mutation SNP C T T rs61754162 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000889 exon13 c.G1885A p.G629S . . . ITGB7 3695 broad.mit.edu 36 12 51874381 51874381 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000889 exon10 c.C1176T p.T392T . . . RARG 5916 broad.mit.edu 36 12 51893695 51893695 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000966 exon8 c.C870T p.D290D . . . ESPL1 9700 broad.mit.edu 36 12 51949893 51949893 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012291 exon3 c.G900A p.L300L . . . ESPL1 9700 broad.mit.edu 36 12 51970967 51970967 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012291 exon25 c.G5440T p.G1814C . . . MAP3K12 7786 broad.mit.edu 36 12 52162104 52162104 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193511 exon13 c.A2468G p.D823G . . . HOXC12 3228 broad.mit.edu 36 12 52635120 52635120 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173860 exon1 c.G140A p.R47H . . . KIAA0748 9840 broad.mit.edu 36 12 53643099 53643099 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098815 exon9 c.C850T p.R284W . . . OR6C1 390321 broad.mit.edu 36 12 54001290 54001290 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005182 exon1 c.C640T p.L214L . . . ITGA7 3679 broad.mit.edu 36 12 54378952 54378952 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144997 exon6 c.G528A p.S176S . . . CDK2 1017 broad.mit.edu 36 12 54648852 54648852 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052827 exon4 c.G339T p.Q113H . . . ERBB3 2065 broad.mit.edu 36 12 54765119 54765119 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005915 exon3 c.G308A p.R103H . . . ESYT1 23344 broad.mit.edu 36 12 54814430 54814430 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015292 exon15 c.C1583T p.A528V . . . SLC39A5 283375 broad.mit.edu 36 12 54915683 54915683 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135195 exon6 c.G877A p.G293R . . . ANKRD52 283373 broad.mit.edu 36 12 54935895 54935895 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173595 exon5 c.C402T p.N134N . . . SPRYD4 283377 broad.mit.edu 36 12 55149367 55149367 + Silent SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207344 exon2 c.C363A p.S121S . . . NACA 4666 broad.mit.edu 36 12 55400602 55400602 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001113203 exon3 c.G979T p.G327C . . . GPR182 11318 broad.mit.edu 36 12 55675308 55675308 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007264 exon2 c.C48T p.T16T . . . NAB2 4665 broad.mit.edu 36 12 55771454 55771454 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005967 exon2 c.C363T p.P121P . . . NAB2 4665 broad.mit.edu 36 12 55773206 55773206 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005967 exon5 c.G1237A p.A413T . . . LRP1 4035 broad.mit.edu 36 12 55881620 55881620 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002332 exon66 c.C10419T p.C3473C . . . R3HDM2 22864 broad.mit.edu 36 12 55949099 55949099 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014925 exon15 c.C1706T p.A569V . . . INHBC 3626 broad.mit.edu 36 12 56129826 56129826 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005538 exon2 c.C813T p.Y271Y . . . VWF 7450 broad.mit.edu 36 12 5973855 5973855 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000552 exon36 c.G6243A p.T2081T . . . GRIP1 23426 broad.mit.edu 36 12 65086351 65086351 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178074 exon15 c.C1807T p.R603C . . . CHD4 1108 broad.mit.edu 36 12 6571930 6571930 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001273 exon19 c.G2838A p.L946L . . . ACRBP 84519 broad.mit.edu 36 12 6617765 6617765 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032489 exon10 c.G1576A p.V526I . . . ING4 51147 broad.mit.edu 36 12 6632126 6632126 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127586 exon5 c.C463A p.P155T . . . ZNF384 171017 broad.mit.edu 36 12 6648614 6648614 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135734 exon10 c.C1176A p.S392S . . . LAG3 3902 broad.mit.edu 36 12 6756768 6756768 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002286 exon6 c.C1135T p.R379C . . . CDCA3 83461 broad.mit.edu 36 12 6828617 6828617 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031299 exon6 c.C658T p.R220W . . . PTPRB 5787 broad.mit.edu 36 12 69251250 69251250 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109754 exon13 c.G3193A p.D1065N . . . PTPN6 5777 broad.mit.edu 36 12 6934687 6934687 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002831 exon5 c.G629A p.R210Q . . . ZFC3H1 196441 broad.mit.edu 36 12 70307874 70307874 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144982 exon21 c.G4054A p.A1352T . . . CLSTN3 9746 broad.mit.edu 36 12 7201846 7201846 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014718 exon18 c.G2773A p.G925S . . . NAV3 89795 broad.mit.edu 36 12 76925331 76925331 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014903 exon8 c.G1882A p.A628T . . . PPP1R12A 4659 broad.mit.edu 36 12 78704335 78704335 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143886 exon22 c.A2596G p.T866A . . . ALX1 8092 broad.mit.edu 36 12 84198317 84198317 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006982 exon1 c.C147T p.C49C . . . CEP290 80184 broad.mit.edu 36 12 87048466 87048466 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025114 exon8 c.G503A p.R168H . . . PHC1 1911 broad.mit.edu 36 12 8981071 8981071 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004426 exon13 c.T2510C p.L837P . . . USP44 84101 broad.mit.edu 36 12 94451560 94451560 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042403 exon2 c.A604G p.K202E . . . ANKS1B 56899 broad.mit.edu 36 12 98724375 98724375 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152788 exon4 c.C607T p.R203C . . . UHRF1BP1L 23074 broad.mit.edu 36 12 98976964 98976964 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015054 exon14 c.C2222T p.P741L . . . UHRF1BP1L 23074 broad.mit.edu 36 12 99016286 99016286 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006947 exon5 c.G503A p.R168H . . . RPLP0 6175 broad.mit.edu 36 12 119118965 119118966 + Frame_Shift_Del DEL AA - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 AA AA AA - AA AA Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002 exon8 c.947_948del p.316_316del . . . GUCY2C 2984 broad.mit.edu 36 12 14696181 14696181 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004963 exon14 c.1584delA p.K528fs . . . OR6C70 390327 broad.mit.edu 36 12 54149271 54149272 + Frame_Shift_Del DEL AT - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 AT AT Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001005499 exon1 c.918_919del p.306_307del . . . TMTC4 84899 broad.mit.edu 36 13 100113320 100113320 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032813 exon5 c.G451A p.G151S . . . C13orf27 93081 broad.mit.edu 36 13 102218637 102218637 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138779 exon4 c.A272G p.Y91C . . . LIG4 3981 broad.mit.edu 36 13 107659788 107659788 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002312 exon2 c.C1830T p.L610L . . . MYO16 23026 broad.mit.edu 36 13 108116491 108116491 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198950 exon2 c.C285T p.D95D . . . COL4A1 1282 broad.mit.edu 36 13 109662799 109662799 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001845 exon6 c.G353A p.G118D . . . CARKD 55739 broad.mit.edu 36 13 110085050 110085050 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018210 exon7 c.G577A p.A193T . . . MCF2L 23263 broad.mit.edu 36 13 112727018 112727018 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024979 exon3 c.G235A p.E79K . . . PROZ 8858 broad.mit.edu 36 13 112874078 112874078 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003891 exon8 c.C861T p.F287F . . . PCID2 55795 broad.mit.edu 36 13 112882494 112882494 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018386 exon11 c.C839T p.A280V . . . ZMYM2 7750 broad.mit.edu 36 13 19503499 19503499 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_197968 exon10 c.C1892T p.A631V . . . TNFRSF19 55504 broad.mit.edu 36 13 23141025 23141025 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148957 exon9 c.C1034T p.T345M . . . MIPEP 4285 broad.mit.edu 36 13 23228743 23228743 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005932 exon18 c.G1985A p.R662H . . . ATP12A 479 broad.mit.edu 36 13 24162762 24162762 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185085 exon7 c.G702A p.T234T . . . ATP12A 479 broad.mit.edu 36 13 24172947 24172947 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185085 exon13 c.G1786A p.A596T . . . ATP8A2 51761 broad.mit.edu 36 13 25061805 25061805 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016529 exon24 c.G2179A p.A727T . . . RNF6 6049 broad.mit.edu 36 13 25687265 25687265 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005977 exon5 c.C754T p.R252C . . . FLT3 2322 broad.mit.edu 36 13 27487369 27487369 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004119 exon22 c.C2678T p.P893L . . . PAN3 255967 broad.mit.edu 36 13 27739485 27739485 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175854 exon12 c.G1739A p.S580N . . . FLT1 2321 broad.mit.edu 36 13 27801855 27801855 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002019 exon19 c.G2604A p.T868T . . . MTUS2 23281 broad.mit.edu 36 13 28497559 28497559 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033602 exon1 c.C754T p.R252C . . . MTUS2 23281 broad.mit.edu 36 13 28498529 28498529 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033602 exon1 c.C1724T p.A575V . . . MTUS2 23281 broad.mit.edu 36 13 28969427 28969427 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033602 exon11 c.G3662A p.R1221H . . . MTUS2 23281 broad.mit.edu 36 13 28970638 28970638 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033602 exon12 c.C3792T p.H1264H . . . SLC7A1 6541 broad.mit.edu 36 13 28989719 28989719 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003045 exon10 c.A1501G p.S501G . . . UBL3 5412 broad.mit.edu 36 13 29244296 29244296 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007106 exon3 c.G176A p.R59Q . . . USPL1 10208 broad.mit.edu 36 13 30130713 30130713 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005800 exon9 c.A2499G p.P833P . . . FRY 10129 broad.mit.edu 36 13 31721675 31721675 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023037 exon49 c.G7021A p.G2341R . . . PDS5B 23047 broad.mit.edu 36 13 32156137 32156137 + Nonsense_Mutation SNP A T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015032 exon11 c.A1180T p.R394X . . . PDS5B 23047 broad.mit.edu 36 13 32204326 32204326 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015032 exon20 c.T2212C p.S738P . . . STARD13 90627 broad.mit.edu 36 13 32579061 32579061 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178006 exon13 c.A3058G p.T1020A . . . DCLK1 9201 broad.mit.edu 36 13 35598142 35598142 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004734 exon2 c.C133T p.R45C . . . SMAD9 4093 broad.mit.edu 36 13 36337876 36337876 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005905 exon4 c.C690T p.Y230Y . . . ALG5 29880 broad.mit.edu 36 13 36437850 36437850 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142364 exon7 c.G545A p.R182H . . . NAA16 79612 broad.mit.edu 36 13 40830462 40830462 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024561 exon11 c.G1110A p.P370P . . . ZC3H13 23091 broad.mit.edu 36 13 45447465 45447465 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015070 exon12 c.C2422T p.R808X . . . CPB2 1361 broad.mit.edu 36 13 45556369 45556369 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016413 exon3 c.C261T p.S87S . . . C13orf18 80183 broad.mit.edu 36 13 45816924 45816924 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025113 exon14 c.C1829T p.T610M . . . KPNA3 3839 broad.mit.edu 36 13 49177759 49177759 + Silent SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002267 exon15 c.A1371C p.G457G . . . THSD1 55901 broad.mit.edu 36 13 51850713 51850713 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018676 exon5 c.G1393A p.E465K . . . VPS36 51028 broad.mit.edu 36 13 51899153 51899153 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016075 exon8 c.A611C p.D204A . . . PCDH8 5100 broad.mit.edu 36 13 52316892 52316892 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032949 exon3 c.C2726T p.A909V . . . LMO7 4008 broad.mit.edu 36 13 75327402 75327402 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005358 exon28 c.T3821C p.V1274A . . . EDNRB 1910 broad.mit.edu 36 13 77390462 77390462 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122659 exon1 c.G248A p.R83H . . . SLITRK1 114798 broad.mit.edu 36 13 83353489 83353489 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052910 exon1 c.G155A p.R52H . . . SLITRK5 26050 broad.mit.edu 36 13 87125699 87125699 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015567 exon2 c.C55T p.H19Y . . . SLITRK5 26050 broad.mit.edu 36 13 87127603 87127603 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015567 exon2 c.C1959T p.G653G . . . STK24 8428 broad.mit.edu 36 13 97932531 97932531 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003576 exon3 c.G355A p.A119T . . . DOCK9 23348 broad.mit.edu 36 13 98347793 98347793 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130050 exon15 c.C1659T p.S553S . . . C13orf31 144811 broad.mit.edu 36 13 43353171 43353171 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128303 exon2 c.50delA p.Q17fs . . . DLK1 8788 broad.mit.edu 36 14 100270682 100270682 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003836 exon5 c.G848A p.R283H . . . DIO3 1735 broad.mit.edu 36 14 101097696 101097696 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001362 exon1 c.G110T p.R37M . . . DIO3 1735 broad.mit.edu 36 14 101098406 101098406 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001362 exon1 c.G820A p.G274S . . . DYNC1H1 1778 broad.mit.edu 36 14 101530892 101530892 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001376 exon13 c.G3286A p.A1096T . . . RAGE 5891 broad.mit.edu 36 14 101765413 101765413 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014226 exon12 c.G1226A p.R409H . . . TRAF3 7187 broad.mit.edu 36 14 102422305 102422305 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145725 exon7 c.C597T p.C199C . . . MARK3 4140 broad.mit.edu 36 14 102993302 102993302 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128919 exon6 c.G483T p.Q161H . . . ZFYVE21 79038 broad.mit.edu 36 14 103263923 103263923 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024071 exon3 c.G277A p.V93M . . . PPP1R13B 23368 broad.mit.edu 36 14 103278882 103278882 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015316 exon10 c.G1182T p.Q394H . . . KIAA0284 283638 broad.mit.edu 36 14 104431198 104431198 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015005 exon15 c.G4028A p.R1343H . . . AHNAK2 113146 broad.mit.edu 36 14 104479564 104479564 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_138420 exon7 c.C13269T p.D4423D . . . OR4K2 390431 broad.mit.edu 36 14 19414986 19414986 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005501 exon1 c.T720C p.C240C . . . OR4K5 79317 broad.mit.edu 36 14 19458872 19458872 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005483 exon1 c.C267T p.H89H . . . TMEM55B 90809 broad.mit.edu 36 14 19997282 19997282 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144568 exon6 c.C613T p.R205C . . . TPPP2 122664 broad.mit.edu 36 14 20569035 20569035 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173846 exon3 c.G198A p.T66T . . . OR5AU1 390445 broad.mit.edu 36 14 20693650 20693650 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004731 exon1 c.C375A p.S125S . . . SUPT16H 11198 broad.mit.edu 36 14 20904513 20904513 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007192 exon8 c.A971G p.D324G . . . METTL3 56339 broad.mit.edu 36 14 21038538 21038538 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019852 exon6 c.C1243T p.R415C . . . SALL2 6297 broad.mit.edu 36 14 21060868 21060868 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005407 exon2 c.G2834A p.C945Y . . . LRP10 26020 broad.mit.edu 36 14 22414910 22414910 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014045 exon5 c.C913T p.R305W . . . PRMT5 10419 broad.mit.edu 36 14 22462189 22462189 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006109 exon13 c.G1396A p.G466R . . . C14orf93 60686 broad.mit.edu 36 14 22537710 22537710 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130708 exon2 c.T363C p.P121P . . . ACIN1 22985 broad.mit.edu 36 14 22619054 22619054 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164814 exon6 c.C1504T p.P502S . . . HOMEZ 57594 broad.mit.edu 36 14 22815843 22815843 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020834 exon2 c.C434T p.A145V . . . SLC22A17 51310 broad.mit.edu 36 14 22891105 22891105 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020372 exon1 c.C159A p.T53T . . . MYH7 4625 broad.mit.edu 36 14 22954770 22954770 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000257 exon35 c.C5065T p.R1689C . . . LRRC16B 90668 broad.mit.edu 36 14 23592790 23592790 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138360 exon2 c.G73A p.V25M . . . CPNE6 9362 broad.mit.edu 36 14 23612700 23612700 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006032 exon3 c.C321T p.L107L . . . FITM1 161247 broad.mit.edu 36 14 23670627 23670627 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203402 exon1 c.G15A p.P5P . . . IPO4 79711 broad.mit.edu 36 14 23722906 23722906 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024658 exon19 c.C1908T p.D636D . . . TM9SF1 10548 broad.mit.edu 36 14 23732117 23732117 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014842 exon3 c.C544T p.R182W . . . TM9SF1 10548 broad.mit.edu 36 14 23733848 23733848 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014842 exon2 c.G218A p.R73H . . . C14orf21 161424 broad.mit.edu 36 14 23844068 23844068 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174913 exon10 c.G1838A p.R613Q . . . ADCY4 196883 broad.mit.edu 36 14 23863411 23863411 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198592 exon16 c.G1850A p.S617N . . . RIPK3 11035 broad.mit.edu 36 14 23875950 23875950 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006871 exon9 c.G1317A p.P439P . . . NYNRIN 57523 broad.mit.edu 36 14 23947345 23947345 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025081 exon3 c.G629A p.G210D . . . FOXG1 2290 broad.mit.edu 36 14 28307520 28307520 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005249 exon1 c.G1284A p.S428S . . . PRKD1 5587 broad.mit.edu 36 14 29175264 29175264 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002742 exon7 c.C1173T p.D391D . . . HECTD1 25831 broad.mit.edu 36 14 30712705 30712705 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015382 exon5 c.G662A p.G221D . . . BAZ1A 11177 broad.mit.edu 36 14 34297765 34297765 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013448 exon25 c.C4282T p.R1428X . . . NKX2-1 7080 broad.mit.edu 36 14 36056645 36056645 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003317 exon2 c.C705T p.G235G . . . SSTR1 6751 broad.mit.edu 36 14 37748646 37748646 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001049 exon3 c.G301A p.A101T . . . C14orf182 283551 broad.mit.edu 36 14 49542128 49542128 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012706 exon1 c.T140A p.V47D . . . SOS2 6655 broad.mit.edu 36 14 49710974 49710974 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006939 exon8 c.G1016A p.R339H . . . MAP4K5 11183 broad.mit.edu 36 14 49959608 49959608 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006575 exon31 c.C2434T p.R812C . . . TRIM9 114088 broad.mit.edu 36 14 50631080 50631080 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052978 exon1 c.G328A p.A110T . . . MAPK1IP1L 93487 broad.mit.edu 36 14 54599508 54599508 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144578 exon3 c.A438G p.G146G . . . KIAA0586 9786 broad.mit.edu 36 14 58019079 58019079 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014749 exon20 c.G2812A p.A938T . . . DACT1 51339 broad.mit.edu 36 14 58183140 58183140 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079520 exon4 c.G1935A p.S645S DACT1,large_intestine,rectum,Substitution - Missense,+1 . . PPM1A 5494 broad.mit.edu 36 14 59819272 59819272 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021003 exon2 c.G98A p.R33H . . . SIX4 51804 broad.mit.edu 36 14 60249956 60249956 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017420 exon3 c.T2268C p.C756C . . . SIX4 51804 broad.mit.edu 36 14 60250365 60250365 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017420 exon3 c.T1859C p.F620S . . . SNAPC1 6617 broad.mit.edu 36 14 61331425 61331425 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003082 exon10 c.A1078T p.T360S . . . KCNH5 27133 broad.mit.edu 36 14 62244563 62244563 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139318 exon11 c.C2383T p.L795F . . . SYNE2 23224 broad.mit.edu 36 14 63592513 63592513 + Silent SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015180 exon49 c.C9843A p.P3281P . . . SYNE2 23224 broad.mit.edu 36 14 63607226 63607226 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015180 exon52 c.A10542G p.L3514L . . . MTHFD1 4522 broad.mit.edu 36 14 63977924 63977924 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005956 exon19 c.G1884T p.E628D . . . HSPA2 3306 broad.mit.edu 36 14 64078223 64078223 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021979 exon1 c.G903A p.T301T . . . SPTB 6710 broad.mit.edu 36 14 64307445 64307445 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024858 exon26 c.G5709A p.A1903A . . . SPTB 6710 broad.mit.edu 36 14 64341454 64341454 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024858 exon2 c.C256T p.R86C . . . GPHN 10243 broad.mit.edu 36 14 66648352 66648352 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024218 exon14 c.C1336T p.R446X . . . ZFYVE26 23503 broad.mit.edu 36 14 67314129 67314129 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015346 exon25 c.C4874T p.A1625V . . . ACTN1 87 broad.mit.edu 36 14 68411460 68411460 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130005 exon21 c.C2533T p.R845C . . . GALNTL1 57452 broad.mit.edu 36 14 68884398 68884398 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020692 exon14 c.G1465A p.A489T . . . SLC8A3 6547 broad.mit.edu 36 14 69703233 69703233 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033262 exon2 c.C1660T p.R554W . . . PCNX 22990 broad.mit.edu 36 14 70645172 70645172 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014982 exon34 c.C6400T p.R2134W . . . DPF3 8110 broad.mit.edu 36 14 72210720 72210720 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012074 exon8 c.C852T p.C284C . . . ZFYVE1 53349 broad.mit.edu 36 14 72511282 72511282 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178441 exon7 c.C700T p.R234W . . . ZFYVE1 53349 broad.mit.edu 36 14 72529762 72529762 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021260 exon4 c.C1045A p.R349S . . . ZFYVE1 53349 broad.mit.edu 36 14 72534487 72534487 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021260 exon3 c.C773T p.A258V . . . PAPLN 89932 broad.mit.edu 36 14 72803209 72803209 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173462 exon24 c.C3336T p.P1112P . . . NUMB 8650 broad.mit.edu 36 14 72829212 72829212 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005744 exon8 c.A433G p.M145V . . . C14orf43 91748 broad.mit.edu 36 14 73273654 73273654 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001043318 exon3 c.C1549T p.R517X . . . ABCD4 5826 broad.mit.edu 36 14 73831624 73831624 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005050 exon7 c.G699A p.A233A . . . ABCD4 5826 broad.mit.edu 36 14 73834405 73834405 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005050 exon4 c.C406T p.R136W . . . VRTN 55237 broad.mit.edu 36 14 73893761 73893761 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018228 exon2 c.G522A p.W174X . . . DLST 1743 broad.mit.edu 36 14 74418413 74418413 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001933 exon1 c.C4T p.L2L . . . MLH3 27030 broad.mit.edu 36 14 74586005 74586005 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040108 exon2 c.C107A p.A36D . . . TTLL5 23093 broad.mit.edu 36 14 75217671 75217671 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015072 exon4 c.G212A p.R71Q . . . NRXN3 9369 broad.mit.edu 36 14 79233789 79233789 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138970 exon4 c.G665A p.R222H . . . SPATA7 55812 broad.mit.edu 36 14 87962342 87962342 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040428 exon5 c.C290T p.P97L . . . PTPN21 11099 broad.mit.edu 36 14 88005100 88005100 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007039 exon18 c.G3309A p.P1103P . . . FOXN3 1112 broad.mit.edu 36 14 88948258 88948258 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085471 exon2 c.G316A p.D106N . . . TTC7B 145567 broad.mit.edu 36 14 90077582 90077582 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010854 exon20 c.C2415T p.G805G . . . CCDC88C 440193 broad.mit.edu 36 14 90849851 90849851 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080414 exon15 c.G2062A p.V688M . . . LGMN 5641 broad.mit.edu 36 14 92242716 92242716 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008530 exon13 c.C1056T p.I352I . . . KIAA1409 57578 broad.mit.edu 36 14 93078653 93078653 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020818 exon14 c.C1082T p.A361V . . . KIAA1409 57578 broad.mit.edu 36 14 93158219 93158219 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020818 exon30 c.C4356T p.S1452S . . . SERPINA3 12 broad.mit.edu 36 14 94150777 94150777 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085 exon2 c.C246T p.T82T . . . C14orf49 161176 broad.mit.edu 36 14 94986157 94986157 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152592 exon7 c.C1313T p.A438V . . . C14orf49 161176 broad.mit.edu 36 14 95003948 95003948 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152592 exon2 c.C254T p.A85V . . . BDKRB2 624 broad.mit.edu 36 14 95776742 95776742 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000623 exon3 c.C324T p.C108C . . . VRK1 7443 broad.mit.edu 36 14 96369658 96369658 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003384 exon2 c.G97A p.A33T . . . WARS 7453 broad.mit.edu 36 14 99897950 99897950 + Missense_Mutation SNP G A A rs2234522 byHapMap TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173701 exon3 c.C161T p.A54V . . . TMEM55B 90809 broad.mit.edu 36 14 19998268 19998268 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_144568 exon3 c.363delA p.K121fs . . . C14orf106 55320 broad.mit.edu 36 14 44780991 44780991 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018353 exon4 c.1139delA p.N380fs . . . NID2 22795 broad.mit.edu 36 14 51543118 51543118 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007361 exon20 c.3891delA p.K1297fs . . . OR4M2 390538 broad.mit.edu 36 15 19870123 19870123 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004719 exon1 c.C184A p.L62M . . . TUBGCP5 114791 broad.mit.edu 36 15 20415776 20415776 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052903 exon16 c.G2293A p.A765T . . . CYFIP1 23191 broad.mit.edu 36 15 20544593 20544593 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014608 exon26 c.C3039T p.S1013S . . . CYFIP1 23191 broad.mit.edu 36 15 20550897 20550897 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014608 exon29 c.C3328T p.R1110C . . . MAGEL2 54551 broad.mit.edu 36 15 21440553 21440553 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019066 exon1 c.C3430T p.R1144W . . . C15orf2 23742 broad.mit.edu 36 15 22472890 22472890 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018958 exon1 c.G783A p.A261A . . . GABRG3 2567 broad.mit.edu 36 15 25446244 25446244 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033223 exon8 c.C936T p.Y312Y . . . HERC2 8924 broad.mit.edu 36 15 26139266 26139266 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004667 exon37 c.C5772T p.Y1924Y . . . NDNL2 56160 broad.mit.edu 36 15 27348984 27348984 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_138704 exon1 c.C218G p.A73G . . . TJP1 7082 broad.mit.edu 36 15 27841165 27841165 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175610 exon7 c.C793T p.R265W . . . FMN1 342184 broad.mit.edu 36 15 30878430 30878430 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103184 exon15 c.C3328T p.R1110X . . . RYR3 6263 broad.mit.edu 36 15 31819449 31819449 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon51 c.C7781T p.A2594V . . . THBS1 7057 broad.mit.edu 36 15 37664994 37664994 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003246 exon7 c.G1058A p.C353Y . . . EIF2AK4 440275 broad.mit.edu 36 15 38019013 38019013 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013703 exon2 c.G160A p.E54K . . . EIF2AK4 440275 broad.mit.edu 36 15 38047228 38047228 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013703 exon9 c.C1409T p.A470V . . . PLCB2 5330 broad.mit.edu 36 15 38377848 38377848 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004573 exon11 c.G1023A p.S341S . . . ZFYVE19 84936 broad.mit.edu 36 15 38892385 38892385 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077268 exon7 c.C1023T p.P341P . . . VPS18 57617 broad.mit.edu 36 15 38982404 38982404 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020857 exon5 c.G2495A p.R832H . . . MAPKBP1 23005 broad.mit.edu 36 15 39890398 39890398 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014994 exon4 c.C232T p.R78W . . . SPTBN5 51332 broad.mit.edu 36 15 39934354 39934354 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016642 exon56 c.G9431A p.R3144H . . . SPTBN5 51332 broad.mit.edu 36 15 39951792 39951792 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016642 exon27 c.G5060A p.R1687Q . . . PLA2G4D 283748 broad.mit.edu 36 15 40151300 40151300 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178034 exon15 c.A1537G p.R513G . . . GANC 2595 broad.mit.edu 36 15 40401505 40401505 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198141 exon11 c.C1288T p.R430C . . . ZFP106 64397 broad.mit.edu 36 15 40528056 40528056 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022473 exon3 c.C2572T p.R858X . . . TMEM62 80021 broad.mit.edu 36 15 41263804 41263804 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024956 exon14 c.C1660T p.R554W . . . EPB42 2038 broad.mit.edu 36 15 41288852 41288852 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114134 exon6 c.C744T p.S248S . . . TGM5 9333 broad.mit.edu 36 15 41332263 41332263 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004245 exon5 c.C602T p.A201V . . . TUBGCP4 27229 broad.mit.edu 36 15 41477575 41477575 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014444 exon13 c.C1324T p.R442W . . . PPIP5K1 9677 broad.mit.edu 36 15 41660765 41660765 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130859 exon8 c.G891A p.L297L . . . CKMT1B 1159 broad.mit.edu 36 15 41678684 41678684 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020990 exon10 c.A1175G p.Y392C . . . ELL3 80237 broad.mit.edu 36 15 41855570 41855570 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025165 exon3 c.C240T p.G80G . . . DUOXA1 90527 broad.mit.edu 36 15 43199685 43199685 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144565 exon8 c.C680T p.A227V . . . DUOX1 53905 broad.mit.edu 36 15 43224419 43224419 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017434 exon19 c.C2171T p.A724V . . . FBN1 2200 broad.mit.edu 36 15 46532056 46532056 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000138 exon45 c.G5540A p.C1847Y . . . FBN1 2200 broad.mit.edu 36 15 46563387 46563387 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000138 exon31 c.A3758T p.Q1253L . . . FBN1 2200 broad.mit.edu 36 15 46583417 46583417 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000138 exon17 c.C1972T p.R658W . . . COPS2 9318 broad.mit.edu 36 15 47207571 47207571 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004236 exon13 c.C1200T p.G400G . . . ATP8B4 79895 broad.mit.edu 36 15 47999805 47999805 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024837 exon18 c.C1853T p.A618V . . . DMXL2 23312 broad.mit.edu 36 15 49617077 49617077 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015263 exon11 c.C1517A p.P506H . . . LEO1 123169 broad.mit.edu 36 15 50031349 50031349 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138792 exon9 c.G1595A p.R532H . . . MYO5C 55930 broad.mit.edu 36 15 50319322 50319322 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018728 exon21 c.C2603T p.A868V . . . WDR72 256764 broad.mit.edu 36 15 51802360 51802360 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182758 exon3 c.C191T p.S64L . . . RAB27A 5873 broad.mit.edu 36 15 53309942 53309942 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004580 exon3 c.G188A p.G63D . . . NEDD4 4734 broad.mit.edu 36 15 53996187 53996187 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198400 exon1 c.C135T p.N45N . . . GCOM1 145781 broad.mit.edu 36 15 55717199 55717199 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152451 exon9 c.G948A p.L316L . . . ALDH1A2 8854 broad.mit.edu 36 15 56041572 56041572 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170697 exon8 c.G893A p.R298Q . . . VPS13C 54832 broad.mit.edu 36 15 60005002 60005002 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017684 exon51 c.C6425T p.T2142M . . . TLN2 83660 broad.mit.edu 36 15 60795943 60795943 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015059 exon20 c.G2756A p.R919Q . . . DAPK2 23604 broad.mit.edu 36 15 62062928 62062928 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014326 exon3 c.G171A p.R57R . . . TRIP4 9325 broad.mit.edu 36 15 62485645 62485645 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016213 exon6 c.G761A p.R254Q . . . ANKDD1A 348094 broad.mit.edu 36 15 63001185 63001185 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182703 exon4 c.G280A p.A94T . . . DPP8 54878 broad.mit.edu 36 15 63580098 63580098 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017743 exon4 c.G445A p.G149R . . . SLC24A1 9187 broad.mit.edu 36 15 63704891 63704891 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004727 exon2 c.C1420T p.R474X . . . DENND4A 10260 broad.mit.edu 36 15 63770249 63770249 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144823 exon23 c.G3734A p.R1245H . . . SMAD3 4088 broad.mit.edu 36 15 65145613 65145613 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005902 exon1 c.C67T p.Q23X . . . CORO2B 10391 broad.mit.edu 36 15 66724590 66724590 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006091 exon2 c.G53A p.R18Q . . . ANP32A 8125 broad.mit.edu 36 15 66866822 66866822 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006305 exon3 c.G311A p.S104N . . . TLE3 7090 broad.mit.edu 36 15 68134600 68134600 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020908 exon15 c.G1393A p.A465T . . . NR2E3 10002 broad.mit.edu 36 15 69892893 69892893 + Silent SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014249 exon6 c.C858A p.A286A . . . ARIH1 25820 broad.mit.edu 36 15 70660252 70660252 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005744 exon12 c.C1342T p.H448Y . . . HCN4 10021 broad.mit.edu 36 15 71409056 71409056 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005477 exon4 c.G1501A p.V501M . . . CYP1A1 1543 broad.mit.edu 36 15 72802341 72802341 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000499 exon2 c.C151T p.H51Y . . . LMAN1L 79748 broad.mit.edu 36 15 72895675 72895675 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021819 exon2 c.G300A p.T100T . . . NEIL1 79661 broad.mit.edu 36 15 73428699 73428699 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_024608 exon2 c.G400T p.G134W . . . MAN2C1 4123 broad.mit.edu 36 15 73441045 73441045 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006715 exon10 c.C1171T p.R391C . . . SGK269 79834 broad.mit.edu 36 15 75260653 75260653 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024776 exon3 c.G671T p.R224L . . . TBC1D2B 23102 broad.mit.edu 36 15 76077688 76077688 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144572 exon13 c.C2761T p.R921C . . . TBC1D2B 23102 broad.mit.edu 36 15 76082842 76082842 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144572 exon11 c.C2434T p.R812W . . . TMED3 23423 broad.mit.edu 36 15 77401390 77401390 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007364 exon3 c.G433A p.V145M . . . ST20 400410 broad.mit.edu 36 15 77978384 77978384 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100879 exon3 c.G184A p.G62S . . . FAH 2184 broad.mit.edu 36 15 78260474 78260474 + Silent SNP G A A rs35033541 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000137 exon13 c.G1098A p.S366S . . . MEX3B 84206 broad.mit.edu 36 15 80123363 80123363 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032246 exon2 c.C903T p.F301F . . . AP3B2 8120 broad.mit.edu 36 15 81132668 81132668 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004644 exon15 c.C1737T p.R579R . . . WHAMM 123720 broad.mit.edu 36 15 81299104 81299104 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080435 exon10 c.C2192T p.A731V . . . WHAMM 123720 broad.mit.edu 36 15 81299263 81299263 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080435 exon10 c.C2351T p.A784V . . . ZNF592 9640 broad.mit.edu 36 15 83128843 83128843 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014630 exon4 c.G1933A p.V645I . . . ALPK3 57538 broad.mit.edu 36 15 83201123 83201123 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020778 exon6 c.C2756A p.P919H . . . MFGE8 4240 broad.mit.edu 36 15 87254137 87254137 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114614 exon2 c.G95A p.C32Y . . . RLBP1 6017 broad.mit.edu 36 15 87561458 87561458 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000326 exon5 c.G243A p.A81A . . . POLG 5428 broad.mit.edu 36 15 87662814 87662814 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126131 exon21 c.C3444T p.R1148R . . . POLG 5428 broad.mit.edu 36 15 87671554 87671554 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126131 exon7 c.G1281A p.M427I . . . C15orf42 90381 broad.mit.edu 36 15 87945739 87945739 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152259 exon11 c.C2263T p.R755C . . . AP3S2 10239 broad.mit.edu 36 15 88255005 88255005 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182616 exon2 c.G143A p.S48N . . . IDH2 3418 broad.mit.edu 36 15 88429144 88429144 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002168 exon10 c.G1179A p.R393R . . . TTLL13 440307 broad.mit.edu 36 15 88602490 88602490 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029964 exon9 c.G1152A p.K384K . . . FES 2242 broad.mit.edu 36 15 89234083 89234083 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143783 exon6 c.A762G p.S254S . . . CHD2 1106 broad.mit.edu 36 15 91329840 91329840 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001271 exon26 c.C3346T p.R1116C . . . IGF1R 3480 broad.mit.edu 36 15 97295743 97295743 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000875 exon16 c.C3124T p.R1042C . . . SYNM 23336 broad.mit.edu 36 15 97489171 97489171 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015286 exon4 c.A3082T p.R1028X . . . LRRK1 79705 broad.mit.edu 36 15 99423908 99423908 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024652 exon32 c.G5743A p.V1915I . . . CHSY1 22856 broad.mit.edu 36 15 99593107 99593107 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014918 exon2 c.C519T p.D173D . . . FURIN 5045 broad.mit.edu 36 15 89224111 89224112 + Frame_Shift_Del DEL AT - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 AT AT AT - AT AT Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002569 exon12 c.1269_1270del p.423_424del . . . PALB2 79728 broad.mit.edu 36 16 23540270 23540271 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024675 exon10 c.3027_3028insC p.P1009fs . . . TEKT5 146279 broad.mit.edu 36 16 10637161 10637161 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144674 exon6 c.G1202A p.R401H . . . CIITA 4261 broad.mit.edu 36 16 10908896 10908896 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000246 exon11 c.C2046T p.S682S . . . CIITA 4261 broad.mit.edu 36 16 10919859 10919859 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000246 exon16 c.C3124T p.L1042F . . . CLEC16A 23274 broad.mit.edu 36 16 11125165 11125165 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015226 exon20 c.G2334A p.A778A . . . CACNA1H 8912 broad.mit.edu 36 16 1208394 1208394 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021098 exon33 c.G5629A p.D1877N . . . TPSD1 23430 broad.mit.edu 36 16 1246326 1246326 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012217 exon1 c.C44T p.A15V . . . CPPED1 55313 broad.mit.edu 36 16 12706055 12706055 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018340 exon3 c.C642T p.D214D . . . NOMO1 23420 broad.mit.edu 36 16 14876514 14876514 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014287 exon19 c.C2175T p.G725G . . . MYH11 4629 broad.mit.edu 36 16 15710191 15710191 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040113 exon42 c.C5816A p.P1939H . . . IFT140 9742 broad.mit.edu 36 16 1574277 1574277 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014714 exon11 c.C1301T p.T434M . . . MYH11 4629 broad.mit.edu 36 16 15783784 15783784 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040114 exon7 c.G706A p.G236S . . . MYH11 4629 broad.mit.edu 36 16 15839297 