Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
KNDC1	85442	broad.mit.edu	36	10	134877599	134877599	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152643	exon26	c.A4660C	p.T1554P	.	.	.
TUBAL3	79861	broad.mit.edu	36	10	5425682	5425682	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024803	exon4	c.G1139A	p.R380Q	.	.	.
CCAR1	55749	broad.mit.edu	36	10	70184531	70184531	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018237	exon12	c.C1399G	p.L467V	.	.	.
CEP164	22897	broad.mit.edu	36	11	116785665	116785665	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014956	exon30	c.G3870A	p.P1290P	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120328855	120328855	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014619	exon13	c.G1672T	p.V558F	.	.	.
SORL1	6653	broad.mit.edu	36	11	120995714	120995714	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003105	exon43	c.G5767A	p.V1923I	.	.	.
TSG101	7251	broad.mit.edu	36	11	18480694	18480694	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006292	exon7	c.C555A	p.Y185X	.	.	.
LRRC4C	57689	broad.mit.edu	36	11	40093953	40093953	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020929	exon2	c.C466T	p.R156X	.	.	.
DNHD1	144132	broad.mit.edu	36	11	6497412	6497412	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144666	exon8	c.G1399A	p.E467K	.	.	.
RBM14	10432	broad.mit.edu	36	11	66148385	66148385	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006328	exon2	c.G462T	p.G154G	.	.	.
CCDC90B	60492	broad.mit.edu	36	11	82654621	82654621	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021825	exon8	c.G643A	p.A215T	.	.	.
FAT3	120114	broad.mit.edu	36	11	92172013	92172013	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008781	exon9	c.T6186A	p.H2062Q	.	.	.
FOLR3	2352	broad.mit.edu	36	11	71528118	71528120	+	In_Frame_Del	DEL	GTC	-	-	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	GTC	GTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000804	exon4	c.435_437del	p.145_146del	.	.	.
PWP1	11137	broad.mit.edu	36	12	106630038	106630038	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007062	exon15	c.C1417T	p.R473X	.	.	.
OAS3	4940	broad.mit.edu	36	12	111869000	111869000	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006187	exon4	c.G706A	p.A236T	.	.	.
PRB4	5545	broad.mit.edu	36	12	11352445	11352445	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002723	exon3	c.C739A	p.Q247K	.	.	.
CNTN1	1272	broad.mit.edu	36	12	39602495	39602495	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175038	exon4	c.G365T	p.G122V	.	.	.
SPATS2	65244	broad.mit.edu	36	12	48170780	48170780	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_023071	exon6	c.A263C	p.K88T	.	.	.
BAZ2A	11176	broad.mit.edu	36	12	55290172	55290172	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013449	exon9	c.C1880T	p.T627M	.	.	.
TAC3	6866	broad.mit.edu	36	12	55692451	55692451	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001178054	exon5	c.G291A	p.K97K	.	.	.
TMEM5	10329	broad.mit.edu	36	12	62485323	62485323	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014254	exon5	c.G786A	p.L262L	.	.	.
NCAPD2	9918	broad.mit.edu	36	12	6507663	6507663	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014865	exon25	c.C3207T	p.P1069P	.	.	.
LEPREL2	10536	broad.mit.edu	36	12	6810696	6810696	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014262	exon5	c.G1040A	p.R347Q	.	.	.
KERA	11081	broad.mit.edu	36	12	89974181	89974181	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007035	exon2	c.C9G	p.G3G	.	.	.
ATP8A2	51761	broad.mit.edu	36	13	25031142	25031142	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016529	exon14	c.C1295T	p.T432M	.	.	.
RXFP2	122042	broad.mit.edu	36	13	31269378	31269378	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166058	exon16	c.T1755C	p.Y585Y	.	.	.
NEK5	341676	broad.mit.edu	36	13	51559490	51559490	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199289	exon15	c.C1377T	p.N459N	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57106795	57106795	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040429	exon1	c.C2114T	p.S705L	.	.	.
MIPOL1	145282	broad.mit.edu	36	14	37039036	37039036	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001195297	exon14	c.G1204T	p.E402X	.	.	.
DCAF4	26094	broad.mit.edu	36	14	72495211	72495211	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181341	exon12	c.C1253T	p.A418V	.	.	.
