Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PLXDC2	84898	broad.mit.edu	36	10	20546450	20546450	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032812	exon11	c.G1212T	p.R404S	.	.	.
BLID	414899	broad.mit.edu	36	11	121491799	121491800	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001786	exon1	c.42_43insT	p.F14fs	.	.	.
KCNQ1	3784	broad.mit.edu	36	11	2566524	2566525	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_181798	exon10	c.876_877insA	p.K292fs	.	.	.
KBTBD3	143879	broad.mit.edu	36	11	105429191	105429191	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152433	exon3	c.T1435C	p.Y479H	.	.	.
PLEKHA7	144100	broad.mit.edu	36	11	16829362	16829362	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175058	exon8	c.C648T	p.I216I	.	.	.
DTX1	1840	broad.mit.edu	36	12	111999712	111999712	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004416	exon2	c.C360A	p.A120A	.	.	.
ESPL1	9700	broad.mit.edu	36	12	51969265	51969265	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012291	exon21	c.G4833A	p.R1611R	.	.	.
MAP3K12	7786	broad.mit.edu	36	12	52166523	52166523	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001193511	exon3	c.G596A	p.R199Q	.	.	.
AICDA	57379	broad.mit.edu	36	12	8649292	8649292	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020661	exon3	c.C213A	p.D71E	.	.	.
NALCN	259232	broad.mit.edu	36	13	100557893	100557893	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052867	exon22	c.G2525A	p.R842Q	.	.	.
FOXO1	2308	broad.mit.edu	36	13	40032890	40032890	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002015	exon2	c.C738T	p.S246S	.	.	.
MRPS31	10240	broad.mit.edu	36	13	40243272	40243273	+	Translation_Start_Site	DNP	TC	GA	GA	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005830	exon1	c.0_1TC	.	.	.	.
PDE8A	5151	broad.mit.edu	36	15	83457646	83457646	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002605	exon13	c.G1149A	p.R383R	.	.	.
SPECC1	92521	broad.mit.edu	36	17	19940623	19940623	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152904	exon2	c.C67T	p.R23W	.	.	.
ACCN1	40	broad.mit.edu	36	17	28440115	28440115	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_183377	exon3	c.C866T	p.T289M	.	.	.
GSG2	83903	broad.mit.edu	36	17	3574872	3574873	+	Missense_Mutation	DNP	CT	TC	TC	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031965	exon1	c.894_895TC	.	.	.	.
G6PC3	92579	broad.mit.edu	36	17	39508233	39508233	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138387	exon5	c.C565T	p.R189X	.	.	.
CCDC103	388389	broad.mit.edu	36	17	40335400	40335400	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_213607	exon4	c.G418A	p.G140R	.	.	.
TP53	7157	broad.mit.edu	36	17	7517606	7517606	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon9	c.965delC	p.P322fs	.	.	.
SEC11C	90701	broad.mit.edu	36	18	54970876	54970876	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033280	exon3	c.G326C	p.R109T	.	.	.
ARHGAP33	115703	broad.mit.edu	36	19	40961096	40961096	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052948	exon4	c.C264T	p.T88T	.	.	.
MYH14	79784	broad.mit.edu	36	19	55471070	55471070	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001077186	exon27	c.G3379A	p.E1127K	.	.	.
ZNF528	84436	broad.mit.edu	36	19	57611194	57611194	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032423	exon7	c.G1277A	p.R426Q	.	.	.
ZNF264	9422	broad.mit.edu	36	19	62415692	62415692	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003417	exon4	c.G1415T	p.R472L	.	.	.
KCND3	3752	broad.mit.edu	36	1	112326261	112326261	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004980	exon2	c.C611T	p.T204M	.	.	.
SEMA6C	10500	broad.mit.edu	36	1	149375664	149375664	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001178061	exon12	c.C990T	p.A330A	.	.	.
NTRK1	4914	broad.mit.edu	36	1	155116442	155116442	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001012331	exon15	c.C2056T	p.R686C	.	.	.
ASTN1	460	broad.mit.edu	36	1	175268379	175268379	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004319	exon3	c.G701A	p.R234Q	.	.	.
RGS13	6003	broad.mit.edu	36	1	190895108	190895108	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144766	exon6	c.G312C	p.S104S	.	.	.
C8A	731	broad.mit.edu	36	1	57155964	57155964	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000562	exon11	c.C1742T	p.T581M	.	.	.
SLC44A5	204962	broad.mit.edu	36	1	75457609	75457609	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152697	exon16	c.C1187T	p.A396V	.	.	.
CAMTA1	23261	broad.mit.edu	36	1	7647028	7647028	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015215	exon9	c.C1834T	p.P612S	.	.	.
LPHN2	23266	broad.mit.edu	36	1	82206437	82206437	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012302	exon12	c.A2438G	p.N813S	.	.	.