15839297 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040114 exon2 c.T314C p.L105P . . . ABCC6 368 broad.mit.edu 36 16 16159116 16159116 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171 exon27 c.G3787A p.G1263R . . . SMG1 23049 broad.mit.edu 36 16 18748405 18748405 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015092 exon54 c.G9307A p.G3103R . . . C16orf62 57020 broad.mit.edu 36 16 19570840 19570840 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020314 exon26 c.G2415A p.A805A . . . GPR139 124274 broad.mit.edu 36 16 19950749 19950749 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002911 exon2 c.C871T p.R291W . . . GP2 2813 broad.mit.edu 36 16 20237203 20237203 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007242 exon6 c.C617T p.A206V . . . UMOD 7369 broad.mit.edu 36 16 20265033 20265033 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003361 exon5 c.C1098A p.C366X . . . DNAH3 55567 broad.mit.edu 36 16 20882852 20882852 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017539 exon53 c.G9855A p.T3285T . . . ZP2 7783 broad.mit.edu 36 16 21118639 21118639 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003460 exon15 c.C1756T p.H586Y . . . ZP2 7783 broad.mit.edu 36 16 21130205 21130205 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003460 exon2 c.G75A p.S25S . . . TRAF7 84231 broad.mit.edu 36 16 2161295 2161295 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032271 exon6 c.G378A p.S126S . . . MLST8 64223 broad.mit.edu 36 16 2196584 2196584 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199174 exon4 c.G267A p.A89A . . . ABCA3 21 broad.mit.edu 36 16 2307377 2307377 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001089 exon10 c.G1019A p.R340H . . . SCNN1G 6340 broad.mit.edu 36 16 23108208 23108208 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001039 exon3 c.C333T p.R111R . . . COG7 91949 broad.mit.edu 36 16 23364741 23364741 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153603 exon2 c.G212A p.R71H . . . TNRC6A 27327 broad.mit.edu 36 16 24712428 24712428 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014494 exon7 c.G3309A p.T1103T . . . GTF3C1 2975 broad.mit.edu 36 16 27399956 27399956 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001520 exon27 c.G4141A p.A1381T . . . SRRM2 23524 broad.mit.edu 36 16 2756346 2756346 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016333 exon11 c.C5816T p.T1939M . . . SRRM2 23524 broad.mit.edu 36 16 2759143 2759143 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016333 exon12 c.T7878C p.S2626S . . . XPO6 23214 broad.mit.edu 36 16 28030692 28030692 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015171 exon17 c.G2288A p.R763H . . . ATP2A1 487 broad.mit.edu 36 16 28816916 28816916 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004320 exon13 c.G1514A p.R505Q . . . ATP2A1 487 broad.mit.edu 36 16 28820838 28820838 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004320 exon16 c.G2254A p.A752T . . . SPNS1 83985 broad.mit.edu 36 16 28900342 28900342 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142449 exon5 c.G648A p.V216V . . . SPNS1 83985 broad.mit.edu 36 16 28901345 28901345 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142449 exon6 c.G911A p.R304H . . . PAQR4 124222 broad.mit.edu 36 16 2961660 2961660 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152341 exon3 c.G532A p.G178R . . . SEZ6L2 26470 broad.mit.edu 36 16 29797162 29797162 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001114100 exon8 c.C1317T p.C439C . . . TAOK2 9344 broad.mit.edu 36 16 29900695 29900695 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004783 exon10 c.G764A p.R255Q . . . TAOK2 9344 broad.mit.edu 36 16 29901702 29901702 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004783 exon11 c.C978T p.A326A . . . HIRIP3 8479 broad.mit.edu 36 16 29912177 29912177 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003609 exon7 c.G1523A p.R508H . . . SEPT1 1731 broad.mit.edu 36 16 30298294 30298294 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052838 exon9 c.G723A p.P241P . . . SEPT1 1731 broad.mit.edu 36 16 30299967 30299967 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052838 exon7 c.C540A p.T180T . . . SEPT1 1731 broad.mit.edu 36 16 30300162 30300162 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052838 exon6 c.G439T p.G147W . . . ITGAL 3683 broad.mit.edu 36 16 30393052 30393052 + Silent SNP C G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114380 exon2 c.C96G p.G32G . . . SRCAP 10847 broad.mit.edu 36 16 30652517 30652517 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006662 exon29 c.G6391A p.D2131N . . . SRCAP 10847 broad.mit.edu 36 16 30658310 30658310 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006662 exon34 c.G9448A p.G3150R . . . RNF40 9810 broad.mit.edu 36 16 30687160 30687160 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014771 exon13 c.C1787G p.A596G . . . ZNF629 23361 broad.mit.edu 36 16 30702641 30702641 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080417 exon3 c.G509A p.R170H . . . CTF1 1489 broad.mit.edu 36 16 30818313 30818313 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142544 exon2 c.G99A p.A33A . . . STX4 6810 broad.mit.edu 36 16 30956815 30956815 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004604 exon6 c.G446A p.R149Q . . . ZNF205 7755 broad.mit.edu 36 16 3109812 3109812 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042428 exon7 c.C1150T p.R384C . . . ITGAM 3684 broad.mit.edu 36 16 31240432 31240432 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000632 exon16 c.G1985A p.R662Q . . . ITGAX 3687 broad.mit.edu 36 16 31282141 31282141 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000887 exon14 c.C1655T p.A552V . . . ITGAX 3687 broad.mit.edu 36 16 31299112 31299112 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000887 exon27 c.C3085T p.R1029W . . . ITGAD 3681 broad.mit.edu 36 16 31331973 31331973 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005353 exon16 c.C1901T p.A634V . . . SLC5A2 6524 broad.mit.edu 36 16 31407732 31407732 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003041 exon11 c.G1311A p.S437S . . . ZNF174 7727 broad.mit.edu 36 16 3398609 3398609 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003450 exon3 c.C913T p.R305W . . . NAT15 79903 broad.mit.edu 36 16 3466274 3466274 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083600 exon2 c.C46T p.R16C . . . SLX4 84464 broad.mit.edu 36 16 3580825 3580825 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032444 exon12 c.C2815T p.R939W . . . CREBBP 1387 broad.mit.edu 36 16 3721318 3721318 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004380 exon30 c.G5048A p.R1683H . . . SHCBP1 79801 broad.mit.edu 36 16 45186970 45186970 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024745 exon10 c.G1459A p.A487T . . . VPS35 55737 broad.mit.edu 36 16 45270445 45270445 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018206 exon6 c.C631T p.R211X . . . GLYR1 84656 broad.mit.edu 36 16 4802114 4802114 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032569 exon13 c.C1256T p.A419V . . . ZNF423 23090 broad.mit.edu 36 16 48228694 48228694 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015069 exon5 c.G1870A p.A624T . . . PPL 5493 broad.mit.edu 36 16 4880288 4880288 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002705 exon18 c.C2211T p.R737R . . . PPL 5493 broad.mit.edu 36 16 4883576 4883576 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002705 exon13 c.C1459T p.R487W . . . CHD9 80205 broad.mit.edu 36 16 51859453 51859453 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025134 exon22 c.G4631A p.R1544Q . . . CHD9 80205 broad.mit.edu 36 16 51895585 51895585 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025134 exon31 c.C6166A p.P2056T . . . RBL2 5934 broad.mit.edu 36 16 52081569 52081569 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005611 exon22 c.A3276G p.I1092M . . . RHBDF1 64285 broad.mit.edu 36 16 54721 54721 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022450 exon3 c.C224T p.T75M . . . OGFOD1 55239 broad.mit.edu 36 16 55059409 55059409 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018233 exon8 c.T878A p.I293N . . . NUP93 9688 broad.mit.edu 36 16 55349971 55349971 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014669 exon3 c.G200A p.R67Q . . . CPNE2 221184 broad.mit.edu 36 16 55728688 55728688 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152727 exon14 c.C1295T p.T432M . . . FAM192A 80011 broad.mit.edu 36 16 55745778 55745778 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024946 exon7 c.C690T p.S230S . . . ARL2BP 23568 broad.mit.edu 36 16 55840056 55840056 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012106 exon3 c.C207T p.Y69Y . . . CIAPIN1 57019 broad.mit.edu 36 16 56032222 56032222 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020313 exon2 c.C120T p.G40G . . . GPR56 9289 broad.mit.edu 36 16 56246874 56246874 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145774 exon7 c.G831A p.T277T . . . GPR56 9289 broad.mit.edu 36 16 56248793 56248793 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145774 exon11 c.C1175T p.S392L . . . CNGB1 1258 broad.mit.edu 36 16 56488890 56488890 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001297 exon31 c.A3154G p.T1052A . . . CNGB1 1258 broad.mit.edu 36 16 56506665 56506665 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001297 exon23 c.C2293A p.R765S . . . CNOT1 23019 broad.mit.edu 36 16 57116751 57116751 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016284 exon46 c.C6617A p.P2206H . . . CNOT1 23019 broad.mit.edu 36 16 57135260 57135260 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206999 exon31 c.G4186A p.A1396T . . . CDH8 1006 broad.mit.edu 36 16 60408915 60408915 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001796 exon7 c.C1246T p.R416C . . . CES2 8824 broad.mit.edu 36 16 65531899 65531899 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198061 exon5 c.C808T p.R270C . . . ELMO3 79767 broad.mit.edu 36 16 65793409 65793409 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024712 exon12 c.G1238A p.R413H . . . SLC9A5 6553 broad.mit.edu 36 16 65844176 65844176 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004594 exon2 c.G418A p.V140M . . . SLC7A6OS 84138 broad.mit.edu 36 16 66902012 66902012 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032178 exon2 c.A198G p.E66E . . . WDR24 84219 broad.mit.edu 36 16 679516 679516 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032259 exon1 c.C126T p.V42V . . . FUK 197258 broad.mit.edu 36 16 69060708 69060708 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_145059 exon10 c.C936T p.R312R . . . HYDIN 54768 broad.mit.edu 36 16 69470825 69470825 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon62 c.C10430T p.T3477M . . . HYDIN 54768 broad.mit.edu 36 16 69533121 69533121 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon43 c.C6769T p.R2257W . . . HYDIN 54768 broad.mit.edu 36 16 69546935 69546935 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon40 c.G6157A p.V2053I . . . HYDIN 54768 broad.mit.edu 36 16 69551093 69551093 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon39 c.C6097T p.R2033W . . . ZNF19 7567 broad.mit.edu 36 16 70067532 70067532 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006961 exon6 c.A419G p.D140G . . . MARVELD3 91862 broad.mit.edu 36 16 70231935 70231935 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017967 exon3 c.G737A p.G246D . . . DHODH 1723 broad.mit.edu 36 16 70603618 70603618 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001361 exon2 c.C190A p.L64M . . . HP 3240 broad.mit.edu 36 16 70652182 70652182 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126102 exon5 c.G936A p.A312A . . . DHX38 9785 broad.mit.edu 36 16 70700844 70700844 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014003 exon25 c.C3411T p.D1137D . . . ZFHX3 463 broad.mit.edu 36 16 71385525 71385525 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006885 exon9 c.G8557A p.A2853T . . . ZFHX3 463 broad.mit.edu 36 16 71481240 71481240 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006885 exon4 c.G3339A p.Q1113Q . . . NARFL 64428 broad.mit.edu 36 16 723356 723356 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022493 exon7 c.C766T p.P256S . . . RBFOX1 54715 broad.mit.edu 36 16 7323011 7323011 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145893 exon1 c.C8T p.A3V . . . BCAR1 9564 broad.mit.edu 36 16 73826429 73826429 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170716 exon5 c.C1923T p.P641P . . . TMEM231 79583 broad.mit.edu 36 16 74134015 74134015 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077416 exon4 c.A737G p.Y246C . . . KARS 3735 broad.mit.edu 36 16 74220912 74220912 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130089 exon13 c.C1537T p.R513C . . . CNTNAP4 85445 broad.mit.edu 36 16 75131204 75131204 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033401 exon20 c.T3307C p.F1103L . . . PKD1L2 114780 broad.mit.edu 36 16 79790066 79790066 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052892 exon7 c.G1245A p.Q415Q . . . GAN 8139 broad.mit.edu 36 16 79945671 79945671 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022041 exon3 c.A443G p.H148R . . . NECAB2 54550 broad.mit.edu 36 16 82569600 82569600 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019065 exon3 c.G277A p.V93I . . . LRRC50 123872 broad.mit.edu 36 16 82756899 82756899 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178452 exon7 c.G873A p.A291A . . . KCNG4 93107 broad.mit.edu 36 16 82828176 82828176 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172347 exon2 c.C417T p.C139C . . . USP10 9100 broad.mit.edu 36 16 83336054 83336054 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005153 exon4 c.C466T p.P156S . . . CRISPLD2 83716 broad.mit.edu 36 16 83441685 83441685 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031476 exon5 c.C503T p.A168V . . . IRF8 3394 broad.mit.edu 36 16 84511269 84511269 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002163 exon8 c.C1042T p.L348L . . . MTHFSD 64779 broad.mit.edu 36 16 85123387 85123387 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022764 exon8 c.G880T p.G294C . . . FBXO31 79791 broad.mit.edu 36 16 85922460 85922460 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024735 exon9 c.G1555A p.A519T . . . FBXO31 79791 broad.mit.edu 36 16 85922527 85922527 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024735 exon9 c.C1488T p.F496F . . . ZC3H18 124245 broad.mit.edu 36 16 87224399 87224399 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144604 exon17 c.C2572T p.R858W . . . ANKRD11 29123 broad.mit.edu 36 16 87874479 87874479 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013275 exon9 c.C5972A p.P1991Q . . . ANKRD11 29123 broad.mit.edu 36 16 87876764 87876764 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013275 exon9 c.G3687A p.T1229T . . . DPEP1 1800 broad.mit.edu 36 16 88224321 88224321 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004413 exon2 c.T2C p.M1T . . . ZNF276 92822 broad.mit.edu 36 16 88327866 88327866 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001113525 exon9 c.C1393T p.R465W . . . GRIN2A 2903 broad.mit.edu 36 16 9939856 9939856 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001134408 exon3 c.G468A p.T156T . . . ITGAX 3687 broad.mit.edu 36 16 31281487 31281487 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000887 exon12 c.1271delC p.A424fs . . . PRDM7 11105 broad.mit.edu 36 16 88652237 88652237 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098173 exon10 c.1440delA p.K480fs . . . PLSCR3 57048 broad.mit.edu 36 17 7237865 7237866 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020360 exon3 c.22_23insC p.K8fs . . . MYH8 4626 broad.mit.edu 36 17 10243603 10243603 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002472 exon28 c.C3844T p.R1282C . . . MYH2 4620 broad.mit.edu 36 17 10370820 10370820 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100112 exon30 c.G4008A p.A1336A . . . MYH3 4621 broad.mit.edu 36 17 10496576 10496576 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002470 exon3 c.C234T p.Y78Y . . . PIRT 644139 broad.mit.edu 36 17 10669519 10669519 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101387 exon2 c.G169A p.V57I . . . DNAH9 1770 broad.mit.edu 36 17 11534462 11534462 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001372 exon20 c.G4598A p.R1533Q . . . DNAH9 1770 broad.mit.edu 36 17 11591654 11591654 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001372 exon32 c.C6456T p.G2152G . . . DNAH9 1770 broad.mit.edu 36 17 11806154 11806154 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004662 exon14 c.G2025T p.T675T . . . MAP2K4 6416 broad.mit.edu 36 17 11973206 11973206 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003010 exon9 c.C917A p.P306H . . . ELAC2 60528 broad.mit.edu 36 17 12837022 12837022 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165962 exon23 c.C2199T p.G733G . . . CDRT15 146822 broad.mit.edu 36 17 14080721 14080721 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007530 exon1 c.T155C p.L52P . . . HS3ST3B1 9953 broad.mit.edu 36 17 14189118 14189118 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006041 exon2 c.G603A p.T201T . . . RILP 83547 broad.mit.edu 36 17 1497958 1497958 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031430 exon6 c.G865A p.A289T . . . TEKT3 64518 broad.mit.edu 36 17 15172073 15172073 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031898 exon4 c.C624T p.I208I . . . RAI1 10743 broad.mit.edu 36 17 17640160 17640160 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030665 exon3 c.G3173A p.R1058H . . . MYO15A 51168 broad.mit.edu 36 17 17980663 17980663 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016239 exon14 c.G4717A p.A1573T . . . FLII 2314 broad.mit.edu 36 17 18089265 18089265 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002018 exon30 c.G3722A p.R1241Q . . . FLII 2314 broad.mit.edu 36 17 18098169 18098169 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002018 exon7 c.C628T p.R210C . . . TOP3A 7156 broad.mit.edu 36 17 18135053 18135053 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004618 exon12 c.G1295A p.R432Q . . . MNT 4335 broad.mit.edu 36 17 2237292 2237292 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020310 exon6 c.G1402A p.A468T . . . METT10D 79066 broad.mit.edu 36 17 2270829 2270829 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024086 exon9 c.G1008A p.A336A . . . NOS2 4843 broad.mit.edu 36 17 23117672 23117672 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000625 exon19 c.C2237T p.P746L . . . NOS2 4843 broad.mit.edu 36 17 23130173 23130173 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000625 exon10 c.C1041T p.Y347Y . . . KIAA0100 9703 broad.mit.edu 36 17 23985914 23985914 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014680 exon16 c.C2818T p.R940C . . . SUPT6H 6830 broad.mit.edu 36 17 24038479 24038479 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003170 exon23 c.G2869A p.A957T . . . SUPT6H 6830 broad.mit.edu 36 17 24049088 24049088 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003170 exon32 c.A4361C p.K1454T . . . SUPT6H 6830 broad.mit.edu 36 17 24052765 24052765 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003170 exon37 c.C5176T p.R1726W . . . TRAF4 9618 broad.mit.edu 36 17 24099036 24099036 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004295 exon3 c.C244T p.R82C . . . C17orf63 55731 broad.mit.edu 36 17 24109816 24109816 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077498 exon3 c.A1287G p.R429R . . . EFCAB5 374786 broad.mit.edu 36 17 25344458 25344458 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145053 exon5 c.A749C p.K250T . . . KIAA0664 23277 broad.mit.edu 36 17 2541684 2541684 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015229 exon25 c.G3715A p.V1239I . . . KIAA0664 23277 broad.mit.edu 36 17 2544553 2544553 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015229 exon17 c.C2791T p.R931W . . . ATAD5 79915 broad.mit.edu 36 17 26244981 26244981 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024857 exon21 c.C4984A p.L1662I . . . ADAP2 55803 broad.mit.edu 36 17 26307393 26307393 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018404 exon10 c.C891T p.F297F . . . C17orf97 400566 broad.mit.edu 36 17 263510 263510 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013672 exon2 c.G560A p.R187H . . . RAB11FIP4 84440 broad.mit.edu 36 17 26872439 26872439 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032932 exon5 c.C699T p.C233C . . . CDK5R1 8851 broad.mit.edu 36 17 27839164 27839164 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003885 exon2 c.C413T p.T138M . . . MYO1D 4642 broad.mit.edu 36 17 28072203 28072203 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015194 exon15 c.C1864T p.R622C . . . SLFN11 91607 broad.mit.edu 36 17 30714069 30714069 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001104589 exon3 c.C871T p.R291C . . . MYO19 80179 broad.mit.edu 36 17 31930890 31930890 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163735 exon24 c.G2270A p.R757H . . . SYNRG 11276 broad.mit.edu 36 17 33010627 33010627 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007247 exon8 c.G826A p.V276M . . . MRPL45 84311 broad.mit.edu 36 17 33731694 33731694 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032351 exon7 c.G819T p.K273N . . . PIP4K2B 8396 broad.mit.edu 36 17 34190301 34190301 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003559 exon4 c.G437A p.R146H . . . TRPV1 7442 broad.mit.edu 36 17 3440402 3440402 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018727 exon5 c.G638A p.R213H . . . CACNB1 782 broad.mit.edu 36 17 34593534 34593534 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000723 exon11 c.G1008A p.S336S . . . CDK12 51755 broad.mit.edu 36 17 34940519 34940519 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016507 exon14 c.C3897T p.A1299A . . . CDK12 51755 broad.mit.edu 36 17 34940888 34940888 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016507 exon14 c.G4266T p.K1422N . . . ERBB2 2064 broad.mit.edu 36 17 35120147 35120147 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001005862 exon10 c.T698C p.I233T . . . GRB7 2886 broad.mit.edu 36 17 35153210 35153210 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005310 exon6 c.C624T p.L208L . . . NR1D1 9572 broad.mit.edu 36 17 35504722 35504722 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021724 exon6 c.A1426G p.T476A . . . NR1D1 9572 broad.mit.edu 36 17 35505565 35505565 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021724 exon5 c.C906T p.Y302Y . . . KRTAP3-1 83896 broad.mit.edu 36 17 36418635 36418635 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031958 exon1 c.C218T p.P73L . . . KRTAP4-1 85285 broad.mit.edu 36 17 36594236 36594236 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033060 exon2 c.C340T p.R114C . . . KRT33B 3884 broad.mit.edu 36 17 36775316 36775316 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002279 exon4 c.C604T p.R202C . . . KRT31 3881 broad.mit.edu 36 17 36806298 36806298 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002277 exon3 c.G488A p.R163H . . . KRT36 8689 broad.mit.edu 36 17 36899256 36899256 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003771 exon1 c.C387T p.Y129Y . . . KRT9 3857 broad.mit.edu 36 17 36977519 36977519 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000226 exon7 c.C1404T p.S468S . . . CAMKK1 84254 broad.mit.edu 36 17 3722614 3722614 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032294 exon12 c.C1107T p.P369P . . . ACLY 47 broad.mit.edu 36 17 37323624 37323624 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198830 exon2 c.C29T p.T10M . . . PTRF 284119 broad.mit.edu 36 17 37810368 37810368 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_012232 exon2 c.G1036A p.A346T . . . PTRF 284119 broad.mit.edu 36 17 37810752 37810752 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012232 exon2 c.G652A p.A218T . . . COASY 80347 broad.mit.edu 36 17 37971244 37971244 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042529 exon9 c.C1527T p.A509A . . . TUBG1 7283 broad.mit.edu 36 17 38020407 38020407 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001070 exon11 c.G1178A p.R393H . . . TUBG2 27175 broad.mit.edu 36 17 38071930 38071930 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016437 exon10 c.G1060A p.A354T . . . BECN1 8678 broad.mit.edu 36 17 38219533 38219533 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003766 exon10 c.G1000A p.G334R . . . AOC2 314 broad.mit.edu 36 17 38251281 38251281 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001158 exon1 c.C1112T p.P371L . . . DHX8 1659 broad.mit.edu 36 17 38926387 38926387 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004941 exon7 c.T912C p.G304G . . . ETV4 2118 broad.mit.edu 36 17 38963011 38963011 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001986 exon9 c.C876T p.D292D . . . MPP2 4355 broad.mit.edu 36 17 39310861 39310861 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005374 exon13 c.G1499A p.R500Q . . . ZZEF1 23140 broad.mit.edu 36 17 3938732 3938732 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015113 exon13 c.G2230A p.A744T . . . SLC4A1 6521 broad.mit.edu 36 17 39690408 39690408 + Missense_Mutation SNP C T T rs28931584 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000342 exon13 c.G1462A p.V488M . . . FZD2 2535 broad.mit.edu 36 17 39991927 39991927 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001466 exon1 c.G1345A p.G449S . . . ANKFY1 51479 broad.mit.edu 36 17 4024060 4024060 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016376 exon20 c.G2819A p.R940H . . . FMNL1 752 broad.mit.edu 36 17 40674784 40674784 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005892 exon14 c.G1585T p.D529Y . . . C17orf46 124783 broad.mit.edu 36 17 40688760 40688760 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152343 exon4 c.C572T p.P191L . . . C17orf46 124783 broad.mit.edu 36 17 40688840 40688840 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152343 exon4 c.C492A p.I164I . . . GOSR2 9570 broad.mit.edu 36 17 42367620 42367620 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012511 exon5 c.C563T p.T188M . . . NPEPPS 9520 broad.mit.edu 36 17 42978284 42978284 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006310 exon2 c.C266T p.A89V . . . NPEPPS 9520 broad.mit.edu 36 17 43050736 43050736 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006310 exon20 c.C2317T p.Q773X . . . SP6 80320 broad.mit.edu 36 17 43280740 43280740 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199262 exon2 c.G55A p.A19T . . . NFE2L1 4779 broad.mit.edu 36 17 43489845 43489845 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003204 exon5 c.G954A p.M318I . . . HOXB1 3211 broad.mit.edu 36 17 43963005 43963005 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002144 exon1 c.C261T p.A87A . . . SPOP 8405 broad.mit.edu 36 17 45034312 45034312 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007229 exon10 c.C894T p.S298S . . . ITGA3 3675 broad.mit.edu 36 17 45506821 45506821 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002204 exon10 c.G1393A p.V465I . . . SAMD14 201191 broad.mit.edu 36 17 45548257 45548257 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174920 exon6 c.C598T p.R200C . . . COL1A1 1277 broad.mit.edu 36 17 45623237 45623237 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000088 exon33 c.C2283T p.G761G . . . CXCL16 58191 broad.mit.edu 36 17 4585149 4585149 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100812 exon4 c.G762A p.P254P . . . RSAD1 55316 broad.mit.edu 36 17 45915823 45915823 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018346 exon6 c.G1028A p.R343H . . . EPN3 55040 broad.mit.edu 36 17 45973666 45973666 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017957 exon8 c.C1327T p.P443S . . . CACNA1G 8913 broad.mit.edu 36 17 46049871 46049871 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198382 exon28 c.G5026A p.A1676T . . . SPAG9 9043 broad.mit.edu 36 17 46403171 46403171 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003971 exon28 c.C3704T p.T1235M . . . CHRNE 1145 broad.mit.edu 36 17 4742908 4742908 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000080 exon12 c.G1384A p.A462T . . . ENO3 2027 broad.mit.edu 36 17 4800125 4800125 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053013 exon9 c.G1030A p.V344I . . . CAMTA2 23125 broad.mit.edu 36 17 4816794 4816794 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015099 exon15 c.G2497T p.D833Y . . . KIF1C 10749 broad.mit.edu 36 17 4864610 4864610 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006612 exon20 c.C1850T p.P617L . . . KIF1C 10749 broad.mit.edu 36 17 4866650 4866650 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006612 exon22 c.G2550A p.Q850Q . . . ANKFN1 162282 broad.mit.edu 36 17 51786391 51786391 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153228 exon5 c.C595T p.R199X . . . SCPEP1 59342 broad.mit.edu 36 17 52434446 52434446 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021626 exon12 c.G1201A p.A401T . . . BZRAP1 9256 broad.mit.edu 36 17 53743370 53743370 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004758 exon19 c.C3285G p.S1095R . . . NLRP1 22861 broad.mit.edu 36 17 5374706 5374706 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033007 exon11 c.G3249A p.T1083T . . . SUPT4H1 6827 broad.mit.edu 36 17 53779936 53779936 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003168 exon3 c.C185T p.A62V . . . MTMR4 9110 broad.mit.edu 36 17 53924119 53924119 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004687 exon19 c.C3492T p.L1164L . . . TEX14 56155 broad.mit.edu 36 17 54005659 54005659 + Silent SNP C T T rs55768547 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198393 exon24 c.G3513A p.T1171T . . . TRIM37 4591 broad.mit.edu 36 17 54520515 54520515 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005207 exon4 c.G200A p.R67H . . . DHX40 79665 broad.mit.edu 36 17 55039290 55039290 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024612 exon18 c.G2315A p.S772N . . . TMEM49 81671 broad.mit.edu 36 17 55270499 55270499 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030938 exon11 c.C1036T p.R346W . . . TBX4 9496 broad.mit.edu 36 17 56915574 56915574 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018488 exon8 c.A1553G p.Y518C . . . MED13 9969 broad.mit.edu 36 17 57393217 57393217 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005121 exon23 c.G5273A p.R1758Q . . . MARCH10 162333 broad.mit.edu 36 17 58219643 58219643 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100875 exon3 c.G140A p.R47H . . . FTSJ3 117246 broad.mit.edu 36 17 59255006 59255006 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017647 exon13 c.G1193A p.R398Q . . . GEMIN4 50628 broad.mit.edu 36 17 596086 596086 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015721 exon2 c.C1947T p.D649D . . . WSCD1 23302 broad.mit.edu 36 17 5962232 5962232 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015253 exon8 c.G1375T p.E459X . . . LRRC37A3 374819 broad.mit.edu 36 17 60286325 60286325 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199340 exon11 c.G4401A p.S1467S . . . PRKCA 5578 broad.mit.edu 36 17 62215446 62215446 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002737 exon16 c.C1741T p.L581L . . . PITPNM3 83394 broad.mit.edu 36 17 6314402 6314402 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031220 exon13 c.C1675T p.P559S . . . NOL11 25926 broad.mit.edu 36 17 63150704 63150704 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015462 exon6 c.C597G p.D199E . . . BPTF 2186 broad.mit.edu 36 17 63338959 63338959 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182641 exon11 c.T4497C p.D1499D . . . BPTF 2186 broad.mit.edu 36 17 63372200 63372200 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182641 exon21 c.T6914C p.V2305A . . . FAM20A 54757 broad.mit.edu 36 17 64051450 64051450 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017565 exon5 c.C727T p.R243X . . . ABCA9 10350 broad.mit.edu 36 17 64498587 64498587 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080283 exon29 c.C3823T p.R1275X . . . ABCA5 23461 broad.mit.edu 36 17 64820931 64820931 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172232 exon3 c.T204C p.P68P . . . SLC13A5 284111 broad.mit.edu 36 17 6557304 6557304 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143838 exon1 c.C73T p.L25L . . . COG1 9382 broad.mit.edu 36 17 68709155 68709155 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018714 exon7 c.C1594A p.L532I . . . SDK2 54549 broad.mit.edu 36 17 68893628 68893628 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144952 exon32 c.C4522A p.L1508I . . . SDK2 54549 broad.mit.edu 36 17 68930076 68930076 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144952 exon15 c.C1990T p.R664C . . . TTYH2 94015 broad.mit.edu 36 17 69767881 69767881 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032646 exon14 c.G1543A p.A515T . . . DNAI2 64446 broad.mit.edu 36 17 69812977 69812977 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023036 exon9 c.G1012A p.E338K . . . KIF19 124602 broad.mit.edu 36 17 69860959 69860959 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153209 exon16 c.C2144G p.T715S . . . CD300LF 146722 broad.mit.edu 36 17 70203560 70203560 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139018 exon6 c.G616A p.A206T . . . SLC9A3R1 9368 broad.mit.edu 36 17 70276264 70276264 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004252 exon6 c.C951T p.S317S . . . GRIN2C 2905 broad.mit.edu 36 17 70362735 70362735 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000835 exon2 c.C92T p.T31M . . . OTOP3 347741 broad.mit.edu 36 17 70449182 70449182 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178233 exon2 c.C173T p.A58V . . . NUP85 79902 broad.mit.edu 36 17 70739034 70739034 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024844 exon12 c.G1099A p.A367T . . . PHF23 79142 broad.mit.edu 36 17 7080423 7080423 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024297 exon4 c.C547T p.R183X . . . RECQL5 9400 broad.mit.edu 36 17 71168669 71168669 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003715 exon6 c.C947T p.T316I . . . UNK 85451 broad.mit.edu 36 17 71320823 71320823 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080419 exon6 c.G920A p.G307D . . . EVPL 2125 broad.mit.edu 36 17 71516293 71516293 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001988 exon22 c.C4588A p.R1530S . . . EVPL 2125 broad.mit.edu 36 17 71517047 71517047 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001988 exon22 c.C3834T p.N1278N . . . EXOC7 23265 broad.mit.edu 36 17 71595349 71595349 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145299 exon13 c.C1479T p.G493G . . . NEURL4 84461 broad.mit.edu 36 17 7161922 7161922 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032442 exon26 c.C4114T p.R1372W . . . NEURL4 84461 broad.mit.edu 36 17 7170874 7170874 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032442 exon4 c.C972T p.C324C . . . QRICH2 84074 broad.mit.edu 36 17 71801533 71801533 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032134 exon4 c.C372T p.G124G . . . RHBDF2 79651 broad.mit.edu 36 17 71979612 71979612 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024599 exon19 c.C2269A p.L757I . . . MFSD11 79157 broad.mit.edu 36 17 72286004 72286004 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024311 exon14 c.G1325A p.R442H . . . NLGN2 57555 broad.mit.edu 36 17 7256231 7256231 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020795 exon2 c.G489A p.T163T . . . AMAC1L3 643664 broad.mit.edu 36 17 7326521 7326521 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102614 exon2 c.G494A p.S165N . . . POLR2A 5430 broad.mit.edu 36 17 7356525 7356525 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000937 exon27 c.G4498T p.G1500C . . . FXR2 9513 broad.mit.edu 36 17 7445505 7445505 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004860 exon7 c.C607T p.R203C . . . CBX2 84733 broad.mit.edu 36 17 75372278 75372278 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005189 exon5 c.C441T p.A147A . . . WRAP53 55135 broad.mit.edu 36 17 7547397 7547397 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143990 exon11 c.G1515A p.T505T . . . EIF4A3 9775 broad.mit.edu 36 17 75735188 75735188 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014740 exon1 c.C168T p.Y56Y . . . SLC26A11 284129 broad.mit.edu 36 17 75814278 75814278 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166349 exon5 c.G561A p.V187V . . . RNF213 57674 broad.mit.edu 36 17 75938707 75938707 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020914 exon32 c.C10247T p.T3416M . . . RNF213 57674 broad.mit.edu 36 17 75956171 75956171 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020914 exon44 c.C12047T p.T4016M . . . RNF213 57674 broad.mit.edu 36 17 75974726 75974726 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020914 exon63 c.G14768A p.R4923Q . . . P4HB 5034 broad.mit.edu 36 17 77410438 77410438 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000918 exon2 c.A260T p.E87V . . . CHD3 1107 broad.mit.edu 36 17 7743419 7743419 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005852 exon15 c.C2377A p.P793T . . . NOTUM 147111 broad.mit.edu 36 17 77504400 77504400 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178493 exon11 c.G1218A p.S406S . . . FASN 2194 broad.mit.edu 36 17 77634375 77634375 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004104 exon32 c.G5557A p.V1853I . . . CNTROB 116840 broad.mit.edu 36 17 7778217 7778217 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053051 exon2 c.C307T p.R103W . . . CSNK1D 1453 broad.mit.edu 36 17 77804267 77804267 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139062 exon4 c.G479C p.R160P . . . FOXK2 3607 broad.mit.edu 36 17 78133986 78133986 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004514 exon5 c.G990A p.S330S . . . GUCY2D 3000 broad.mit.edu 36 17 7847966 7847966 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000180 exon3 c.G793A p.E265K . . . SLC25A35 399512 broad.mit.edu 36 17 8134024 8134024 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201520 exon5 c.C733T p.R245X . . . KRBA2 124751 broad.mit.edu 36 17 8214103 8214103 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213597 exon2 c.C553T p.R185W . . . KRBA2 124751 broad.mit.edu 36 17 8214275 8214275 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213597 exon2 c.C381T p.S127S . . . WDR16 146845 broad.mit.edu 36 17 9487152 9487152 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145054 exon14 c.G1775A p.R592H . . . RCVRN 5957 broad.mit.edu 36 17 9745095 9745095 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002903 exon2 c.C429T p.D143D . . . WNK4 65266 broad.mit.edu 36 17 38192974 38192975 + Frame_Shift_Del DEL TG - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 TG TG TG - TG TG Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032387 exon7 c.1629_1630del p.543_544del . . . TSPAN10 83882 broad.mit.edu 36 17 77222722 77222722 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031945 exon2 c.336delG p.L112fs . . . MC5R 4161 broad.mit.edu 36 18 13816537 13816537 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005913 exon1 c.T773C p.L258P . . . ROCK1 6093 broad.mit.edu 36 18 16820983 16820983 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005406 exon19 c.C2230A p.L744I . . . GATA6 2627 broad.mit.edu 36 18 18015421 18015421 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005257 exon4 c.C1312T p.R438W . . . TTC39C 125488 broad.mit.edu 36 18 19966465 19966465 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135993 exon14 c.G1681A p.D561N . . . ZNF521 25925 broad.mit.edu 36 18 21060875 21060875 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015461 exon4 c.G1005A p.P335P . . . PSMA8 143471 broad.mit.edu 36 18 22012807 22012807 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144662 exon5 c.C511T p.R171X . . . CDH2 1000 broad.mit.edu 36 18 23822524 23822524 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001792 exon11 c.A1703G p.N568S . . . DSC1 1823 broad.mit.edu 36 18 26990084 26990084 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004948 exon4 c.C391T p.R131C . . . DSG4 147409 broad.mit.edu 36 18 27220730 27220730 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134453 exon3 c.G166A p.A56T . . . DSG4 147409 broad.mit.edu 36 18 27246843 27246843 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134453 exon15 c.C2467G p.L823V . . . DSG3 1830 broad.mit.edu 36 18 27300691 27300691 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001944 exon11 c.G1612A p.V538I . . . DSG3 1830 broad.mit.edu 36 18 27303246 27303246 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001944 exon12 c.G1833A p.P611P . . . DSG2 1829 broad.mit.edu 36 18 27376691 27376691 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001943 exon14 c.G2212A p.A738T . . . SMCHD1 23347 broad.mit.edu 36 18 2786462 2786462 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015295 exon47 c.C5936T p.T1979M . . . MEP1B 4225 broad.mit.edu 36 18 28047080 28047080 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005925 exon11 c.T1139C p.I380T . . . FAM59A 64762 broad.mit.edu 36 18 28121972 28121972 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022751 exon4 c.C586T p.P196S . . . DTNA 1837 broad.mit.edu 36 18 30692275 30692275 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198938 exon14 c.C1300T p.R434W . . . MYOM1 