DICER1	23405	broad.mit.edu	36	14	94660446	94660446	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001195573	exon7	c.C1216T	p.Q406X	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22472986	22472986	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018958	exon1	c.G879A	p.P293P	.	.	.
PLA2G4D	283748	broad.mit.edu	36	15	40166815	40166815	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178034	exon3	c.G230A	p.R77H	.	.	.
NRG4	145957	broad.mit.edu	36	15	74041269	74041269	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138573	exon4	c.C206T	p.A69V	.	.	.
NR2F2	7026	broad.mit.edu	36	15	94678383	94678383	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001145155	exon2	c.A118T	p.N40Y	.	.	.
VWA3A	146177	broad.mit.edu	36	16	22065165	22065165	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173615	exon27	c.C2838T	p.S946S	.	.	.
PRR14	78994	broad.mit.edu	36	16	30574935	30574935	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024031	exon12	c.T1560C	p.A520A	.	.	.
CMTM4	146223	broad.mit.edu	36	16	65227890	65227890	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_181521	exon2	c.G282A	p.A94A	.	.	.
BCMO1	53630	broad.mit.edu	36	16	79861379	79861379	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017429	exon7	c.G958A	p.V320M	.	.	.
PLCG2	5336	broad.mit.edu	36	16	80510729	80510729	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002661	exon20	c.C2194T	p.R732C	.	.	.
TUFM	7284	broad.mit.edu	36	16	28764259	28764261	+	In_Frame_Del	DEL	CTC	-	-	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	CTC	CTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003321	exon3	c.289_291del	p.97_97del	.	.	.
C17orf103	256302	broad.mit.edu	36	17	21088095	21088095	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152914	exon2	c.G141A	p.T47T	.	.	.
C17orf75	64149	broad.mit.edu	36	17	27693168	27693168	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022344	exon1	c.G104C	p.S35T	.	.	.
KRTAP4-4	84616	broad.mit.edu	36	17	36570166	36570166	+	Missense_Mutation	SNP	G	A	A	rs73983195	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032524	exon1	c.C304T	p.R102C	.	.	.
ATP2A3	489	broad.mit.edu	36	17	3786369	3786369	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_174955	exon16	c.G2465A	p.R822Q	.	.	.
NBR1	4077	broad.mit.edu	36	17	38708046	38708046	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005899	exon17	c.A2363C	p.N788T	.	.	.
KIAA1267	284058	broad.mit.edu	36	17	41499847	41499847	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015443	exon6	c.C1726T	p.R576X	.	.	.
RPL38	6169	broad.mit.edu	36	17	69717548	69717548	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000999	exon5	c.G198A	p.V66V	.	.	.
GPRC5C	55890	broad.mit.edu	36	17	69947644	69947644	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018653	exon2	c.G170A	p.R57H	.	.	.
ST8SIA3	51046	broad.mit.edu	36	18	53175521	53175521	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015879	exon3	c.C682T	p.R228C	.	.	.
NARS	4677	broad.mit.edu	36	18	53425477	53425477	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004539	exon9	c.G888T	p.L296F	.	.	.
RAX	30062	broad.mit.edu	36	18	55091210	55091210	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013435	exon1	c.G209A	p.R70Q	.	.	.
ZNF536	9745	broad.mit.edu	36	19	35628218	35628218	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014717	exon2	c.G1909A	p.G637S	.	.	.
UPK1A	11045	broad.mit.edu	36	19	40858694	40858694	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007000	exon5	c.C581T	p.T194M	.	.	.
SARS2	54938	broad.mit.edu	36	19	44113161	44113161	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001145901	exon1	c.G56A	p.R19Q	.	.	.
ZNF233	353355	broad.mit.edu	36	19	49468911	49468911	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181756	exon5	c.G258A	p.E86E	.	.	.
KLK15	55554	broad.mit.edu	36	19	56022009	56022009	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017509	exon3	c.G418C	p.V140L	.	.	.
CLEC4M	10332	broad.mit.edu	36	19	7736936	7736936	+	Silent	SNP	G	C	C	rs59003279	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144904	exon4	c.G474C	p.T158T	.	.	.
HRNR	388697	broad.mit.edu	36	1	150454175	150454175	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001009931	exon3	c.G6554A	p.R2185H	.	.	.