C20orf26	26074	broad.mit.edu	36	20	20226936	20226936	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015585	exon25	c.G3328A	p.A1110T	.	.	.
CST9	128822	broad.mit.edu	36	20	23532311	23532311	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008693	exon2	c.T316C	p.F106L	.	.	.
KRTAP19-6	337973	broad.mit.edu	36	21	30835968	30835968	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_181612	exon1	c.G56T	p.G19V	.	.	.
WDR75	84128	broad.mit.edu	36	2	190041532	190041532	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032168	exon15	c.G1715A	p.S572N	.	.	.
CYP20A1	57404	broad.mit.edu	36	2	203869468	203869468	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_177538	exon12	c.A1175C	p.E392A	.	.	.
APOB	338	broad.mit.edu	36	2	21108751	21108751	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000384	exon10	c.G1332A	p.A444A	.	.	.
NHEJ1	79840	broad.mit.edu	36	2	219651133	219651133	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024782	exon6	c.T628G	p.F210V	.	.	.
PER2	8864	broad.mit.edu	36	2	238834304	238834304	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022817	exon13	c.C1446A	p.Y482X	.	.	.
ROPN1B	152015	broad.mit.edu	36	3	127173670	127173670	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012337	exon2	c.C83A	p.A28E	.	.	.
PCOLCE2	26577	broad.mit.edu	36	3	144022484	144022484	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013363	exon8	c.C1043T	p.A348V	.	.	.
GNB4	59345	broad.mit.edu	36	3	180617006	180617006	+	Nonsense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021629	exon5	c.T236G	p.L79X	.	.	.
DCUN1D1	54165	broad.mit.edu	36	3	184148064	184148064	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020640	exon5	c.A571C	p.K191Q	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138672133	138672133	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019035	exon1	c.G560A	p.R187Q	.	.	.
GABRA4	2557	broad.mit.edu	36	4	46625039	46625039	+	Nonsense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000809	exon9	c.T1625G	p.L542X	.	.	.
APC	324	broad.mit.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C2572T	p.R858X	 APC,large_intestine,NS,Substitution - Nonsense,0 	.	.
PCDHB16	57717	broad.mit.edu	36	5	140543947	140543947	+	Missense_Mutation	SNP	C	A	A	rs702386	byCluster	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020957	exon1	c.C1629A	p.S543R	.	.	.
PCDHB10	56126	broad.mit.edu	36	5	140554175	140554175	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018930	exon1	c.G1866C	p.G622G	.	.	.
PCDHB14	56122	broad.mit.edu	36	5	140585629	140585629	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018934	exon1	c.C2368T	p.R790X	.	.	.
GPR6	2830	broad.mit.edu	36	6	110407237	110407237	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005284	exon1	c.G229A	p.V77M	.	.	.
ANKS1A	23294	broad.mit.edu	36	6	35135941	35135941	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015245	exon13	c.A2117G	p.E706G	.	.	.
STK38	11329	broad.mit.edu	36	6	36574125	36574125	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007271	exon11	c.A1069G	p.I357V	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75949789	75949789	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004370	exon10	c.A1588T	p.I530L	.	.	.
SDK1	221935	broad.mit.edu	36	7	4120258	4120258	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152744	exon25	c.C3649T	p.R1217C	.	.	.
ARPC1A	10552	broad.mit.edu	36	7	98789515	98789515	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001190996	exon6	c.C506T	p.T169M	.	.	.
LOXL2	4017	broad.mit.edu	36	8	23247067	23247067	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002318	exon5	c.G758A	p.R253Q	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2819486	2819486	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033225	exon56	c.C8635T	p.R2879C	.	.	.
RALYL	138046	broad.mit.edu	36	8	85604268	85604268	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001100392	exon3	c.G157A	p.V53I	.	.	.
GOLGA2	2801	broad.mit.edu	36	9	130059305	130059305	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004486	exon26	c.C2871T	p.N957N	.	.	.
LRRC8A	56262	broad.mit.edu	36	9	130710533	130710533	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019594	exon3	c.C1269T	p.N423N	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89454727	89454727	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004938	exon16	c.C1500T	p.A500A	.	.	.
MID2	11043	broad.mit.edu	36	X	107047618	107047618	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012216	exon7	c.G1428A	p.A476A	.	.	.
ACSL4	2182	broad.mit.edu	36	X	108793286	108793286	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004458	exon13	c.C1392T	p.G464G	.	.	.
GPR50	9248	broad.mit.edu	36	X	150095944	150095944	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004224	exon1	c.G93A	p.M31I	.	.	.
FAM47A	158724	broad.mit.edu	36	X	34059732	34059732	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_203408	exon1	c.G585A	p.P195P	.	.	.
ATP6AP2	10159	broad.mit.edu	36	X	40333296	40333296	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005765	exon2	c.G152C	p.G51A	.	.	.