8736 broad.mit.edu 36 18 3092489 3092489 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019856 exon22 c.C3270T p.V1090V . . . FHOD3 80206 broad.mit.edu 36 18 32459486 32459486 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025135 exon10 c.C972T p.H324H . . . CELF4 56853 broad.mit.edu 36 18 33087778 33087778 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025089 exon11 c.G1341A p.P447P . . . CELF4 56853 broad.mit.edu 36 18 33108407 33108407 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025089 exon6 c.G636A p.S212S . . . PIK3C3 5289 broad.mit.edu 36 18 37838442 37838442 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002647 exon10 c.A1109G p.H370R . . . SETBP1 26040 broad.mit.edu 36 18 40786469 40786469 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015559 exon4 c.A3166C p.T1056P . . . KIAA1632 57724 broad.mit.edu 36 18 41756500 41756500 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020964 exon16 c.C2903T p.A968V . . . SMAD2 4087 broad.mit.edu 36 18 43628927 43628927 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135937 exon7 c.C824A p.P275Q . . . ZBTB7C 201501 broad.mit.edu 36 18 43820524 43820524 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039360 exon2 c.C953T p.P318L . . . LIPG 9388 broad.mit.edu 36 18 45361948 45361948 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006033 exon6 c.G959A p.G320D . . . ME2 4200 broad.mit.edu 36 18 46676267 46676267 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168335 exon2 c.C79T p.P27S . . . SMAD4 4089 broad.mit.edu 36 18 46845815 46845815 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005359 exon9 c.C980T p.A327V . . . WDR7 23335 broad.mit.edu 36 18 52514649 52514649 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015285 exon12 c.T1536C p.G512G . . . WDR7 23335 broad.mit.edu 36 18 52575438 52575438 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015285 exon15 c.T2616C p.S872S . . . MALT1 10892 broad.mit.edu 36 18 54541415 54541415 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173844 exon9 c.C1141T p.R381C . . . CCBE1 147372 broad.mit.edu 36 18 55273085 55273085 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133459 exon6 c.C632T p.T211I . . . CETN1 1068 broad.mit.edu 36 18 570689 570689 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004066 exon1 c.C281T p.T94M . . . CETN1 1068 broad.mit.edu 36 18 570797 570797 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004066 exon1 c.C389T p.A130V . . . KIAA1468 57614 broad.mit.edu 36 18 58039456 58039456 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020854 exon4 c.G713A p.R238Q . . . TNFRSF11A 8792 broad.mit.edu 36 18 58186950 58186950 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003839 exon9 c.G820A p.A274T . . . SERPINB2 5055 broad.mit.edu 36 18 59721303 59721303 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002575 exon8 c.G1032A p.S344S . . . CCDC102B 79839 broad.mit.edu 36 18 64655062 64655062 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001093729 exon4 c.G82A p.D28N . . . LAMA1 284217 broad.mit.edu 36 18 6968337 6968337 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005559 exon43 c.G6048A p.T2016T . . . ZNF407 55628 broad.mit.edu 36 18 70472772 70472772 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146190 exon1 c.G809A p.R270H . . . ZNF407 55628 broad.mit.edu 36 18 70904459 70904459 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017757 exon8 c.G5794A p.E1932K . . . TSHZ1 10194 broad.mit.edu 36 18 71127889 71127889 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005786 exon2 c.G1404A p.A468A . . . ZNF236 7776 broad.mit.edu 36 18 72712670 72712670 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007345 exon5 c.C562T p.R188W . . . ADNP2 22850 broad.mit.edu 36 18 75997545 75997545 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014913 exon4 c.T3258C p.D1086D . . . PARD6G 84552 broad.mit.edu 36 18 76018680 76018680 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032510 exon3 c.G1096A p.G366S . . . KIAA0802 23255 broad.mit.edu 36 18 8774116 8774116 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015210 exon6 c.G1006T p.E336X . . . ANKRD12 23253 broad.mit.edu 36 18 9247447 9247447 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015208 exon9 c.A4182G p.P1394P . . . ANKRD12 23253 broad.mit.edu 36 18 9248814 9248814 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015208 exon9 c.G5549A p.R1850H . . . RALBP1 10928 broad.mit.edu 36 18 9512367 9512367 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006788 exon4 c.C913T p.R305C . . . RNMT 8731 broad.mit.edu 36 18 13736253 13736253 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003799 exon9 c.1174delA p.K392fs . . . C19orf66 55337 broad.mit.edu 36 19 10062988 10062988 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018381 exon6 c.C447T p.G149G . . . DNMT1 1786 broad.mit.edu 36 19 10120658 10120658 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130823 exon27 c.C2622T p.D874D . . . ZGLP1 100125288 broad.mit.edu 36 19 10279872 10279872 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103167 exon1 c.C486T p.I162I . . . ILF3 3609 broad.mit.edu 36 19 10654313 10654313 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012218 exon13 c.C1481T p.A494V . . . DNM2 1785 broad.mit.edu 36 19 10800823 10800823 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190716 exon19 c.C2170T p.R724C . . . CARM1 10498 broad.mit.edu 36 19 10892515 10892515 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199141 exon13 c.C1430T p.T477M . . . LDLR 3949 broad.mit.edu 36 19 11102988 11102988 + Missense_Mutation SNP C T T rs13306505 byHapMap TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195802 exon17 c.C2216T p.A739V . . . SPC24 147841 broad.mit.edu 36 19 11119793 11119793 + Silent SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182513 exon3 c.T306G p.L102L . . . DOCK6 57572 broad.mit.edu 36 19 11199101 11199101 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020812 exon24 c.G2867A p.R956H . . . DOCK6 57572 broad.mit.edu 36 19 11207306 11207306 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020812 exon21 c.G2522A p.R841H . . . DOCK6 57572 broad.mit.edu 36 19 11209159 11209159 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020812 exon18 c.G2046A p.P682P . . . DOCK6 57572 broad.mit.edu 36 19 11214972 11214972 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020812 exon12 c.C1348T p.R450C . . . RGL3 57139 broad.mit.edu 36 19 11374173 11374173 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161616 exon11 c.G1287A p.T429T . . . RGL3 57139 broad.mit.edu 36 19 11387752 11387752 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161616 exon5 c.G498A p.S166S . . . ZNF653 115950 broad.mit.edu 36 19 11467931 11467931 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138783 exon3 c.G393T p.E131D . . . STK11 6794 broad.mit.edu 36 19 1172293 1172293 + Silent SNP C T T rs9282859 byCluster;byFrequency;by1000genomes TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000455 exon6 c.C816T p.Y272Y STK11,lung,NS,Substitution - coding silent,0 . . ZNF491 126069 broad.mit.edu 36 19 11778410 11778410 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152356 exon3 c.G642A p.P214P . . . ZNF491 126069 broad.mit.edu 36 19 11778899 11778899 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152356 exon3 c.C1131T p.H377H . . . ZNF136 7695 broad.mit.edu 36 19 12159027 12159027 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003437 exon4 c.A834C p.K278N . . . ZNF44 51710 broad.mit.edu 36 19 12245425 12245425 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016264 exon4 c.T645C p.H215H . . . ZNF564 163050 broad.mit.edu 36 19 12498456 12498456 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144976 exon4 c.C1466A p.A489D . . . MAN2B1 4125 broad.mit.edu 36 19 12618524 12618524 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000528 exon24 c.G2946A p.P982P . . . BEST2 54831 broad.mit.edu 36 19 12729621 12729621 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017682 exon9 c.G1260A p.K420K . . . MAST1 22983 broad.mit.edu 36 19 12819129 12819129 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014975 exon5 c.T353C p.L118P . . . CALR 811 broad.mit.edu 36 19 12915434 12915434 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004343 exon8 c.C1044T p.G348G . . . CACNA1A 773 broad.mit.edu 36 19 13275691 13275691 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174080 exon16 c.C1997T p.T666M . . . CCDC130 81576 broad.mit.edu 36 19 13726103 13726103 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030818 exon3 c.G4T p.G2C . . . CCDC130 81576 broad.mit.edu 36 19 13730815 13730815 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030818 exon7 c.C391T p.L131L . . . IL27RA 9466 broad.mit.edu 36 19 14011596 14011596 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004843 exon4 c.C408T p.D136D . . . PRKACA 5566 broad.mit.edu 36 19 14078584 14078584 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002730 exon3 c.C225T p.L75L . . . OR7C1 26664 broad.mit.edu 36 19 14771191 14771191 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198944 exon1 c.G758A p.G253D . . . OR1I1 126370 broad.mit.edu 36 19 15059754 15059754 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004713 exon1 c.G878A p.R293Q . . . ILVBL 10994 broad.mit.edu 36 19 15095252 15095252 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006844 exon3 c.C271T p.R91C . . . BRD4 23476 broad.mit.edu 36 19 15228050 15228050 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014299 exon9 c.G1576A p.A526T . . . WIZ 58525 broad.mit.edu 36 19 15399036 15399036 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021241 exon4 c.G838A p.A280T . . . CYP4F8 11283 broad.mit.edu 36 19 15587466 15587466 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007253 exon2 c.G39A p.P13P . . . CYP4F2 8529 broad.mit.edu 36 19 15861345 15861345 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001082 exon7 c.C806T p.A269V . . . CYP4F2 8529 broad.mit.edu 36 19 15864140 15864140 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001082 exon5 c.T504C p.N168N . . . TPM4 7171 broad.mit.edu 36 19 16053805 16053805 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145160 exon3 c.C323T p.T108M . . . C19orf44 84167 broad.mit.edu 36 19 16481612 16481612 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032207 exon5 c.C1452T p.T484T . . . NWD1 284434 broad.mit.edu 36 19 16771774 16771774 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007525 exon17 c.C3537T p.R1179R . . . CPAMD8 27151 broad.mit.edu 36 19 16919003 16919003 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015692 exon21 c.A2684G p.Q895R . . . HAUS8 93323 broad.mit.edu 36 19 17027714 17027714 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011699 exon9 c.C741T p.P247P . . . ANO8 57719 broad.mit.edu 36 19 17304979 17304979 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020959 exon4 c.C420T p.R140R . . . GTPBP3 84705 broad.mit.edu 36 19 17310774 17310774 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032620 exon5 c.C603T p.H201H . . . ATP8B3 148229 broad.mit.edu 36 19 1734185 1734185 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178002 exon29 c.C3634T p.R1212C . . . KCNN1 3780 broad.mit.edu 36 19 17945837 17945837 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002248 exon3 c.C140T p.A47V . . . KCNN1 3780 broad.mit.edu 36 19 17953781 17953781 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002248 exon5 c.C762T p.D254D . . . MAST3 23031 broad.mit.edu 36 19 18096490 18096490 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015016 exon10 c.G897A p.A299A . . . IFI30 10437 broad.mit.edu 36 19 18149047 18149047 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006332 exon5 c.G581A p.R194Q . . . RAB3A 5864 broad.mit.edu 36 19 18174354 18174354 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002866 exon2 c.G197A p.R66H . . . PDE4C 5143 broad.mit.edu 36 19 18185189 18185189 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000923 exon14 c.G1597A p.D533N . . . LSM4 25804 broad.mit.edu 36 19 18281644 18281644 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012321 exon4 c.G172A p.E58K . . . SUGP2 10147 broad.mit.edu 36 19 18976278 18976278 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014884 exon7 c.C2628T p.D876D . . . ZNF253 56242 broad.mit.edu 36 19 19863578 19863578 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021047 exon4 c.T522C p.C174C . . . AP3D1 8943 broad.mit.edu 36 19 2061171 2061171 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003938 exon26 c.G3042A p.A1014A . . . ZNF429 353088 broad.mit.edu 36 19 21511544 21511544 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001001415 exon4 c.G849A p.K283K . . . ZNF208 7757 broad.mit.edu 36 19 21947279 21947279 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007153 exon4 c.T2397C p.H799H . . . ZNF57 126295 broad.mit.edu 36 19 2867212 2867212 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173480 exon3 c.A267G p.E89E . . . CELF5 60680 broad.mit.edu 36 19 3232334 3232334 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172673 exon6 c.C741T p.Y247Y . . . C19orf29 58509 broad.mit.edu 36 19 3574820 3574820 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021231 exon2 c.C508T p.R170W . . . TSHZ3 57616 broad.mit.edu 36 19 36461766 36461766 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020856 exon2 c.G773A p.R258H . . . APBA3 9546 broad.mit.edu 36 19 3702531 3702531 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004886 exon9 c.G1416A p.S472S . . . RAX2 84839 broad.mit.edu 36 19 3722658 3722658 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032753 exon2 c.G83A p.R28Q . . . LSM14A 26065 broad.mit.edu 36 19 39402168 39402168 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114093 exon7 c.C814T p.R272C . . . LSM14A 26065 broad.mit.edu 36 19 39404360 39404360 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114093 exon9 c.T1245C p.L415L . . . MLL4 9757 broad.mit.edu 36 19 40916372 40916372 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014727 exon29 c.C6994T p.R2332C MLL4,central_nervous_system,brain,Substitution - Missense,0 . . C19orf55 148137 broad.mit.edu 36 19 40942155 40942155 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039887 exon2 c.G52A p.A18T . . . NPHS1 4868 broad.mit.edu 36 19 41028472 41028472 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004646 exon13 c.A1696G p.T566A . . . KIRREL2 84063 broad.mit.edu 36 19 41041530 41041530 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199180 exon4 c.G446A p.R149H . . . CLIP3 25999 broad.mit.edu 36 19 41207352 41207352 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199570 exon6 c.C704T p.A235V . . . WDR62 284403 broad.mit.edu 36 19 41285504 41285504 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083961 exon27 c.C3246T p.D1082D . . . ZFP14 57677 broad.mit.edu 36 19 41523365 41523365 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020917 exon5 c.T1203G p.C401W . . . ZFP14 57677 broad.mit.edu 36 19 41524194 41524194 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020917 exon5 c.G374A p.C125Y . . . ANKRD24 170961 broad.mit.edu 36 19 4170681 4170681 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133475 exon19 c.G3097A p.E1033K . . . ZNF345 25850 broad.mit.edu 36 19 42060948 42060948 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003419 exon3 c.G1376T p.C459F . . . ZNF540 163255 broad.mit.edu 36 19 42794880 42794880 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152606 exon5 c.A859G p.T287A . . . MPND 84954 broad.mit.edu 36 19 4305087 4305087 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159846 exon5 c.C710T p.P237L . . . MPND 84954 broad.mit.edu 36 19 4310933 4310933 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159846 exon11 c.G1290A p.T430T . . . KCNK6 9424 broad.mit.edu 36 19 43509289 43509289 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004823 exon2 c.T539C p.V180A . . . GGN 199720 broad.mit.edu 36 19 43569091 43569091 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152657 exon3 c.C651T p.R217R . . . SPRED3 399473 broad.mit.edu 36 19 43574582 43574582 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042522 exon2 c.G334A p.A112T . . . RYR1 6261 broad.mit.edu 36 19 43676976 43676976 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042723 exon39 c.G6419A p.R2140Q . . . RYR1 6261 broad.mit.edu 36 19 43749424 43749424 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042723 exon91 c.C13456T p.P4486S . . . UBXN6 80700 broad.mit.edu 36 19 4403387 4403387 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025241 exon4 c.G415A p.A139T . . . RINL 126432 broad.mit.edu 36 19 44053287 44053287 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198445 exon8 c.G445A p.V149I . . . FBXO27 126433 broad.mit.edu 36 19 44207901 44207901 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178820 exon6 c.G842A p.R281H . . . SUPT5H 6829 broad.mit.edu 36 19 44655749 44655749 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003169 exon23 c.G2325A p.T775T . . . FCGBP 8857 broad.mit.edu 36 19 45074517 45074517 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003890 exon22 c.G10209A p.A3403A . . . FCGBP 8857 broad.mit.edu 36 19 45113133 45113133 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003890 exon5 c.C2628T p.D876D . . . PLD3 23646 broad.mit.edu 36 19 45569434 45569434 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031696 exon9 c.C693T p.G231G . . . PLD3 23646 broad.mit.edu 36 19 45575903 45575903 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031696 exon13 c.G1456A p.A486T . . . HIPK4 147746 broad.mit.edu 36 19 45578899 45578899 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_144685 exon3 c.G839A p.R280H . . . PRX 57716 broad.mit.edu 36 19 45592783 45592783 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181882 exon7 c.G3316A p.A1106T . . . BLVRB 645 broad.mit.edu 36 19 45645675 45645675 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000713 exon5 c.C582T p.Y194Y . . . RAB4B 53916 broad.mit.edu 36 19 45984681 45984681 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016154 exon7 c.C615T p.A205A . . . CYP2A7 1549 broad.mit.edu 36 19 46074937 46074937 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000764 exon7 c.A1159G p.K387E . . . CYP2A7 1549 broad.mit.edu 36 19 46075719 46075719 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000764 exon6 c.C851T p.T284M . . . BCKDHA 593 broad.mit.edu 36 19 46619998 46619998 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164783 exon6 c.G736A p.A246T . . . LYPD4 147719 broad.mit.edu 36 19 47033946 47033946 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173506 exon4 c.C441T p.G147G . . . CD79A 973 broad.mit.edu 36 19 47076592 47076592 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001783 exon4 c.G514A p.E172K . . . ERF 2077 broad.mit.edu 36 19 47445660 47445660 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006494 exon4 c.G444A p.T148T . . . LIPE 3991 broad.mit.edu 36 19 47598882 47598882 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005357 exon9 c.C2684T p.S895L . . . PSG4 5672 broad.mit.edu 36 19 48400218 48400218 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002780 exon2 c.G90A p.P30P . . . PSG9 5678 broad.mit.edu 36 19 48463893 48463893 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002784 exon2 c.G313A p.A105T . . . ZNF575 284346 broad.mit.edu 36 19 48730448 48730448 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174945 exon3 c.G34A p.A12T . . . IRGQ 126298 broad.mit.edu 36 19 48789122 48789122 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007561 exon3 c.G768A p.S256S . . . ZNF404 342908 broad.mit.edu 36 19 49069054 49069054 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033719 exon2 c.A1143G p.E381E . . . ZNF285 26974 broad.mit.edu 36 19 49583583 49583583 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152354 exon4 c.C664T p.R222C . . . ZNF180 7733 broad.mit.edu 36 19 49673495 49673495 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013256 exon5 c.C1043A p.S348Y . . . KDM4B 23030 broad.mit.edu 36 19 5028406 5028406 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015015 exon8 c.C705T p.C235C . . . TRAPPC6A 79090 broad.mit.edu 36 19 50359078 50359078 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024108 exon5 c.C426T p.R142R . . . CKM 1158 broad.mit.edu 36 19 50506961 50506961 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001824 exon5 c.C539T p.T180M . . . KLC3 147700 broad.mit.edu 36 19 50544658 50544658 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177417 exon8 c.C1101T p.G367G . . . PPP1R13L 10848 broad.mit.edu 36 19 50591520 50591520 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142502 exon5 c.C727T p.R243C . . . EML2 24139 broad.mit.edu 36 19 50816662 50816662 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193269 exon13 c.C1356T p.D452D . . . FBXO46 23403 broad.mit.edu 36 19 50908288 50908288 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080469 exon2 c.C306A p.A102A . . . DMWD 1762 broad.mit.edu 36 19 50981583 50981583 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004943 exon3 c.C1011T p.D337D . . . RSPH6A 81492 broad.mit.edu 36 19 51000011 51000011 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030785 exon3 c.A992C p.K331T . . . PPP5C 5536 broad.mit.edu 36 19 51585201 51585201 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006247 exon12 c.G1409A p.R470Q . . . PNMAL1 55228 broad.mit.edu 36 19 51665059 51665059 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018215 exon2 c.C1074T p.P358P . . . PRKD2 25865 broad.mit.edu 36 19 51899460 51899460 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079881 exon6 c.G695A p.R232H . . . PTPRS 5802 broad.mit.edu 36 19 5196842 5196842 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002850 exon10 c.C933T p.C311C . . . GRLF1 2909 broad.mit.edu 36 19 52115782 52115782 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004491 exon1 c.G2010A p.S670S . . . ZC3H4 23211 broad.mit.edu 36 19 52262529 52262529 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015168 exon15 c.G2836A p.G946R . . . ZC3H4 23211 broad.mit.edu 36 19 52264367 52264367 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015168 exon14 c.C2220T p.P740P . . . NAPA 8775 broad.mit.edu 36 19 52698544 52698544 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003827 exon2 c.C126T p.C42C . . . EHD2 30846 broad.mit.edu 36 19 52921243 52921243 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014601 exon4 c.G865A p.A289T . . . GLTSCR2 29997 broad.mit.edu 36 19 52940710 52940710 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015710 exon1 c.A82G p.T28A . . . LIG1 3978 broad.mit.edu 36 19 53316334 53316334 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000234 exon24 c.G2290A p.A764T . . . ZNF114 163071 broad.mit.edu 36 19 53481256 53481256 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153608 exon5 c.C563T p.P188L . . . GRIN2D 2906 broad.mit.edu 36 19 53614344 53614344 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000836 exon8 c.T1777C p.C593R . . . BCAT2 587 broad.mit.edu 36 19 53994848 53994848 + Silent SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164773 exon4 c.G315T p.V105V . . . HSD17B14 51171 broad.mit.edu 36 19 54008385 54008385 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016246 exon9 c.C672T p.V224V . . . HSD17B14 51171 broad.mit.edu 36 19 54031473 54031473 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016246 exon1 c.C8T p.T3M . . . ZNRF4 148066 broad.mit.edu 36 19 5406699 5406699 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181710 exon1 c.C197T p.A66V . . . GYS1 2997 broad.mit.edu 36 19 54164402 54164402 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002103 exon16 c.C2169T p.S723S . . . RUVBL2 10856 broad.mit.edu 36 19 54209557 54209557 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006666 exon12 c.C1006T p.R336W . . . HRC 3270 broad.mit.edu 36 19 54348646 54348646 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002152 exon1 c.A1661G p.E554G . . . HRC 3270 broad.mit.edu 36 19 54349371 54349371 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002152 exon1 c.T936C p.T312T . . . SCAF1 58506 broad.mit.edu 36 19 54846310 54846310 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021228 exon7 c.G852C p.E284D . . . ATF5 22809 broad.mit.edu 36 19 55128056 55128056 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012068 exon4 c.C744T p.R248R . . . ZNF473 25888 broad.mit.edu 36 19 55240904 55240904 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006656 exon5 c.C1392T p.C464C . . . MYH14 79784 broad.mit.edu 36 19 55445716 55445716 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077186 exon15 c.C1789T p.R597W . . . SAFB2 9667 broad.mit.edu 36 19 5561040 5561040 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014649 exon9 c.C1262T p.T421M . . . MYBPC2 4606 broad.mit.edu 36 19 55659519 55659519 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004533 exon27 c.G3333A p.S1111S . . . SHANK1 50944 broad.mit.edu 36 19 55897691 55897691 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016148 exon11 c.C1592T p.T531M . . . KLK15 55554 broad.mit.edu 36 19 56022133 56022133 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017509 exon3 c.C294T p.Y98Y . . . KLK14 43847 broad.mit.edu 36 19 56273156 56273156 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022046 exon7 c.G724A p.A242T . . . ZNF175 7728 broad.mit.edu 36 19 56781943 56781943 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007147 exon5 c.C547T p.R183C . . . HAS1 3036 broad.mit.edu 36 19 56914277 56914277 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001523 exon2 c.C696T p.Y232Y . . . FPR2 2358 broad.mit.edu 36 19 56964466 56964466 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001462 exon2 c.C743T p.A248V . . . ZNF614 80110 broad.mit.edu 36 19 57211643 57211643 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025040 exon5 c.G1020A p.E340E . . . ZNF432 9668 broad.mit.edu 36 19 57229250 57229250 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014650 exon5 c.C1494T p.S498S . . . TMEM146 257062 broad.mit.edu 36 19 5723936 5723936 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152784 exon20 c.T1901C p.M634T . . . ZNF616 90317 broad.mit.edu 36 19 57310058 57310058 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178523 exon4 c.A2171G p.K724R . . . ZNF616 90317 broad.mit.edu 36 19 57310165 57310165 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178523 exon4 c.A2064G p.P688P . . . NRTN 4902 broad.mit.edu 36 19 5775275 5775275 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004558 exon1 c.C99T p.L33L . . . ZNF83 55769 broad.mit.edu 36 19 57808294 57808294 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105552 exon4 c.C1336A p.H446N . . . ZNF83 55769 broad.mit.edu 36 19 57809273 57809273 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105552 exon4 c.G357A p.T119T . . . ZNF611 81856 broad.mit.edu 36 19 57900226 57900226 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161501 exon5 c.C1687T p.R563C . . . FUT3 2525 broad.mit.edu 36 19 5795492 5795492 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001097640 exon3 c.G359A p.R120H . . . ZNF665 79788 broad.mit.edu 36 19 58360661 58360661 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024733 exon4 c.C894T p.C298C . . . ZNF677 342926 broad.mit.edu 36 19 58432225 58432225 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182609 exon5 c.G1567T p.A523S . . . ZNF331 55422 broad.mit.edu 36 19 58772688 58772688 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001079906 exon6 c.G1062A p.P354P . . . LENG8 114823 broad.mit.edu 36 19 59658471 59658471 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052925 exon8 c.C938T p.T313M . . . RDH13 112724 broad.mit.edu 36 19 60251665 60251665 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138412 exon6 c.C289T p.R97W . . . PPP1R12C 54776 broad.mit.edu 36 19 60297870 60297870 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017607 exon12 c.G1563A p.A521A . . . PTPRH 5794 broad.mit.edu 36 19 60401871 60401871 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002842 exon8 c.G1642A p.E548K . . . PPP6R1 22870 broad.mit.edu 36 19 60435346 60435346 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014931 exon18 c.G2034C p.E678D . . . ZNF628 89887 broad.mit.edu 36 19 60684636 60684636 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033113 exon3 c.C252T p.G84G . . . NLRP11 204801 broad.mit.edu 36 19 60995613 60995613 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145007 exon9 c.C2379T p.S793S . . . NLRP4 147945 broad.mit.edu 36 19 61060981 61060981 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_134444 exon3 c.G410A p.R137H . . . NLRP8 126205 broad.mit.edu 36 19 61157955 61157955 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176811 exon3 c.C719T p.A240V . . . ZNF543 125919 broad.mit.edu 36 19 62532058 62532058 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213598 exon4 c.C1416T p.I472I . . . ZNF530 348327 broad.mit.edu 36 19 62807557 62807557 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020880 exon2 c.T131C p.L44P . . . ZNF587 84914 broad.mit.edu 36 19 63062986 63062986 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032828 exon3 c.C1394T p.A465V . . . ZNF329 79673 broad.mit.edu 36 19 63332004 63332004 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024620 exon4 c.G679A p.G227R . . . ZNF132 7691 broad.mit.edu 36 19 63637442 63637442 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003433 exon3 c.A1181G p.Q394R . . . TUBB4 10382 broad.mit.edu 36 19 6446341 6446341 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006087 exon4 c.G1169A p.R390Q . . . CD70 970 broad.mit.edu 36 19 6537039 6537039 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001252 exon3 c.C574T p.R192C . . . EMR1 2015 broad.mit.edu 36 19 6852986 6852986 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001974 exon6 c.C615T p.S205S . . . PALM 5064 broad.mit.edu 36 19 691362 691362 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002579 exon8 c.G513A p.S171S . . . MCOLN1 57192 broad.mit.edu 36 19 7499735 7499735 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020533 exon9 c.G1013A p.R338Q . . . XAB2 56949 broad.mit.edu 36 19 7598707 7598707 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020196 exon3 c.G231A p.A77A . . . HNRNPM 4670 broad.mit.edu 36 19 8457151 8457151 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005968 exon14 c.C1839T p.G613G . . . PRAM1 84106 broad.mit.edu 36 19 8469835 8469835 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032152 exon2 c.C857T p.P286L . . . MYO1F 4542 broad.mit.edu 36 19 8515319 8515319 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012335 exon14 c.C1386T p.D462D . . . ACTL9 284382 broad.mit.edu 36 19 8669060 8669060 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178525 exon1 c.G992A p.R331H . . . MUC16 94025 broad.mit.edu 36 19 8889346 8889346 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon11 c.G36446A p.R12149H . . . OR1M1 125963 broad.mit.edu 36 19 9065355 9065355 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004456 exon1 c.C435T p.V145V . . . ARID3A 1820 broad.mit.edu 36 19 922970 922970 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005224 exon9 c.G1687A p.G563S . . . ZNF266 10781 broad.mit.edu 36 19 9385083 9385083 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006631 exon11 c.G1518A p.S506S . . . ZNF266 10781 broad.mit.edu 36 19 9385437 9385437 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006631 exon11 c.C1164A p.A388A . . . OLFM2 93145 broad.mit.edu 36 19 9826027 9826027 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058164 exon6 c.G1200A p.T400T . . . ZNF486 90649 broad.mit.edu 36 19 20169120 20169120 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052852 exon4 c.601delA p.K201fs . . . ZNF536 9745 broad.mit.edu 36 19 35626487 35626487 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014717 exon2 c.178delC p.P60fs . . . BRSK1 84446 broad.mit.edu 36 19 60506848 60506848 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032430 exon12 c.1128delC p.D376fs . . . KANK3 256949 broad.mit.edu 36 19 8304950 8304961 + In_Frame_Del DEL TCGCTGTCGCCA - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 TCGCTGTCGCCA TCGCTGTCGCCA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198471 exon5 c.1467_1478del p.489_493del . . . C19orf34 255193 broad.mit.edu 36 19 1904991 1904991 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . PCP2 126006 broad.mit.edu 36 19 7604422 7604422 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . SPOCD1 90853 broad.mit.edu 36 1 32029171 32029172 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_144569 exon16 c.3271_3272insC p.R1091fs . . . CDC14A 8556 broad.mit.edu 36 1 100736334 100736334 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033312 exon14 c.G1404A p.S468S . . . GPR88 54112 broad.mit.edu 36 1 100777448 100777448 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022049 exon2 c.G338A p.R113H . . . CASZ1 54897 broad.mit.edu 36 1 10643053 10643053 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079843 exon6 c.G633A p.A211A . . . AMIGO1 57463 broad.mit.edu 36 1 109851743 109851743 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020703 exon2 c.C1315T p.R439W . . . GSTM3 2947 broad.mit.edu 36 1 110081299 110081299 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000849 exon9 c.G595A p.A199T . . . AHCYL1 10768 broad.mit.edu 36 1 110358968 110358968 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006621 exon6 c.G641A p.R214H . . . HBXIP 10542 broad.mit.edu 36 1 110748178 110748178 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006402 exon3 c.G347A p.R116H . . . OVGP1 5016 broad.mit.edu 36 1 111770626 111770626 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002557 exon3 c.G216T p.Q72H . . . ATP5F1 515 broad.mit.edu 36 1 111803710 111803710 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001688 exon6 c.C622T p.R208C . . . C1orf162 128346 broad.mit.edu 36 1 111821888 111821888 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174896 exon5 c.G295T p.A99S . . . ADORA3 140 broad.mit.edu 36 1 111847169 111847169 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020683 exon1 c.C331T p.R111W . . . PPM1J 333926 broad.mit.edu 36 1 113057111 113057111 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005167 exon3 c.C507A p.A169A . . . PTPN22 26191 broad.mit.edu 36 1 114199083 114199083 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012411 exon8 c.G652T p.D218Y . . . SYT6 148281 broad.mit.edu 36 1 114447861 114447861 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_205848 exon4 c.C822T p.S274S . . . TRIM33 51592 broad.mit.edu 36 1 114749637 114749637 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015906 exon15 c.G2686A p.G896R . . . NRAS 4893 broad.mit.edu 36 1 115052759 115052759 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002524 exon5 c.C490T p.R164C . . . ATP1A1 476 broad.mit.edu 36 1 116745325 116745325 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000701 exon20 c.C2769T p.F923F . . . C1orf187 374946 broad.mit.edu 36 1 11695034 11695034 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198545 exon5 c.G808A p.E270K . . . TRIM45 80263 broad.mit.edu 36 1 117457593 117457593 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145635 exon5 c.G1451A p.R484H . . . VTCN1 79679 broad.mit.edu 36 1 117500818 117500818 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024626 exon3 c.C346T p.R116W . . . MAN1A2 10905 broad.mit.edu 36 1 117843696 117843696 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006699 exon11 c.A1674G p.A558A . . . SPAG17 200162 broad.mit.edu 36 1 118425609 118425609 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206996 exon14 c.C1942T p.Q648X . . . WARS2 10352 broad.mit.edu 36 1 119420620 119420620 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201263 exon2 c.A224G p.D75G . . . HSD3B1 3283 broad.mit.edu 36 1 119858685 119858685 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000862 exon4 c.C1016T p.A339V . . . MIIP 60672 broad.mit.edu 36 1 12004856 12004856 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021933 exon3 c.G232A p.D78N . . . NOTCH2 4853 broad.mit.edu 36 1 120309675 120309675 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024408 exon10 c.C1605A p.D535E . . . VPS13D 55187 broad.mit.edu 36 1 12259151 12259151 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018156 exon19 c.G2919A p.R973R . . . DHRS3 9249 broad.mit.edu 36 1 12563146 12563146 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004753 exon2 c.C331T p.R111W . . . DVL1 1855 broad.mit.edu 36 1 1263880 1263880 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004421 exon12 c.G1149A p.P383P . . . PDE4DIP 9659 broad.mit.edu 36 1 143592957 143592957 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198832 exon28 c.G3464A p.R1155H . . . PDE4DIP 9659 broad.mit.edu 36 1 143706078 143706078 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014644 exon1 c.G11A p.G4E . . . PIAS3 10401 broad.mit.edu 36 1 144289821 144289821 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006099 exon2 c.C427T p.R143W . . . SSU72 29101 broad.mit.edu 36 1 1467340 1467340 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014188 exon5 c.G554A p.R185H . . . SV2A 9900 broad.mit.edu 36 1 148144204 148144204 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014849 exon12 c.G1897A p.V633M . . . PRPF3 9129 broad.mit.edu 36 1 148564168 148564168 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004698 exon2 c.C144T p.A48A . . . RPRD2 23248 broad.mit.edu 36 1 148711271 148711271 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015203 exon11 c.C3223A p.P1075T . . . LYSMD1 388695 broad.mit.edu 36 1 149400029 149400029 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136543 exon3 c.C493T p.R165W . . . VPS72 6944 broad.mit.edu 36 1 149415995 149415995 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005997 exon6 c.C844T p.R282W . . . ZNF687 57592 broad.mit.edu 36 1 149526412 149526412 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020832 exon2 c.A1021G p.N341D . . . CELF3 11189 broad.mit.edu 36 1 149944191 149944191 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007185 exon12 c.C1348T p.R450C . . . TDRKH 11022 broad.mit.edu 36 1 150017890 150017890 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083965 exon6 c.G778A p.D260N . . . LINGO4 339398 broad.mit.edu 36 1 150041594 150041594 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004432 exon2 c.C211T p.R71C . . . FLG 2312 broad.mit.edu 36 1 150551854 150551854 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002016 exon3 c.G2132A p.R711H . . . FLG 2312 broad.mit.edu 36 1 150552889 150552889 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002016 exon3 c.G1097A p.R366H . . . LCE2D 353141 broad.mit.edu 36 1 150903441 150903441 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178430 exon2 c.G236A p.R79H . . . SPRR2A 6700 broad.mit.edu 36 1 151295733 151295733 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005988 exon2 c.C103T p.P35S . . . S100A16 140576 broad.mit.edu 36 1 151846693 151846693 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080388 exon3 c.G253A p.G85S . . . DENND4B 9909 broad.mit.edu 36 1 152175731 152175731 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014856 exon16 c.C2350T p.R784W . . . UBAP2L 9898 broad.mit.edu 36 1 152494794 152494794 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014847 exon18 c.C2096T p.T699M . . . IL6R 3570 broad.mit.edu 36 1 152675102 152675102 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181359 exon6 c.G841A p.D281N . . . KAZ 23254 broad.mit.edu 36 1 15303182 15303182 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201628 exon13 c.C1958T p.A653V . . . PMVK 10654 broad.mit.edu 36 1 153168143 153168143 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006556 exon3 c.G293A p.G98D . . . THBS3 7059 broad.mit.edu 36 1 153433592 153433592 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007112 exon21 c.C2536T p.R846X . . . GBA 2629 broad.mit.edu 36 1 153474623 153474623 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000157 exon6 c.G687A p.A229A . . . ASH1L 55870 broad.mit.edu 36 1 153716956 153716956 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018489 exon3 c.C2329T p.R777C . . . ASH1L 55870 broad.mit.edu 36 1 153717166 153717166 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018489 exon3 c.A2119G p.K707E . . . MEX3A 92312 broad.mit.edu 36 1 154313769 154313769 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001093725 exon2 c.C783T p.S261S . . . CCT3 7203 broad.mit.edu 36 1 154545685 154545685 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008800 exon12 c.G1453A p.V485I . . . RHBG 57127 broad.mit.edu 36 1 154618335 154618335 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020407 exon6 c.A955G p.T319A . . . MEF2D 4209 broad.mit.edu 36 1 154713465 154713465 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005920 exon7 c.T818C p.I273T . . . NTRK1 4914 broad.mit.edu 36 1 155116416 155116416 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T T T T Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001012331 exon15 c.T2030G p.V677G . . . FCRL4 83417 broad.mit.edu 36 1 155822788 155822788 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031282 exon6 c.G929A p.C310Y . . . MMP23B 8510 broad.mit.edu 36 1 1559809 1559809 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006983 exon8 c.G1118A p.R373H . . . SPTA1 6708 broad.mit.edu 36 1 156881719 156881719 + Silent SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003126 exon29 c.G4077T p.G1359G . . . SPTA1 6708 broad.mit.edu 36 1 156905922 156905922 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003126 exon14 c.T1733C p.L578P . . . OR6K6 128371 broad.mit.edu 36 1 156991981 156991981 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005184 exon1 c.T752C p.V251A . . . VSIG8 391123 broad.mit.edu 36 1 158094347 158094347 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013661 exon4 c.G464A p.G155D . . . TAGLN2 8407 broad.mit.edu 36 1 158155270 158155270 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003564 exon5 c.C544T p.R182C . . . NCSTN 23385 broad.mit.edu 36 1 158588592 158588592 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015331 exon8 c.G968A p.R323H . . . NHLH1 4807 broad.mit.edu 36 1 158607456 158607456 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005598 exon2 c.C311T p.T104M . . . SLAMF1 6504 broad.mit.edu 36 1 158873938 158873938 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003037 exon2 c.C82T p.R28C . . . CD244 51744 broad.mit.edu 36 1 159077801 159077801 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166663 exon3 c.G493A p.V165M . . . PLEKHM2 23207 broad.mit.edu 36 1 15918982 15918982 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015164 exon6 c.C632T p.A211V . . . FCRLB 127943 broad.mit.edu 36 1 159964007 159964007 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002901 exon6 c.G1212A p.T404T . . . FAM131C 348487 broad.mit.edu 36 1 16261241 16261241 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182623 exon4 c.G208A p.D70N . . . FBXO42 54455 broad.mit.edu 36 1 16450563 16450563 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018994 exon10 c.C1343T p.T448M . . . DUSP27 92235 broad.mit.edu 36 1 165362100 165362100 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080426 exon5 c.G1108A p.G370S . . . DUSP27 92235 broad.mit.edu 36 1 165362693 165362693 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080426 exon5 c.C1701T p.S567S . . . C1orf112 55732 broad.mit.edu 36 1 168088701 168088701 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018186 exon24 c.G2511A p.A837A . . . GORAB 92344 broad.mit.edu 36 1 168787984 168787984 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152281 exon5 c.C942T p.V314V . . . FMO3 2328 broad.mit.edu 36 1 169353154 169353154 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002294 exon9 c.A1547G p.K516R . . . MYOC 4653 broad.mit.edu 36 1 169871863 169871863 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000261 exon3 c.C1340T p.A447V . . . CROCC 9696 broad.mit.edu 36 1 17136753 17136753 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014675 exon10 c.T1224C p.R408R . . . TNR 7143 broad.mit.edu 36 1 173639073 173639073 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003285 exon4 c.G802A p.G268R . . . PAPPA2 60676 broad.mit.edu 36 1 174831274 174831274 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020318 exon3 c.C1911T p.N637N . . . TOR3A 64222 broad.mit.edu 36 1 177329913 177329913 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022371 exon5 c.G881A p.R294Q . . . CEP350 9857 broad.mit.edu 36 1 178323368 178323368 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014810 exon32 c.C6318T p.A2106A . . . CACNA1E 777 broad.mit.edu 36 1 179968254 179968254 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000721 exon20 c.G2409A p.P803P . . . CACNA1E 777 broad.mit.edu 36 1 180017250 180017250 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000721 exon39 c.G5332A p.G1778S . . . GLUL 2752 broad.mit.edu 36 1 180620390 180620390 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002065 exon8 c.C895T p.R299C . . . DHX9 1660 broad.mit.edu 36 1 181094557 181094557 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001357 exon10 c.C967T p.R323X . . . LAMC1 3915 broad.mit.edu 36 1 181353158 181353158 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002293 exon9 c.G1645A p.V549M . . . NCF2 4688 broad.mit.edu 36 1 181822681 181822681 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190794 exon2 c.C229T p.R77X . . . RGL1 23179 broad.mit.edu 36 1 182083431 182083431 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015149 exon4 c.A352G p.T118A . . . EDEM3 80267 broad.mit.edu 36 1 182944097 182944097 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025191 exon17 c.C1850T p.A617V . . . EDEM3 80267 broad.mit.edu 36 1 182973409 182973409 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025191 exon3 c.C264T p.G88G . . . HMCN1 83872 broad.mit.edu 36 1 184147485 184147485 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon6 c.G850A p.A284T . . . HMCN1 83872 broad.mit.edu 36 1 184251939 184251939 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon32 c.C5136T p.C1712C . . . HMCN1 83872 broad.mit.edu 36 1 184402601 184402601 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon100 c.G15478A p.A5160T . . . HMCN1 83872 broad.mit.edu 36 1 184425536 184425536 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon107 c.G16811A p.R5604H . . . TPR 7175 broad.mit.edu 36 1 184591166 184591166 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003292 exon17 c.C2170T p.R724C . . . C1orf27 54953 broad.mit.edu 36 1 184641858 184641858 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164246 exon11 c.G925A p.V309I . . . RGS21 431704 broad.mit.edu 36 1 190601688 190601688 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039152 exon5 c.C270T p.F90F . . . ALDH4A1 8659 broad.mit.edu 36 1 19073654 19073654 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170726 exon14 c.T1469C p.V490A . . . UBR4 23352 broad.mit.edu 36 1 19376625 19376625 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020765 exon19 c.C2554T p.P852S . . . PQLC2 54896 broad.mit.edu 36 1 19526372 19526372 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017765 exon8 c.C683T p.T228M . . . ASPM 259266 broad.mit.edu 36 1 195340695 195340695 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018136 exon18 c.C4309T p.R1437C . . . ZNF281 23528 broad.mit.edu 36 1 198642955 198642955 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012482 exon2 c.G2502A p.A834A . . . KIF14 9928 broad.mit.edu 36 1 198796517 198796517 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014875 exon26 c.C4186T p.L1396L . . . KIF21B 23046 broad.mit.edu 36 1 199222796 199222796 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017596 exon25 c.C3565T p.R1189W . . . KIF21B 23046 broad.mit.edu 36 1 199225909 199225909 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017596 exon20 c.G3010A p.V1004M . . . CACNA1S 779 broad.mit.edu 36 1 199276104 199276104 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000069 exon43 c.A5248G p.M1750V . . . CACNA1S 779 broad.mit.edu 36 1 199313793 199313793 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000069 exon11 c.C1456T p.L486L . . . CACNA1S 779 broad.mit.edu 36 1 199327792 199327792 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000069 exon4 c.G472A p.G158S . . . IGFN1 91156 broad.mit.edu 36 1 199462847 199462847 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164586 exon23 c.C11001T p.G3667G . . . TNNT2 7139 broad.mit.edu 36 1 199601048 199601048 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000364 exon10 c.G305T p.R102L . . . IPO9 55705 broad.mit.edu 36 1 200110109 200110109 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018085 exon21 c.C2819T p.A940V . . . GPR37L1 9283 broad.mit.edu 36 1 200363842 200363842 + Silent SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004767 exon2 c.C981A p.T327T . . . GPR37L1 9283 broad.mit.edu 36 1 200363990 200363990 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004767 exon2 c.G1129A p.V377I . . . KDM5B 10765 broad.mit.edu 36 1 200969283 200969283 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006618 exon23 c.G3778A p.V1260M . . . OTUD3 23252 broad.mit.edu 36 1 20106716 20106716 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015207 exon8 c.C1087T p.R363C . . . PRELP 5549 broad.mit.edu 36 1 201722551 201722551 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002725 exon3 c.G1068A p.R356R . . . SNRPE 6635 broad.mit.edu 36 1 202099456 202099456 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003094 exon3 c.C124T p.R42W . . . PIK3C2B 5287 broad.mit.edu 36 1 202699787 202699787 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002646 exon6 c.G1286A p.C429Y . . . LRRN2 10446 broad.mit.edu 36 1 202853804 202853804 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201630 exon2 c.C1940T p.A647V . . . NFASC 23114 broad.mit.edu 36 1 203204100 203204100 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160331 exon7 c.C840T p.I280I . . . TMCC2 9911 broad.mit.edu 36 1 203477323 203477323 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014858 exon2 c.G275A p.R92H . . . AVPR1B 553 broad.mit.edu 36 1 204391148 204391148 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000707 exon1 c.C85T p.R29W . . . CTSE 1510 broad.mit.edu 36 1 204491995 204491995 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001910 exon5 c.A597G p.P199P . . . SRGAP2 23380 broad.mit.edu 36 1 204693206 204693206 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170637 exon17 c.C1954T p.R652C . . . IKBKE 9641 broad.mit.edu 36 1 204716190 204716190 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193322 exon6 c.C402T p.R134R . . . LGTN 1939 broad.mit.edu 36 1 204849419 204849419 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006893 exon3 c.C264A p.S88S . . . YOD1 55432 broad.mit.edu 36 1 205290770 205290770 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018566 exon1 c.G229A p.A77T . . . CR2 1380 broad.mit.edu 36 1 205713609 205713609 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006658 exon11 c.C2075A p.P692H . . . PLXNA2 5362 broad.mit.edu 36 1 206267230 206267230 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025179 exon32 c.C5666T p.A1889V . . . PLXNA2 5362 broad.mit.edu 36 1 206283153 206283153 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025179 exon21 c.C3893T p.T1298M . . . SERTAD4 56256 broad.mit.edu 36 1 208481614 208481614 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019605 exon4 c.G380A p.R127Q . . . KIF17 57576 broad.mit.edu 36 1 20903915 20903915 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122819 exon5 c.G735A p.E245E . . . KCNH1 3756 broad.mit.edu 36 1 209159659 209159659 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002238 exon7 c.G1327A p.A443T . . . TRAF5 7188 broad.mit.edu 36 1 209605395 209605395 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004619 exon8 c.C751T p.R251C . . . PPP2R5A 5525 broad.mit.edu 36 1 210588407 210588407 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199756 exon7 c.T647C p.M216T . . . RPS6KC1 26750 broad.mit.edu 36 1 211369517 211369517 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012424 exon6 c.T497C p.V166A . . . PTPN14 5784 broad.mit.edu 36 1 212609633 212609633 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005401 exon17 c.C3061T p.R1021X . . . PTPN14 5784 broad.mit.edu 36 1 212612696 212612696 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005401 exon16 c.C3017T p.A1006V . . . USH2A 7399 broad.mit.edu 36 1 213874578 213874578 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon70 c.C15143T p.A5048V . . . USH2A 7399 broad.mit.edu 36 1 213968042 213968042 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon61 c.G12019A p.D4007N . . . TGFB2 7042 broad.mit.edu 36 1 216586890 216586890 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003238 exon1 c.G224T p.R75M . . . RAB3GAP2 25782 broad.mit.edu 36 1 218431238 218431238 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012414 exon14 c.G1282A p.A428T . . . HSPG2 3339 broad.mit.edu 36 1 22054609 22054609 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005529 exon46 c.G5848A p.V1950M . . . HSPG2 3339 broad.mit.edu 36 1 22079514 22079514 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005529 exon16 c.C2124T p.S708S . . . MIA3 375056 broad.mit.edu 36 1 220868385 220868385 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198551 exon4 c.G1200A p.T400T . . . DISP1 84976 broad.mit.edu 36 1 221242802 221242802 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032890 exon8 c.C1440T p.G480G . . . CELA3B 23436 broad.mit.edu 36 1 22185649 22185649 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007352 exon7 c.T681C p.D227D . . . PSEN2 5664 broad.mit.edu 36 1 225149791 225149791 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000447 exon13 c.C1235T p.A412V . . . CDC42BPA 8476 broad.mit.edu 36 1 225289814 225289814 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014826 exon23 c.C2969T p.A990V . . . ZNF678 339500 broad.mit.edu 36 1 225908778 225908778 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178549 exon4 c.A369G p.K123K . . . OBSCN 84033 broad.mit.edu 36 1 226542029 226542029 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052843 exon36 c.C9556T p.R3186W . . . OBSCN 84033 broad.mit.edu 36 1 226549301 226549301 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052843 exon43 c.G11593A p.A3865T . . . TRIM17 51127 broad.mit.edu 36 1 226665475 226665475 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016102 exon4 c.G551A p.R184H . . . ABCB10 23456 broad.mit.edu 36 1 227741937 227741937 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012089 exon6 c.G1228A p.V410M . . . COG2 22796 broad.mit.edu 36 1 228887583 228887583 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007357 exon12 c.G1358A p.R453Q . . . TRIM67 440730 broad.mit.edu 36 1 229409059 229409059 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004342 exon7 c.C1719T p.D573D . . . EPHB2 2048 broad.mit.edu 36 1 23064164 23064164 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017449 exon5 c.G1175A p.R392H . . . MORN1 79906 broad.mit.edu 36 1 2309580 2309580 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024848 exon3 c.G205A p.G69R . . . PCNXL2 80003 broad.mit.edu 36 1 231202873 231202873 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014801 exon30 c.A5129G p.D1710G . . . PCNXL2 80003 broad.mit.edu 36 1 231461004 231461004 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014801 exon5 c.C1227T p.D409D . . . KDM1A 23028 broad.mit.edu 36 1 23271265 23271265 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009999 exon14 c.C1610T p.A537V . . . LUZP1 7798 broad.mit.edu 36 1 23293023 23293023 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033631 exon4 c.A319G p.K107E . . . NID1 4811 broad.mit.edu 36 1 234220942 234220942 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002508 exon14 c.C2795T p.A932V . . . ACTN2 88 broad.mit.edu 36 1 234972947 234972947 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103 exon11 c.G1236A p.T412T . . . RYR2 6262 broad.mit.edu 36 1 235796566 235796566 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon28 c.G3291T p.K1097N . . . RYR2 6262 broad.mit.edu 36 1 236038894 236038894 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon100 c.G14369A p.R4790Q . . . ZP4 57829 broad.mit.edu 36 1 236120546 236120546 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021186 exon1 c.C13T p.R5W . . . CHRM3 1131 broad.mit.edu 36 1 238138155 238138155 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000740 exon5 c.C781T p.R261C . . . ZNF238 10472 broad.mit.edu 36 1 242284907 242284907 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006352 exon1 c.G1181A p.R394H . . . MYOM3 127294 broad.mit.edu 36 1 24279265 24279265 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152372 exon20 c.C2414T p.P805L . . . MYOM3 127294 broad.mit.edu 36 1 24281779 24281779 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152372 exon17 c.C1983T p.P661P . . . NLRP3 114548 broad.mit.edu 36 1 245665957 245665957 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004895 exon6 c.G2561T p.S854I . . . OR2G2 81470 broad.mit.edu 36 1 245818807 245818807 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001915 exon1 c.C523T p.R175C . . . OR6F1 343169 broad.mit.edu 36 1 245942473 245942473 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005286 exon1 c.G208T p.E70X . . . OR14A16 284532 broad.mit.edu 36 1 246045241 246045241 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001966 exon1 c.C414A p.T138T . . . OR2L13 284521 broad.mit.edu 36 1 246330102 246330102 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175911 exon3 c.G802A p.A268T . . . SH3BP5L 80851 broad.mit.edu 36 1 247072995 247072995 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030645 exon7 c.C909T p.D303D . . . ZNF692 55657 broad.mit.edu 36 1 247111282 247111282 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193328 exon11 c.G1175A p.R392H . . . RCAN3 11123 broad.mit.edu 36 1 24730424 24730424 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013441 exon3 c.G325A p.E109K . . . SRRM1 10250 broad.mit.edu 36 1 24868221 24868221 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005839 exon14 c.G1760A p.R587H . . . SRRM1 10250 broad.mit.edu 36 1 24868509 24868509 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005839 exon14 c.C2048T p.S683L . . . C1orf93 127281 broad.mit.edu 36 1 2510259 2510259 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195741 exon5 c.C478A p.P160T . . . SLC9A1 6548 broad.mit.edu 36 1 27300287 27300287 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003047 exon11 c.G2104A p.G702S . . . FCN3 8547 broad.mit.edu 36 1 27568544 27568544 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173452 exon7 c.A637G p.S213G . . . AHDC1 27245 broad.mit.edu 36 1 27748400 27748400 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029882 exon6 c.C2814T p.C938C . . . AHDC1 27245 broad.mit.edu 36 1 27748620 27748620 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029882 exon6 c.G2594A p.R865Q . . . SMPDL3B 27293 broad.mit.edu 36 1 28157628 28157628 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014474 exon8 c.C1060T p.R354C . . . RCC1 1104 broad.mit.edu 36 1 28734468 28734468 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001269 exon6 c.G650A p.R217Q . . . PTPRU 10076 broad.mit.edu 36 1 29503026 29503026 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005704 exon17 c.G2579A p.R860Q . . . SDC3 9672 broad.mit.edu 36 1 31122194 31122194 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014654 exon3 c.C662T p.T221M . . . BAI2 576 broad.mit.edu 36 1 31969088 31969088 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001703 exon29 c.C4280T p.P1427L . . . BAI2 576 broad.mit.edu 36 1 31978184 31978184 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001703 exon14 c.G2097A p.E699E . . . LCK 3932 broad.mit.edu 36 1 32514859 32514859 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042771 exon9 c.C849T p.D283D . . . SYNC 81493 broad.mit.edu 36 1 32933093 32933093 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161708 exon2 c.T1193C p.L398P . . . KIAA1522 57648 broad.mit.edu 36 1 33009356 33009356 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198972 exon6 c.C1812T p.H604H . . . TMEM54 113452 broad.mit.edu 36 1 33136314 33136314 + Silent SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033504 exon2 c.G210T p.V70V . . . PRDM16 63976 broad.mit.edu 36 1 3317869 3317869 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022114 exon9 c.C1248T p.H416H . . . CSMD2 114784 broad.mit.edu 36 1 34173977 34173977 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052896 exon4 c.C563T p.T188M . . . ZMYM6 9204 broad.mit.edu 36 1 35226223 35226223 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007167 exon16 c.G3047A p.R1016H . . . C1orf113 79729 broad.mit.edu 36 1 36558009 36558009 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024676 exon11 c.A825G p.P275P . . . STK40 83931 broad.mit.edu 36 1 36599513 36599513 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032017 exon3 c.G8A p.R3Q . . . OSCP1 127700 broad.mit.edu 36 1 36661616 36661616 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145047 exon5 c.C555T p.N185N . . . CSF3R 1441 broad.mit.edu 36 1 36713712 36713712 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172313 exon4 c.G214A p.G72R . . . GRIK3 2899 broad.mit.edu 36 1 37080053 37080053 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000831 exon10 c.C1401T p.I467I . . . ZC3H12A 80149 broad.mit.edu 36 1 37720724 37720724 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025079 exon5 c.C921T p.P307P . . . MACF1 23499 broad.mit.edu 36 1 39522431 39522431 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012090 exon11 c.C1037A p.P346H . . . MACF1 23499 broad.mit.edu 36 1 39591400 39591400 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012090 exon40 c.C5148T p.S1716S . . . MACF1 23499 broad.mit.edu 36 1 39626757 39626757 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012090 exon54 c.G9470A p.R3157H . . . MYCL1 4610 broad.mit.edu 36 1 40135854 40135854 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033081 exon2 c.G872A p.R291H . . . MFSD2A 84879 broad.mit.edu 36 1 40197071 40197071 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136493 exon3 c.C379T p.R127C . . . MFSD2A 84879 broad.mit.edu 36 1 40205096 40205096 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136493 exon8 c.C871T p.P291S . . . ZMPSTE24 10269 broad.mit.edu 36 1 40530735 40530735 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005857 exon10 c.G1235A p.R412H . . . RIMKLA 284716 broad.mit.edu 36 1 42648400 42648400 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173642 exon4 c.C640T p.L214F . . . TMEM125 128218 broad.mit.edu 36 1 43511552 43511552 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144626 exon4 c.G572A p.G191D . . . KIAA0467 23334 broad.mit.edu 36 1 43663879 43663879 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015284 exon5 c.G267A p.T89T . . . CCDC24 149473 broad.mit.edu 36 1 44234215 44234215 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152499 exon9 c.C720A p.S240S . . . BEST4 266675 broad.mit.edu 36 1 45024353 45024353 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153274 exon4 c.G616A p.A206T . . . ZSWIM5 57643 broad.mit.edu 36 1 45278774 45278774 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020883 exon7 c.C1633T p.R545X . . . MAST2 23139 broad.mit.edu 36 1 46273109 46273109 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015112 exon29 c.C4181T p.A1394V . . . CYP4A11 1579 broad.mit.edu 36 1 47171048 47171048 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000778 exon11 c.G1336A p.A446T . . . SPATA6 54558 broad.mit.edu 36 1 48597955 48597955 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019073 exon10 c.G984A p.S328S . . . AGBL4 84871 broad.mit.edu 36 1 48825380 48825380 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032785 exon11 c.C1150T p.R384C . . . BEND5 79656 broad.mit.edu 36 1 48997312 48997312 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024603 exon3 c.C592T p.R198C . . . TTC39A 22996 broad.mit.edu 36 1 51528307 51528307 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144832 exon16 c.G1463A p.R488H . . . EPS15 2060 broad.mit.edu 36 1 51644233 51644233 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159969 exon4 c.G667T p.A223S . . . CC2D1B 200014 broad.mit.edu 36 1 52598070 52598070 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032449 exon8 c.G837A p.P279P . . . CC2D1B 200014 broad.mit.edu 36 1 52599391 52599391 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032449 exon5 c.C320T p.T107M . . . ZYG11B 79699 broad.mit.edu 36 1 53051855 53051855 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024646 exon11 c.C1755G p.D585E . . . YIPF1 54432 broad.mit.edu 36 1 54109639 54109639 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018982 exon7 c.C475T p.R159X YIPF1,large_intestine,colon,Substitution - Missense,0 . . MRPL37 51253 broad.mit.edu 36 1 54454444 54454444 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016491 exon6 c.G1033A p.V345M . . . C1orf177 163747 broad.mit.edu 36 1 55055321 55055321 + Silent SNP A T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001110533 exon9 c.A1122T p.R374R . . . PCSK9 255738 broad.mit.edu 36 1 55296897 55296897 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174936 exon9 c.G1492A p.E498K . . . C1orf168 199920 broad.mit.edu 36 1 57030501 57030501 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004303 exon2 c.C573T p.A191A . . . CHD5 26038 broad.mit.edu 36 1 6107805 6107805 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015557 exon29 c.G4336A p.A1446T . . . RNF207 388591 broad.mit.edu 36 1 6195782 6195782 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207396 exon16 c.C1604T p.T535M . . . RNF207 388591 broad.mit.edu 36 1 6200984 6200984 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207396 exon17 c.C1701T p.H567H . . . ACOT7 11332 broad.mit.edu 36 1 6247297 6247297 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_181864 exon9 c.C1090T p.R364W . . . UBE2U 148581 broad.mit.edu 36 1 64445113 64445113 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152489 exon3 c.C227T p.P76L . . . CACHD1 57685 broad.mit.edu 36 1 64841164 64841164 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020925 exon4 c.A345G p.P115P . . . CACHD1 57685 broad.mit.edu 36 1 64902797 64902797 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_020925 exon15 c.C1970A p.T657N . . . LEPR 3953 broad.mit.edu 36 1 65847094 65847094 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003679 exon12 c.G1674A p.W558X . . . DNAJC11 55735 broad.mit.edu 36 1 6684403 6684403 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018198 exon1 c.T45C p.Y15Y . . . ZRANB2 9406 broad.mit.edu 36 1 71309135 71309135 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005455 exon7 c.C646T p.R216C . . . RABGGTB 5876 broad.mit.edu 36 1 76030572 76030572 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004582 exon7 c.C698T p.P233L . . . PIGK 10026 broad.mit.edu 36 1 77444991 77444991 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005482 exon3 c.G161A p.R54Q . . . ELTD1 64123 broad.mit.edu 36 1 79159903 79159903 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022159 exon9 c.T1240G p.S414A . . . CYR61 3491 broad.mit.edu 36 1 85821059 85821059 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001554 exon5 c.T892C p.F298L . . . CLCA4 22802 broad.mit.edu 36 1 86798225 86798225 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012128 exon2 c.C182T p.T61M . . . HS2ST1 9653 broad.mit.edu 36 1 87336176 87336176 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134492 exon5 c.C656T p.P219L . . . LMO4 8543 broad.mit.edu 36 1 87577878 87577878 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006769 exon3 c.C308T p.A103V . . . GBP7 388646 broad.mit.edu 36 1 89387682 89387682 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207398 exon7 c.C1033T p.P345S . . . SLC2A7 155184 broad.mit.edu 36 1 8987455 8987455 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207420 exon11 c.C1263T p.D421D . . . SLC2A7 155184 broad.mit.edu 36 1 9005682 9005682 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207420 exon3 c.G193A p.A65T . . . ABCA4 24 broad.mit.edu 36 1 94239020 94239020 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000350 exon47 c.G6439A p.A2147T . . . ABCA4 24 broad.mit.edu 36 1 94270024 94270024 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000350 exon27 c.G4026A p.P1342P . . . LPPR4 9890 broad.mit.edu 36 1 99539964 99539964 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014839 exon6 c.C889T p.R297W . . . PALMD 54873 broad.mit.edu 36 1 99900499 99900499 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017734 exon2 c.C82T p.R28C . . . FRRS1 391059 broad.mit.edu 36 1 99949013 99949013 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013660 exon15 c.G1561A p.V521I . . . FRRS1 391059 broad.mit.edu 36 1 99979050 99979050 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013660 exon6 c.G463A p.V155M . . . PROX1 5629 broad.mit.edu 36 1 212236622 212236622 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002763 exon2 c.121delT p.F41fs . . . AGT 183 broad.mit.edu 36 1 228905654 228905655 + Frame_Shift_Del DEL CT - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 CT CT CT - CT CT Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000029 exon5 c.1313_1314del p.438_438del . . . RPL22 6146 broad.mit.edu 36 1 6180372 6180372 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000983 exon2 c.44delA p.K15fs . . . EFCAB7 84455 broad.mit.edu 36 1 63795445 63795445 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032437 exon10 c.1287delT p.N429fs . . . C1orf212 113444 broad.mit.edu 36 1 35093542 35093542 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . TMEM53 79639 broad.mit.edu 36 1 44883639 44883639 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . SPTLC3 55304 broad.mit.edu 36 20 13001053 13001053 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018327 exon3 c.G453A p.T151T . . . TASP1 55617 broad.mit.edu 36 20 13363764 13363764 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017714 exon12 c.C1023T p.G341G . . . NSFL1C 55968 broad.mit.edu 36 20 1381207 1381207 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016143 exon7 c.G716A p.R239Q . . . MACROD2 140733 broad.mit.edu 36 20 13930936 13930936 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080676 exon2 c.C49T p.R17C . . . FLRT3 23767 broad.mit.edu 36 20 14255657 14255657 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198391 exon3 c.C496A p.L166I . . . KIF16B 55614 broad.mit.edu 36 20 16285084 16285084 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024704 exon23 c.G3512A p.R1171H . . . BFSP1 631 broad.mit.edu 36 20 17427551 17427551 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161705 exon6 c.C495T p.Y165Y . . . SLC24A3 57419 broad.mit.edu 36 20 19627316 19627316 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020689 exon15 c.G1711A p.G571R . . . CRNKL1 51340 broad.mit.edu 36 20 19971134 19971134 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016652 exon9 c.G1482A p.W494X . . . C20orf26 26074 broad.mit.edu 36 20 20217304 20217304 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015585 exon23 c.C2848A p.L950I . . . PLK1S1 55857 broad.mit.edu 36 20 21090689 21090689 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163022 exon4 c.C274T p.R92X . . . CST8 10047 broad.mit.edu 36 20 23420318 23420318 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005492 exon2 c.G14A p.R5Q . . . ZNF343 79175 broad.mit.edu 36 20 2411857 2411857 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024325 exon6 c.C1750T p.R584X . . . ACSS1 84532 broad.mit.edu 36 20 24952117 24952117 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032501 exon4 c.C792T p.D264D . . . PYGB 5834 broad.mit.edu 36 20 25221100 25221100 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002862 exon17 c.C2028T p.G676G . . . ZNF337 26152 broad.mit.edu 36 20 25605536 25605536 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015655 exon5 c.A388G p.M130V . . . CPXM1 56265 broad.mit.edu 36 20 2727113 2727113 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184699 exon3 c.C411A p.S137S . . . PTPRA 5786 broad.mit.edu 36 20 2893773 2893773 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080840 exon5 c.A340G p.T114A . . . COX4I2 84701 broad.mit.edu 36 20 29690504 29690504 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032609 exon2 c.G23A p.S8N . . . COX4I2 84701 broad.mit.edu 36 20 29696289 29696289 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032609 exon5 c.G437A p.R146H . . . ASXL1 171023 broad.mit.edu 36 20 30488165 30488165 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015338 exon12 c.C3989A p.P1330H . . . C20orf112 140688 broad.mit.edu 36 20 30504459 30504459 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080616 exon6 c.G777A p.T259T . . . FASTKD5 60493 broad.mit.edu 36 20 3075474 3075474 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021826 exon2 c.G2243A p.R748H . . . CBFA2T2 9139 broad.mit.edu 36 20 31695869 31695869 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001032999 exon11 c.C1544T p.A515V . . . GGT7 2686 broad.mit.edu 36 20 32901456 32901456 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178026 exon14 c.G1794A p.P598P . . . MYH7B 57644 broad.mit.edu 36 20 33048556 33048556 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020884 exon31 c.C3402T p.S1134S . . . UQCC 55245 broad.mit.edu 36 20 33365942 33365942 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018244 exon8 c.C614T p.T205I . . . CPNE1 8904 broad.mit.edu 36 20 33683901 33683901 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152927 exon4 c.G261A p.E87E . . . C20orf4 25980 broad.mit.edu 36 20 34291722 34291722 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015511 exon2 c.G518A p.R173H . . . TGIF2 60436 broad.mit.edu 36 20 34640677 34640677 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199535 exon2 c.C86T p.S29L . . . GFRA4 64096 broad.mit.edu 36 20 3588864 3588864 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022139 exon5 c.C670T p.P224S . . . TGM2 7052 broad.mit.edu 36 20 36192986 36192986 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004613 exon12 c.G1836A p.P612P . . . PPP1R16B 26051 broad.mit.edu 36 20 36970189 36970189 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172735 exon9 c.G1007A p.R336Q . . . PPP1R16B 26051 broad.mit.edu 36 20 36980332 36980332 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172735 exon10 c.C1187T p.A396V . . . PPP1R16B 26051 broad.mit.edu 36 20 36980545 36980545 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172735 exon10 c.C1400T p.T467M . . . FAM83D 81610 broad.mit.edu 36 20 37013886 37013886 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030919 exon4 c.C1157T p.A386V . . . TOP1 7150 broad.mit.edu 36 20 39146556 39146556 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003286 exon8 c.A548C p.K183T . . . PLCG1 5335 broad.mit.edu 36 20 39236213 39236213 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002660 exon31 c.G3681A p.T1227T . . . PLCG1 5335 broad.mit.edu 36 20 39236317 39236317 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002660 exon31 c.G3785A p.R1262H . . . ZHX3 23051 broad.mit.edu 36 20 39265547 39265547 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015035 exon3 c.C1424T p.A475V . . . ZHX3 23051 broad.mit.edu 36 20 39266766 39266766 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015035 exon3 c.C205T p.R69W . . . EMILIN3 90187 broad.mit.edu 36 20 39425804 39425804 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052846 exon3 c.G402A p.T134T . . . CHD6 84181 broad.mit.edu 36 20 39559497 39559497 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032221 exon8 c.G1033A p.A345T . . . PTPRT 11122 broad.mit.edu 36 20 40740053 40740053 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133170 exon7 c.C1020T p.V340V . . . SMOX 54498 broad.mit.edu 36 20 4110550 4110550 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175840 exon4 c.G536A p.R179H . . . CSNK2A1 1457 broad.mit.edu 36 20 412627 412627 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001895 exon13 c.C1154A p.A385D . . . SGK2 10110 broad.mit.edu 36 20 41602866 41602866 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032107 exon21 c.C2325T p.D775D . . . IFT52 51098 broad.mit.edu 36 20 41704639 41704639 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016004 exon13 c.C1227T p.H409H . . . HNF4A 3172 broad.mit.edu 36 20 42468199 42468199 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001030003 exon2 c.C137T p.T46M . . . ADA 100 broad.mit.edu 36 20 42684910 42684910 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000022 exon8 c.C754A p.L252M . . . ADA 100 broad.mit.edu 36 20 42686335 42686335 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000022 exon6 c.C528T p.T176T . . . DNTTIP1 116092 broad.mit.edu 36 20 43857415 43857415 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052951 exon4 c.G298A p.V100M . . . ACOT8 10005 broad.mit.edu 36 20 43905738 43905738 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005469 exon5 c.G676A p.V226M . . . CTSA 5476 broad.mit.edu 36 20 43956109 43956109 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000308 exon8 c.C822T p.C274C . . . SLC12A5 57468 broad.mit.edu 36 20 44097574 44097574 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020708 exon3 c.C272T p.P91L . . . SLC12A5 57468 broad.mit.edu 36 20 44107085 44107085 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020708 exon12 c.G1468A p.G490R . . . ELMO2 63916 broad.mit.edu 36 20 44435569 44435569 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182764 exon15 c.G1292A p.R431H . . . SLC2A10 81031 broad.mit.edu 36 20 44787504 44787504 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030777 exon2 c.C422T p.A141V . . . ZMYND8 23613 broad.mit.edu 36 20 45308250 45308250 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012408 exon14 c.C2193T p.S731S . . . NCOA3 8202 broad.mit.edu 36 20 45713391 45713391 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174087 exon20 c.G3907A p.A1303T . . . SULF2 55959 broad.mit.edu 36 20 45740839 45740839 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198596 exon8 c.G1181A p.R394Q . . . PREX1 57580 broad.mit.edu 36 20 46797824 46797824 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020820 exon2 c.G220A p.A74T . . . CSE1L 1434 broad.mit.edu 36 20 47122287 47122287 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001316 exon9 c.G826A p.A276T . . . PTGIS 5740 broad.mit.edu 36 20 47589564 47589564 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000961 exon5 c.G623A p.R208H . . . TMEM189-UBE2V1 387522 broad.mit.edu 36 20 48178032 48178032 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199129 exon5 c.T578C p.F193S . . . SLC23A2 9962 broad.mit.edu 36 20 4841594 4841594 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203327 exon4 c.G139A p.G47S . . . BCAS4 55653 broad.mit.edu 36 20 48891758 48891758 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198799 exon4 c.G403A p.V135M . . . NFATC2 4773 broad.mit.edu 36 20 49525524 49525524 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012340 exon4 c.C1413T p.H471H . . . ZFP64 55734 broad.mit.edu 36 20 50202139 50202139 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018197 exon6 c.G1999A p.A667T . . . CDS2 8760 broad.mit.edu 36 20 5105302 5105302 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003818 exon4 c.C300T p.C100C . . . AURKA 6790 broad.mit.edu 36 20 54381931 54381931 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198436 exon8 c.G794A p.G265E . . . C20orf107 388799 broad.mit.edu 36 20 54533451 54533451 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012971 exon1 c.G180A p.W60X . . . RBM38 55544 broad.mit.edu 36 20 55401214 55401214 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017495 exon2 c.C335T p.A112V . . . PCK1 5105 broad.mit.edu 36 20 55573026 55573026 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002591 exon8 c.G1269A p.P423P . . . NPEPL1 79716 broad.mit.edu 36 20 56702917 56702917 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024663 exon3 c.C370T p.R124C . . . GNAS 2778 broad.mit.edu 36 20 56861763 56861763 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080425 exon1 c.C48T p.R16R . . . ZNF831 128611 broad.mit.edu 36 20 57262827 57262827 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178457 exon5 c.G4668A p.S1556S . . . SYCP2 10388 broad.mit.edu 36 20 57900597 57900597 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014258 exon23 c.C2207T p.S736L . . . SYCP2 10388 broad.mit.edu 36 20 57901137 57901137 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014258 exon22 c.T1808C p.L603S . . . LRRN4 164312 broad.mit.edu 36 20 5969805 5969805 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152611 exon5 c.G2086A p.A696T . . . CDH4 1002 broad.mit.edu 36 20 59919014 59919014 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001794 exon9 c.C1330T p.R444C . . . GTPBP5 26164 broad.mit.edu 36 20 60201922 60201922 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015666 exon2 c.C51T p.G17G . . . SLC17A9 63910 broad.mit.edu 36 20 61069209 61069209 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022082 exon13 c.C1223A p.A408D . . . GMEB2 26205 broad.mit.edu 36 20 61691898 61691898 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012384 exon10 c.C1581T p.H527H . . . GMEB2 26205 broad.mit.edu 36 20 61693906 61693906 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012384 exon9 c.G865A p.G289S . . . ZBTB46 140685 broad.mit.edu 36 20 61892203 61892203 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025224 exon2 c.G352A p.V118M . . . TPD52L2 7165 broad.mit.edu 36 20 61975596 61975596 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199363 exon3 c.C297T p.D99D . . . BMP2 650 broad.mit.edu 36 20 6707223 6707223 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001200 exon3 c.C678T p.F226F . . . C20orf54 113278 broad.mit.edu 36 20 693893 693893 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033409 exon2 c.G526A p.V176I . . . PLCB1 23236 broad.mit.edu 36 20 8703222 8703222 + Silent SNP G T T rs45464693 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182734 exon27 c.G2967T p.T989T . . . POTED 317754 broad.mit.edu 36 21 13904854 13904854 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174981 exon1 c.G434A p.R145K . . . TMPRSS15 5651 broad.mit.edu 36 21 18697669 18697669 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002772 exon1 c.C142T p.R48X . . . ADAMTS5 11096 broad.mit.edu 36 21 27259743 27259743 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007038 exon1 