FLG	2312	broad.mit.edu	36	1	150541893	150541893	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002016	exon3	c.T12093C	p.Y4031Y	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156851743	156851743	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003126	exon48	c.C6675T	p.D2225D	.	.	.
FAM5C	339479	broad.mit.edu	36	1	188500799	188500799	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_199051	exon4	c.C437T	p.S146L	.	.	.
ASPM	259266	broad.mit.edu	36	1	195364414	195364414	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018136	exon10	c.G2765A	p.S922N	.	.	.
USH2A	7399	broad.mit.edu	36	1	214038923	214038923	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_206933	exon50	c.G9907A	p.D3303N	.	.	.
MIA3	375056	broad.mit.edu	36	1	220905514	220905514	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198551	exon28	c.G5654C	p.R1885T	.	.	.
KIF26B	55083	broad.mit.edu	36	1	243917112	243917112	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018012	exon12	c.C4204T	p.R1402W	.	.	.
OR2W5	441932	broad.mit.edu	36	1	245721261	245721261	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004698	exon1	c.A209C	p.D70A	.	.	.
OR1C1	26188	broad.mit.edu	36	1	245987958	245987958	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012353	exon1	c.C374T	p.A125V	.	.	.
WASF2	10163	broad.mit.edu	36	1	27613998	27613998	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006990	exon6	c.A584C	p.K195T	.	.	.
FGR	2268	broad.mit.edu	36	1	27814580	27814580	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042747	exon9	c.G970A	p.V324M	.	.	.
ZFYVE9	9372	broad.mit.edu	36	1	52542145	52542145	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007324	exon12	c.G3221A	p.R1074Q	.	.	.
NFIA	4774	broad.mit.edu	36	1	61644980	61644980	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145512	exon10	c.G1548A	p.T516T	.	.	.
AK5	26289	broad.mit.edu	36	1	77525345	77525345	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012093	exon2	c.G114T	p.K38N	.	.	.
COL24A1	255631	broad.mit.edu	36	1	86363524	86363524	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152890	exon3	c.G1083A	p.M361I	.	.	.
ZFP64	55734	broad.mit.edu	36	20	50202769	50202769	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018197	exon6	c.G1369A	p.D457N	.	.	.
KRTAP13-4	284827	broad.mit.edu	36	21	30724752	30724752	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181600	exon1	c.C288A	p.G96G	.	.	.
IFNAR1	3454	broad.mit.edu	36	21	33643690	33643690	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000629	exon8	c.A1114G	p.I372V	.	.	.
ZNF295	49854	broad.mit.edu	36	21	42286444	42286444	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001098403	exon3	c.C830T	p.P277L	.	.	.
KRTAP10-6	386674	broad.mit.edu	36	21	44836192	44836192	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198688	exon1	c.C602T	p.T201I	.	.	.
SEZ6L	23544	broad.mit.edu	36	22	25019086	25019086	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001184776	exon2	c.C809T	p.T270M	.	.	.
SUN2	25777	broad.mit.edu	36	22	37462268	37462268	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015374	exon18	c.G2104A	p.E702K	.	.	.
NUP50	10762	broad.mit.edu	36	22	43953003	43953003	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007172	exon5	c.T561C	p.F187F	.	.	.
HMGXB4	10042	broad.mit.edu	36	22	33991575	33991576	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	AG	AG	AG	-	AG	-	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001003681	exon5	c.1194_1195del	p.398_399del	.	.	.
ST6GAL2	84620	broad.mit.edu	36	2	106826208	106826208	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142351	exon2	c.C658T	p.R220C	.	.	.
CXCR4	7852	broad.mit.edu	36	2	136588968	136588968	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003467	exon2	c.C1000T	p.R334X	.	.	.
ACVR1C	130399	broad.mit.edu	36	2	158114961	158114961	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001111031	exon4	c.G584A	p.R195Q	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166763739	166763739	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002977	exon27	c.C5623T	p.R1875W	.	.	.
LRP2	4036	broad.mit.edu	36	2	169703449	169703449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004525	exon75	c.G13402A	p.V4468I	.	.	.
SLC39A10	57181	broad.mit.edu	36	2	196256845	196256845	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127257	exon3	c.C1186T	p.P396S	.	.	.
ALS2	57679	broad.mit.edu	36	2	202296068	202296068	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020919	exon23	c.C3645T	p.S1215S	.	.	.