c.C839T p.A280V . . . LTN1 26046 broad.mit.edu 36 21 29240416 29240416 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015565 exon20 c.G3690A p.E1230E . . . KRTAP27-1 643812 broad.mit.edu 36 21 30631644 30631644 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077711 exon1 c.G214A p.D72N . . . KRTAP13-1 140258 broad.mit.edu 36 21 30690378 30690378 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181599 exon1 c.G103A p.V35I . . . TIAM1 7074 broad.mit.edu 36 21 31446925 31446925 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003253 exon20 c.C3266T p.T1089M . . . SFRS15 57466 broad.mit.edu 36 21 31966447 31966447 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145444 exon19 c.G2535A p.Q845Q . . . SYNJ1 8867 broad.mit.edu 36 21 32994174 32994174 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003895 exon4 c.C441T p.I147I . . . SON 6651 broad.mit.edu 36 21 33846772 33846772 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032195 exon3 c.G3365A p.R1122H . . . TTC3 7267 broad.mit.edu 36 21 37447325 37447325 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001894 exon27 c.T2618C p.V873A . . . ERG 2078 broad.mit.edu 36 21 38697471 38697471 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136154 exon6 c.G440A p.R147Q . . . UBASH3A 53347 broad.mit.edu 36 21 42711665 42711665 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001895 exon6 c.G810A p.T270T . . . PDE9A 5152 broad.mit.edu 36 21 43062262 43062262 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001574 exon15 c.A1260C p.K420N . . . TRAPPC10 7109 broad.mit.edu 36 21 44323917 44323917 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003274 exon12 c.C1514A p.A505E . . . ITGB2 3689 broad.mit.edu 36 21 45155113 45155113 + Missense_Mutation SNP G A A rs61737078 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127491 exon2 c.C13T p.R5C . . . PCNT 5116 broad.mit.edu 36 21 46594100 46594100 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006031 exon8 c.G1282A p.G428S . . . DIP2A 23181 broad.mit.edu 36 21 46802073 46802073 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015151 exon31 c.C3777T p.G1259G . . . S100B 6285 broad.mit.edu 36 21 46846717 46846717 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006272 exon2 c.G40A p.V14I . . . LIPI 149998 broad.mit.edu 36 21 14483275 14483275 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198996 exon2 c.446delA p.N149fs . . . TTC3 7267 broad.mit.edu 36 21 37446113 37446113 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001894 exon26 c.2327delA p.Q776fs . . . MX1 4599 broad.mit.edu 36 21 41739345 41739345 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144925 exon14 c.1109delA p.E370fs . . . PCNT 5116 broad.mit.edu 36 21 46660665 46660665 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006031 exon30 c.6405delG p.T2135fs . . . CECR5 27440 broad.mit.edu 36 22 15999090 15999090 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033070 exon8 c.G1093A p.V365I . . . SLC25A18 83733 broad.mit.edu 36 22 16450834 16450834 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031481 exon9 c.C719T p.T240M . . . MICAL3 57553 broad.mit.edu 36 22 16727516 16727516 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001136004 exon23 c.C3126T p.C1042C . . . DGCR2 9993 broad.mit.edu 36 22 17432389 17432389 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001173534 exon3 c.C388T p.R130W . . . C22orf29 79680 broad.mit.edu 36 22 18219750 18219750 + Missense_Mutation SNP C T T rs9618711 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024627 exon3 c.G35A p.R12H . . . RIMBP3 85376 broad.mit.edu 36 22 18840135 18840135 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015672 exon1 c.C1167T p.R389R . . . KLHL22 84861 broad.mit.edu 36 22 19130820 19130820 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032775 exon6 c.C1449T p.R483R . . . LZTR1 8216 broad.mit.edu 36 22 19671837 19671837 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006767 exon4 c.C365T p.S122L . . . MMP11 4320 broad.mit.edu 36 22 22452685 22452685 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005940 exon3 c.G478A p.A160T . . . SLC2A11 66035 broad.mit.edu 36 22 22554966 22554966 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024938 exon8 c.C894T p.S298S . . . SPECC1L 23384 broad.mit.edu 36 22 23056395 23056395 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145468 exon7 c.C2392T p.R798C . . . SPECC1L 23384 broad.mit.edu 36 22 23138659 23138659 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145468 exon15 c.G3248A p.G1083D . . . ADORA2A 135 broad.mit.edu 36 22 23166712 23166712 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000675 exon3 c.C494T p.A165V . . . SGSM1 129049 broad.mit.edu 36 22 23612668 23612668 + Silent SNP C T T rs34478910 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098497 exon16 c.C1743T p.F581F . . . TMEM211 255349 broad.mit.edu 36 22 23661335 23661335 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001663 exon3 c.G355A p.E119K . . . TFIP11 24144 broad.mit.edu 36 22 25236062 25236062 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012143 exon4 c.G177A p.S59S . . . TBC1D10A 83874 broad.mit.edu 36 22 29025501 29025501 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031937 exon3 c.C349T p.R117W . . . MTFP1 51537 broad.mit.edu 36 22 29153344 29153344 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016498 exon3 c.G382A p.A128T . . . SEC14L3 266629 broad.mit.edu 36 22 29187436 29187436 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174975 exon11 c.C942T p.I314I . . . PES1 23481 broad.mit.edu 36 22 29307518 29307518 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014303 exon7 c.G744A p.P248P . . . TCN2 6948 broad.mit.edu 36 22 29349011 29349011 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184726 exon8 c.C1082T p.A361V . . . DUSP18 150290 broad.mit.edu 36 22 29389695 29389695 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152511 exon2 c.G296A p.R99H . . . DRG1 4733 broad.mit.edu 36 22 30146335 30146335 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004147 exon5 c.G506A p.G169D . . . EIF4ENIF1 56478 broad.mit.edu 36 22 30189873 30189873 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019843 exon5 c.G379A p.V127M . . . TOM1 10043 broad.mit.edu 36 22 34059417 34059417 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135730 exon9 c.G819A p.P273P . . . TRIOBP 11078 broad.mit.edu 36 22 36417194 36417194 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024313 exon6 c.C547T p.R183W . . . TRIOBP 11078 broad.mit.edu 36 22 36450289 36450289 + Missense_Mutation SNP A G G rs71317067 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A A A A Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001039141 exon7 c.A1780G p.T594A . . . BAIAP2L2 80115 broad.mit.edu 36 22 36823049 36823049 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025045 exon7 c.G548A p.R183H . . . SUN2 25777 broad.mit.edu 36 22 37476282 37476282 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199579 exon5 c.G477A p.S159S . . . APOBEC3A 200315 broad.mit.edu 36 22 37687531 37687531 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145699 exon3 c.G368A p.R123H . . . TAB1 10454 broad.mit.edu 36 22 38141574 38141574 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153497 exon3 c.C294T p.A98A . . . CACNA1I 8911 broad.mit.edu 36 22 38405120 38405120 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021096 exon32 c.G5118A p.S1706S . . . EP300 2033 broad.mit.edu 36 22 39902303 39902303 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001429 exon30 c.C4886T p.A1629V . . . SEPT3 55964 broad.mit.edu 36 22 40713574 40713574 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145733 exon5 c.G416T p.W139L . . . FAM109B 150368 broad.mit.edu 36 22 40803958 40803958 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002034 exon3 c.C715T p.R239W . . . CYP2D6 1565 broad.mit.edu 36 22 40854293 40854293 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000106 exon5 c.C670T p.L224L . . . TCF20 6942 broad.mit.edu 36 22 40939972 40939972 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005650 exon1 c.T1284C p.P428P . . . TTLL12 23170 broad.mit.edu 36 22 41909091 41909091 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015140 exon2 c.C186T p.D62D . . . SCUBE1 80274 broad.mit.edu 36 22 42045982 42045982 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173050 exon3 c.G254T p.G85V . . . SAMM50 25813 broad.mit.edu 36 22 42717599 42717599 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015380 exon14 c.G1344T p.M448I . . . PARVB 29780 broad.mit.edu 36 22 42891089 42891089 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003828 exon13 c.G1063A p.A355T . . . FAM118A 55007 broad.mit.edu 36 22 44102509 44102509 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001104595 exon5 c.C423T p.G141G . . . TTC38 55020 broad.mit.edu 36 22 45048469 45048469 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017931 exon4 c.C204T p.H68H . . . CELSR1 9620 broad.mit.edu 36 22 45165811 45165811 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014246 exon16 c.C6186T p.G2062G . . . CELSR1 9620 broad.mit.edu 36 22 45168795 45168795 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014246 exon14 c.T5872G p.W1958G . . . TBC1D22A 25771 broad.mit.edu 36 22 45947875 45947875 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014346 exon13 c.C1496T p.A499V . . . BRD1 23774 broad.mit.edu 36 22 48556760 48556760 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014577 exon9 c.C2654T p.T885M . . . MLC1 23209 broad.mit.edu 36 22 48857450 48857450 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015166 exon7 c.G544A p.A182T . . . MOV10L1 54456 broad.mit.edu 36 22 48880106 48880106 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164104 exon3 c.C390T p.G130G . . . PLXNB2 23654 broad.mit.edu 36 22 49070539 49070539 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012401 exon2 c.C602T p.T201M . . . TYMP 1890 broad.mit.edu 36 22 49313897 49313897 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001953 exon4 c.G426A p.M142I . . . TTN 7273 broad.mit.edu 36 2 179156078 179156079 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133432 exon142 c.38877_38878insA p.K12959fs . . . NPAS2 4862 broad.mit.edu 36 2 100971081 100971081 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002518 exon17 c.G1738A p.G580R . . . NPAS2 4862 broad.mit.edu 36 2 100973248 100973248 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002518 exon18 c.G1926A p.P642P . . . TBC1D8 11138 broad.mit.edu 36 2 101033365 101033365 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102426 exon5 c.C757T p.R253X . . . CREG2 200407 broad.mit.edu 36 2 101338251 101338251 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153836 exon3 c.C621T p.I207I . . . MAP4K4 9448 broad.mit.edu 36 2 101852580 101852580 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145687 exon21 c.C2204T p.T735M . . . IL1R1 3554 broad.mit.edu 36 2 102159637 102159637 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000877 exon11 c.G1696A p.V566M . . . SLC9A4 389015 broad.mit.edu 36 2 102509169 102509169 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011552 exon11 c.G1970A p.R657H . . . GPR45 11250 broad.mit.edu 36 2 105225280 105225280 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007227 exon1 c.G533A p.R178Q . . . NOL10 79954 broad.mit.edu 36 2 10729164 10729164 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024894 exon6 c.A431G p.Y144C . . . POLR1B 84172 broad.mit.edu 36 2 113047838 113047838 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001137604 exon13 c.G2332A p.G778R . . . CHCHD5 84269 broad.mit.edu 36 2 113060028 113060028 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032309 exon2 c.G9A p.A3A . . . CHCHD5 84269 broad.mit.edu 36 2 113062920 113062920 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032309 exon4 c.C316T p.P106S . . . IL1RN 3557 broad.mit.edu 36 2 113605195 113605195 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000577 exon4 c.T254G p.L85R . . . DPP10 57628 broad.mit.edu 36 2 116201953 116201953 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178036 exon9 c.T518C p.F173S . . . NTSR2 23620 broad.mit.edu 36 2 11717663 11717663 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_012344 exon3 c.C946T p.R316C . . . LPIN1 23175 broad.mit.edu 36 2 11828971 11828971 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145693 exon4 c.C311T p.A104V . . . LPIN1 23175 broad.mit.edu 36 2 11862072 11862072 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145693 exon15 c.C1978T p.R660C . . . MARCO 8685 broad.mit.edu 36 2 119416377 119416377 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006770 exon1 c.G31A p.E11K . . . SCTR 6344 broad.mit.edu 36 2 119947500 119947500 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002980 exon4 c.G404A p.R135Q . . . INHBB 3625 broad.mit.edu 36 2 120823163 120823163 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002193 exon2 c.G467A p.R156Q . . . CLASP1 23332 broad.mit.edu 36 2 121892686 121892686 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015282 exon23 c.C2302T p.R768W . . . MYO7B 4648 broad.mit.edu 36 2 128096114 128096114 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080527 exon27 c.C3535T p.R1179C . . . AMMECR1L 83607 broad.mit.edu 36 2 128343537 128343537 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199140 exon6 c.C685T p.R229C . . . IMP4 92856 broad.mit.edu 36 2 130820303 130820303 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033416 exon8 c.G749A p.R250H . . . NCKAP5 344148 broad.mit.edu 36 2 133259024 133259024 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207363 exon14 c.C1830T p.T610T . . . MGAT5 4249 broad.mit.edu 36 2 134902442 134902442 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002410 exon14 c.G1831T p.G611W . . . UBXN4 23190 broad.mit.edu 36 2 136253100 136253100 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014607 exon11 c.C1166T p.A389V . . . DARS 1615 broad.mit.edu 36 2 136435518 136435518 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001349 exon4 c.C238A p.L80I . . . LRP1B 53353 broad.mit.edu 36 2 141015942 141015942 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018557 exon44 c.G7263A p.S2421S . . . ZEB2 9839 broad.mit.edu 36 2 144878998 144878998 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171653 exon4 c.G395A p.R132H . . . TPO 7173 broad.mit.edu 36 2 1459927 1459927 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175721 exon7 c.C882T p.A294A . . . TPO 7173 broad.mit.edu 36 2 1470684 1470684 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175721 exon9 c.C1682T p.T561M . . . KIF5C 3800 broad.mit.edu 36 2 149538202 149538202 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004522 exon11 c.C1152T p.G384G . . . RIF1 55183 broad.mit.edu 36 2 152029656 152029656 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177664 exon30 c.T5376C p.H1792H . . . NEB 4703 broad.mit.edu 36 2 152125382 152125382 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon124 c.C19284T p.H6428H . . . NEB 4703 broad.mit.edu 36 2 152215427 152215427 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon53 c.C7134T p.D2378D . . . NR4A2 4929 broad.mit.edu 36 2 156890685 156890685 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006186 exon8 c.C1614T p.H538H . . . PKP4 8502 broad.mit.edu 36 2 159227833 159227833 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003628 exon14 c.C2390T p.P797L . . . TANC1 85461 broad.mit.edu 36 2 159759157 159759157 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033394 exon17 c.C2886T p.D962D . . . ITGB6 3694 broad.mit.edu 36 2 160737391 160737391 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000888 exon6 c.G856A p.V286I . . . RBMS1 5937 broad.mit.edu 36 2 160843368 160843368 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002897 exon11 c.C990T p.P330P . . . SLC4A10 57282 broad.mit.edu 36 2 162507641 162507641 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178016 exon16 c.C2034T p.N678N . . . PXDN 7837 broad.mit.edu 36 2 1643733 1643733 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012293 exon14 c.C1764T p.D588D . . . GALNT3 2591 broad.mit.edu 36 2 166314619 166314619 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004482 exon10 c.G1658A p.R553Q . . . GALNT3 2591 broad.mit.edu 36 2 166321866 166321866 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004482 exon7 c.G1329A p.W443X . . . GALNT3 2591 broad.mit.edu 36 2 166324212 166324212 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T G T G Unknown Valid Germline Phase_I Capture Illumina Illumina HiSeq NM_004482 exon5 c.A953C p.K318T . . . SCN1A 6323 broad.mit.edu 36 2 166556233 166556233 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165964 exon26 c.G5714A p.R1905Q . . . SCN7A 6332 broad.mit.edu 36 2 166971165 166971165 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002976 exon25 c.A4220C p.K1407T . . . SPC25 57405 broad.mit.edu 36 2 169454263 169454263 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020675 exon2 c.G13A p.E5K . . . DHRS9 10170 broad.mit.edu 36 2 169648196 169648196 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142270 exon4 c.T425C p.I142T . . . LRP2 4036 broad.mit.edu 36 2 169717678 169717678 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon67 c.G12338A p.G4113D . . . LRP2 4036 broad.mit.edu 36 2 169842595 169842595 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon13 c.G1678A p.A560T . . . LRP2 4036 broad.mit.edu 36 2 169855613 169855613 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon8 c.G910A p.G304R . . . UBR3 130507 broad.mit.edu 36 2 170566141 170566141 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172070 exon27 c.T4000G p.C1334G . . . GAD1 2571 broad.mit.edu 36 2 171410267 171410267 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000817 exon8 c.G757A p.A253T . . . GAD1 2571 broad.mit.edu 36 2 171414082 171414082 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000817 exon12 c.G1160A p.R387H . . . SLC25A12 8604 broad.mit.edu 36 2 172358427 172358427 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003705 exon14 c.G1402A p.A468T . . . WIPF1 7456 broad.mit.edu 36 2 175144886 175144886 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077269 exon5 c.C893T p.P298L . . . HOXD3 3232 broad.mit.edu 36 2 176744541 176744541 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006898 exon3 c.C592T p.R198C . . . PDE11A 50940 broad.mit.edu 36 2 178644954 178644954 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016953 exon1 c.C457T p.R153X . . . OSBPL6 114880 broad.mit.edu 36 2 178909335 178909335 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032523 exon9 c.C719T p.T240M . . . TTN 7273 broad.mit.edu 36 2 179130003 179130003 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon158 c.G60928A p.V20310M . . . TTN 7273 broad.mit.edu 36 2 179147311 179147311 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.G44598A p.Q14866Q . . . TTN 7273 broad.mit.edu 36 2 179150747 179150747 + Silent SNP A G G rs34943774 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon151 c.T41456C p.L13819P . . . TTN 7273 broad.mit.edu 36 2 179167196 179167196 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon125 c.C30974T p.S10325L . . . TTN 7273 broad.mit.edu 36 2 179170577 179170577 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon122 c.C30282T p.G10094G . . . TTN 7273 broad.mit.edu 36 2 179193237 179193237 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon76 c.C19061T p.A6354V . . . TTN 7273 broad.mit.edu 36 2 179282557 179282557 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon96 c.G25002A p.T8334T . . . TTN 7273 broad.mit.edu 36 2 179298937 179298937 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon67 c.G16625T p.G5542V . . . TTN 7273 broad.mit.edu 36 2 179304057 179304057 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon57 c.C13848A p.G4616G . . . TTN 7273 broad.mit.edu 36 2 179348036 179348036 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133379 exon29 c.A6647C p.E2216A . . . TTN 7273 broad.mit.edu 36 2 179350240 179350240 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133379 exon27 c.C4695T p.V1565V . . . CCDC141 285025 broad.mit.edu 36 2 179410373 179410373 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173648 exon23 c.C3818T p.A1273V . . . CERKL 375298 broad.mit.edu 36 2 182121817 182121817 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201548 exon7 c.T908G p.L303R . . . ZNF804A 91752 broad.mit.edu 36 2 185511485 185511485 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194250 exon4 c.A3117T p.E1039D . . . MYT1L 23040 broad.mit.edu 36 2 1872079 1872079 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015025 exon16 c.G2455A p.V819I . . . MYT1L 23040 broad.mit.edu 36 2 1894841 1894841 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015025 exon12 c.C1661T p.T554M . . . ASNSD1 54529 broad.mit.edu 36 2 190240823 190240823 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019048 exon5 c.T1553C p.L518S . . . STAT1 6772 broad.mit.edu 36 2 191559851 191559851 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007315 exon14 c.A1195G p.S399G . . . MYO1B 4430 broad.mit.edu 36 2 191965158 191965158 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012223 exon19 c.C2062T p.R688X . . . OSR1 130497 broad.mit.edu 36 2 19416943 19416943 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145260 exon2 c.G105A p.S35S . . . DNAH7 56171 broad.mit.edu 36 2 196372321 196372321 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018897 exon55 c.G10297A p.V3433M . . . PGAP1 80055 broad.mit.edu 36 2 197414247 197414247 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024989 exon27 c.G2725A p.V909I . . . PLCL1 5334 broad.mit.edu 36 2 198657818 198657818 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006226 exon2 c.C1332T p.L444L . . . SPATS2L 26010 broad.mit.edu 36 2 201045866 201045866 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015535 exon12 c.C1127T p.A376V . . . AOX1 316 broad.mit.edu 36 2 201166171 201166171 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159 exon2 c.C103T p.L35F . . . AOX1 316 broad.mit.edu 36 2 201235907 201235907 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159 exon31 c.T3513C p.V1171V . . . NIF3L1 60491 broad.mit.edu 36 2 201476542 201476542 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021824 exon7 c.C949T p.R317X . . . CASP8 841 broad.mit.edu 36 2 201858275 201858275 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033356 exon7 c.C1249T p.R417X . . . ALS2 57679 broad.mit.edu 36 2 202288796 202288796 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020919 exon25 c.G3848A p.G1283E . . . ALS2 57679 broad.mit.edu 36 2 202299677 202299677 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020919 exon18 c.A3137T p.D1046V . . . ICA1L 130026 broad.mit.edu 36 2 203387719 203387719 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138468 exon9 c.G817A p.D273N . . . NBEAL1 65065 broad.mit.edu 36 2 203775676 203775676 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114132 exon50 c.C7346T p.T2449I . . . NRP2 8828 broad.mit.edu 36 2 206316206 206316206 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_201266 exon9 c.A1326G p.S442S . . . NRP2 8828 broad.mit.edu 36 2 206367860 206367860 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201266 exon17 c.G2629A p.V877I . . . ZDBF2 57683 broad.mit.edu 36 2 206881017 206881017 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020923 exon5 c.C3520T p.R1174X . . . MDH1B 130752 broad.mit.edu 36 2 207328068 207328068 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039845 exon5 c.C820T p.R274C . . . PIKFYVE 200576 broad.mit.edu 36 2 208903621 208903621 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015040 exon23 c.G3921A p.Q1307Q . . . PIKFYVE 200576 broad.mit.edu 36 2 208912393 208912393 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015040 exon30 c.G4679A p.R1560H . . . ERBB4 2066 broad.mit.edu 36 2 212275132 212275132 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005235 exon12 c.C1294A p.L432M . . . BARD1 580 broad.mit.edu 36 2 215342273 215342273 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000465 exon5 c.A1323G p.I441M . . . SMARCAL1 50485 broad.mit.edu 36 2 217020070 217020070 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014140 exon11 c.C1795T p.P599S . . . TNS1 7145 broad.mit.edu 36 2 218391163 218391163 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022648 exon24 c.C3825A p.H1275Q . . . ZNF142 7701 broad.mit.edu 36 2 219217741 219217741 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105537 exon8 c.G1742A p.R581H . . . BCS1L 617 broad.mit.edu 36 2 219234879 219234879 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004328 exon5 c.T614C p.V205A . . . TTLL4 9654 broad.mit.edu 36 2 219312111 219312111 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014640 exon3 c.T1468C p.S490P . . . CCDC108 255101 broad.mit.edu 36 2 219600711 219600711 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194302 exon13 c.C2116T p.P706S . . . ABCB6 10058 broad.mit.edu 36 2 219786248 219786248 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005689 exon12 c.C1764T p.G588G . . . ATG9A 79065 broad.mit.edu 36 2 219797270 219797270 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024085 exon7 c.G1067A p.R356H . . . DES 1674 broad.mit.edu 36 2 219993241 219993241 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001927 exon3 c.C664T p.R222C . . . SPEG 10290 broad.mit.edu 36 2 220037524 220037524 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173476 exon4 c.C284T p.A95V . . . ACCN4 55515 broad.mit.edu 36 2 220108253 220108253 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018674 exon6 c.C1573A p.L525M . . . TMEM198 130612 broad.mit.edu 36 2 220122760 220122760 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005209 exon5 c.C1023T p.D341D . . . PAX3 5077 broad.mit.edu 36 2 222793295 222793295 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181461 exon7 c.C981T p.T327T . . . FAM124B 79843 broad.mit.edu 36 2 224974276 224974276 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122779 exon1 c.G454A p.A152T . . . COL4A4 1286 broad.mit.edu 36 2 227625337 227625337 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000092 exon32 c.G2896A p.A966T . . . SLC16A14 151473 broad.mit.edu 36 2 230619521 230619521 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152527 exon4 c.A565G p.R189G . . . ALPI 248 broad.mit.edu 36 2 233031239 233031239 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001631 exon9 c.G1060A p.D354N . . . ECEL1 9427 broad.mit.edu 36 2 233055413 233055413 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004826 exon12 c.G1755A p.A585A . . . DGKD 8527 broad.mit.edu 36 2 234021508 234021508 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152879 exon13 c.G1456A p.A486T . . . DGKD 8527 broad.mit.edu 36 2 234040522 234040522 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152879 exon28 c.G3358A p.V1120M . . . UGT1A9 54600 broad.mit.edu 36 2 234246083 234246083 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021027 exon1 c.C764T p.T255M . . . TRPM8 79054 broad.mit.edu 36 2 234556601 234556601 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024080 exon20 c.G2755A p.V919M . . . SH3BP4 23677 broad.mit.edu 36 2 235626039 235626039 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014521 exon5 c.G2573A p.R858Q . . . AGAP1 116987 broad.mit.edu 36 2 236610024 236610024 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037131 exon14 c.C1726T p.R576W . . . IQCA1 79781 broad.mit.edu 36 2 237038908 237038908 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024726 exon6 c.G905A p.R302Q . . . IQCA1 79781 broad.mit.edu 36 2 237070594 237070594 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024726 exon2 c.C287T p.T96M . . . COL6A3 1293 broad.mit.edu 36 2 237942231 237942231 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057166 exon7 c.C2793T p.D931D . . . COL6A3 1293 broad.mit.edu 36 2 237945610 237945610 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057166 exon6 c.C1968T p.D656D . . . COL6A3 1293 broad.mit.edu 36 2 237954571 237954571 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057166 exon3 c.C402T p.A134A . . . SCLY 51540 broad.mit.edu 36 2 238655538 238655538 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016510 exon6 c.C726T p.R242R . . . ASB1 51665 broad.mit.edu 36 2 239017825 239017825 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040445 exon4 c.G598A p.A200T . . . PRR21 643905 broad.mit.edu 36 2 240630669 240630669 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001080835 exon1 c.C404G p.P135R . . . MFSD2B 388931 broad.mit.edu 36 2 24093244 24093244 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080473 exon4 c.G373A p.A125T . . . GPC1 2817 broad.mit.edu 36 2 241051512 241051512 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002081 exon4 c.G793A p.A265T . . . CAPN10 11132 broad.mit.edu 36 2 241179082 241179082 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023085 exon3 c.C451A p.L151M . . . CAPN10 11132 broad.mit.edu 36 2 241182043 241182043 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023085 exon5 c.C736T p.R246W . . . THAP4 51078 broad.mit.edu 36 2 242194428 242194428 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164356 exon2 c.C138T p.H46H . . . ATG4B 23192 broad.mit.edu 36 2 242242715 242242715 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013325 exon5 c.A365G p.Y122C . . . ITSN2 50618 broad.mit.edu 36 2 24389891 24389891 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019595 exon4 c.C130T p.Q44X . . . NCOA1 8648 broad.mit.edu 36 2 24735117 24735117 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003743 exon3 c.C67T p.P23S . . . ADCY3 109 broad.mit.edu 36 2 24995184 24995184 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004036 exon1 c.G177A p.P59P . . . C2orf39 92749 broad.mit.edu 36 2 26506089 26506089 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145038 exon5 c.G630T p.Q210H . . . C2orf39 92749 broad.mit.edu 36 2 26507176 26507176 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145038 exon6 c.C697T p.R233C . . . CENPA 1058 broad.mit.edu 36 2 26869175 26869175 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001809 exon3 c.G258A p.W86X . . . GTF3C2 2976 broad.mit.edu 36 2 27413928 27413928 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035521 exon6 c.C952T p.R318X . . . FNDC4 64838 broad.mit.edu 36 2 27570726 27570726 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022823 exon3 c.A245G p.Q82R . . . GCKR 2646 broad.mit.edu 36 2 27579988 27579988 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001486 exon9 c.G748A p.G250R . . . C2orf16 84226 broad.mit.edu 36 2 27656925 27656925 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032266 exon1 c.G3982T p.G1328X . . . MRPL33 9553 broad.mit.edu 36 2 27850875 27850875 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004891 exon3 c.T122C p.L41P . . . FAM179A 165186 broad.mit.edu 36 2 29100736 29100736 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199280 exon13 c.G1845A p.A615A . . . ALK 238 broad.mit.edu 36 2 29460205 29460205 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004304 exon5 c.C1179T p.I393I . . . EHD3 30845 broad.mit.edu 36 2 31311121 31311121 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014600 exon1 c.G130A p.E44K . . . EHD3 30845 broad.mit.edu 36 2 31320794 31320794 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014600 exon2 c.C378T p.N126N . . . SPAST 6683 broad.mit.edu 36 2 32215507 32215507 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199436 exon10 c.G1283A p.R428H . . . TSSC1 7260 broad.mit.edu 36 2 3240201 3240201 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003310 exon4 c.G292A p.V98M . . . BIRC6 57448 broad.mit.edu 36 2 32543295 32543295 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016252 exon25 c.T5156C p.V1719A . . . LTBP1 4052 broad.mit.edu 36 2 33379120 33379120 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000627 exon17 c.T2356C p.S786P . . . TTC15 51112 broad.mit.edu 36 2 3370577 3370577 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016030 exon2 c.C176T p.A59V . . . CRIM1 51232 broad.mit.edu 36 2 36523312 36523312 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016441 exon4 c.G799A p.A267T . . . CRIM1 51232 broad.mit.edu 36 2 36560268 36560268 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016441 exon7 c.C1299T p.C433C . . . CRIM1 51232 broad.mit.edu 36 2 36598157 36598157 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016441 exon12 c.G2174A p.R725H . . . VIT 5212 broad.mit.edu 36 2 36835649 36835649 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177972 exon5 c.C357T p.N119N . . . STRN 6801 broad.mit.edu 36 2 36980278 36980278 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003162 exon6 c.C687T p.S229S . . . CCDC75 253635 broad.mit.edu 36 2 37169050 37169050 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174931 exon2 c.G10A p.E4K . . . GALM 130589 broad.mit.edu 36 2 38756579 38756579 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138801 exon2 c.A212G p.Y71C . . . GALM 130589 broad.mit.edu 36 2 38762021 38762021 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138801 exon3 c.G441A p.W147X . . . DHX57 90957 broad.mit.edu 36 2 38934709 38934709 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198963 exon9 c.C2021T p.T674I . . . KCNG3 170850 broad.mit.edu 36 2 42524978 42524978 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133329 exon2 c.G911A p.R304H . . . LRPPRC 10128 broad.mit.edu 36 2 43977323 43977323 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133259 exon35 c.C3854T p.P1285L . . . EPAS1 2034 broad.mit.edu 36 2 46456417 46456417 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001430 exon8 c.C971T p.T324M . . . FBXO11 80204 broad.mit.edu 36 2 47919534 47919534 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190274 exon4 c.C555A p.R185R . . . NRXN1 9378 broad.mit.edu 36 2 50135603 50135603 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135659 exon21 c.G3922A p.D1308N . . . NRXN1 9378 broad.mit.edu 36 2 51108436 51108436 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135659 exon2 c.G480A p.P160P . . . C2orf63 130162 broad.mit.edu 36 2 55293321 55293321 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152385 exon5 c.C491A p.P164H . . . BCL11A 53335 broad.mit.edu 36 2 60542128 60542128 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022893 exon4 c.G1423A p.D475N . . . BCL11A 53335 broad.mit.edu 36 2 60626895 60626895 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138559 exon2 c.G100A p.G34S . . . REL 5966 broad.mit.edu 36 2 61002575 61002575 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002908 exon11 c.C1261T p.R421C . . . EHBP1 23301 broad.mit.edu 36 2 63059842 63059842 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142614 exon14 c.C2476T p.R826X . . . OTX1 5013 broad.mit.edu 36 2 63136168 63136168 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199770 exon5 c.G278A p.C93Y . . . BMP10 27302 broad.mit.edu 36 2 68946858 68946858 + Silent SNP G A A rs2231343 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014482 exon2 c.C684T p.H228H . . . ANXA4 307 broad.mit.edu 36 2 69888609 69888609 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001153 exon6 c.G374A p.R125H . . . ADD2 119 broad.mit.edu 36 2 70759354 70759354 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185054 exon11 c.C1373A p.P458H . . . ADD2 119 broad.mit.edu 36 2 70764280 70764280 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185054 exon10 c.G1076A p.R359Q . . . RNF144A 9781 broad.mit.edu 36 2 7078089 7078089 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014746 exon6 c.G336A p.P112P . . . CLEC4F 165530 broad.mit.edu 36 2 70897720 70897720 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_173535 exon4 c.C301T p.R101X . . . ZNF638 27332 broad.mit.edu 36 2 71515385 71515385 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014497 exon28 c.C5877T p.F1959F . . . DYSF 8291 broad.mit.edu 36 2 71650523 71650523 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130982 exon28 c.G2972A p.R991Q . . . RAB11FIP5 26056 broad.mit.edu 36 2 73169570 73169570 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015470 exon2 c.C813T p.G271G . . . ALMS1 7840 broad.mit.edu 36 2 73528665 73528665 + Silent SNP T A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015120 exon8 c.T1500A p.T500T . . . TET3 200424 broad.mit.edu 36 2 74168583 74168583 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144993 exon4 c.G2393A p.R798H . . . SLC4A5 57835 broad.mit.edu 36 2 74336517 74336517 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021196 exon8 c.C918T p.N306N . . . TTC31 64427 broad.mit.edu 36 2 74573725 74573725 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022492 exon13 c.C1432T p.R478X . . . HTRA2 27429 broad.mit.edu 36 2 74612323 74612323 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013247 exon5 c.G1031A p.R344H . . . SEMA4F 10505 broad.mit.edu 36 2 74760705 74760705 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004263 exon14 c.G2174A p.R725Q . . . HK2 3099 broad.mit.edu 36 2 74954944 74954944 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000189 exon7 c.C735T p.I245I . . . CTNNA2 1496 broad.mit.edu 36 2 80662453 80662453 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004389 exon14 c.C2008T p.R670W . . . ATOH8 84913 broad.mit.edu 36 2 85844799 85844799 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032827 exon2 c.C943T p.R315C . . . KDM3A 55818 broad.mit.edu 36 2 86550900 86550900 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146688 exon11 c.G1582A p.E528K . . . KIDINS220 57498 broad.mit.edu 36 2 8854399 8854399 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020738 exon11 c.G1051A p.V351M . . . PROM2 150696 broad.mit.edu 36 2 95309446 95309446 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144707 exon11 c.C1401T p.G467G . . . ASTL 431705 broad.mit.edu 36 2 96162921 96162921 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002036 exon5 c.G425A p.R142K . . . SNRNP200 23020 broad.mit.edu 36 2 96308979 96308979 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014014 exon36 c.C5070T p.H1690H . . . FER1L5 90342 broad.mit.edu 36 2 96729449 96729449 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001113382 exon43 c.G4916A p.R1639H . . . REV1 51455 broad.mit.edu 36 2 99387456 99387456 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016316 exon18 c.C2928T p.G976G . . . AFF3 3899 broad.mit.edu 36 2 99551762 99551762 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025108 exon18 c.A3041G p.H1014R . . . AFF3 3899 broad.mit.edu 36 2 99576631 99576631 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025108 exon14 c.C1999T p.R667C . . . RBM45 129831 broad.mit.edu 36 2 178697166 178697166 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152945 exon8 c.1135delA p.K379fs . . . TTN 7273 broad.mit.edu 36 2 179125270 179125270 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003319 exon163 c.63407delA p.N21136fs . . . AOX1 316 broad.mit.edu 36 2 201194169 201194171 + In_Frame_Del DEL CTT - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 CTT CTT Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001159 exon18 c.1956_1958del p.652_653del . . . BIRC6 57448 broad.mit.edu 36 2 32520703 32520703 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016252 exon18 c.4011delA p.R1337fs . . . FILIP1L 11259 broad.mit.edu 36 3 101050388 101050388 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182909 exon5 c.C2822T p.T941M . . . IRAK2 3656 broad.mit.edu 36 3 10226273 10226273 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001570 exon4 c.G425T p.G142V . . . IRAK2 3656 broad.mit.edu 36 3 10239481 10239481 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001570 exon9 c.T1175G p.L392R . . . SENP7 57337 broad.mit.edu 36 3 102527571 102527571 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020654 exon24 c.G3059T p.W1020L . . . ATP2B2 491 broad.mit.edu 36 3 10357224 10357224 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001683 exon17 c.C2947T p.R983W . . . BBX 56987 broad.mit.edu 36 3 108980039 108980039 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142568 exon13 c.C2186T p.P729L . . . MYH15 22989 broad.mit.edu 36 3 109660899 109660899 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014981 exon19 c.G2080T p.G694C . . . ABHD10 55347 broad.mit.edu 36 3 113193053 113193053 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018394 exon5 c.G716A p.C239Y . . . ATG7 10533 broad.mit.edu 36 3 11364359 11364359 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006395 exon12 c.C1134T p.G378G . . . BOC 91653 broad.mit.edu 36 3 114452140 114452140 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033254 exon4 c.C146T p.P49L . . . BOC 91653 broad.mit.edu 36 3 114474232 114474232 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033254 exon7 c.A953G p.Q318R . . . SIDT1 54847 broad.mit.edu 36 3 114825213 114825213 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017699 exon23 c.C2250T p.T750T . . . KIAA2018 205717 broad.mit.edu 36 3 114857104 114857104 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009899 exon7 c.C6115T p.R2039C . . . KIAA2018 205717 broad.mit.edu 36 3 114857984 114857984 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009899 exon7 c.G5235T p.Q1745H . . . ZNF80 7634 broad.mit.edu 36 3 115438291 115438291 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007136 exon1 c.C321T p.C107C . . . LSAMP 4045 