GLB1L	79411	broad.mit.edu	36	2	219815827	219815827	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024506	exon4	c.C297G	p.S99R	.	.	.
OR6B3	150681	broad.mit.edu	36	2	240633949	240633949	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173351	exon1	c.T214C	p.W72R	.	.	.
CAD	790	broad.mit.edu	36	2	27310120	27310120	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004341	exon21	c.C3339T	p.S1113S	.	.	.
NRXN1	9378	broad.mit.edu	36	2	51108580	51108580	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135659	exon2	c.C336T	p.G112G	.	.	.
OTX1	5013	broad.mit.edu	36	2	63136908	63136908	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199770	exon5	c.T1018G	p.C340G	.	.	.
ID2	3398	broad.mit.edu	36	2	8739902	8739902	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002166	exon1	c.C156T	p.S52S	.	.	.
LYG1	129530	broad.mit.edu	36	2	99267310	99267310	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_174898	exon7	c.A563G	p.Y188C	.	.	.
IRAK2	3656	broad.mit.edu	36	3	10255577	10255577	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001570	exon12	c.C1619T	p.S540F	.	.	.
ATP2B2	491	broad.mit.edu	36	3	10357255	10357255	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001683	exon17	c.C2916T	p.H972H	.	.	.
CCDC39	339829	broad.mit.edu	36	3	181864400	181864400	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_181426	exon2	c.T159G	p.N53K	.	.	.
KCNH8	131096	broad.mit.edu	36	3	19270242	19270242	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144633	exon2	c.C169T	p.R57X	.	.	.
TOP2B	7155	broad.mit.edu	36	3	25643122	25643122	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001068	exon18	c.C2142A	p.F714L	.	.	.
SETD5	55209	broad.mit.edu	36	3	9487351	9487351	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080517	exon19	c.G2933A	p.R978Q	.	.	.
SLC10A7	84068	broad.mit.edu	36	4	147397517	147397518	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	.	.	.	.	.	.	.
POU4F2	5458	broad.mit.edu	36	4	147781226	147781226	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004575	exon2	c.G1046A	p.R349H	.	.	.
FBXO8	26269	broad.mit.edu	36	4	175420615	175420615	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012180	exon2	c.C204T	p.F68F	.	.	.
PCDHA7	56141	broad.mit.edu	36	5	140194580	140194580	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018910	exon1	c.C428T	p.A143V	.	.	.
PCDHA9	9752	broad.mit.edu	36	5	140210474	140210474	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014005	exon1	c.C2210T	p.P737L	.	.	.
PCDHB12	56124	broad.mit.edu	36	5	140570981	140570981	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018932	exon1	c.A2318G	p.N773S	.	.	.
SLC34A1	6569	broad.mit.edu	36	5	176757758	176757758	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003052	exon13	c.C1785T	p.R595R	.	.	.
SKP2	6502	broad.mit.edu	36	5	36202469	36202469	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032637	exon4	c.G484T	p.A162S	.	.	.
LIFR	3977	broad.mit.edu	36	5	38529471	38529471	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127671	exon14	c.G2059T	p.E687X	.	.	.
PRKAA1	5562	broad.mit.edu	36	5	40833986	40833986	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006251	exon1	c.G63A	p.R21R	.	.	.
BDP1	55814	broad.mit.edu	36	5	70793436	70793436	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018429	exon3	c.C526T	p.Q176X	.	.	.
APC	324	broad.mit.edu	36	5	112203250	112203250	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.4006delT	p.F1336fs	 APC,large_intestine,NS,Substitution - Missense,-2 	.	.
GJA1	2697	broad.mit.edu	36	6	121810777	121810777	+	Missense_Mutation	SNP	G	A	A	rs2227885	byFrequency	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000165	exon2	c.G1085A	p.R362Q	.	.	.
TAAR5	9038	broad.mit.edu	36	6	132951793	132951793	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003967	exon1	c.G726T	p.G242G	.	.	.
TIAM2	26230	broad.mit.edu	36	6	155492929	155492929	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012454	exon3	c.T880C	p.S294P	.	.	.
SLC22A1	6580	broad.mit.edu	36	6	160484667	160484667	+	Missense_Mutation	SNP	G	A	A	rs34295611	byFrequency	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003057	exon8	c.G1381A	p.V461I	.	.	.