broad.mit.edu 36 3 117043393 117043393 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002338 exon6 c.T908C p.L303P . . . PLA1A 51365 broad.mit.edu 36 3 120830357 120830357 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015900 exon10 c.C1241T p.T414I . . . GOLGB1 2804 broad.mit.edu 36 3 122895683 122895683 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004487 exon13 c.A6362G p.E2121G . . . PARP14 54625 broad.mit.edu 36 3 123882425 123882425 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017554 exon1 c.C5T p.A2V . . . PARP14 54625 broad.mit.edu 36 3 123901289 123901289 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017554 exon6 c.G1198T p.V400F . . . MYLK 4638 broad.mit.edu 36 3 124841863 124841863 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053025 exon28 c.A4798G p.R1600G . . . MYLK 4638 broad.mit.edu 36 3 124935255 124935255 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053025 exon10 c.G1278T p.K426N . . . KALRN 8997 broad.mit.edu 36 3 125466042 125466042 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003947 exon4 c.G265A p.V89M . . . MKRN2 23609 broad.mit.edu 36 3 12585439 12585439 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014160 exon2 c.G92T p.S31I . . . ALDH1L1 10840 broad.mit.edu 36 3 127333007 127333007 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012190 exon13 c.G1533A p.A511A ALDH1L1,large_intestine,colon,Substitution - Missense,-1 . . ALDH1L1 10840 broad.mit.edu 36 3 127358994 127358994 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012190 exon4 c.C410T p.A137V . . . UROC1 131669 broad.mit.edu 36 3 127702287 127702287 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144639 exon11 c.G1086A p.T362T . . . PLXNA1 5361 broad.mit.edu 36 3 128193069 128193069 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032242 exon2 c.C1347T p.F449F . . . IQSEC1 9922 broad.mit.edu 36 3 12925003 12925003 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014869 exon12 c.C2643T p.G881G . . . RUVBL1 8607 broad.mit.edu 36 3 129314433 129314433 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003707 exon3 c.C349T p.R117C . . . C3orf25 90288 broad.mit.edu 36 3 130610260 130610260 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207307 exon6 c.G1167A p.R389R . . . C3orf25 90288 broad.mit.edu 36 3 130619801 130619801 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207307 exon3 c.G667A p.A223T . . . IFT122 55764 broad.mit.edu 36 3 130668528 130668528 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052989 exon8 c.C669T p.Y223Y . . . COL6A6 131873 broad.mit.edu 36 3 131768383 131768383 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102608 exon4 c.C1430T p.A477V . . . CPNE4 131034 broad.mit.edu 36 3 133106948 133106948 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130808 exon2 c.C30T p.S10S . . . DNAJC13 23317 broad.mit.edu 36 3 133655181 133655181 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015268 exon8 c.C793T p.R265C . . . DNAJC13 23317 broad.mit.edu 36 3 133661843 133661843 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015268 exon14 c.G1509A p.S503S . . . CNTN6 27255 broad.mit.edu 36 3 1342510 1342510 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014461 exon9 c.T958A p.W320R . . . AMOTL2 51421 broad.mit.edu 36 3 135569118 135569118 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016201 exon3 c.C952T p.L318L . . . EPHB1 2047 broad.mit.edu 36 3 136153173 136153173 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004441 exon3 c.G394A p.A132T . . . CHCHD4 131474 broad.mit.edu 36 3 14138468 14138468 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144636 exon2 c.C11T p.S4L . . . TRIM42 287015 broad.mit.edu 36 3 141884637 141884637 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152616 exon2 c.G985A p.A329T . . . RASA2 5922 broad.mit.edu 36 3 142755401 142755401 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006506 exon6 c.C540T p.C180C . . . ATR 545 broad.mit.edu 36 3 143763928 143763928 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184 exon4 c.C1006T p.R336W . . . SLC6A6 6533 broad.mit.edu 36 3 14483146 14483146 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003043 exon7 c.G851A p.R284H . . . ZIC1 7545 broad.mit.edu 36 3 148610880 148610880 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003412 exon1 c.G291A p.T97T . . . FGD5 152273 broad.mit.edu 36 3 14914163 14914163 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152536 exon5 c.G2892T p.E964D . . . PFN2 5217 broad.mit.edu 36 3 151168973 151168973 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002628 exon2 c.G187A p.G63S . . . FAM194A 131831 broad.mit.edu 36 3 151867265 151867265 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152394 exon13 c.A1727C p.K576T . . . CAPN7 23473 broad.mit.edu 36 3 15263256 15263256 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014296 exon18 c.G2024A p.C675Y . . . MBNL1 4154 broad.mit.edu 36 3 153500713 153500713 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207293 exon1 c.T41C p.L14P . . . P2RY1 5028 broad.mit.edu 36 3 154036923 154036923 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002563 exon1 c.C662T p.T221M . . . METTL6 131965 broad.mit.edu 36 3 15442993 15442993 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152396 exon2 c.G30T p.Q10H . . . EAF1 85403 broad.mit.edu 36 3 15448637 15448637 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033083 exon3 c.C238T p.R80W . . . COLQ 8292 broad.mit.edu 36 3 15504771 15504771 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005677 exon3 c.G267A p.S89S . . . HACL1 26061 broad.mit.edu 36 3 15603077 15603077 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012260 exon6 c.C418T p.R140C . . . PLCH1 23007 broad.mit.edu 36 3 156694962 156694962 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130960 exon15 c.G1897T p.A633S . . . MECOM 2122 broad.mit.edu 36 3 170323117 170323117 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105077 exon6 c.G551A p.R184H . . . LRRIQ4 344657 broad.mit.edu 36 3 171022723 171022723 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080460 exon1 c.T320C p.F107S . . . FNDC3B 64778 broad.mit.edu 36 3 173507855 173507855 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135095 exon10 c.C1070T p.A357V . . . NAALADL2 254827 broad.mit.edu 36 3 176827798 176827798 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207015 exon11 c.G1826A p.R609H . . . KCNMB2 10242 broad.mit.edu 36 3 180028698 180028698 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005832 exon5 c.C266T p.A89V . . . PIK3CA 5290 broad.mit.edu 36 3 180399570 180399570 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006218 exon2 c.G263A p.R88Q PIK3CA,central_nervous_system,brain,Substitution - Missense,0 . . ZNF639 51193 broad.mit.edu 36 3 180533958 180533958 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016331 exon7 c.C512T p.P171L . . . ABCC5 10057 broad.mit.edu 36 3 185179128 185179128 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005688 exon9 c.C1153T p.R385C . . . HTR3E 285242 broad.mit.edu 36 3 185306314 185306314 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182589 exon6 c.C833T p.A278V . . . HTR3E 285242 broad.mit.edu 36 3 185306796 185306796 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182589 exon7 c.G1157A p.G386D . . . ECE2 9718 broad.mit.edu 36 3 185477898 185477898 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014693 exon4 c.C782T p.T261I . . . THPO 7066 broad.mit.edu 36 3 185576443 185576443 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177597 exon3 c.C68T p.P23L . . . MAP3K13 9175 broad.mit.edu 36 3 186629313 186629313 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004721 exon2 c.G250A p.V84I . . . MAP3K13 9175 broad.mit.edu 36 3 186666272 186666272 + Silent SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004721 exon9 c.C1432A p.R478R . . . TBCCD1 55171 broad.mit.edu 36 3 187755413 187755413 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134415 exon5 c.C1014T p.N338N . . . AHSG 197 broad.mit.edu 36 3 187821162 187821162 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001622 exon7 c.G853A p.A285T . . . FETUB 26998 broad.mit.edu 36 3 187841139 187841139 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014375 exon1 c.C196T p.R66X . . . MASP1 5648 broad.mit.edu 36 3 188436277 188436277 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139125 exon11 c.C2076T p.C692C . . . KCNH8 131096 broad.mit.edu 36 3 19359136 19359136 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144633 exon4 c.C496T p.R166W . . . GP5 2814 broad.mit.edu 36 3 195599700 195599700 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004488 exon2 c.C601A p.L201I . . . GP5 2814 broad.mit.edu 36 3 195599847 195599847 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004488 exon2 c.G454A p.A152T . . . ACAP2 23527 broad.mit.edu 36 3 196508599 196508599 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012287 exon13 c.G1046A p.R349H . . . NCBP2 22916 broad.mit.edu 36 3 198148895 198148895 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007362 exon3 c.G282A p.A94A . . . EFHB 151651 broad.mit.edu 36 3 19899167 19899167 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144715 exon12 c.G2207A p.R736H . . . TOP2B 7155 broad.mit.edu 36 3 25640153 25640153 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001068 exon21 c.T2569C p.Y857H . . . SLC4A7 9497 broad.mit.edu 36 3 27437224 27437224 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003615 exon10 c.C1456T p.R486X . . . CRBN 51185 broad.mit.edu 36 3 3167604 3167604 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173482 exon11 c.C1271T p.T424M . . . TRIM71 131405 broad.mit.edu 36 3 32834662 32834662 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039111 exon1 c.C86T p.S29L . . . MLH1 4292 broad.mit.edu 36 3 37028566 37028566 + Missense_Mutation SNP C T T rs63750380 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000249 exon8 c.C649T p.R217C . . . LRRFIP2 9209 broad.mit.edu 36 3 37145592 37145592 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017724 exon4 c.T143C p.I48T . . . GOLGA4 2803 broad.mit.edu 36 3 37338346 37338346 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172713 exon14 c.C1732T p.R578W . . . SLC22A13 9390 broad.mit.edu 36 3 38290864 38290864 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004256 exon2 c.G476A p.C159Y . . . MYRIP 25924 broad.mit.edu 36 3 40206831 40206831 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015460 exon10 c.C1538T p.P513L . . . ENTPD3 956 broad.mit.edu 36 3 40443840 40443840 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001248 exon11 c.C1427A p.P476H . . . NKTR 4820 broad.mit.edu 36 3 42653674 42653674 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005385 exon13 c.T1474C p.S492P . . . C3orf39 84892 broad.mit.edu 36 3 43096931 43096931 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032806 exon2 c.C997T p.R333W . . . ZNF35 7584 broad.mit.edu 36 3 44675826 44675826 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003420 exon4 c.C967T p.R323W . . . LARS2 23395 broad.mit.edu 36 3 45532635 45532635 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015340 exon17 c.C1907T p.T636M . . . SLC6A20 54716 broad.mit.edu 36 3 45787822 45787822 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022405 exon5 c.G715A p.A239T . . . CCR1 1230 broad.mit.edu 36 3 46219965 46219965 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001295 exon2 c.G844A p.A282T . . . ITPR1 3708 broad.mit.edu 36 3 4687444 4687444 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099952 exon20 c.G2038A p.V680I . . . NBEAL2 23218 broad.mit.edu 36 3 47024808 47024808 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015175 exon51 c.G7751A p.R2584H . . . PTPN23 25930 broad.mit.edu 36 3 47425519 47425519 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015466 exon16 c.G1580A p.R527H . . . CSPG5 10675 broad.mit.edu 36 3 47589366 47589366 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006574 exon3 c.G1196A p.C399Y . . . DHX30 22907 broad.mit.edu 36 3 47864431 47864431 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138615 exon14 c.G2267A p.R756H . . . NME6 10201 broad.mit.edu 36 3 48311207 48311207 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005793 exon6 c.G509A p.R170H . . . PFKFB4 5210 broad.mit.edu 36 3 48548799 48548799 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004567 exon8 c.T734C p.I245T . . . QARS 5859 broad.mit.edu 36 3 49112841 49112841 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005051 exon12 c.C1031T p.A344V . . . KLHDC8B 200942 broad.mit.edu 36 3 49185335 49185335 + Silent SNP A T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173546 exon2 c.A129T p.G43G . . . BSN 8927 broad.mit.edu 36 3 49665358 49665358 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003458 exon5 c.C3365T p.S1122F . . . SEMA3B 7869 broad.mit.edu 36 3 50287306 50287306 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004636 exon13 c.G1385A p.R462Q . . . RBM15B 29890 broad.mit.edu 36 3 51405950 51405950 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013286 exon1 c.G2080A p.E694K . . . RAD54L2 23132 broad.mit.edu 36 3 51671594 51671594 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015106 exon22 c.G3522T p.E1174D . . . RRP9 9136 broad.mit.edu 36 3 51944509 51944509 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004704 exon10 c.C860A p.A287D . . . EDEM1 9695 broad.mit.edu 36 3 5218542 5218542 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014674 exon4 c.C791G p.A264G . . . NISCH 11188 broad.mit.edu 36 3 52487593 52487593 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007184 exon11 c.G1262A p.R421Q . . . NEK4 6787 broad.mit.edu 36 3 52748556 52748556 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193533 exon13 c.G1961A p.R654Q . . . ITIH1 3697 broad.mit.edu 36 3 52799959 52799959 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166434 exon18 c.C2050T p.R684W . . . TKT 7086 broad.mit.edu 36 3 53250277 53250277 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135055 exon3 c.G250A p.A84T . . . CACNA2D3 55799 broad.mit.edu 36 3 54636884 54636884 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018398 exon10 c.G994A p.A332T . . . SPATA12 353324 broad.mit.edu 36 3 57082763 57082763 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181727 exon2 c.A1G p.M1V . . . APPL1 26060 broad.mit.edu 36 3 57268942 57268942 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012096 exon17 c.C1513T p.R505X . . . ARF4 378 broad.mit.edu 36 3 57536325 57536325 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001660 exon5 c.G446A p.R149H . . . FAM116A 201627 broad.mit.edu 36 3 57594105 57594105 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152678 exon15 c.G1280A p.R427H . . . FLNB 2317 broad.mit.edu 36 3 58063033 58063033 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164317 exon9 c.G1409A p.R470Q . . . FLNB 2317 broad.mit.edu 36 3 58082140 58082140 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164317 exon20 c.G2996A p.R999Q . . . PTPRG 5793 broad.mit.edu 36 3 62229850 62229850 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002841 exon20 c.G2975A p.R992H . . . ATXN7 6314 broad.mit.edu 36 3 63940659 63940659 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177387 exon5 c.G528A p.P176P . . . MAGI1 9223 broad.mit.edu 36 3 65317548 65317548 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033057 exon23 c.G3934A p.A1312T . . . MAGI1 9223 broad.mit.edu 36 3 65439453 65439453 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015520 exon4 c.C611T p.T204M . . . KBTBD8 84541 broad.mit.edu 36 3 67137020 67137020 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032505 exon3 c.G939A p.R313R . . . LMOD3 56203 broad.mit.edu 36 3 69253963 69253963 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198271 exon1 c.C265T p.R89X . . . GXYLT2 727936 broad.mit.edu 36 3 73099443 73099443 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080393 exon6 c.C1032T p.Y344Y . . . PDZRN3 23024 broad.mit.edu 36 3 73516478 73516478 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015009 exon10 c.C1929T p.C643C . . . LMCD1 29995 broad.mit.edu 36 3 8565555 8565555 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014583 exon4 c.G689A p.G230D . . . C3orf32 51066 broad.mit.edu 36 3 8650622 8650622 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015931 exon4 c.G3A p.M1I . . . POU1F1 5449 broad.mit.edu 36 3 87405253 87405253 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122757 exon2 c.G226T p.G76X . . . BRPF1 7862 broad.mit.edu 36 3 9751020 9751020 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004634 exon2 c.C196T p.R66C . . . TTLL3 26140 broad.mit.edu 36 3 9846013 9846013 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025930 exon10 c.C1917T p.R639R . . . OR5K4 403278 broad.mit.edu 36 3 99555786 99555786 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005517 exon1 c.C399T p.H133H . . . ALCAM 214 broad.mit.edu 36 3 106748791 106748792 + Frame_Shift_Del DEL AG - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 AG AG AG - AG AG Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001627 exon10 c.1213_1214del p.405_405del . . . NKTR 4820 broad.mit.edu 36 3 42654716 42654716 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005385 exon13 c.2516delA p.E839fs . . . FRYL 285527 broad.mit.edu 36 4 48298839 48298840 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015030 exon13 c.990_991insT p.L330fs . . . TACR3 6870 broad.mit.edu 36 4 104796837 104796837 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001059 exon3 c.G851T p.C284F . . . TBCK 93627 broad.mit.edu 36 4 107334225 107334225 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163437 exon22 c.C1932T p.S644S . . . SGMS2 166929 broad.mit.edu 36 4 109040236 109040236 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136257 exon3 c.G512A p.C171Y . . . ANK2 287 broad.mit.edu 36 4 114493778 114493778 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001148 exon38 c.G4555A p.A1519T . . . ANK2 287 broad.mit.edu 36 4 114494811 114494811 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001148 exon38 c.C5588T p.T1863M . . . ANK2 287 broad.mit.edu 36 4 114495140 114495140 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001148 exon38 c.C5917T p.P1973S . . . UGT8 7368 broad.mit.edu 36 4 115764050 115764050 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128174 exon2 c.A565G p.N189D . . . NDST4 64579 broad.mit.edu 36 4 115993426 115993426 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022569 exon8 c.A1720C p.N574H . . . C4orf3 401152 broad.mit.edu 36 4 120441034 120441034 + Silent SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170330 exon2 c.G504T p.G168G . . . ANXA5 308 broad.mit.edu 36 4 122825322 122825322 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001154 exon4 c.G149A p.R50H . . . KIAA1109 84162 broad.mit.edu 36 4 123427190 123427190 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015312 exon51 c.C9082T p.R3028C . . . KIAA1109 84162 broad.mit.edu 36 4 123485073 123485073 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015312 exon72 c.C12640T p.R4214W . . . ADAD1 132612 broad.mit.edu 36 4 123548576 123548576 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139243 exon8 c.C788T p.P263L . . . FAT4 79633 broad.mit.edu 36 4 126458378 126458378 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon1 c.G1362A p.A454A . . . FAT4 79633 broad.mit.edu 36 4 126586965 126586965 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon8 c.G7261A p.A2421T . . . FAT4 79633 broad.mit.edu 36 4 126609150 126609150 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon11 c.A11933G p.Y3978C . . . SCLT1 132320 broad.mit.edu 36 4 130110983 130110983 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144643 exon10 c.G777T p.K259N . . . BOD1L 259282 broad.mit.edu 36 4 13210599 13210599 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148894 exon10 c.C7023T p.S2341S . . . PCDH10 57575 broad.mit.edu 36 4 134292128 134292128 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032961 exon1 c.G1383A p.P461P . . . POU4F2 5458 broad.mit.edu 36 4 147781206 147781206 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004575 exon2 c.C1026T p.G342G . . . CC2D2A 57545 broad.mit.edu 36 4 15126656 15126656 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080522 exon11 c.C948T p.T316T . . . PET112L 5188 broad.mit.edu 36 4 152848679 152848679 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004564 exon6 c.A788G p.N263S . . . KIAA0922 23240 broad.mit.edu 36 4 154733114 154733114 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015196 exon18 c.C1847T p.P616L . . . DCHS2 54798 broad.mit.edu 36 4 155376141 155376141 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017639 exon25 c.C7748T p.A2583V . . . DCHS2 54798 broad.mit.edu 36 4 155472255 155472255 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017639 exon10 c.A2295G p.T765T . . . PROM1 8842 broad.mit.edu 36 4 15619726 15619726 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145849 exon11 c.C1245A p.N415K PROM1,kidney,NS,Substitution - coding silent,0 . . RAPGEF2 9693 broad.mit.edu 36 4 160472266 160472266 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014247 exon9 c.C1127T p.A376V . . . RAPGEF2 9693 broad.mit.edu 36 4 160490878 160490878 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014247 exon20 c.T3369C p.S1123S . . . RAPGEF2 9693 broad.mit.edu 36 4 160494189 160494189 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014247 exon22 c.G3709A p.A1237T . . . KLHL2 11275 broad.mit.edu 36 4 166451261 166451261 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161521 exon10 c.C1158T p.S386S . . . C4orf27 54969 broad.mit.edu 36 4 170899822 170899822 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017867 exon5 c.C509T p.T170M . . . NCAPG 64151 broad.mit.edu 36 4 17425619 17425619 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022346 exon4 c.G590A p.R197Q . . . WDR17 116966 broad.mit.edu 36 4 177319094 177319094 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181265 exon20 c.C2697T p.S899S . . . ASB5 140458 broad.mit.edu 36 4 177375140 177375140 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080874 exon6 c.A685C p.K229Q . . . AGA 175 broad.mit.edu 36 4 178592592 178592592 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171988 exon7 c.C714T p.D238D . . . ODZ3 55714 broad.mit.edu 36 4 183912629 183912629 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080477 exon21 c.G4115A p.R1372H . . . IRF2 3660 broad.mit.edu 36 4 185587147 185587147 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002199 exon2 c.G66A p.P22P . . . LRP2BP 55805 broad.mit.edu 36 4 186528958 186528958 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018409 exon7 c.G808A p.A270T . . . SORBS2 8470 broad.mit.edu 36 4 186820253 186820253 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145672 exon5 c.C300T p.L100L . . . FAT1 2195 broad.mit.edu 36 4 187761646 187761646 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005245 exon19 c.C11028T p.N3676N . . . FAT1 2195 broad.mit.edu 36 4 187777368 187777368 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005245 exon10 c.G7366A p.A2456T . . . FAT1 2195 broad.mit.edu 36 4 187777867 187777867 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005245 exon10 c.G6867A p.A2289A . . . WHSC1 7468 broad.mit.edu 36 4 1911238 1911238 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133331 exon10 c.G1816A p.A606T . . . PPARGC1A 10891 broad.mit.edu 36 4 23442375 23442375 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013261 exon3 c.C332T p.A111V . . . NOP14 8602 broad.mit.edu 36 4 2929210 2929210 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003703 exon2 c.G251T p.R84I . . . HTT 3064 broad.mit.edu 36 4 3200413 3200413 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002111 exon59 c.G7988A p.R2663Q . . . HTT 3064 broad.mit.edu 36 4 3210122 3210122 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002111 exon65 c.C9042T p.T3014T . . . C4orf44 345222 broad.mit.edu 36 4 3224894 3224894 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042690 exon2 c.G483A p.S161S . . . RGS12 6002 broad.mit.edu 36 4 3288381 3288381 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002926 exon2 c.C686T p.A229V . . . HGFAC 3083 broad.mit.edu 36 4 3415856 3415856 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001528 exon6 c.C619A p.R207S . . . LRPAP1 4043 broad.mit.edu 36 4 3491679 3491679 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002337 exon3 c.C389T p.A130V . . . ZNF141 7700 broad.mit.edu 36 4 357516 357516 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003441 exon4 c.A1290C p.K430N . . . TBC1D1 23216 broad.mit.edu 36 4 37793842 37793842 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015173 exon16 c.G2674T p.G892C . . . WDR19 57728 broad.mit.edu 36 4 38894115 38894115 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025132 exon12 c.T1139A p.L380Q . . . WDR19 57728 broad.mit.edu 36 4 38956174 38956174 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025132 exon35 c.C3869T p.T1290M . . . KLB 152831 broad.mit.edu 36 4 39126572 39126572 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175737 exon5 c.T3006C p.C1002C . . . PHOX2B 8929 broad.mit.edu 36 4 41444146 41444146 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003924 exon2 c.G406A p.D136N . . . LYAR 55646 broad.mit.edu 36 4 4334503 4334503 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145725 exon4 c.G145A p.V49M . . . ZBTB49 166793 broad.mit.edu 36 4 4354845 4354845 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145291 exon3 c.C381T p.G127G . . . KCTD8 386617 broad.mit.edu 36 4 43871891 43871891 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198353 exon2 c.G1095T p.E365D . . . STK32B 55351 broad.mit.edu 36 4 5192559 5192559 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018401 exon2 c.C79T p.R27W . . . LRRC66 339977 broad.mit.edu 36 4 52556691 52556691 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024611 exon4 c.C1254T p.N418N . . . CLOCK 9575 broad.mit.edu 36 4 55999306 55999306 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004898 exon22 c.C2261T p.T754M . . . KIAA1211 57482 broad.mit.edu 36 4 56874129 56874129 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020722 exon7 c.G364A p.V122I . . . KIAA1211 57482 broad.mit.edu 36 4 56876225 56876225 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020722 exon8 c.C1800T p.G600G . . . KIAA1211 57482 broad.mit.edu 36 4 56876612 56876612 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020722 exon8 c.C2187T p.S729S . . . KIAA1211 57482 broad.mit.edu 36 4 56877597 56877597 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020722 exon8 c.G3172A p.E1058K . . . REST 5978 broad.mit.edu 36 4 57472219 57472219 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193508 exon2 c.C658T p.R220C . . . C4orf14 84273 broad.mit.edu 36 4 57524540 57524540 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032313 exon7 c.C1930T p.R644X . . . EVC 2121 broad.mit.edu 36 4 5806541 5806541 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153717 exon10 c.G1444T p.D482Y . . . PDE6B 5158 broad.mit.edu 36 4 650333 650333 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145292 exon18 c.G1445A p.R482Q . . . EPHA5 2044 broad.mit.edu 36 4 65952699 65952699 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004439 exon8 c.T1778C p.L593P . . . GNRHR 2798 broad.mit.edu 36 4 68288873 68288873 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000406 exon3 c.C907A p.P303T . . . UGT2B11 10720 broad.mit.edu 36 4 70114529 70114529 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001073 exon1 c.G501A p.R167R . . . UGT2A1 10941 broad.mit.edu 36 4 70489852 70489852 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006798 exon6 c.G1411A p.A471T . . . CSN3 1448 broad.mit.edu 36 4 71149502 71149502 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005212 exon4 c.C286T p.R96W . . . ENAM 10117 broad.mit.edu 36 4 71728249 71728249 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031889 exon9 c.G2242A p.V748I . . . ENAM 10117 broad.mit.edu 36 4 71728743 71728743 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031889 exon9 c.C2736T p.D912D . . . NPFFR2 10886 broad.mit.edu 36 4 73116599 73116599 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004885 exon1 c.C117T p.R39R . . . NPFFR2 10886 broad.mit.edu 36 4 73231749 73231749 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144756 exon5 c.C628T p.R210W . . . RASSF6 166824 broad.mit.edu 36 4 74669779 74669779 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177532 exon6 c.A549G p.G183G . . . BTC 685 broad.mit.edu 36 4 75900190 75900190 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001729 exon3 c.C184T p.R62W . . . CCDC158 339965 broad.mit.edu 36 4 77466168 77466168 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042784 exon22 c.C3023T p.A1008V . . . SHROOM3 57619 broad.mit.edu 36 4 77910922 77910922 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020859 exon10 c.C5469T p.S1823S . . . BMP2K 55589 broad.mit.edu 36 4 80052124 80052124 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198892 exon16 c.G3399A p.V1133V . . . ABLIM2 84448 broad.mit.edu 36 4 8037517 8037517 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130083 exon18 c.G1684A p.A562T . . . RASGEF1B 153020 broad.mit.edu 36 4 82596921 82596921 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152545 exon4 c.G346A p.E116K . . . SEC31A 22872 broad.mit.edu 36 4 83982489 83982489 + Silent SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001191049 exon21 c.C2781A p.A927A . . . HPSE 10855 broad.mit.edu 36 4 84449058 84449058 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098540 exon8 c.C1055T p.A352V . . . CDS1 1040 broad.mit.edu 36 4 85759697 85759697 + Silent SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001263 exon5 c.C567A p.A189A . . . WDFY3 23001 broad.mit.edu 36 4 85819403 85819403 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014991 exon65 c.C9840T p.D3280D . . . GAK 2580 broad.mit.edu 36 4 861523 861523 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005255 exon16 c.C1736T p.A579V . . . PTPN13 5783 broad.mit.edu 36 4 87872825 87872825 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080684 exon12 c.C1740T p.N580N . . . HERC6 55008 broad.mit.edu 36 4 89557639 89557639 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017912 exon13 c.C1597T p.R533C . . . HERC5 51191 broad.mit.edu 36 4 89627269 89627269 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016323 exon15 c.C1878T p.C626C . . . WDR1 9948 broad.mit.edu 36 4 9714647 9714647 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017491 exon3 c.C200T p.A67V . . . BBS12 166379 broad.mit.edu 36 4 123884172 123884172 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178007 exon3 c.1675delA p.K559fs . . . UGDH 7358 broad.mit.edu 36 4 39192148 39192148 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184700 exon3 c.214delT p.S72fs . . . PDGFRA 5156 broad.mit.edu 36 4 54824847 54824847 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006206 exon4 c.624delA p.L208fs . . . PAM 5066 broad.mit.edu 36 5 102323605 102323605 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138822 exon12 c.G1033A p.A345T . . . CMBL 134147 broad.mit.edu 36 5 10343710 10343710 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138809 exon2 c.G165A p.Q55Q . . . ROPN1L 83853 broad.mit.edu 36 5 10501383 10501383 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031916 exon2 c.C143A p.A48D . . . CAMK4 814 broad.mit.edu 36 5 110842079 110842079 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001744 exon9 c.A803G p.E268G . . . SLC12A7 10723 broad.mit.edu 36 5 1110717 1110717 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006598 exon22 c.A2895G p.A965A . . . CTNND2 1501 broad.mit.edu 36 5 11170571 11170571 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001332 exon13 c.C2268T p.I756I . . . APC 324 broad.mit.edu 36 5 112182670 112182670 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127511 exon8 c.C988T p.R330X . . . APC 324 broad.mit.edu 36 5 112192515 112192515 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127511 exon12 c.C1636T p.R546X APC,large_intestine,NS,Substitution - Nonsense,0 . . APC 324 broad.mit.edu 36 5 112203386 112203386 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127511 exon14 c.G4142A p.R1381H . . . APC 324 broad.mit.edu 36 5 112203538 112203538 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127511 exon14 c.C4294T p.R1432X APC,large_intestine,rectum,Substitution - Nonsense,0 . . DCP2 167227 broad.mit.edu 36 5 112364764 112364764 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152624 exon5 c.C517T p.R173C . . . SEMA6A 57556 broad.mit.edu 36 5 115843785 115843785 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020796 exon12 c.G1182A p.T394T . . . DMXL1 1657 broad.mit.edu 36 5 118541058 118541058 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005509 exon27 c.C6866T p.T2289M . . . HSD17B4 3295 broad.mit.edu 36 5 118894905 118894905 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000414 exon22 c.C1900T p.R634C . . . FBN2 2201 broad.mit.edu 36 5 127665013 127665013 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001999 exon47 c.C6006T p.N2002N . . . FBN2 2201 broad.mit.edu 36 5 127707978 127707978 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001999 exon25 c.C3341T p.T1114M . . . IL13 3596 broad.mit.edu 36 5 132021785 132021785 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002188 exon1 c.C8T p.P3L . . . TCF7 6932 broad.mit.edu 36 5 133502605 133502605 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003202 exon5 c.G612A p.G204G . . . KLHL3 26249 broad.mit.edu 36 5 137041163 137041163 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017415 exon6 c.C606T p.S202S . . . DNAH5 1767 broad.mit.edu 36 5 13774176 13774176 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon71 c.G12212A p.R4071H . . . ETF1 2107 broad.mit.edu 36 5 137875094 137875094 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004730 exon7 c.C831T p.N277N . . . HSPA9 3313 broad.mit.edu 36 5 137925176 137925176 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004134 exon10 c.A1174G p.M392V . . . DNAH5 1767 broad.mit.edu 36 5 13823875 13823875 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon56 c.G9588A p.V3196V . . . CTNNA1 1495 broad.mit.edu 36 5 138288877 138288877 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001903 exon13 c.C1781T p.A594V . . . CTNNA1 1495 broad.mit.edu 36 5 138296212 138296212 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001903 exon17 c.G2345A p.R782H . . . DNAH5 1767 broad.mit.edu 36 5 13921029 13921029 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon25 c.C3907T p.H1303Y . . . APBB3 10307 broad.mit.edu 36 5 139920805 139920805 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133174 exon9 c.C892T p.P298S . . . PCDHA1 56147 broad.mit.edu 36 5 140147614 140147614 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031410 exon1 c.G1555A p.A519T . . . PCDHA3 56145 broad.mit.edu 36 5 140162405 140162405 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031497 exon1 c.G1439A p.R480Q . . . PCDHA4 56144 broad.mit.edu 36 5 140167452 140167452 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031500 exon1 c.G496A p.A166T . . . PCDHA6 56142 broad.mit.edu 36 5 140188045 140188045 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018909 exon1 c.G185A p.R62H . . . PCDHA8 56140 broad.mit.edu 36 5 140203287 140203287 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031856 exon1 c.C2197T p.R733W . . . PCDHA9 9752 broad.mit.edu 36 5 140209325 140209325 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014005 exon1 c.C1061T p.T354M . . . PCDHA11 56138 broad.mit.edu 36 5 140229961 140229961 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031861 exon1 c.G1089T p.Q363H . . . PCDHA13 56136 broad.mit.edu 36 5 140242581 140242581 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031865 exon1 c.G544A p.A182T . . . PCDHB4 56131 broad.mit.edu 36 5 140483138 140483138 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018938 exon1 c.C1374T p.F458F . . . PCDHB6 56130 broad.mit.edu 36 5 140510838 140510838 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018939 exon1 c.G816A p.S272S . . . PCDHB6 56130 broad.mit.edu 36 5 140511659 140511659 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018939 exon1 c.G1637A p.R546H . . . PCDHGA3 56112 broad.mit.edu 36 5 140705936 140705936 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018916 exon1 c.C2152T p.R718C . . . PCDHGB1 56104 broad.mit.edu 36 5 140711737 140711737 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018922 exon1 c.C1726T p.R576C . . . PCDHGA4 56111 broad.mit.edu 36 5 140715189 140715189 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018917 exon1 c.C238T p.R80C . . . PCDHGA6 56109 broad.mit.edu 36 5 140735042 140735042 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032086 exon1 c.G1208A p.R403Q . . . PCDHGB5 56101 broad.mit.edu 36 5 140758761 140758761 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032099 exon1 c.G883A p.G295R . . . PCDHGA9 56107 broad.mit.edu 36 5 140762888 140762888 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018921 exon1 c.G185A p.R62H . . . PCDHGB7 56099 broad.mit.edu 36 5 140778472 140778472 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032101 exon1 c.G862A p.A288T . . . PCDHGB7 56099 broad.mit.edu 36 5 140779499 140779499 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032101 exon1 c.G1889A p.R630H . . . PCDHGA11 56105 broad.mit.edu 36 5 140781538 140781538 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018914 exon1 c.C560T p.T187M . . . PCDHGC5 56097 broad.mit.edu 36 5 140851027 140851027 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018929 exon1 c.A2036G p.D679G . . . FCHSD1 89848 broad.mit.edu 36 5 141007169 141007169 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033449 exon9 c.G808A p.G270R . . . ARAP3 64411 broad.mit.edu 36 5 141039977 141039977 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022481 exon2 c.G261A p.P87P . . . PCDH12 51294 broad.mit.edu 36 5 141315344 141315344 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016580 exon1 c.C2257T p.R753W . . . YIPF5 81555 broad.mit.edu 36 5 143523911 143523911 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030799 exon4 c.G386A p.G129D . . . TRIO 7204 broad.mit.edu 36 5 14417857 14417857 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007118 exon15 c.G2686A p.A896T . . . TRIO 7204 broad.mit.edu 36 5 14535709 14535709 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007118 exon46 c.G6484A p.G2162S . . . RBM27 54439 broad.mit.edu 36 5 145644381 145644381 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018989 exon20 c.G2992A p.A998T . . . JAKMIP2 9832 broad.mit.edu 36 5 147021145 147021145 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014790 exon3 c.G186A p.E62E . . . SH3TC2 79628 broad.mit.edu 36 5 148386785 148386785 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024577 exon11 c.G2703T p.Q901H . . . SH3TC2 79628 broad.mit.edu 36 5 148407632 148407632 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024577 exon3 c.C265T p.R89C . . . PCYOX1L 78991 broad.mit.edu 36 5 148728304 148728304 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024028 exon6 c.C1379T p.A460V . . . CSNK1A1 1452 broad.mit.edu 36 5 148866795 148866795 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001892 exon8 c.G845A p.R282H . . . ARHGEF37 389337 broad.mit.edu 36 5 148981573 148981573 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001669 exon9 c.C1090T p.R364C . . . ARHGEF37 389337 broad.mit.edu 36 5 148983783 148983783 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001669 exon10 c.G1351A p.V451I . . . ARHGEF37 389337 broad.mit.edu 36 5 148988585 148988585 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001669 exon12 c.G1681A p.A561T . . . PDGFRB 5159 broad.mit.edu 36 5 149477454 149477454 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002609 exon22 c.C3057T p.N1019N . . . RBM22 55696 broad.mit.edu 36 5 150058288 150058288 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018047 exon4 c.T237C p.N79N . . . ANXA6 309 broad.mit.edu 36 5 150491002 150491002 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001155 exon11 c.C778A p.L260I . . . GM2A 2760 broad.mit.edu 36 5 150613007 150613007 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167607 exon1 c.C37A p.L13M . . . FAT2 2196 broad.mit.edu 36 5 150891391 150891391 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001447 exon13 c.G9761A p.R3254H . . . FAT2 2196 broad.mit.edu 36 5 150903968 150903968 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001447 exon9 c.C6913T p.R2305C . . . FAT2 2196 broad.mit.edu 36 5 150905231 150905231 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001447 exon9 c.C5650T p.P1884S . . . G3BP1 10146 broad.mit.edu 36 5 151163724 151163724 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005754 exon12 c.G1280A p.R427H . . . KIF4B 285643 broad.mit.edu 36 5 154374305 154374305 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099293 exon1 c.C693T p.S231S . . . CYFIP2 26999 broad.mit.edu 36 5 156693027 156693027 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037333 exon21 c.A2380G p.I794V . . . ADAM19 8728 broad.mit.edu 36 5 156879519 156879519 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033274 exon6 c.C506T p.P169L . . . SOX30 11063 broad.mit.edu 36 5 156998162 156998162 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178424 exon4 c.C1534T p.R512C . . . SOX30 11063 broad.mit.edu 36 5 157006339 157006339 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007017 exon3 c.T1271C p.F424S . . . SOX30 11063 broad.mit.edu 36 5 157011151 157011151 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007017 exon1 c.G514A p.G172R . . . GABRB2 2561 broad.mit.edu 36 5 160685954 160685954 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021911 exon10 c.C1190T p.T397M . . . GABRA6 2559 broad.mit.edu 36 5 161049793 161049793 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000811 exon7 c.G682A p.V228I . . . ODZ2 57451 broad.mit.edu 36 5 167607858 167607858 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122679 exon27 c.A7309G p.K2437E . . . DOCK2 1794 broad.mit.edu 36 5 169048850 169048850 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004946 exon9 c.C778T p.R260X . . . FBXW11 23291 broad.mit.edu 36 5 171270190 171270190 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033645 exon2 c.G262A p.A88T . . . NKX2-5 1482 broad.mit.edu 36 5 172592668 172592668 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004387 exon2 c.A485G p.Y162C . . . FAF2 23197 broad.mit.edu 36 5 175853634 175853634 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014613 exon6 c.G512A p.R171H . . . TSPAN17 26262 broad.mit.edu 36 5 176016412 176016412 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006616 exon7 c.G736A p.A246T . . . HK3 3101 broad.mit.edu 36 5 176247133 176247133 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002115 exon11 c.G1525T p.A509S . . . DDX41 51428 broad.mit.edu 36 5 176871527 176871527 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016222 exon17 c.C1740T p.R580R . . . FAM193B 54540 broad.mit.edu 36 5 176895994 176895994 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190946 exon4 c.G1047A p.P349P . . . COL23A1 91522 broad.mit.edu 36 5 177647945 177647945 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173465 exon5 c.C427T p.R143X . . . ZNF354B 117608 broad.mit.edu 36 5 178242814 178242814 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058230 exon5 c.G755A p.S252N . . . ZNF354C 30832 broad.mit.edu 36 5 178438437 178438437 + Missense_Mutation SNP A G G rs57271258 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014594 exon5 c.A398G p.E133G . . . ZNF354C 30832 broad.mit.edu 36 5 178439046 178439046 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014594 exon5 c.C1007T p.A336V . . . ADAMTS2 9509 broad.mit.edu 36 5 178495548 178495548 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014244 exon13 c.G2053A p.A685T . . . MGAT4B 11282 broad.mit.edu 36 5 179158567 179158567 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014275 exon11 c.G1310A p.R437H . . . FLT4 2324 broad.mit.edu 36 5 179973723 179973723 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182925 exon24 c.G3282C p.Q1094H . . . PRDM9 56979 broad.mit.edu 36 5 23563343 23563343 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020227 exon11 c.A2389G p.T797A . . . CDH10 1008 broad.mit.edu 36 5 24547365 24547365 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006727 exon6 c.G830A p.R277Q . . . CDH9 1007 broad.mit.edu 36 5 26917037 26917037 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016279 exon12 c.G2335A p.D779N . . . SDHA 6389 broad.mit.edu 36 5 304567 304567 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004168 exon13 c.C1778T p.A593V . . . SDHA 6389 broad.mit.edu 36 5 309514 309514 + Silent SNP G C C rs1042446 byFrequency TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_004168 exon15 c.G1974C p.P658P . . . CDH6 1004 broad.mit.edu 36 5 31358882 31358882 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004932 exon12 c.G2083A p.E695K . . . DROSHA 29102 broad.mit.edu 36 5 31507928 31507928 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013235 exon16 c.C2240T p.T747M . . . PDZD2 23037 broad.mit.edu 36 5 32073127 32073127 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178140 exon6 c.G1441A p.G481S . . . PDZD2 23037 broad.mit.edu 36 5 32126157 32126157 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178140 exon19 c.G6846A p.P2282P . . . GOLPH3 64083 broad.mit.edu 36 5 32162268 32162268 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022130 exon4 c.G704A p.R235H . . . PDCD6 10016 broad.mit.edu 36 5 364467 364467 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013232 exon5 c.C427T p.R143W . . . SLC1A3 6507 broad.mit.edu 36 5 36712806 36712806 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166695 exon5 c.C623T p.T208M . . . NIPBL 25836 broad.mit.edu 36 5 37088266 37088266 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015384 exon42 c.A7104G p.Q2368Q . . . OSMR 9180 broad.mit.edu 36 5 38940282 38940282 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003999 exon9 c.C1205T p.A402V . . . HMGCS1 3157 broad.mit.edu 36 5 43331687 43331687 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002130 exon5 c.C829T p.R277W . . . NNT 23530 broad.mit.edu 36 5 43691832 43691832 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182977 exon15 c.G2193A p.T731T . . . HCN1 348980 broad.mit.edu 36 5 45298544 45298544 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021072 exon8 c.G1909A p.A637T . . . HCN1 348980 broad.mit.edu 36 5 45497810 45497810 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021072 exon3 c.C906T p.I302I . . . ITGA2 3673 broad.mit.edu 36 5 52392622 52392622 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002203 exon12 c.C1447T p.R483X . . . SLC9A3 6550 broad.mit.edu 36 5 530552 530552 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004174 exon11 c.G1655A p.R552H . . . SNX18 112574 broad.mit.edu 36 5 53850784 53850784 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145427 exon1 c.C1245T p.P415P . . . PPAP2A 8611 broad.mit.edu 36 5 54756905 54756905 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176895 exon6 c.G744A p.S248S . . . SLC38A9 153129 broad.mit.edu 36 5 55004267 55004267 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173514 exon4 c.G127A p.E43K . . . KIAA0947 23379 broad.mit.edu 36 5 5514142 5514142 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015325 exon13 c.G1695A p.K565K . . . MAP3K1 4214 broad.mit.edu 36 5 56213401 56213401 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005921 exon14 c.G2617A p.V873I . . . ACTBL2 345651 broad.mit.edu 36 5 56814180 56814180 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017992 exon1 c.C112T p.R38C . . . ERCC8 1161 broad.mit.edu 36 5 60249954 60249954 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000082 exon4 c.C294T p.H98H . . . ADAMTS6 11174 broad.mit.edu 36 5 64594514 64594514 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_197941 exon13 c.G1652A p.G551D . . . ERBB2IP 55914 broad.mit.edu 36 5 65357085 65357085 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018695 exon11 c.C839T p.T280M . . . SREK1 140890 broad.mit.edu 36 5 65509166 65509166 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139168 exon12 c.G1301A p.R434H . . . MAST4 375449 broad.mit.edu 36 5 66461811 66461811 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015183 exon14 c.G1196A p.R399Q . . . RAD17 5884 broad.mit.edu 36 5 68727984 68727984 + Missense_Mutation SNP G A A rs17236478 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133341 exon13 c.G1169A p.R390H . . . FAM169A 26049 broad.mit.edu 36 5 74136118 74136118 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015566 exon8 c.G868A p.E290K . . . COL4A3BP 10087 broad.mit.edu 36 5 74717543 74717543 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130105 exon14 c.G1741A p.V581I . . . POLK 51426 broad.mit.edu 36 5 74900952 74900952 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016218 exon4 c.G287T p.S96I . . . OTP 23440 broad.mit.edu 36 5 76968437 76968437 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032109 exon2 c.G412A p.A138T . . . DMGDH 29958 broad.mit.edu 36 5 78376091 78376091 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013391 exon6 c.A786C p.E262D . . . JMY 133746 broad.mit.edu 36 5 78631745 78631745 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152405 exon5 c.G1541A p.R514Q . . . RPS23 6228 broad.mit.edu 36 5 81608025 81608025 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025 exon3 c.G233A p.G78D . . . MEF2C 4208 broad.mit.edu 36 5 88136220 88136220 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193350 exon3 c.C209T p.T70M . . . GPR98 84059 broad.mit.edu 36 5 89959204 89959204 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032119 exon7 c.G1093T p.D365Y . . . GPR98 84059 broad.mit.edu 36 5 89960393 89960393 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032119 exon8 c.C1497T p.S499S . . . GPR98 84059 broad.mit.edu 36 5 89975485 89975485 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032119 exon14 c.G2663A p.G888D . . . CHD1 1105 broad.mit.edu 36 5 98240042 98240042 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001270 exon23 c.C3358T p.R1120W . . . FAM173B 134145 broad.mit.edu 36 5 10280605 10280605 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199133 exon5 c.650delG p.R217fs . . . H2AFY 9555 broad.mit.edu 36 5 134733184 134733184 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004893 exon4 c.288delA p.K96fs . . . SPINK7 84651 broad.mit.edu 36 5 147673149 147673149 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032566 exon2 c.81delA p.P27fs . . . MIER3 166968 broad.mit.edu 36 5 56255513 56255518 + In_Frame_Del DEL ATGGTT - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 ATGGTT ATGGTT Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152622 exon11 c.1030_1035del p.344_345del . . . AP3B1 8546 broad.mit.edu 36 5 77370663 77370663 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003664 exon23 c.2769delA p.K923fs . . . FLJ33360 401172 broad.mit.edu 36 5 6390303 6390303 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . CCNC 892 broad.mit.edu 36 6 100115990 100115990 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005190 exon4 c.T268C p.C90R . . . C6orf203 51250 broad.mit.edu 36 6 107468084 107468084 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142470 exon3 c.C442T p.R148W . . . BEND3 57673 broad.mit.edu 36 6 107496796 107496796 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080450 exon5 c.C2292T p.S764S . . . BEND3 57673 broad.mit.edu 36 6 107526588 107526588 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080450 exon4 c.G100A p.V34M . . . MICAL1 64780 broad.mit.edu 36 6 109876699 109876699 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159291 exon11 c.C1335T p.S445S . . . MICAL1 64780 broad.mit.edu 36 6 109881715 109881715 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159291 exon3 c.C285T p.C95C . . . ZBTB24 9841 broad.mit.edu 36 6 109904821 109904821 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014797 exon3 c.C958T p.R320X . . . FIG4 9896 broad.mit.edu 36 6 110163194 110163194 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014845 exon6 c.G646A p.G216R . . . CDK19 23097 broad.mit.edu 36 6 111054927 111054927 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015076 exon7 c.G761A p.R254Q . . . REV3L 5980 broad.mit.edu 36 6 111801032 111801032 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002912 exon13 c.G5219A p.R1740H . . . FYN 2534 broad.mit.edu 36 6 112147888 112147888 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002037 exon4 c.C60T p.G20G . . . ROS1 6098 broad.mit.edu 36 6 117813574 117813574 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002944 exon15 c.G2269A p.G757S . . . MCM9 254394 broad.mit.edu 36 6 119286772 119286772 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153255 exon3 c.T524C p.L175S . . . FAM184A 79632 broad.mit.edu 36 6 119337352 119337352 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024581 exon14 c.G2855A p.R952Q . . . GJA1 2697 broad.mit.edu 36 6 121810777 121810777 + Missense_Mutation SNP G A A rs2227885 byFrequency TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_000165 exon2 c.G1085A p.R362Q . . . CLVS2 134829 broad.mit.edu 36 6 123360787 123360787 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010852 exon2 c.C166T p.R56C . . . NKAIN2 154215 broad.mit.edu 36 6 124167070 124167070 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153355 exon1 c.C26T p.T9M . . . C6orf174 387104 broad.mit.edu 36 6 127839173 127839173 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012279 exon6 c.A1691T p.Y564F . . . LAMA2 3908 broad.mit.edu 36 6 129678879 129678879 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079823 exon27 c.G3928A p.E1310K . . . TAAR5 9038 broad.mit.edu 36 6 132952356 132952356 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003967 exon1 c.G163A p.V55M . . . VNN2 8875 broad.mit.edu 36 6 133112545 133112545 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004665 exon6 c.G1353A p.L451L . . . C6orf192 116843 broad.mit.edu 36 6 133159908 133159908 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052831 exon2 c.C89T p.S30L . . . TBC1D7 51256 broad.mit.edu 36 6 13429172 13429172 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143965 exon4 c.C328T p.R110C . . . SGK1 6446 broad.mit.edu 36 6 134624787 134624787 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143676 exon2 c.T262G p.W88G . . . MYB 4602 broad.mit.edu 36 6 135555298 135555298 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161657 exon6 c.C671T p.A224V . . . KIAA1244 57221 broad.mit.edu 36 6 138601389 138601389 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020340 exon6 c.T471C p.T157T . . . KIAA1244 57221 broad.mit.edu 36 6 138656898 138656898 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020340 exon20 c.G3444A p.S1148S . . . REPS1 85021 broad.mit.edu 36 6 139308129 139308129 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031922 exon4 c.G548A p.R183H . . . C6orf115 58527 broad.mit.edu 36 6 139405590 139405590 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021243 exon3 c.C103T p.R35C . . . GPR126 57211 broad.mit.edu 36 6 142782818 142782818 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001032394 exon21 c.G3119A p.R1040H . . . HIVEP2 3097 broad.mit.edu 36 6 143133276 143133276 + Silent SNP G A A rs34191067 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006734 exon5 c.C4293T p.S1431S . . . UTRN 7402 broad.mit.edu 36 6 145198713 145198713 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007124 exon69 c.G9770T p.R3257M . . . PPIL4 85313 broad.mit.edu 36 6 149898500 149898500 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139126 exon5 c.C389T p.T130I . . . MTHFD1L 25902 broad.mit.edu 36 6 151307378 151307378 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015440 exon14 c.G1504A p.A502T . . . AKAP12 9590 broad.mit.edu 36 6 151711668 151711668 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005100 exon4 c.C449A p.P150H . . . AKAP12 9590 broad.mit.edu 36 6 151713372 151713372 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005100 exon4 c.G2153A p.G718E . . . ZBTB2 57621 broad.mit.edu 36 6 151736385 151736385 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020861 exon2 c.G81A p.T27T . . . C6orf97 80129 broad.mit.edu 36 6 151978288 151978288 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025059 exon10 c.G1728T p.Q576H . . . SYNE1 23345 broad.mit.edu 36 6 152656533 152656533 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015293 exon10 c.G1467A p.Q489Q . . . RBM16 22828 broad.mit.edu 36 6 155168258 155168258 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014892 exon9 c.G927A p.Q309Q . . . ARID1B 57492 broad.mit.edu 36 6 157529990 157529990 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017519 exon9 c.G2965A p.A989T . . . ARID1B 57492 broad.mit.edu 36 6 157566752 157566752 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017519 exon18 c.C4916T p.T1639M . . . SNX9 51429 broad.mit.edu 36 6 158283827 158283827 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016224 exon18 c.G1757T p.R586M . . . TULP4 56995 broad.mit.edu 36 6 158844430 158844430 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020245 exon13 c.G3747A p.T1249T . . . FNDC1 84624 broad.mit.edu 36 6 159573252 159573252 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032532 exon11 c.G1718A p.G573D . . . IGF2R 3482 broad.mit.edu 36 6 160410964 160410964 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000876 exon31 c.G4327A p.G1443R . . . MAP3K4 4216 broad.mit.edu 36 6 161450864 161450864 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006724 exon22 c.C4174T p.L1392L . . . AGPAT4 56895 broad.mit.edu 36 6 161494398 161494398 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020133 exon5 c.G634A p.A212T . . . PDE10A 10846 broad.mit.edu 36 6 165782413 165782413 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006661 exon6 c.G359A p.C120Y . . . RPS6KA2 6196 broad.mit.edu 36 6 166746314 166746314 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021135 exon21 c.C2128T p.R710W . . . RNASET2 8635 broad.mit.edu 36 6 167272439 167272439 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003730 exon6 c.C380T p.A127V . . . FAM120B 84498 broad.mit.edu 36 6 170542108 170542108 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032448 exon8 c.G2573A p.R858Q . . . CAP2 10486 broad.mit.edu 36 6 17534881 17534881 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006366 exon3 c.C203T p.A68V . . . SLC17A3 10786 broad.mit.edu 36 6 25963369 25963369 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098486 exon6 c.T694G p.F232V . . . SLC17A2 10246 broad.mit.edu 36 6 26021532 26021532 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005835 exon11 c.C1281T p.P427P . . . HIST1H3D 8351 broad.mit.edu 36 6 26305259 26305259 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003530 exon2 c.C199T p.P67S . . . OR2B6 26212 broad.mit.edu 36 6 28033431 28033431 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012367 exon1 c.C434T p.A145V . . . NKAPL 222698 broad.mit.edu 36 6 28335178 28335178 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007531 exon1 c.G50A p.R17Q . . . NKAPL 222698 broad.mit.edu 36 6 28335421 28335421 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007531 exon1 c.G293A p.R98H . . . NKAPL 222698 broad.mit.edu 36 6 28336168 28336168 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007531 exon1 c.G1040A p.R347H . . . ABCF1 23 broad.mit.edu 36 6 30662240 30662240 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025091 exon19 c.C1896T p.F632F . . . DDR1 780 broad.mit.edu 36 6 30965152 30965152 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013993 exon5 c.G383A p.R128H . . . CDSN 1041 broad.mit.edu 36 6 31193233 31193233 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001264 exon2 c.G138A p.T46T . . . TCF19 6941 broad.mit.edu 36 6 31238299 31238299 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077511 exon4 c.C864T p.G288G . . . NCR3 259197 broad.mit.edu 36 6 31665729 31665729 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147130 exon2 c.T197C p.V66A . . . BAT2 7916 broad.mit.edu 36 6 31706430 31706430 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004638 exon15 c.C2338T p.R780W . . . TUBB2B 347733 broad.mit.edu 36 6 3170759 3170759 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178012 exon4 c.C563T p.S188L . . . BAT2 7916 broad.mit.edu 36 6 31707674 31707674 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004638 exon16 c.G3245A p.R1082H . . . BAT2 7916 broad.mit.edu 36 6 31711004 31711004 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004638 exon22 c.A5277G p.P1759P . . . BAT4 7918 broad.mit.edu 36 6 31738264 31738264 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199237 exon4 c.C829T p.R277W . . . C6orf27 80737 broad.mit.edu 36 6 31852324 31852324 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025258 exon2 c.C212T p.P71L . . . TNXB 7148 broad.mit.edu 36 6 32120929 32120929 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032470 exon1 c.G46A p.V16M . . . TNXB 7148 broad.mit.edu 36 6 32164584 32164584 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019105 exon6 c.G2735A p.R912Q . . . TNXB 7148 broad.mit.edu 36 6 32164688 32164688 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019105 exon6 c.C2631T p.A877A . . . TNXB 7148 broad.mit.edu 36 6 32172635 32172635 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019105 exon3 c.C973T p.R325C . . . AGPAT1 10554 broad.mit.edu 36 6 32245736 32245736 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032741 exon6 c.C664T p.R222C . . . HLA-DRA 3122 broad.mit.edu 36 6 32518996 32518996 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019111 exon3 c.G385A p.V129I . . . WDR46 9277 broad.mit.edu 36 6 33356665 33356665 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164267 exon11 c.G1031A p.R344Q . . . WDR46 9277 broad.mit.edu 36 6 33356735 33356735 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164267 exon11 c.G961A p.A321T . . . SYNGAP1 8831 broad.mit.edu 36 6 33527642 33527642 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006772 exon19 c.G4013A p.R1338Q . . . ITPR3 3710 broad.mit.edu 36 6 33756391 33756391 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002224 exon33 c.G4432A p.A1478T . . . ITPR3 3710 broad.mit.edu 36 6 33764078 33764078 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002224 exon48 c.C6460T p.R2154W . . . GRM4 2914 broad.mit.edu 36 6 34208903 34208903 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000841 exon1 c.G349A p.E117K . . . ANKS1A 23294 broad.mit.edu 36 6 35155650 35155650 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015245 exon16 c.G2511A p.P837P . . . SCUBE3 222663 broad.mit.edu 36 6 35318016 35318016 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152753 exon13 c.G1475A p.C492Y . . . SCUBE3 222663 broad.mit.edu 36 6 35319778 35319778 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152753 exon17 c.G2132A p.R711H . . . PIM1 5292 broad.mit.edu 36 6 37248782 37248782 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002648 exon5 c.C640T p.R214C . . . TBC1D22B 55633 broad.mit.edu 36 6 37392900 37392900 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017772 exon12 c.C1329T p.Y443Y . . . MDGA1 266727 broad.mit.edu 36 6 37731603 37731603 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153487 exon4 c.C430T p.R144X . . . MDGA1 266727 broad.mit.edu 36 6 37734110 37734110 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153487 exon3 c.G271A p.E91K . . . DNAH8 1769 broad.mit.edu 36 6 38987227 38987227 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001371 exon64 c.G9095A p.R3032H . . . KCNK5 8645 broad.mit.edu 36 6 39266851 39266851 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003740 exon5 c.C1293T p.D431D . . . KCNK5 8645 broad.mit.edu 36 6 39267195 39267195 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003740 exon5 c.G949A p.G317R . . . DAAM2 23500 broad.mit.edu 36 6 39954242 39954242 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015345 exon13 c.C1445T p.T482M . . . DAAM2 23500 broad.mit.edu 36 6 39967161 39967161 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015345 exon18 c.C2212T p.R738W . . . TFEB 7942 broad.mit.edu 36 6 41766460 41766460 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007162 exon4 c.C387T p.H129H . . . UBR2 23304 broad.mit.edu 36 6 42690813 42690813 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184801 exon9 c.G1012T p.V338F . . . KLC4 89953 broad.mit.edu 36 6 43147963 43147963 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201521 exon12 c.C1480T p.R494W . . . PTK7 5754 broad.mit.edu 36 6 43235521 43235521 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152880 exon18 c.G2771A p.R924H . . . ZNF318 24149 broad.mit.edu 36 6 43431210 43431210 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014345 exon4 c.C1840T p.R614C . . . ABCC10 89845 broad.mit.edu 36 6 43507901 43507901 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198934 exon3 c.C205T p.R69X . . . GTPBP2 54676 broad.mit.edu 36 6 43700260 43700260 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019096 exon7 c.C1065T p.A355A . . . RSPH9 221421 broad.mit.edu 36 6 43721021 43721021 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193341 exon1 c.C208T p.P70S . . . TCTE1 202500 broad.mit.edu 36 6 44356016 44356016 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182539 exon5 c.C1386T p.S462S . . . AARS2 57505 broad.mit.edu 36 6 44378562 44378562 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020745 exon17 c.G2319T p.K773N . . . RUNX2 860 broad.mit.edu 36 6 45622986 45622986 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004348 exon7 c.G1490A p.G497D . . . GPR116 221395 broad.mit.edu 36 6 46938720 46938720 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098518 exon15 c.G2063A p.R688Q . . . GPR115 221393 broad.mit.edu 36 6 47788171 47788171 + Silent SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153838 exon5 c.C420A p.P140P . . . CDYL 9425 broad.mit.edu 36 6 4882848 4882848 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143970 exon4 c.C603A p.S201R . . . PKHD1 5314 broad.mit.edu 36 6 51632333 51632333 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138694 exon61 c.C10550A p.P3517H . . . PKHD1 5314 broad.mit.edu 36 6 51632632 51632632 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138694 exon61 c.C10251T p.S3417S . . . GSTA3 2940 broad.mit.edu 36 6 52875230 52875230 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000847 exon4 c.A145C p.S49R . . . F13A1 2162 broad.mit.edu 36 6 6211930 6211930 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000129 exon4 c.G431A p.R144Q . . . LGSN 51557 broad.mit.edu 36 6 64048410 64048410 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143940 exon5 c.G584A p.S195N . . . FAM135A 57579 broad.mit.edu 36 6 71292654 71292654 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162529 exon13 c.C3146T p.T1049M . . . RIMS1 22999 broad.mit.edu 36 6 72863534 72863534 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014989 exon3 c.G407A p.R136H . . . RIMS1 22999 broad.mit.edu 36 6 73004277 73004277 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168409 exon4 c.C67T p.R23X . . . CAGE1 285782 broad.mit.edu 36 6 7319235 7319235 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_205864 exon4 c.C408T p.G136G . . . C6orf150 115004 broad.mit.edu 36 6 74195243 74195243 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138441 exon4 c.G1127A p.R376Q . . . MTO1 25821 broad.mit.edu 36 6 74232785 74232785 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001123226 exon2 c.G350A p.R117H . . . MTO1 25821 broad.mit.edu 36 6 74247151 74247151 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001123226 exon7 c.C1162T p.R388C . . . DSP 1832 broad.mit.edu 36 6 7501049 7501049 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008844 exon2 c.G270A p.Q90Q . . . FILIP1 27145 broad.mit.edu 36 6 76120048 76120048 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015687 exon4 c.G556A p.E186K . . . FILIP1 27145 broad.mit.edu 36 6 76129285 76129285 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015687 exon3 c.C345T p.Y115Y . . . IRAK1BP1 134728 broad.mit.edu 36 6 79664501 79664501 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010844 exon4 c.C514T p.R172W . . . PHIP 55023 broad.mit.edu 36 6 79713211 79713211 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017934 exon37 c.A4306G p.T1436A . . . FAM46A 55603 broad.mit.edu 36 6 82516173 82516173 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017633 exon3 c.G1287A p.T429T . . . DOPEY1 23033 broad.mit.edu 36 6 83926283 83926283 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015018 exon37 c.A6847G p.N2283D . . . NT5E 4907 broad.mit.edu 36 6 86258524 86258524 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002526 exon8 c.G1471A p.E491K . . . ZNF292 23036 broad.mit.edu 36 6 88027706 88027706 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015021 exon8 c.T7640C p.V2547A . . . CASP8AP2 9994 broad.mit.edu 36 6 90629972 90629972 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001137667 exon7 c.C1823T p.S608F . . . CASP8AP2 9994 broad.mit.edu 36 6 90635380 90635380 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001137667 exon8 c.G5650A p.A1884T . . . AGPAT4 56895 broad.mit.edu 36 6 161480579 161480579 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020133 exon8 c.907delC p.R303fs . . . SRPK1 6732 broad.mit.edu 36 6 35949999 35949999 + Frame_Shift_Del DEL T - - rs34144793 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003137 exon7 c.574delA p.I192fs . . . COL12A1 1303 broad.mit.edu 36 6 75922808 75922808 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004370 exon15 c.3135delC p.P1045fs . . . CASP8AP2 9994 broad.mit.edu 36 6 90629170 90629170 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001137667 exon7 c.1021delA p.K341fs . . . BTN2A3 54718 broad.mit.edu 36 6 26539365 26539365 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . C6orf227 401253 broad.mit.edu 36 6 33663531 33663531 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . IRF5 3663 broad.mit.edu 36 7 128373798 128373799 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 - - - C - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098627 exon4 c.393_394insC p.Q131fs . . . LRCH4 4034 broad.mit.edu 36 7 100012523 100012523 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002319 exon13 c.C1406T p.A469V . . . PCOLCE 5118 broad.mit.edu 36 7 100041265 100041265 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002593 exon5 c.C619T p.L207L . . . MOSPD3 64598 broad.mit.edu 36 7 100048542 100048542 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040098 exon2 c.G192A p.A64A . . . SLC12A9 56996 broad.mit.edu 36 7 100302044 100302044 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020246 exon14 c.C2626T p.P876S . . . SRRT 51593 broad.mit.edu 36 7 100317708 100317708 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128852 exon5 c.C497T p.T166M . . . SRRT 51593 broad.mit.edu 36 7 100322415 100322415 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128852 exon14 c.G1708A p.A570T . . . ACHE 43 broad.mit.edu 36 7 100329103 100329103 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000665 exon2 c.G687A p.T229T . . . MUC17 140453 broad.mit.edu 36 7 100468441 100468441 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040105 exon3 c.C7024T p.R2342C . . . CUX1 1523 broad.mit.edu 36 7 101600547 101600547 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181552 exon10 c.C825T p.D275D . . . MLL5 55904 broad.mit.edu 36 7 104489857 104489857 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182931 exon4 c.G82A p.V28I . . . PIK3CG 5294 broad.mit.edu 36 7 106295387 106295387 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002649 exon2 c.C145T p.R49C . . . LAMB1 3912 broad.mit.edu 36 7 107387480 107387480 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002291 exon19 c.G2350A p.V784M . . . LAMB1 3912 broad.mit.edu 36 7 107390613 107390613 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002291 exon15 c.C1830T p.Y610Y . . . LAMB4 22798 broad.mit.edu 36 7 107495753 107495753 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007356 exon19 c.G2390T p.R797L . . . LAMB4 22798 broad.mit.edu 36 7 107526226 107526226 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007356 exon11 c.C1218T p.G406G . . . TES 26136 broad.mit.edu 36 7 115679176 115679176 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015641 exon5 c.G829A p.D277N . . . CAPZA2 830 broad.mit.edu 36 7 116315444 116315444 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006136 exon2 c.C67T p.H23Y . . . PTPRZ1 5803 broad.mit.edu 36 7 121411379 121411379 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002851 exon8 c.C900T p.Y300Y . . . AASS 10157 broad.mit.edu 36 7 121506224 121506224 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005763 exon22 c.G2413A p.D805N . . . CADPS2 93664 broad.mit.edu 36 7 122048947 122048947 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167940 exon5 c.C928T p.R310W . . . TMEM106B 54664 broad.mit.edu 36 7 12238033 12238033 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134232 exon8 c.C732T p.S244S . . . LMOD2 442721 broad.mit.edu 36 7 123083320 123083320 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207163 exon1 c.G67A p.A23T . . . WASL 8976 broad.mit.edu 36 7 123119660 123119660 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003941 exon9 c.C1324T p.R442X . . . SCIN 85477 broad.mit.edu 36 7 12650319 12650319 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001112706 exon12 c.A1613C p.N538T . . . FSCN3 29999 broad.mit.edu 36 7 127025782 127025782 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020369 exon4 c.C1018T p.R340X . . . PAX4 5078 broad.mit.edu 36 7 127038455 127038455 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006193 exon9 c.C931A p.L311I . . . SND1 27044 broad.mit.edu 36 7 127512093 127512093 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014390 exon19 c.G2192A p.R731H . . . FLNC 2318 broad.mit.edu 36 7 128272050 128272050 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001458 exon21 c.G3295A p.V1099I . . . AHCYL2 23382 broad.mit.edu 36 7 128816170 128816170 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015328 exon3 c.G513A p.S171S . . . AHCYL2 23382 broad.mit.edu 36 7 128840763 128840763 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015328 exon12 c.G1459A p.V487M . . . FAM40B 57464 broad.mit.edu 36 7 128912734 128912734 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020704 exon21 c.G2333A p.R778H . . . ZC3HC1 51530 broad.mit.edu 36 7 129449482 129449482 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016478 exon9 c.C1353T p.S451S . . . CPA5 93979 broad.mit.edu 36 7 129795560 129795560 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127442 exon11 c.G1112T p.G371V . . . MKLN1 4289 broad.mit.edu 36 7 130746640 130746640 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013255 exon7 c.T739C p.Y247H . . . PLXNA4 91584 broad.mit.edu 36 7 131515148 131515148 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020911 exon20 c.G3712A p.A1238T . . . PLXNA4 91584 broad.mit.edu 36 7 131563665 131563665 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020911 exon6 c.G1708A p.V570I . . . EXOC4 60412 broad.mit.edu 36 7 132610411 132610411 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037126 exon2 c.G221A p.R74H . . . AKR1B1 231 broad.mit.edu 36 7 133782609 133782609 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001628 exon8 c.G806A p.R269H . . . CNOT4 4850 broad.mit.edu 36 7 134698384 134698384 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190850 exon12 c.C1935T p.D645D . . . KIAA1549 57670 broad.mit.edu 36 7 138205014 138205014 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164665 exon14 c.G4585A p.E1529K . . . KIAA1549 57670 broad.mit.edu 36 7 138252730 138252730 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164665 exon2 c.G2182A p.E728K . . . UBN2 254048 broad.mit.edu 36 7 138596736 138596736 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173569 exon6 c.C1104T p.D368D . . . SLC37A3 84255 broad.mit.edu 36 7 139726558 139726558 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032295 exon3 c.C191T p.P64L . . . MKRN1 23608 broad.mit.edu 36 7 139825586 139825586 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T T T T Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001145125 exon1 c.A28C p.T10P . . . MGAM 8972 broad.mit.edu 36 7 141441953 141441953 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004668 exon41 c.C4890T p.G1630G . . . EPHB6 2051 broad.mit.edu 36 7 142272054 142272054 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004445 exon7 c.G374A p.R125Q . . . TRPV6 55503 broad.mit.edu 36 7 142280293 142280293 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018646 exon14 c.G1849A p.G617R . . . TRPV5 56302 broad.mit.edu 36 7 142336673 142336673 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019841 exon4 c.C459T p.R153R . . . CASP2 835 broad.mit.edu 36 7 142707449 142707449 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032982 exon8 c.G907A p.A303T . . . OR2A25 392138 broad.mit.edu 36 7 143403006 143403006 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004488 exon1 c.C761T p.A254V . . . EZH2 2146 broad.mit.edu 36 7 148137387 148137387 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152998 exon17 c.T1926C p.G642G . . . PDIA4 9601 broad.mit.edu 36 7 148331976 148331976 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004911 exon10 c.G1781A p.R594H . . . ZNF425 155054 broad.mit.edu 36 7 148432730 148432730 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001001661 exon4 c.G1166A p.G389D . . . ZNF777 27153 broad.mit.edu 36 7 148784017 148784017 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015694 exon2 c.G30A p.S10S . . . KRBA1 84626 broad.mit.edu 36 7 149050928 149050928 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032534 exon7 c.C720T p.G240G . . . ZNF862 643641 broad.mit.edu 36 7 149178301 149178301 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099220 exon5 c.G1058A p.R353Q . . . GIMAP1 170575 broad.mit.edu 36 7 150048401 150048401 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130759 exon3 c.G376A p.A126T . . . SMARCD3 6604 broad.mit.edu 36 7 150568237 150568237 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003078 exon11 c.C1028T p.A343V . . . NUB1 51667 broad.mit.edu 36 7 150702208 150702208 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016118 exon12 c.C1341T p.H447H . . . TMEM184A 202915 broad.mit.edu 36 7 1556345 1556345 + De_novo_Start_InFrame SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001097620 exon5 c.C492T p.Y164Y . . . UBE3C 9690 broad.mit.edu 36 7 156739522 156739522 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014671 exon20 c.C2808T p.C936C . . . ANKMY2 57037 broad.mit.edu 36 7 16608593 16608593 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020319 exon9 c.C1078A p.L360M . . . HDAC9 9734 broad.mit.edu 36 7 18591661 18591661 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178423 exon3 c.G255T p.E85D . . . SP8 221833 broad.mit.edu 36 7 20791879 20791879 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198956 exon3 c.G28T p.G10C . . . DNAH11 8701 broad.mit.edu 36 7 21623896 21623896 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003777 exon23 c.G4245A p.W1415X . . . SNX8 29886 broad.mit.edu 36 7 2270514 2270514 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_013321 exon6 c.G727A p.A243T . . . CHST12 55501 broad.mit.edu 36 7 2438844 2438844 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018641 exon2 c.C44T p.S15L . . . OSBPL3 26031 broad.mit.edu 36 7 24840745 24840745 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145321 exon14 c.C1523T p.A508V . . . TAX1BP1 8887 broad.mit.edu 36 7 27823079 27823079 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006024 exon15 c.C1982A p.P661H . . . GNA12 2768 broad.mit.edu 36 7 2801279 2801279 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007353 exon2 c.C334T p.R112X . . . CREB5 9586 broad.mit.edu 36 7 28810445 28810445 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011666 exon4 c.G390A p.T130T . . . CARD11 84433 broad.mit.edu 36 7 2925706 2925706 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032415 exon18 c.G2336A p.R779Q . . . WIPF3 644150 broad.mit.edu 36 7 29890561 29890561 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080529 exon4 c.C926A p.P309H . . . CRHR2 1395 broad.mit.edu 36 7 30671750 30671750 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001883 exon4 c.G346A p.A116T . . . PDE1C 5137 broad.mit.edu 36 7 31822093 31822093 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001191056 exon15 c.G1783A p.E595K . . . BBS9 27241 broad.mit.edu 36 7 33347080 33347080 + Silent SNP C T T rs61764066 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033605 exon11 c.C1245T p.V415V . . . NPSR1 387129 broad.mit.edu 36 7 34884226 34884226 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207173 exon9 c.C1039T p.R347C . . . HECW1 23072 broad.mit.edu 36 7 43567984 43567984 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015052 exon30 c.G4755A p.S1585S . . . BLVRA 644 broad.mit.edu 36 7 43794138 43794138 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000712 exon3 c.C123T p.G41G . . . MRPS24 64951 broad.mit.edu 36 7 43872921 43872921 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032014 exon4 c.G406A p.V136M . . . UBE2D4 51619 broad.mit.edu 36 7 43956806 43956806 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015983 exon6 c.G388A p.D130N . . . NPC1L1 29881 broad.mit.edu 36 7 44546138 44546138 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013389 exon2 c.C383T p.T128M . . . CCM2 83605 broad.mit.edu 36 7 45070058 45070058 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031443 exon3 c.C221T p.T74M . . . FOXK1 221937 broad.mit.edu 36 7 4768343 4768343 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037165 exon9 c.C1924A p.L642I . . . SUN3 256979 broad.mit.edu 36 7 48000452 48000452 + Missense_Mutation SNP C A A rs73111110 by1000genomes TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152782 exon9 c.G846T p.K282N . . . ABCA13 154664 broad.mit.edu 36 7 48289909 48289909 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152701 exon16 c.G8409A p.P2803P . . . RADIL 55698 broad.mit.edu 36 7 4883808 4883808 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018059 exon2 c.G489A p.S163S . . . IKZF1 10320 broad.mit.edu 36 7 50422556 50422556 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006060 exon6 c.T609G p.C203W . . . COBL 23242 broad.mit.edu 36 7 51120374 51120374 