BAT2	7916	broad.mit.edu	36	6	31707668	31707668	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004638	exon16	c.G3239A	p.R1080Q	.	.	.
TCTE1	202500	broad.mit.edu	36	6	44361931	44361931	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182539	exon3	c.G594A	p.P198P	.	.	.
DSP	1832	broad.mit.edu	36	6	7528048	7528048	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008844	exon24	c.C3757T	p.R1253C	.	.	.
ANKRD6	22881	broad.mit.edu	36	6	90397198	90397198	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014942	exon16	c.A1923C	p.P641P	.	.	.
MDN1	23195	broad.mit.edu	36	6	90414560	90414560	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014611	exon99	c.A16307C	p.H5436P	.	.	.
GIGYF1	64599	broad.mit.edu	36	7	100123546	100123546	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022574	exon2	c.G159T	p.E53D	.	.	.
PUS7	54517	broad.mit.edu	36	7	104922886	104922886	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019042	exon6	c.G781A	p.V261I	.	.	.
ZC3HAV1	56829	broad.mit.edu	36	7	138382997	138382997	+	Missense_Mutation	SNP	G	C	C	rs3735008	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020119	exon13	c.C2592G	p.F864L	.	.	.
TRPV6	55503	broad.mit.edu	36	7	142283741	142283741	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018646	exon7	c.G801T	p.Q267H	.	.	.
FAM126A	84668	broad.mit.edu	36	7	22952166	22952166	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032581	exon11	c.G1133A	p.G378E	.	.	.
HOXA11	3207	broad.mit.edu	36	7	27189143	27189143	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005523	exon2	c.C739T	p.P247S	.	.	.
NT5C3	51251	broad.mit.edu	36	7	33027467	33027467	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016489	exon6	c.G280A	p.A94T	.	.	.
CDK14	5218	broad.mit.edu	36	7	90451481	90451481	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012395	exon9	c.C976T	p.R326X	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98390713	98390713	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003496	exon39	c.G5712A	p.Q1904Q	.	.	.
RSPO2	340419	broad.mit.edu	36	8	109163961	109163961	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178565	exon2	c.C82T	p.R28C	.	.	.
ZHX1	11244	broad.mit.edu	36	8	124334884	124334884	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001017926	exon3	c.T2484C	p.G828G	.	.	.
KCNQ3	3786	broad.mit.edu	36	8	133210810	133210810	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004519	exon15	c.G2500A	p.A834T	.	.	.
TNFRSF10C	8794	broad.mit.edu	36	8	23030350	23030350	+	Missense_Mutation	SNP	C	A	A	rs61736406	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003841	exon5	c.C641A	p.T214N	.	.	.
TACC1	6867	broad.mit.edu	36	8	38797300	38797300	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006283	exon3	c.C1381T	p.R461C	.	.	.
RP1	6101	broad.mit.edu	36	8	55697282	55697282	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006269	exon3	c.G668T	p.G223V	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77938296	77938296	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024721	exon11	c.C9791T	p.P3264L	.	.	.
TNKS	8658	broad.mit.edu	36	8	9451094	9451094	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003747	exon1	c.C235T	p.R79X	.	.	.
INTS8	55656	broad.mit.edu	36	8	95961542	95961542	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017864	exon27	c.A2892G	p.T964T	.	.	.
ABCA1	19	broad.mit.edu	36	9	106634801	106634801	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005502	exon12	c.G1384A	p.D462N	.	.	.
OR1J4	26219	broad.mit.edu	36	9	124321801	124321801	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004452	exon1	c.C561A	p.L187L	.	.	.
OR1L8	138881	broad.mit.edu	36	9	124370089	124370089	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004454	exon1	c.G489A	p.L163L	.	.	.
FAM163B	642968	broad.mit.edu	36	9	135435081	135435081	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080515	exon1	c.G86A	p.R29Q	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89409783	89409783	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004938	exon3	c.C157T	p.R53W	.	.	.
ZCCHC5	203430	broad.mit.edu	36	X	77800226	77800226	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152694	exon2	c.G348A	p.A116A	.	.	.
ZMYM3	9203	broad.mit.edu	36	X	70386739	70386739	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001171162	exon6	c.1113delT	p.T371fs	.	.	.