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015198 exon7 c.A1079G p.N360S . . . COBL 23242 broad.mit.edu 36 7 51254978 51254978 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015198 exon2 c.G199A p.V67M . . . PMS2 5395 broad.mit.edu 36 7 5993661 5993661 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000535 exon11 c.C1261T p.R421X . . . ZDHHC4 55146 broad.mit.edu 36 7 6591191 6591191 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018106 exon7 c.G516A p.V172V . . . C7orf42 55069 broad.mit.edu 36 7 66051034 66051034 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017994 exon4 c.G514A p.A172T . . . WBSCR17 64409 broad.mit.edu 36 7 70772897 70772897 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022479 exon8 c.C1271T p.P424L . . . STX1A 6804 broad.mit.edu 36 7 72757487 72757487 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004603 exon4 c.C212T p.T71M . . . ELN 2006 broad.mit.edu 36 7 73115624 73115624 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001081755 exon27 c.C1850T p.A617V . . . LIMK1 3984 broad.mit.edu 36 7 73161184 73161184 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002314 exon10 c.G1166A p.R389Q . . . CLIP2 7461 broad.mit.edu 36 7 73408688 73408688 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003388 exon5 c.C816T p.C272C . . . GTF2IRD1 9569 broad.mit.edu 36 7 73576348 73576348 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005685 exon8 c.G1018A p.A340T . . . GTF2IRD1 9569 broad.mit.edu 36 7 73647303 73647303 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005685 exon25 c.C2618T p.A873V . . . PION 54103 broad.mit.edu 36 7 76844592 76844592 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017439 exon9 c.G628A p.V210I . . . PCLO 27445 broad.mit.edu 36 7 82346606 82346606 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033026 exon10 c.C13637T p.T4546M . . . SEMA3D 223117 broad.mit.edu 36 7 84466741 84466741 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152754 exon17 c.G2285A p.R762Q . . . GRM3 2913 broad.mit.edu 36 7 86331567 86331567 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000840 exon6 c.A2600C p.N867T . . . ABCB1 5243 broad.mit.edu 36 7 86982661 86982661 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000927 exon26 c.T3104C p.V1035A . . . RUNDC3B 154661 broad.mit.edu 36 7 87238001 87238001 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134405 exon7 c.G798T p.K266N . . . ZNF804B 219578 broad.mit.edu 36 7 88803587 88803587 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181646 exon4 c.G3355A p.D1119N . . . AKAP9 10142 broad.mit.edu 36 7 91520152 91520152 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147185 exon22 c.C5545T p.R1849X . . . PEX1 5189 broad.mit.edu 36 7 91961581 91961581 + Nonsense_Mutation SNP G A A rs61750428 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000466 exon19 c.C2992T p.R998X . . . CCDC132 55610 broad.mit.edu 36 7 92778492 92778492 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017667 exon20 c.T1827C p.N609N . . . COL1A2 1278 broad.mit.edu 36 7 93878185 93878185 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000089 exon22 c.G1246A p.V416I . . . COL1A2 1278 broad.mit.edu 36 7 93893067 93893067 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000089 exon44 c.G2905A p.V969M . . . SMURF1 57154 broad.mit.edu 36 7 98496216 98496216 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020429 exon3 c.C145A p.H49N . . . ARPC1B 10095 broad.mit.edu 36 7 98823695 98823695 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005720 exon4 c.G267A p.T89T . . . PDAP1 11333 broad.mit.edu 36 7 98833541 98833541 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014891 exon5 c.C367T p.R123C . . . CYP3A7 1551 broad.mit.edu 36 7 99151465 99151465 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000765 exon7 c.C522T p.H174H . . . ZKSCAN1 7586 broad.mit.edu 36 7 99469422 99469422 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003439 exon6 c.G1358A p.R453H . . . MBLAC1 255374 broad.mit.edu 36 7 99563492 99563492 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203397 exon2 c.G538A p.A180T . . . PILRB 29990 broad.mit.edu 36 7 99794441 99794441 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178238 exon2 c.C257T p.P86L . . . PILRA 29992 broad.mit.edu 36 7 99809795 99809795 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178272 exon2 c.C257T p.P86L . . . PILRA 29992 broad.mit.edu 36 7 99809965 99809965 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178272 exon2 c.G427A p.E143K . . . C7orf51 222950 broad.mit.edu 36 7 99924255 99924255 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173564 exon4 c.G975A p.P325P . . . FLJ36031 168455 broad.mit.edu 36 7 106088244 106088244 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_175884 exon1 c.335delC p.P112fs . . . HOXA4 3201 broad.mit.edu 36 7 27135407 27135407 + Frame_Shift_Del DEL G - - rs66569027 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002141 exon2 c.925delC p.H309fs . . . CPVL 54504 broad.mit.edu 36 7 29036787 29036787 + Frame_Shift_Del DEL T - - rs5883182 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031311 exon12 c.1251delA p.K417fs . . . VPS13B 157680 broad.mit.edu 36 8 100914035 100914035 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152564 exon52 c.G9593A p.R3198Q . . . SPAG1 6674 broad.mit.edu 36 8 101306659 101306659 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003114 exon14 c.C1771T p.P591S . . . SNX31 169166 broad.mit.edu 36 8 101689942 101689942 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152628 exon8 c.G637A p.V213M . . . RP1L1 94137 broad.mit.edu 36 8 10502189 10502189 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178857 exon4 c.C6829T p.P2277S . . . RP1L1 94137 broad.mit.edu 36 8 10503831 10503831 + Silent SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178857 exon4 c.G5187T p.G1729G . . . LRP12 29967 broad.mit.edu 36 8 105578516 105578516 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013437 exon5 c.C1440T p.S480S . . . OXR1 55074 broad.mit.edu 36 8 107774187 107774187 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181354 exon5 c.G560A p.R187Q . . . EIF3E 3646 broad.mit.edu 36 8 109284458 109284458 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001568 exon12 c.G1229A p.S410N . . . PKHD1L1 93035 broad.mit.edu 36 8 110477524 110477524 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177531 exon11 c.G904A p.V302I . . . PKHD1L1 93035 broad.mit.edu 36 8 110543226 110543226 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177531 exon48 c.A7296G p.I2432M . . . DEFB135 613209 broad.mit.edu 36 8 11879452 11879452 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033017 exon2 c.A178G p.T60A . . . USP17L2 377630 broad.mit.edu 36 8 12033411 12033411 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201402 exon1 c.T268C p.Y90H . . . FER1L6 654463 broad.mit.edu 36 8 125201153 125201153 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039112 exon41 c.G5515A p.V1839I . . . KIAA0196 9897 broad.mit.edu 36 8 126126026 126126026 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014846 exon21 c.C2601T p.T867T . . . LONRF1 91694 broad.mit.edu 36 8 12627705 12627705 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152271 exon11 c.T2065A p.S689T . . . KCNQ3 3786 broad.mit.edu 36 8 133210785 133210785 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004519 exon15 c.C2525T p.T842M . . . KCNQ3 3786 broad.mit.edu 36 8 133211048 133211048 + Silent SNP G C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004519 exon15 c.C2262G p.L754L . . . KCNQ3 3786 broad.mit.edu 36 8 133211315 133211315 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004519 exon15 c.G1995A p.S665S . . . KCNQ3 3786 broad.mit.edu 36 8 133222593 133222593 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004519 exon10 c.G1430A p.R477H . . . PHF20L1 51105 broad.mit.edu 36 8 133918104 133918104 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016018 exon16 c.C2047T p.R683X . . . KCNK9 51305 broad.mit.edu 36 8 140700243 140700243 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016601 exon2 c.G565A p.A189T . . . KCNK9 51305 broad.mit.edu 36 8 140784340 140784340 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016601 exon1 c.C78T p.F26F . . . EIF2C2 27161 broad.mit.edu 36 8 141620509 141620509 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164623 exon15 c.C1970T p.T657M . . . EIF2C2 27161 broad.mit.edu 36 8 141628518 141628518 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164623 exon12 c.C1465T p.P489S . . . FLJ43860 389690 broad.mit.edu 36 8 142527319 142527319 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207414 exon21 c.G2689A p.V897M . . . BAI1 575 broad.mit.edu 36 8 143558078 143558078 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001702 exon8 c.G1749T p.E583D . . . ARC 23237 broad.mit.edu 36 8 143691939 143691939 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015193 exon1 c.C696T p.G232G . . . LYPD2 137797 broad.mit.edu 36 8 143829563 143829563 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_205545 exon2 c.C86T p.P29L . . . TOP1MT 116447 broad.mit.edu 36 8 144471380 144471380 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052963 exon10 c.G1218A p.T406T . . . MAPK15 225689 broad.mit.edu 36 8 144875800 144875800 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139021 exon12 c.C1298T p.A433V . . . SCRIB 23513 broad.mit.edu 36 8 144966536 144966536 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015356 exon9 c.T794G p.L265R . . . PLEC 5339 broad.mit.edu 36 8 145067161 145067161 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201383 exon32 c.G8828A p.R2943Q . . . PARP10 84875 broad.mit.edu 36 8 145129494 145129494 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032789 exon8 c.C2251T p.R751C . . . DLGAP2 9228 broad.mit.edu 36 8 1484815 1484815 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004745 exon2 c.G549A p.A183A . . . DLGAP2 9228 broad.mit.edu 36 8 1485144 1485144 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004745 exon2 c.C878T p.T293M . . . PCM1 5108 broad.mit.edu 36 8 17857302 17857302 + Silent SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006197 exon10 c.C1332A p.P444P . . . ARHGEF10 9639 broad.mit.edu 36 8 1892666 1892666 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014629 exon29 c.G3865A p.V1289I . . . LPL 4023 broad.mit.edu 36 8 19864006 19864006 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000237 exon9 c.G1423T p.G475C . . . LZTS1 11178 broad.mit.edu 36 8 20154944 20154944 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021020 exon2 c.G778A p.E260K . . . LGI3 203190 broad.mit.edu 36 8 22061829 22061829 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139278 exon8 c.G1436A p.R479H . . . RHOBTB2 23221 broad.mit.edu 36 8 22919585 22919585 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160036 exon6 c.C530T p.A177V . . . SLC25A37 51312 broad.mit.edu 36 8 23485065 23485065 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016612 exon4 c.G769A p.V257I . . . DOCK5 80005 broad.mit.edu 36 8 25215788 25215788 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024940 exon10 c.C877T p.R293C . . . PPP2R2A 5520 broad.mit.edu 36 8 26283668 26283668 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177591 exon10 c.G1196A p.R399H . . . SCARA5 286133 broad.mit.edu 36 8 27835129 27835129 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173833 exon4 c.C794T p.A265V . . . ZNF395 55893 broad.mit.edu 36 8 28270206 28270206 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018660 exon4 c.C483T p.D161D . . . KIF13B 23303 broad.mit.edu 36 8 29045796 29045796 + Missense_Mutation SNP C T T rs12549991 byHapMap TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015254 exon23 c.G2890A p.A964T . . . DUSP4 1846 broad.mit.edu 36 8 29250824 29250824 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001394 exon4 c.C823T p.R275C . . . CSMD1 64478 broad.mit.edu 36 8 2936480 2936480 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon48 c.C7251T p.C2417C . . . LEPROTL1 23484 broad.mit.edu 36 8 30081500 30081500 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128208 exon3 c.G235A p.V79M . . . CSMD1 64478 broad.mit.edu 36 8 3232518 3232518 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon18 c.C2688T p.D896D . . . C8orf41 80185 broad.mit.edu 36 8 33480836 33480836 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025115 exon4 c.G1087A p.A363T . . . UNC5D 137970 broad.mit.edu 36 8 35660768 35660768 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080872 exon5 c.G732A p.S244S . . . FGFR1 2260 broad.mit.edu 36 8 38434062 38434062 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174065 exon2 c.C60T p.T20T . . . TACC1 6867 broad.mit.edu 36 8 38796673 38796673 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006283 exon3 c.G754A p.A252T . . . ADAM9 8754 broad.mit.edu 36 8 39053993 39053993 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003816 exon16 c.G1787A p.R596Q . . . ANK1 286 broad.mit.edu 36 8 41670593 41670593 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020475 exon29 c.G3512A p.R1171H . . . SLC20A2 6575 broad.mit.edu 36 8 42413933 42413933 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006749 exon8 c.C1254T p.G418G . . . SGK196 84197 broad.mit.edu 36 8 43077978 43077978 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032237 exon4 c.G130A p.A44T . . . HGSNAT 138050 broad.mit.edu 36 8 43156463 43156463 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152419 exon11 c.G1031A p.R344H . . . PRKDC 5591 broad.mit.edu 36 8 48899076 48899076 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081640 exon64 c.C8817T p.S2939S . . . UBE2V2 7336 broad.mit.edu 36 8 49118210 49118210 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003350 exon2 c.C81T p.G27G . . . RB1CC1 9821 broad.mit.edu 36 8 53732615 53732615 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083617 exon15 c.G2327A p.R776Q . . . RGS20 8601 broad.mit.edu 36 8 55029216 55029216 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170587 exon5 c.C771T p.N257N . . . CLVS1 157807 broad.mit.edu 36 8 62375241 62375241 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173519 exon2 c.C301T p.R101C . . . ASPH 444 broad.mit.edu 36 8 62759263 62759263 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164753 exon2 c.G55A p.G19R . . . MCPH1 79648 broad.mit.edu 36 8 6290432 6290432 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024596 exon8 c.C1781T p.T594M . . . ANGPT2 285 broad.mit.edu 36 8 6372560 6372560 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001118888 exon2 c.T334C p.S112P . . . ARMC1 55156 broad.mit.edu 36 8 66680230 66680230 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018120 exon5 c.G563A p.R188H . . . XKR5 389610 broad.mit.edu 36 8 6668565 6668565 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207411 exon4 c.A525G p.P175P . . . TRIM55 84675 broad.mit.edu 36 8 67228980 67228980 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_184085 exon9 c.C1381A p.P461T . . . ADHFE1 137872 broad.mit.edu 36 8 67523740 67523740 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144650 exon8 c.A715C p.S239R . . . ADHFE1 137872 broad.mit.edu 36 8 67535245 67535245 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_144650 exon13 c.G1311A p.T437T . . . ARFGEF1 10565 broad.mit.edu 36 8 68277916 68277916 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006421 exon36 c.C5084T p.A1695V . . . NCOA2 10499 broad.mit.edu 36 8 71201733 71201733 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006540 exon19 c.C3785A p.T1262N . . . NCOA2 10499 broad.mit.edu 36 8 71231044 71231044 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006540 exon11 c.G2110A p.A704T . . . TPD52 7163 broad.mit.edu 36 8 81112968 81112968 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025252 exon6 c.G613A p.A205T . . . SGK223 157285 broad.mit.edu 36 8 8271187 8271187 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080826 exon2 c.G2142A p.P714P . . . MFHAS1 9258 broad.mit.edu 36 8 8785239 8785239 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004225 exon1 c.T2740C p.F914L . . . MFHAS1 9258 broad.mit.edu 36 8 8786390 8786390 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004225 exon1 c.C1589T p.A530V . . . PDP1 54704 broad.mit.edu 36 8 95004801 95004801 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161779 exon3 c.A1413G p.I471M . . . CDH17 1015 broad.mit.edu 36 8 95230188 95230188 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144663 exon14 c.C1887T p.A629A . . . RAD54B 25788 broad.mit.edu 36 8 95473244 95473244 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012415 exon10 c.T1578C p.F526F . . . KIAA1429 25962 broad.mit.edu 36 8 95592884 95592884 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015496 exon13 c.G3095A p.R1032H . . . KCNS2 3788 broad.mit.edu 36 8 99509760 99509760 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020697 exon2 c.G377A p.R126H . . . ZFHX4 79776 broad.mit.edu 36 8 77926404 77926404 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024721 exon10 c.4692delT p.S1564fs . . . C9orf125 84302 broad.mit.edu 36 9 103278560 103278560 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032342 exon2 c.C636T p.D212D . . . FKTN 2218 broad.mit.edu 36 9 107437165 107437165 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079802 exon11 c.G1185A p.P395P . . . PALM2-AKAP2 445815 broad.mit.edu 36 9 111938446 111938446 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147150 exon8 c.C801T p.G267G . . . SVEP1 79987 broad.mit.edu 36 9 112181594 112181594 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153366 exon44 c.A10262G p.H3421R . . . ZNF483 158399 broad.mit.edu 36 9 113344483 113344483 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133464 exon6 c.A1447G p.T483A . . . C9orf43 257169 broad.mit.edu 36 9 115215696 115215696 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152786 exon2 c.C102T p.G34G . . . RGS3 5998 broad.mit.edu 36 9 115286270 115286270 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144488 exon7 c.G557A p.R186H . . . RGS3 5998 broad.mit.edu 36 9 115299484 115299484 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144488 exon10 c.C820T p.R274W . . . RGS3 5998 broad.mit.edu 36 9 115397702 115397702 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144488 exon25 c.G3247A p.G1083R . . . ZNF618 114991 broad.mit.edu 36 9 115851625 115851625 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133374 exon14 c.C1943T p.P648L . . . ORM1 5004 broad.mit.edu 36 9 116127213 116127213 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000607 exon5 c.G500A p.R167H . . . DFNB31 25861 broad.mit.edu 36 9 116268466 116268466 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015404 exon3 c.T865C p.S289P . . . C9orf91 203197 broad.mit.edu 36 9 116419335 116419335 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153045 exon2 c.C39T p.G13G . . . TNFSF15 9966 broad.mit.edu 36 9 116592890 116592890 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005118 exon4 c.T419G p.L140R . . . TNC 3371 broad.mit.edu 36 9 116875885 116875885 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002160 exon10 c.A3032G p.K1011R . . . TNC 3371 broad.mit.edu 36 9 116889002 116889002 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002160 exon3 c.G829A p.D277N . . . CDK5RAP2 55755 broad.mit.edu 36 9 122239425 122239425 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018249 exon25 c.G3924A p.L1308L . . . CDK5RAP2 55755 broad.mit.edu 36 9 122260635 122260635 + Silent SNP G A A rs36001459 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018249 exon20 c.C2289T p.H763H . . . PSMD5 5711 broad.mit.edu 36 9 122633546 122633546 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005047 exon4 c.C445A p.L149M . . . DAB2IP 153090 broad.mit.edu 36 9 123570602 123570602 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032552 exon10 c.C1684T p.R562C . . . DAB2IP 153090 broad.mit.edu 36 9 123584468 123584468 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032552 exon16 c.G3356A p.R1119H . . . PDCL 5082 broad.mit.edu 36 9 124628806 124628806 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005388 exon2 c.G82A p.E28K . . . RC3H2 54542 broad.mit.edu 36 9 124660930 124660930 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018835 exon12 c.C2122T p.R708X . . . DENND1A 57706 broad.mit.edu 36 9 125185839 125185839 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020946 exon21 c.G1752A p.L584L . . . LHX2 9355 broad.mit.edu 36 9 125817238 125817238 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004789 exon3 c.C340T p.R114C . . . NEK6 10783 broad.mit.edu 36 9 126129505 126129505 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166167 exon7 c.C636T p.G212G . . . FAM129B 64855 broad.mit.edu 36 9 129310229 129310229 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022833 exon12 c.G1506A p.P502P . . . ENG 2022 broad.mit.edu 36 9 129620235 129620235 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114753 exon12 c.C1671T p.T557T . . . ST6GALNAC6 30815 broad.mit.edu 36 9 129692789 129692789 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013443 exon5 c.G652A p.G218S . . . FAM102A 399665 broad.mit.edu 36 9 129756000 129756000 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035254 exon2 c.C172T p.R58W . . . PTGES2 80142 broad.mit.edu 36 9 129923329 129923329 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025072 exon7 c.C1050T p.F350F . . . DNM1 1759 broad.mit.edu 36 9 130022343 130022343 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005336 exon6 c.G751A p.A251T . . . GOLGA2 2801 broad.mit.edu 36 9 130059483 130059483 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004486 exon25 c.C2780T p.A927V . . . GOLGA2 2801 broad.mit.edu 36 9 130062681 130062681 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004486 exon17 c.C1561T p.R521C . . . GOLGA2 2801 broad.mit.edu 36 9 130064750 130064750 + Silent SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004486 exon13 c.G966T p.R322R . . . SPTAN1 6709 broad.mit.edu 36 9 130413861 130413861 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195532 exon36 c.C4746T p.N1582N . . . ZER1 10444 broad.mit.edu 36 9 130553234 130553234 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006336 exon7 c.G1173A p.L391L . . . TBC1D13 54662 broad.mit.edu 36 9 130608108 130608108 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018201 exon10 c.C1068T p.C356C . . . CCBL1 883 broad.mit.edu 36 9 130635707 130635707 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122672 exon12 c.C1096T p.R366W . . . LRRC8A 56262 broad.mit.edu 36 9 130709417 130709417 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019594 exon3 c.G153T p.K51N . . . PHYHD1 254295 broad.mit.edu 36 9 130729181 130729181 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174933 exon4 c.C77T p.A26V . . . DOLK 22845 broad.mit.edu 36 9 130748844 130748844 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014908 exon1 c.G560A p.R187H . . . FAM73B 84895 broad.mit.edu 36 9 130869924 130869924 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032809 exon12 c.C1222T p.R408W . . . ASB6 140459 broad.mit.edu 36 9 131440092 131440092 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017873 exon6 c.C1064T p.A355V . . . ASB6 140459 broad.mit.edu 36 9 131440690 131440690 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177999 exon4 c.G472A p.V158I . . . ASS1 445 broad.mit.edu 36 9 132354548 132354548 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000050 exon13 c.C846T p.Y282Y . . . EXOSC2 23404 broad.mit.edu 36 9 132559057 132559057 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014285 exon1 c.C58A p.R20S . . . LAMC3 10319 broad.mit.edu 36 9 132914329 132914329 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006059 exon9 c.A1621C p.T541P . . . NUP214 8021 broad.mit.edu 36 9 133062900 133062900 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005085 exon29 c.C4198G p.P1400A . . . NUP214 8021 broad.mit.edu 36 9 133088044 133088044 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005085 exon32 c.G5808A p.S1936S . . . RAPGEF1 2889 broad.mit.edu 36 9 133467313 133467313 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198679 exon12 c.G1953A p.A651A . . . RAPGEF1 2889 broad.mit.edu 36 9 133508520 133508520 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198679 exon4 c.C424T p.L142F . . . NTNG2 84628 broad.mit.edu 36 9 134032057 134032057 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032536 exon2 c.G18A p.A6A . . . GFI1B 8328 broad.mit.edu 36 9 134856209 134856209 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001135031 exon6 c.G806A p.R269H . . . ABO 28 broad.mit.edu 36 9 135121050 135121050 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020469 exon7 c.G888A p.S296S . . . ABO 28 broad.mit.edu 36 9 135122626 135122626 + Missense_Mutation SNP G T T rs55716052 unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020469 exon6 c.C364A p.P122T . . . SURF6 6838 broad.mit.edu 36 9 135188900 135188900 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006753 exon5 c.C712T p.Q238X . . . ADAMTS13 11093 broad.mit.edu 36 9 135280932 135280932 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139025 exon5 c.G468A p.G156G . . . SLC2A6 11182 broad.mit.edu 36 9 135327023 135327023 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145099 exon9 c.C1279T p.R427W . . . SARDH 1757 broad.mit.edu 36 9 135572362 135572362 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007101 exon8 c.G1057T p.D353Y . . . WDR5 11091 broad.mit.edu 36 9 136003276 136003276 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017588 exon8 c.G574A p.D192N . . . GLT6D1 360203 broad.mit.edu 36 9 137655960 137655960 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182974 exon5 c.C635T p.P212L . . . AGPAT2 10555 broad.mit.edu 36 9 138690885 138690885 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006412 exon4 c.C561T p.G187G . . . FAM69B 138311 broad.mit.edu 36 9 138736495 138736495 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152421 exon4 c.G404A p.R135Q . . . C9orf172 389813 broad.mit.edu 36 9 138858726 138858726 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080482 exon1 c.C39T p.T13T . . . PNPLA7 375775 broad.mit.edu 36 9 139557017 139557017 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152286 exon6 c.T489C p.F163F . . . CACNA1B 774 broad.mit.edu 36 9 139892423 139892423 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000718 exon1 c.C217T p.R73C . . . CACNA1B 774 broad.mit.edu 36 9 139985843 139985843 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000718 exon11 c.G1521A p.P507P . . . TTC39B 158219 broad.mit.edu 36 9 15179768 15179768 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168340 exon12 c.G1128A p.A376A . . . SNAPC3 6619 broad.mit.edu 36 9 15423622 15423622 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039697 exon3 c.C465T p.F155F . . . BNC2 54796 broad.mit.edu 36 9 16717881 16717881 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017637 exon3 c.G244A p.G82R . . . HAUS6 54801 broad.mit.edu 36 9 19086745 19086745 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017645 exon2 c.C151T p.R51C . . . MLLT3 4300 broad.mit.edu 36 9 20404379 20404379 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004529 exon5 c.C465T p.S155S . . . SMARCA2 6595 broad.mit.edu 36 9 2046700 2046700 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139045 exon7 c.G1202A p.R401H . . . KIAA1797 54914 broad.mit.edu 36 9 20971436 20971436 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017794 exon40 c.G4389C p.K1463N . . . KIAA0020 9933 broad.mit.edu 36 9 2814723 2814723 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014878 exon11 c.G1128A p.T376T . . . TOPORS 10210 broad.mit.edu 36 9 32532177 32532177 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195622 exon2 c.C2151T p.T717T . . . TAF1L 138474 broad.mit.edu 36 9 32621937 32621937 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153809 exon1 c.T3641C p.V1214A . . . DNAI1 27019 broad.mit.edu 36 9 34504692 34504692 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012144 exon18 c.G1773A p.A591A . . . RUSC2 9853 broad.mit.edu 36 9 35537198 35537198 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014806 exon2 c.A680G p.Q227R . . . ZBTB5 9925 broad.mit.edu 36 9 37432005 37432005 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014872 exon2 c.C544T p.R182C . . . POLR1E 64425 broad.mit.edu 36 9 37491827 37491827 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022490 exon11 c.G1086A p.K362K . . . FBXO10 26267 broad.mit.edu 36 9 37515117 37515117 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012166 exon6 c.G1759A p.G587S . . . ERMP1 79956 broad.mit.edu 36 9 5800164 5800164 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024896 exon8 c.T1395C p.L465L . . . GLDC 2731 broad.mit.edu 36 9 6594710 6594710 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000170 exon7 c.C936T p.I312I . . . KANK1 23189 broad.mit.edu 36 9 701557 701557 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153186 exon2 c.G317A p.R106H . . . PGM5 5239 broad.mit.edu 36 9 70288756 70288756 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021965 exon9 c.C1451T p.P484L . . . PIP5K1B 8395 broad.mit.edu 36 9 70699173 70699173 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003558 exon8 c.C570T p.N190N . . . PRKACG 5568 broad.mit.edu 36 9 70817934 70817934 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002732 exon1 c.G895A p.A299T . . . TJP2 9414 broad.mit.edu 36 9 70979146 70979146 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201629 exon1 c.G38A p.R13Q . . . APBA1 320 broad.mit.edu 36 9 71321925 71321925 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163 exon2 c.G22A p.A8T . . . PRUNE2 158471 broad.mit.edu 36 9 78442954 78442954 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015225 exon13 c.G8799A p.A2933A . . . PRUNE2 158471 broad.mit.edu 36 9 78511933 78511933 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015225 exon8 c.G5077A p.G1693S . . . TLE4 7091 broad.mit.edu 36 9 81457439 81457439 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007005 exon7 c.G502A p.G168R . . . UBQLN1 29979 broad.mit.edu 36 9 85482535 85482535 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053067 exon6 c.C1032T p.G344G . . . HNRNPK 3190 broad.mit.edu 36 9 85776451 85776451 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002140 exon12 c.G964A p.A322T . . . DAPK1 1612 broad.mit.edu 36 9 89486336 89486336 + Silent SNP T A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004938 exon20 c.T2199A p.P733P . . . DAPK1 1612 broad.mit.edu 36 9 89511169 89511169 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004938 exon26 c.C3363T p.D1121D . . . C9orf79 286234 broad.mit.edu 36 9 89692428 89692428 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178828 exon4 c.C3206T p.A1069V . . . SPIN1 10927 broad.mit.edu 36 9 90273251 90273251 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006717 exon5 c.A500G p.Y167C . . . SEMA4D 10507 broad.mit.edu 36 9 91192332 91192332 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142287 exon14 c.C1119T p.S373S . . . AUH 549 broad.mit.edu 36 9 93022995 93022995 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001698 exon7 c.C756T p.G252G . . . ROR2 4920 broad.mit.edu 36 9 93526215 93526215 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004560 exon9 c.G2382A p.P794P . . . IPPK 64768 broad.mit.edu 36 9 94451597 94451597 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022755 exon5 c.C373T p.R125C . . . BICD2 23299 broad.mit.edu 36 9 94520808 94520808 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015250 exon5 c.G1940A p.R647H . . . BICD2 23299 broad.mit.edu 36 9 94522415 94522415 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C T Unknown Valid Germline Phase_I Capture Illumina Illumina HiSeq NM_015250 exon4 c.G1050A p.Q350Q . . . ZNF484 83744 broad.mit.edu 36 9 94649136 94649136 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007101 exon4 c.G1646T p.C549F . . . SUSD3 203328 broad.mit.edu 36 9 94877910 94877910 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_145006 exon2 c.C112A p.P38T . . . WNK2 65268 broad.mit.edu 36 9 95066129 95066129 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006648 exon15 c.C3689T p.T1230M . . . ZNF169 169841 broad.mit.edu 36 9 96102644 96102644 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194320 exon5 c.G983A p.R328H . . . ZNF169 169841 broad.mit.edu 36 9 96102970 96102970 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194320 exon5 c.C1309T p.R437W . . . FANCC 2176 broad.mit.edu 36 9 96913733 96913733 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000136 exon13 c.G1162A p.G388R . . . PTCH1 5727 broad.mit.edu 36 9 97258444 97258444 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083605 exon19 c.G2788A p.V930M . . . ZNF782 158431 broad.mit.edu 36 9 98620866 98620866 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001662 exon6 c.A1260C p.K420N . . . CTSL2 1515 broad.mit.edu 36 9 98837716 98837716 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001333 exon6 c.G702A p.K234K . . . SMC2 10592 broad.mit.edu 36 9 105925322 105925322 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006444 exon17 c.2245delA p.K749fs . . . C9orf135 138255 broad.mit.edu 36 9 71662715 71662715 + Splice_Site SNP T A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . USP9X 8239 broad.mit.edu 36 X 40973978 40973979 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039590 exon43 c.7433_7434insA p.V2478fs . . . DRP2 1821 broad.mit.edu 36 X 100400074 100400074 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001939 exon22 c.C2511T p.A837A . . . WWC3 55841 broad.mit.edu 36 X 10045433 10045433 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015691 exon11 c.C1334T p.T445M . . . CLCN4 1183 broad.mit.edu 36 X 10113087 10113087 + Silent SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001830 exon3 c.A15G p.G5G . . . MCART6 401612 broad.mit.edu 36 X 103236160 103236160 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012755 exon2 c.G437A p.R146H . . . MORC4 79710 broad.mit.edu 36 X 106072511 106072511 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085354 exon15 c.G2266A p.E756K . . . COL4A5 1287 broad.mit.edu 36 X 107815988 107815988 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000495 exon46 c.G4270T p.G1424X . . . GUCY2F 2986 broad.mit.edu 36 X 108595230 108595230 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001522 exon3 c.G829A p.V277I . . . CXorf61 203413 broad.mit.edu 36 X 115507015 115507015 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017978 exon2 c.A263G p.E88G . . . DOCK11 139818 broad.mit.edu 36 X 117596562 117596562 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144658 exon13 c.C1436T p.A479V . . . RHOXF2B 727940 broad.mit.edu 36 X 119177164 119177164 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032498 exon2 c.G295A p.G99S . . . ODZ1 10178 broad.mit.edu 36 X 123367975 123367975 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014253 exon25 c.A5007G p.G1669G . . . BCORL1 63035 broad.mit.edu 36 X 128990403 128990403 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021946 exon7 c.C4191T p.N1397N . . . USP26 83844 broad.mit.edu 36 X 131987333 131987333 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031907 exon1 c.G2582A p.R861Q . . . SLITRK2 84631 broad.mit.edu 36 X 144712575 144712575 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144006 exon3 c.C940T p.R314X . . . MOSPD2 158747 broad.mit.edu 36 X 14828639 14828639 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152581 exon6 c.A499T p.I167F . . . CD99L2 83692 broad.mit.edu 36 X 149688189 149688189 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_134446 exon9 c.G618A p.P206P . . . TMEM187 8269 broad.mit.edu 36 X 152901356 152901356 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003492 exon2 c.T649C p.W217R . . . ATP6AP1 537 broad.mit.edu 36 X 153313935 153313935 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001183 exon4 c.C493T p.R165W . . . RBBP7 5931 broad.mit.edu 36 X 16786819 16786819 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198719 exon4 c.C514T p.R172C . . . NHS 4810 broad.mit.edu 36 X 17649501 17649501 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136024 exon5 c.A404G p.E135G . . . NHS 4810 broad.mit.edu 36 X 17656027 17656027 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136024 exon7 c.C3349T p.P1117S . . . NHS 4810 broad.mit.edu 36 X 17660069 17660069 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136024 exon9 c.C3989T p.A1330V . . . RS1 6247 broad.mit.edu 36 X 18570148 18570148 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000330 exon6 c.G572A p.R191Q . . . RS1 6247 broad.mit.edu 36 X 18584758 18584758 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000330 exon3 c.C120T p.C40C . . . RS1 6247 broad.mit.edu 36 X 18585690 18585690 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000330 exon2 c.G69A p.S23S . . . ACOT9 23597 broad.mit.edu 36 X 23661252 23661252 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037171 exon4 c.G149A p.R50Q . . . ARSH 347527 broad.mit.edu 36 X 2955494 2955494 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011719 exon7 c.G1177A p.G393R . . . ARSF 416 broad.mit.edu 36 X 3012419 3012419 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004042 exon6 c.C542T p.T181M . . . USP9X 8239 broad.mit.edu 36 X 40910163 40910163 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039590 exon16 c.C2080T p.R694C . . . CASK 8573 broad.mit.edu 36 X 41322573 41322573 + Silent SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126054 exon15 c.G1467A p.R489R . . . ARAF 369 broad.mit.edu 36 X 47309204 47309204 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001654 exon4 c.G265A p.E89K . . . ZNF630 57232 broad.mit.edu 36 X 47804202 47804202 + Silent SNP T C C novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190255 exon5 c.A531G p.L177L . . . HDAC6 10013 broad.mit.edu 36 X 48558035 48558035 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006044 exon12 c.C943T p.R315W . . . PRAF2 11230 broad.mit.edu 36 X 48816581 48816581 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007213 exon3 c.G428A p.R143H . . . PAGE1 8712 broad.mit.edu 36 X 49342561 49342561 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003785 exon4 c.C287T p.A96V . . . DGKK 139189 broad.mit.edu 36 X 50137838 50137838 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013742 exon22 c.G3109A p.G1037R . . . HUWE1 10075 broad.mit.edu 36 X 53581315 53581315 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031407 exon78 c.C12064T p.R4022C . . . HUWE1 10075 broad.mit.edu 36 X 53588292 53588292 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031407 exon72 c.C11205T p.D3735D . . . FAM120C 54954 broad.mit.edu 36 X 54176971 54176971 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017848 exon8 c.G1850T p.R617M . . . TRO 7216 broad.mit.edu 36 X 54966090 54966090 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016157 exon3 c.G400A p.A134T . . . ALAS2 212 broad.mit.edu 36 X 55064361 55064361 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037967 exon4 c.C376T p.R126C . . . FAM123B 139285 broad.mit.edu 36 X 63329597 63329597 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152424 exon2 c.C295A p.L99M . . . VSIG4 11326 broad.mit.edu 36 X 65161610 65161610 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184831 exon5 c.C640T p.R214W . . . EFNB1 1947 broad.mit.edu 36 X 67975268 67975268 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004429 exon2 c.G212A p.R71Q . . . P2RY4 5030 broad.mit.edu 36 X 69395406 69395406 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002565 exon1 c.G794A p.R265H . . . TEX11 56159 broad.mit.edu 36 X 69989711 69989711 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003811 exon8 c.C468T p.Y156Y . . . MED12 9968 broad.mit.edu 36 X 70277277 70277277 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005120 exon42 c.G6112A p.V2038I . . . NLGN3 54413 broad.mit.edu 36 X 70306009 70306009 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166660 exon6 c.G1764A p.V588V . . . TAF1 6872 broad.mit.edu 36 X 70600524 70600524 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138923 exon38 c.C5522T p.P1841L . . . NHSL2 340527 broad.mit.edu 36 X 71275431 71275431 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013627 exon6 c.G1308T p.K436N . . . NHSL2 340527 broad.mit.edu 36 X 71276229 71276229 + Silent SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013627 exon6 c.G2106A p.P702P . . . ZCCHC5 203430 broad.mit.edu 36 X 77799312 77799312 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152694 exon2 c.C1262T p.P421L . . . TBX22 50945 broad.mit.edu 36 X 79168892 79168892 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109878 exon6 c.C667T p.R223X . . . HDX 139324 broad.mit.edu 36 X 83617051 83617051 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177479 exon3 c.G11A p.R4H . . . TBL1X 6907 broad.mit.edu 36 X 9639710 9639710 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001139468 exon16 c.C1346T p.T449M . . . TNMD 64102 broad.mit.edu 36 X 99740795 99740795 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022144 exon6 c.C704T p.A235V . . . MIR223 407008 broad.mit.edu 36 X 65155453 65155453 + RNA SNP G A A novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . APOOL 139322 broad.mit.edu 36 X 84208788 84208788 + Splice_Site SNP G T T novel unknown TCGA-AA-3864-01A-01W-0995-10 TCGA-AA-3864-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . .