Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
KIAA1217	56243	broad.mit.edu	36	10	24856892	24856893	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098500	exon15	c.2680_2681insA	p.E894fs	.	.	.
MTPAP	55149	broad.mit.edu	36	10	30644939	30644940	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018109	exon8	c.1345_1346insT	p.G449fs	.	.	.
C10orf2	56652	broad.mit.edu	36	10	102738684	102738684	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163812	exon1	c.G727A	p.A243T	.	.	.
GBF1	8729	broad.mit.edu	36	10	104130374	104130374	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199378	exon38	c.G5102A	p.R1701H	.	.	.
AS3MT	57412	broad.mit.edu	36	10	104622947	104622947	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020682	exon5	c.C425T	p.A142V	.	.	.
SORCS1	114815	broad.mit.edu	36	10	108379089	108379089	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052918	exon19	c.C2523T	p.I841I	.	.	.
TCF7L2	6934	broad.mit.edu	36	10	114915466	114915466	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146285	exon13	c.G1485A	p.S495S	.	.	.
USP6NL	9712	broad.mit.edu	36	10	11545274	11545274	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014688	exon15	c.C1659T	p.N553N	.	.	.
VWA2	340706	broad.mit.edu	36	10	116039113	116039113	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198496	exon12	c.G1997T	p.G666V	.	.	.
ATRNL1	26033	broad.mit.edu	36	10	116920910	116920910	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207303	exon8	c.T1218C	p.G406G	.	.	.
INPP5F	22876	broad.mit.edu	36	10	121547013	121547013	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014937	exon8	c.T919C	p.Y307H	.	.	.
DHTKD1	55526	broad.mit.edu	36	10	12163492	12163492	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018706	exon2	c.C170T	p.A57V	.	.	.
WDR11	55717	broad.mit.edu	36	10	122614594	122614594	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018117	exon6	c.G759T	p.L253L	.	.	.
MMP21	118856	broad.mit.edu	36	10	127454236	127454236	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147191	exon1	c.G145A	p.D49N	.	.	.
FANK1	92565	broad.mit.edu	36	10	127667169	127667169	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145235	exon3	c.G251A	p.R84H	.	.	.
MKI67	4288	broad.mit.edu	36	10	129811198	129811198	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145966	exon4	c.T224C	p.V75A	.	.	.
CUBN	8029	broad.mit.edu	36	10	17036521	17036521	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081	exon32	c.C4728T	p.R1576R	.	.	.
ARMC4	55130	broad.mit.edu	36	10	28141487	28141487	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018076	exon20	c.G3095A	p.R1032H	.	.	.
ARMC4	55130	broad.mit.edu	36	10	28191448	28191448	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018076	exon18	c.A2720G	p.N907S	.	.	.
SVIL	6840	broad.mit.edu	36	10	29861794	29861794	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021738	exon8	c.C1508A	p.P503Q	.	.	.
ZNF438	220929	broad.mit.edu	36	10	31174282	31174282	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143771	exon8	c.T2071A	p.W691R	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55252287	55252287	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142767	exon31	c.C5085T	p.A1695A	.	.	.
SPOCK2	9806	broad.mit.edu	36	10	73497458	73497458	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014767	exon8	c.C628T	p.R210W	.	.	.
TTC18	118491	broad.mit.edu	36	10	74708045	74708045	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145170	exon21	c.C2506T	p.Q836X	.	.	.
ZMIZ1	57178	broad.mit.edu	36	10	80728859	80728859	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020338	exon16	c.C1713T	p.G571G	.	.	.
LARP4B	23185	broad.mit.edu	36	10	848970	848970	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015155	exon17	c.G2113T	p.A705S	.	.	.
ALDH18A1	5832	broad.mit.edu	36	10	97370878	97370878	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017423	exon12	c.G1361A	p.R454H	.	.	.
EBF3	253738	broad.mit.edu	36	10	131556115	131556115	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005463	exon9	c.806delG	p.G269fs	.	.	.
C10orf71	118461	broad.mit.edu	36	10	50205036	50205036	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199459	exon4	c.2129delT	p.L710fs	.	.	.
DNA2	1763	broad.mit.edu	36	10	69852527	69852527	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080449	exon15	c.2593delT	p.S865fs	.	.	.
PPP3CB	5532	broad.mit.edu	36	10	74897318	74897318	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142353	exon9	c.1107delA	p.K369fs	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102546849	102546849	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon34	c.C5176T	p.R1726X	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102629295	102629295	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon66	c.A10114T	p.T3372S	.	.	.
DDI1	414301	broad.mit.edu	36	11	103413533	103413533	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001711	exon1	c.T773C	p.F258S	.	.	.
CADM1	23705	broad.mit.edu	36	11	114616288	114616288	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014333	exon2	c.A187C	p.S63R	.	.	.
DSCAML1	57453	broad.mit.edu	36	11	116908400	116908400	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020693	exon4	c.G739A	p.V247I	.	.	.
CBL	867	broad.mit.edu	36	11	118650841	118650841	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005188	exon5	c.T837G	p.A279A	.	.	.
POU2F3	25833	broad.mit.edu	36	11	119678220	119678220	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014352	exon6	c.T377C	p.L126P	.	.	.
POU2F3	25833	broad.mit.edu	36	11	119683408	119683408	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014352	exon9	c.G780A	p.P260P	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120036254	120036254	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014619	exon1	c.C17T	p.A6V	.	.	.
TECTA	7007	broad.mit.edu	36	11	120501488	120501488	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005422	exon7	c.C1471T	p.R491C	.	.	.
BLID	414899	broad.mit.edu	36	11	121491745	121491745	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001786	exon1	c.C96A	p.A32A	.	.	.
MICAL2	9645	broad.mit.edu	36	11	12204355	12204355	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014632	exon14	c.G1750T	p.A584S	.	.	.
GRAMD1B	57476	broad.mit.edu	36	11	122989462	122989462	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020716	exon15	c.C1684T	p.R562W	.	.	.
OR8D2	283160	broad.mit.edu	36	11	123694370	123694370	+	Nonstop_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002918	exon1	c.T934C	p.X312R	.	.	.
CDON	50937	broad.mit.edu	36	11	125396509	125396509	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016952	exon3	c.G193A	p.G65R	.	.	.
DCPS	28960	broad.mit.edu	36	11	125718433	125718433	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014026	exon5	c.G658A	p.A220T	.	.	.
KIRREL3	84623	broad.mit.edu	36	11	125799831	125799831	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032531	exon17	c.G2191A	p.V731I	.	.	.
KIRREL3	84623	broad.mit.edu	36	11	125821937	125821937	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032531	exon9	c.A1052G	p.D351G	.	.	.
BTBD10	84280	broad.mit.edu	36	11	13383792	13383792	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032320	exon7	c.A996C	p.E332D	.	.	.
KCNJ11	3767	broad.mit.edu	36	11	17365553	17365553	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000525	exon1	c.G662A	p.R221H	.	.	.
IGSF22	283284	broad.mit.edu	36	11	18692098	18692098	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173588	exon14	c.C1972T	p.R658C	.	.	.
NAV2	89797	broad.mit.edu	36	11	19692002	19692002	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145117	exon1	c.T185C	p.V62A	.	.	.
NAV2	89797	broad.mit.edu	36	11	19912343	19912343	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111018	exon7	c.G1785A	p.Q595Q	.	.	.
CHST1	8534	broad.mit.edu	36	11	45628713	45628713	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003654	exon4	c.C337T	p.R113W	.	.	.
F2	2147	broad.mit.edu	36	11	46707507	46707507	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000506	exon12	c.T1474G	p.L492V	.	.	.
PACSIN3	29763	broad.mit.edu	36	11	47156105	47156105	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016223	exon11	c.C1228T	p.R410C	.	.	.
OR52J3	119679	broad.mit.edu	36	11	5024625	5024625	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001916	exon1	c.T294G	p.A98A	.	.	.
OR5D13	390142	broad.mit.edu	36	11	55297619	55297619	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001967	exon1	c.A130G	p.N44D	.	.	.
OR5R1	219479	broad.mit.edu	36	11	55942045	55942045	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004744	exon1	c.G240T	p.K80N	.	.	.
MS4A6A	64231	broad.mit.edu	36	11	59703886	59703886	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152851	exon3	c.C276T	p.P92P	.	.	.
C11orf66	220004	broad.mit.edu	36	11	61014594	61014594	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145017	exon13	c.C1254A	p.S418R	.	.	.
NPAS4	266743	broad.mit.edu	36	11	65947893	65947893	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178864	exon7	c.C956T	p.A319V	.	.	.
DCHS1	8642	broad.mit.edu	36	11	6602126	6602126	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003737	exon21	c.G7357A	p.E2453K	.	.	.
FOLR2	2350	broad.mit.edu	36	11	71607321	71607321	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113536	exon2	c.A45G	p.V15V	.	.	.
CHRDL2	25884	broad.mit.edu	36	11	74092055	74092055	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015424	exon8	c.G889A	p.E297K	.	.	.
CYB5R2	51700	broad.mit.edu	36	11	7644327	7644327	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016229	exon8	c.C589T	p.L197F	.	.	.
RSF1	51773	broad.mit.edu	36	11	77090189	77090189	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016578	exon6	c.G1733A	p.R578H	.	.	.
EIF3F	8665	broad.mit.edu	36	11	7973435	7973435	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003754	exon7	c.A941G	p.Q314R	.	.	.
TUB	7275	broad.mit.edu	36	11	8075475	8075475	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177972	exon7	c.G812A	p.R271Q	.	.	.
C11orf82	220042	broad.mit.edu	36	11	82318964	82318964	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145018	exon5	c.G393A	p.T131T	.	.	.
PCF11	51585	broad.mit.edu	36	11	82558210	82558210	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015885	exon8	c.G3185T	p.R1062I	.	.	.
CCDC81	60494	broad.mit.edu	36	11	85796847	85796847	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021827	exon8	c.C730G	p.Q244E	.	.	.
ST5	6764	broad.mit.edu	36	11	8709093	8709093	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005418	exon6	c.C320T	p.S107L	.	.	.
MED17	9440	broad.mit.edu	36	11	93184782	93184782	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004268	exon12	c.G1860A	p.G620G	.	.	.
HEPHL1	341208	broad.mit.edu	36	11	93440468	93440468	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098672	exon5	c.G967A	p.V323I	.	.	.
CNTN5	53942	broad.mit.edu	36	11	99221037	99221037	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175566	exon5	c.G188T	p.R63L	.	.	.
CNTN5	53942	broad.mit.edu	36	11	99446425	99446425	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175566	exon10	c.C1000T	p.R334X	.	.	.
CCDC15	80071	broad.mit.edu	36	11	124350259	124350259	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025004	exon5	c.574delA	p.K192fs	.	.	.
PPM1H	57460	broad.mit.edu	36	12	61481940	61481941	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020700	exon3	c.679_680insC	p.T227fs	.	.	.
MYBPC1	4604	broad.mit.edu	36	12	100560421	100560421	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002465	exon11	c.G759C	p.Q253H	.	.	.
GNPTAB	79158	broad.mit.edu	36	12	100682840	100682840	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024312	exon13	c.G1986A	p.A662A	.	.	.
DRAM1	55332	broad.mit.edu	36	12	100826154	100826154	+	Silent	SNP	C	T	T	rs61748065	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018370	exon4	c.C402T	p.V134V	.	.	.
STAB2	55576	broad.mit.edu	36	12	102629418	102629418	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017564	exon40	c.G4328A	p.S1443N	.	.	.
HCFC2	29915	broad.mit.edu	36	12	103016288	103016288	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013320	exon13	c.C1778T	p.A593V	.	.	.
KLRC3	3823	broad.mit.edu	36	12	10459611	10459611	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007333	exon6	c.C637T	p.R213C	.	.	.
CCDC63	160762	broad.mit.edu	36	12	109829587	109829587	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152591	exon12	c.G1616A	p.R539Q	.	.	.
MAPKAPK5	8550	broad.mit.edu	36	12	110764943	110764943	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139078	exon1	c.A23G	p.D8G	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111105374	111105374	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109662	exon61	c.A10343G	p.D3448G	.	.	.
OAS1	4938	broad.mit.edu	36	12	111839830	111839830	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032409	exon5	c.T980C	p.L327P	.	.	.
MED13L	23389	broad.mit.edu	36	12	114928156	114928156	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015335	exon13	c.C2370T	p.G790G	.	.	.
CIT	11113	broad.mit.edu	36	12	118772461	118772461	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007174	exon5	c.T416G	p.V139G	.	.	.
ETV6	2120	broad.mit.edu	36	12	11928741	11928741	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001987	exon6	c.C1105T	p.R369W	.	.	.
VPS33A	65082	broad.mit.edu	36	12	121292921	121292921	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022916	exon8	c.A1057G	p.N353D	.	.	.
PITPNM2	57605	broad.mit.edu	36	12	122040363	122040363	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020845	exon17	c.C2655G	p.G885G	.	.	.
EIF2B1	1967	broad.mit.edu	36	12	122677587	122677587	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001414	exon5	c.C439T	p.R147X	.	.	.
TMEM132B	114795	broad.mit.edu	36	12	124400176	124400176	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052907	exon2	c.T278C	p.V93A	.	.	.
GOLGA3	2802	broad.mit.edu	36	12	131860865	131860865	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005895	exon23	c.G4258A	p.V1420M	.	.	.
PDE3A	5139	broad.mit.edu	36	12	20413778	20413778	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000921	exon1	c.C293T	p.A98V	.	.	.
RECQL	5965	broad.mit.edu	36	12	21519694	21519694	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032941	exon11	c.T1191A	p.N397K	.	.	.
KRAS	3845	broad.mit.edu	36	12	25271544	25271545	+	Missense_Mutation	DNP	GA	TT	TT	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon3	c.180_181AA	.	 KRAS,thyroid,NS,Substitution - Missense,+1 	.	.
H3F3C	440093	broad.mit.edu	36	12	31836129	31836129	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013699	exon1	c.C239T	p.T80I	.	.	.
KIF21A	55605	broad.mit.edu	36	12	38032008	38032008	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173465	exon11	c.G1511A	p.R504Q	.	.	.
KIF21A	55605	broad.mit.edu	36	12	38038426	38038426	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173465	exon8	c.G1036A	p.A346T	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42057517	42057517	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025003	exon32	c.C4913A	p.P1638H	.	.	.
FAIM2	23017	broad.mit.edu	36	12	48550666	48550666	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012306	exon12	c.G839A	p.R280Q	.	.	.
LASS5	91012	broad.mit.edu	36	12	48817867	48817867	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147190	exon6	c.C547A	p.L183I	.	.	.
CSRNP2	81566	broad.mit.edu	36	12	49743970	49743970	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030809	exon5	c.C1458T	p.P486P	.	.	.
GALNT6	11226	broad.mit.edu	36	12	50040828	50040828	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007210	exon7	c.A1111G	p.T371A	.	.	.
KRT82	3888	broad.mit.edu	36	12	51076097	51076097	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033033	exon7	c.A1255G	p.T419A	.	.	.
KRT6C	286887	broad.mit.edu	36	12	51149145	51149145	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173086	exon9	c.T1663A	p.S555T	.	.	.
KRT6C	286887	broad.mit.edu	36	12	51152161	51152161	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173086	exon2	c.G711A	p.S237S	.	.	.
KRT3	3850	broad.mit.edu	36	12	51470106	51470106	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057088	exon9	c.G1874A	p.R625H	.	.	.
NCKAP1L	3071	broad.mit.edu	36	12	53180605	53180605	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184976	exon3	c.C85T	p.R29C	.	.	.
NACA	4666	broad.mit.edu	36	12	55399892	55399892	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113203	exon3	c.C1689T	p.V563V	.	.	.
LRP1	4035	broad.mit.edu	36	12	55878356	55878356	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002332	exon59	c.C9433T	p.R3145C	.	.	.
TSFM	10102	broad.mit.edu	36	12	56476277	56476277	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172696	exon7	c.C685T	p.P229S	.	.	.
USP15	9958	broad.mit.edu	36	12	61001525	61001525	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006313	exon5	c.G489T	p.K163N	.	.	.
CD27	939	broad.mit.edu	36	12	6429722	6429722	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001242	exon3	c.C391T	p.R131W	.	.	.
NUP107	57122	broad.mit.edu	36	12	67369612	67369612	+	De_novo_Start_OutOfFrame	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020401	exon3	c.A133G	p.T45A	.	.	.
PTPRB	5787	broad.mit.edu	36	12	69276150	69276150	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109754	exon5	c.A1204G	p.T402A	.	.	.
PTPRR	5801	broad.mit.edu	36	12	69425950	69425950	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130846	exon2	c.C187T	p.R63X	.	.	.
THAP2	83591	broad.mit.edu	36	12	70354300	70354300	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031435	exon2	c.G122A	p.R41H	.	.	.
PPP1R12A	4659	broad.mit.edu	36	12	78706612	78706612	+	Missense_Mutation	SNP	T	C	C	rs61756420	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143886	exon21	c.A2488G	p.R830G	.	.	.
WNK1	65125	broad.mit.edu	36	12	836592	836592	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184985	exon5	c.T1316C	p.V439A	.	.	.
RIMKLB	57494	broad.mit.edu	36	12	8757823	8757823	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020734	exon3	c.G94A	p.A32T	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8890026	8890026	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144670	exon14	c.A1624G	p.S542G	.	.	.
RAD52	5893	broad.mit.edu	36	12	893479	893479	+	Missense_Mutation	SNP	G	A	A	rs4987207	byCluster;byFrequency;byHapMap	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134424	exon11	c.C1037T	p.S346L	.	.	.
LUM	4060	broad.mit.edu	36	12	90026104	90026104	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002345	exon2	c.T784C	p.S262P	.	.	.
PZP	5858	broad.mit.edu	36	12	9240254	9240254	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002864	exon10	c.C1031A	p.S344Y	.	.	.
NR2C1	7181	broad.mit.edu	36	12	93949283	93949283	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127362	exon11	c.A1366G	p.N456D	.	.	.
NR2C1	7181	broad.mit.edu	36	12	93976314	93976314	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127362	exon5	c.T447C	p.C149C	.	.	.
ELK3	2004	broad.mit.edu	36	12	95141489	95141489	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005230	exon2	c.T14C	p.I5T	.	.	.
UHRF1BP1L	23074	broad.mit.edu	36	12	98965989	98965989	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015054	exon18	c.C3835T	p.Q1279X	.	.	.
SETD1B	23067	broad.mit.edu	36	12	120727041	120727041	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015048	exon1	c.15delC	p.H5fs	.	.	.
ZNF268	10795	broad.mit.edu	36	12	132288938	132288938	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003415	exon6	c.593delA	p.Q198fs	.	.	.
ARID2	196528	broad.mit.edu	36	12	44526959	44526962	+	Frame_Shift_Del	DEL	ATAG	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	ATAG	ATAG	ATAG	-	ATAG	ATAG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152641	exon12	c.1552_1555del	p.518_519del	.	.	.
WNK1	65125	broad.mit.edu	36	12	838741	838743	+	In_Frame_Del	DEL	AGA	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	AGA	AGA	AGA	-	AGA	AGA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184985	exon6	c.1470_1472del	p.490_491del	.	.	.
GOLGA2B	55592	broad.mit.edu	36	12	99075126	99075126	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NALCN	259232	broad.mit.edu	36	13	100553642	100553642	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052867	exon26	c.C2939T	p.S980L	.	.	.
MYO16	23026	broad.mit.edu	36	13	108116373	108116373	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198950	exon2	c.G167A	p.R56H	.	.	.
TMCO3	55002	broad.mit.edu	36	13	113200700	113200700	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017905	exon3	c.C487A	p.Q163K	.	.	.
TMCO3	55002	broad.mit.edu	36	13	113249634	113249634	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017905	exon11	c.C1709T	p.T570M	.	.	.
TUBA3C	7278	broad.mit.edu	36	13	18649323	18649323	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006001	exon4	c.T800C	p.F267S	.	.	.
PARP4	143	broad.mit.edu	36	13	23950351	23950351	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006437	exon13	c.C1512T	p.D504D	.	.	.
PAN3	255967	broad.mit.edu	36	13	27732653	27732653	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175854	exon8	c.G1318A	p.A440T	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28499037	28499037	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001033602	exon1	c.G2232A	p.Q744Q	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28506053	28506053	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033602	exon2	c.G2267A	p.C756Y	.	.	.
B3GALTL	145173	broad.mit.edu	36	13	30741393	30741393	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194318	exon8	c.T639C	p.F213F	.	.	.
CCNA1	8900	broad.mit.edu	36	13	35905320	35905320	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111047	exon2	c.C127T	p.L43L	.	.	.
CCNA1	8900	broad.mit.edu	36	13	35910842	35910842	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111047	exon5	c.G599A	p.R200H	.	.	.
SMAD9	4093	broad.mit.edu	36	13	36351544	36351544	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005905	exon2	c.G283A	p.V95M	.	.	.
POSTN	10631	broad.mit.edu	36	13	37062596	37062596	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135934	exon4	c.C354T	p.D118D	.	.	.
ELF1	1997	broad.mit.edu	36	13	40405949	40405949	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172373	exon9	c.C1472T	p.A491V	.	.	.
ELF1	1997	broad.mit.edu	36	13	40413376	40413376	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172373	exon8	c.C937T	p.P313S	.	.	.
KBTBD7	84078	broad.mit.edu	36	13	40665362	40665362	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032138	exon1	c.G1032T	p.E344D	.	.	.
SUCLA2	8803	broad.mit.edu	36	13	47421628	47421628	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003850	exon9	c.C1219T	p.R407W	.	.	.
MLNR	2862	broad.mit.edu	36	13	48694468	48694468	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001507	exon2	c.C1193T	p.T398M	.	.	.
ARL11	115761	broad.mit.edu	36	13	49102664	49102664	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138450	exon2	c.C80T	p.T27M	.	.	.
C13orf1	57213	broad.mit.edu	36	13	49403206	49403206	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020456	exon2	c.G172A	p.A58T	.	.	.
TDRD3	81550	broad.mit.edu	36	13	60000515	60000515	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146071	exon11	c.G876A	p.Q292Q	.	.	.
KLHL1	57626	broad.mit.edu	36	13	69412323	69412323	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020866	exon4	c.A864G	p.A288A	.	.	.
DOCK9	23348	broad.mit.edu	36	13	98380508	98380508	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130050	exon3	c.C248T	p.A83V	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101552942	101552942	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001376	exon38	c.C7701T	p.V2567V	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104492990	104492990	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138420	exon5	c.C341T	p.T114M	.	.	.
PNP	4860	broad.mit.edu	36	14	20013210	20013210	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000270	exon5	c.C611T	p.A204V	.	.	.
OR10G3	26533	broad.mit.edu	36	14	21107966	21107966	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005465	exon1	c.C750T	p.T250T	.	.	.
CEBPE	1053	broad.mit.edu	36	14	22656687	22656687	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001805	exon2	c.C695T	p.T232M	.	.	.
MYH7	4625	broad.mit.edu	36	14	22954770	22954770	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000257	exon35	c.C5065T	p.R1689C	.	.	.
KHNYN	23351	broad.mit.edu	36	14	23971646	23971646	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015299	exon3	c.G1339A	p.V447M	.	.	.
PRKD1	5587	broad.mit.edu	36	14	29177797	29177797	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002742	exon5	c.G761C	p.G254A	.	.	.
ARHGAP5	394	broad.mit.edu	36	14	31630314	31630314	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001030055	exon2	c.C688T	p.R230X	.	.	.
AKAP6	9472	broad.mit.edu	36	14	32363202	32363202	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004274	exon13	c.G6432T	p.S2144S	.	.	.
RALGAPA1	253959	broad.mit.edu	36	14	35193346	35193346	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194301	exon29	c.A4067C	p.D1356A	.	.	.
FANCM	57697	broad.mit.edu	36	14	44692993	44692993	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020937	exon6	c.G1171A	p.D391N	.	.	.
TMX1	81542	broad.mit.edu	36	14	50780428	50780428	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030755	exon2	c.C257T	p.T86I	.	.	.
SYT16	83851	broad.mit.edu	36	14	61620750	61620750	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031914	exon5	c.G1518A	p.A506A	.	.	.
SPTB	6710	broad.mit.edu	36	14	64329616	64329616	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024858	exon13	c.C2518T	p.R840C	.	.	.
SLC39A9	55334	broad.mit.edu	36	14	68935914	68935914	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018375	exon1	c.C75A	p.P25P	.	.	.
SLC8A3	6547	broad.mit.edu	36	14	69704841	69704841	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033262	exon2	c.C52T	p.L18L	.	.	.
MLH3	27030	broad.mit.edu	36	14	74555408	74555408	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040108	exon12	c.C4119T	p.S1373S	.	.	.
SNW1	22938	broad.mit.edu	36	14	77274928	77274928	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012245	exon5	c.C479T	p.A160V	.	.	.
NRXN3	9369	broad.mit.edu	36	14	78251192	78251192	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004796	exon5	c.C882T	p.C294C	.	.	.
FLRT2	23768	broad.mit.edu	36	14	85158275	85158275	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013231	exon2	c.G664A	p.A222T	.	.	.
EML5	161436	broad.mit.edu	36	14	88276613	88276613	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183387	exon5	c.G582A	p.T194T	.	.	.
KCNK13	56659	broad.mit.edu	36	14	89720714	89720714	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022054	exon2	c.A841G	p.I281V	.	.	.
CCDC88C	440193	broad.mit.edu	36	14	90814084	90814084	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080414	exon29	c.C4993T	p.P1665S	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93158304	93158304	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020818	exon30	c.G4441T	p.G1481C	.	.	.
AK7	122481	broad.mit.edu	36	14	95945005	95945005	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152327	exon4	c.T472C	p.W158R	.	.	.
HSPA2	3306	broad.mit.edu	36	14	64077728	64077728	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021979	exon1	c.408delG	p.L136fs	.	.	.
CYFIP1	23191	broad.mit.edu	36	15	20506600	20506600	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014608	exon15	c.T1553C	p.V518A	.	.	.
ARHGAP11B	89839	broad.mit.edu	36	15	28706346	28706346	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039841	exon1	c.C31T	p.L11L	.	.	.
MTMR10	54893	broad.mit.edu	36	15	29056439	29056439	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017762	exon3	c.G133A	p.V45I	.	.	.
PGBD4	161779	broad.mit.edu	36	15	32183034	32183034	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152595	exon1	c.C1010T	p.P337L	.	.	.
LTK	4058	broad.mit.edu	36	15	39584781	39584781	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002344	exon15	c.T1842C	p.P614P	.	.	.
ZFP106	64397	broad.mit.edu	36	15	40530868	40530868	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022473	exon2	c.C825T	p.H275H	.	.	.
TGM7	116179	broad.mit.edu	36	15	41358699	41358699	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052955	exon11	c.C1747T	p.R583C	.	.	.
SEMA6D	80031	broad.mit.edu	36	15	45839808	45839808	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153619	exon3	c.C125T	p.P42L	.	.	.
MYEF2	50804	broad.mit.edu	36	15	46237535	46237535	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016132	exon9	c.C932T	p.S311F	.	.	.
MYEF2	50804	broad.mit.edu	36	15	46248199	46248199	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016132	exon2	c.A291G	p.P97P	.	.	.
GABPB1	2553	broad.mit.edu	36	15	48383511	48383511	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002041	exon3	c.C220T	p.P74S	.	.	.
WDR72	256764	broad.mit.edu	36	15	51676695	51676695	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182758	exon18	c.A3021G	p.I1007M	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52373427	52373427	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080534	exon9	c.G3861T	p.W1287C	.	.	.
AQP9	366	broad.mit.edu	36	15	56254508	56254508	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020980	exon4	c.C476T	p.A159V	.	.	.
GCNT3	9245	broad.mit.edu	36	15	57698381	57698381	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004751	exon3	c.G652C	p.V218L	.	.	.
PLEKHO2	80301	broad.mit.edu	36	15	62945021	62945021	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195059	exon5	c.A1204G	p.R402G	.	.	.
SNAPC5	10302	broad.mit.edu	36	15	64573871	64573871	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006049	exon3	c.C254T	p.T85M	.	.	.
STRA6	64220	broad.mit.edu	36	15	72261783	72261783	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199041	exon15	c.C1417A	p.L473I	.	.	.
HMG20A	10363	broad.mit.edu	36	15	75557744	75557744	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018200	exon9	c.G744T	p.E248D	.	.	.
STARD5	80765	broad.mit.edu	36	15	79392748	79392748	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181900	exon6	c.T546C	p.G182G	.	.	.
STARD5	80765	broad.mit.edu	36	15	79397813	79397813	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181900	exon5	c.T486G	p.P162P	.	.	.
TMC3	342125	broad.mit.edu	36	15	79418104	79418104	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080532	exon18	c.G2028T	p.V676V	.	.	.
FSD2	123722	broad.mit.edu	36	15	81252962	81252962	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007122	exon2	c.G235A	p.G79R	.	.	.
WHAMM	123720	broad.mit.edu	36	15	81296695	81296695	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080435	exon9	c.T1932A	p.P644P	.	.	.
ZNF592	9640	broad.mit.edu	36	15	83127047	83127047	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014630	exon4	c.T137C	p.I46T	.	.	.
ZNF592	9640	broad.mit.edu	36	15	83127624	83127624	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014630	exon4	c.C714T	p.F238F	.	.	.
HAPLN3	145864	broad.mit.edu	36	15	87225730	87225730	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178232	exon3	c.G355A	p.V119M	.	.	.
ANPEP	290	broad.mit.edu	36	15	88141869	88141869	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001150	exon15	c.A2098C	p.S700R	.	.	.
C15orf52	388115	broad.mit.edu	36	15	38419074	38419074	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207380	exon3	c.294delG	p.G98fs	.	.	.
B2M	567	broad.mit.edu	36	15	42791073	42791074	+	Frame_Shift_Del	DEL	CT	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004048	exon1	c.37_38del	p.13_13del	.	.	.
HAPLN3	145864	broad.mit.edu	36	15	87222284	87222284	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178232	exon5	c.1004delC	p.P335fs	.	.	.
ATF7IP2	80063	broad.mit.edu	36	16	10432613	10432613	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024997	exon2	c.A635G	p.K212R	.	.	.
RUNDC2A	84127	broad.mit.edu	36	16	12000668	12000668	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032167	exon2	c.T21C	p.N7N	.	.	.
NOMO1	23420	broad.mit.edu	36	16	14854922	14854922	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014287	exon8	c.C833T	p.S278L	.	.	.
IFT140	9742	broad.mit.edu	36	16	1556174	1556174	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014714	exon16	c.A1890C	p.Q630H	.	.	.
MYH11	4629	broad.mit.edu	36	16	15722944	15722944	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040114	exon33	c.G4435A	p.D1479N	.	.	.
IFT140	9742	broad.mit.edu	36	16	1573324	1573324	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014714	exon12	c.G1424A	p.R475Q	.	.	.
CP110	9738	broad.mit.edu	36	16	19455539	19455539	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014711	exon5	c.C1047T	p.T349T	.	.	.
DNAH3	55567	broad.mit.edu	36	16	21060173	21060173	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017539	exon4	c.C470A	p.P157H	.	.	.
PALB2	79728	broad.mit.edu	36	16	23554363	23554363	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024675	exon4	c.T1005C	p.N335N	.	.	.
PRKCB	5579	broad.mit.edu	36	16	23755090	23755090	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212535	exon1	c.G93A	p.V31V	.	.	.
KIAA0556	23247	broad.mit.edu	36	16	27693819	27693819	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015202	exon24	c.C4362T	p.D1454D	.	.	.
SBK1	388228	broad.mit.edu	36	16	28239171	28239171	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001024401	exon4	c.G703T	p.D235Y	.	.	.
APOB48R	55911	broad.mit.edu	36	16	28415307	28415307	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018690	exon3	c.C1417T	p.R473W	.	.	.
PRSS22	64063	broad.mit.edu	36	16	2843899	2843899	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022119	exon5	c.G685T	p.G229C	.	.	.
HIRIP3	8479	broad.mit.edu	36	16	29912730	29912730	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003609	exon4	c.A1237G	p.K413E	.	.	.
FAM57B	83723	broad.mit.edu	36	16	29945613	29945613	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031478	exon3	c.G262A	p.D88N	.	.	.
GDPD3	79153	broad.mit.edu	36	16	30031174	30031174	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024307	exon5	c.C437A	p.P146H	.	.	.
SRCAP	10847	broad.mit.edu	36	16	30626501	30626501	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006662	exon6	c.G600T	p.K200N	.	.	.
ITGAD	3681	broad.mit.edu	36	16	31337013	31337013	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005353	exon21	c.C2616T	p.N872N	.	.	.
NETO2	81831	broad.mit.edu	36	16	45677690	45677690	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018092	exon8	c.C945T	p.V315V	.	.	.
ADCY7	113	broad.mit.edu	36	16	48883228	48883228	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114	exon3	c.C456T	p.A152A	.	.	.
GPR97	222487	broad.mit.edu	36	16	56270682	56270682	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170776	exon5	c.T585C	p.A195A	.	.	.
CDH11	1009	broad.mit.edu	36	16	63539016	63539016	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001797	exon13	c.C2382T	p.D794D	.	.	.
CDH16	1014	broad.mit.edu	36	16	65503507	65503507	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004062	exon13	c.T1586C	p.V529A	.	.	.
CDH16	1014	broad.mit.edu	36	16	65504649	65504649	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004062	exon9	c.G940A	p.E314K	.	.	.
CTCF	10664	broad.mit.edu	36	16	66218081	66218081	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001191022	exon6	c.C496T	p.R166C	.	.	.
SMPD3	55512	broad.mit.edu	36	16	66963494	66963494	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018667	exon3	c.T92G	p.V31G	.	.	.
ZNF19	7567	broad.mit.edu	36	16	70070342	70070342	+	Missense_Mutation	SNP	G	A	A	rs17857322	byHapMap	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006961	exon4	c.C101T	p.A34V	.	.	.
CHST4	10164	broad.mit.edu	36	16	70128774	70128774	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166395	exon2	c.G693A	p.Q231Q	.	.	.
PKD1L2	114780	broad.mit.edu	36	16	79742925	79742926	+	Missense_Mutation	DNP	CG	GC	GC	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	CG	CG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052892	exon27	c.4500_4501GC	.	.	.	.
MBTPS1	8720	broad.mit.edu	36	16	82658879	82658879	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003791	exon16	c.G2122A	p.A708T	.	.	.
C16orf68	79091	broad.mit.edu	36	16	8643511	8643511	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024109	exon8	c.C853T	p.Q285X	.	.	.
ABAT	18	broad.mit.edu	36	16	8759129	8759129	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000663	exon6	c.G331A	p.A111T	.	.	.
GAS8	2622	broad.mit.edu	36	16	88626810	88626810	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001481	exon4	c.G472A	p.V158M	.	.	.
HCFC1R1	54985	broad.mit.edu	36	16	3013267	3013267	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017885	exon3	c.249delC	p.P83fs	.	.	.
NDRG4	65009	broad.mit.edu	36	16	57095362	57095362	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PSMC3IP	29893	broad.mit.edu	36	17	37978894	37978895	+	Frame_Shift_Ins	INS	-	CT	CT	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013290	exon6	c.462_463insAG	p.R154fs	.	.	.
TBC1D16	125058	broad.mit.edu	36	17	75538219	75538220	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019020	exon7	c.1298_1299insG	p.E433fs	.	.	.
MYH8	4626	broad.mit.edu	36	17	10250813	10250813	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002472	exon19	c.G2090T	p.R697M	.	.	.
MAP2K4	6416	broad.mit.edu	36	17	11925475	11925475	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003010	exon3	c.C296T	p.A99V	.	.	.
NCOR1	9611	broad.mit.edu	36	17	15876414	15876414	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190440	exon45	c.A6935G	p.Q2312R	.	.	.
TRPV2	51393	broad.mit.edu	36	17	16280848	16280848	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016113	exon15	c.C2215A	p.L739M	.	.	.
FLII	2314	broad.mit.edu	36	17	18089594	18089594	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002018	exon28	c.G3609T	p.E1203D	.	.	.
TBC1D28	254272	broad.mit.edu	36	17	18481909	18481909	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039397	exon9	c.G490A	p.G164R	.	.	.
FBXW10	10517	broad.mit.edu	36	17	18623031	18623031	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031456	exon14	c.C2851T	p.R951C	.	.	.
MFAP4	4239	broad.mit.edu	36	17	19229321	19229321	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198695	exon4	c.C352T	p.R118C	.	.	.
AKAP10	11216	broad.mit.edu	36	17	19780257	19780257	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007202	exon9	c.G1401T	p.R467S	.	.	.
PHF12	57649	broad.mit.edu	36	17	24259958	24259958	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033561	exon12	c.C2427T	p.N809N	.	.	.
PAFAH1B1	5048	broad.mit.edu	36	17	2517055	2517055	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000430	exon5	c.A212G	p.K71R	.	.	.
UTP6	55813	broad.mit.edu	36	17	27246119	27246119	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018428	exon3	c.A202T	p.I68F	.	.	.
FAM101B	359845	broad.mit.edu	36	17	293375	293375	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182705	exon2	c.G244T	p.G82C	.	.	.
ACACA	31	broad.mit.edu	36	17	32666066	32666066	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198834	exon25	c.A3183C	p.V1061V	.	.	.
SRCIN1	80725	broad.mit.edu	36	17	33974063	33974063	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025248	exon4	c.C358T	p.R120C	.	.	.
AOC3	8639	broad.mit.edu	36	17	38261847	38261847	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003734	exon4	c.T2046C	p.F682F	.	.	.
HIGD1B	51751	broad.mit.edu	36	17	40282202	40282202	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016438	exon2	c.G155A	p.R52H	.	.	.
KIF18B	146909	broad.mit.edu	36	17	40359890	40359890	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080443	exon14	c.G2368A	p.V790I	.	.	.
HEXIM2	124790	broad.mit.edu	36	17	40602240	40602240	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144608	exon4	c.C142T	p.R48W	.	.	.
ARHGAP27	201176	broad.mit.edu	36	17	40831113	40831113	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199282	exon10	c.G804A	p.Q268Q	.	.	.
ITGA3	3675	broad.mit.edu	36	17	45511592	45511592	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002204	exon20	c.C2554G	p.L852V	.	.	.
EME1	146956	broad.mit.edu	36	17	45813253	45813253	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166131	exon9	c.A1706G	p.Q569R	.	.	.
CACNA1G	8913	broad.mit.edu	36	17	46001600	46001600	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198382	exon3	c.A430G	p.K144E	.	.	.
CAMTA2	23125	broad.mit.edu	36	17	4818490	4818490	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015099	exon12	c.C1930T	p.R644X	.	.	.
EPX	8288	broad.mit.edu	36	17	53627480	53627480	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000502	exon6	c.G751A	p.V251I	.	.	.
CLTC	1213	broad.mit.edu	36	17	55098704	55098704	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004859	exon12	c.C1864A	p.L622I	.	.	.
USP32	84669	broad.mit.edu	36	17	55720731	55720731	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032582	exon5	c.A506G	p.Y169C	.	.	.
RGS9	8787	broad.mit.edu	36	17	60651904	60651904	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003835	exon18	c.G1730A	p.R577H	.	.	.
AIPL1	23746	broad.mit.edu	36	17	6279061	6279061	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033054	exon1	c.G88A	p.G30R	.	.	.
ABCA6	23460	broad.mit.edu	36	17	64586746	64586746	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080284	exon39	c.T4817C	p.M1606T	.	.	.
C17orf77	146723	broad.mit.edu	36	17	70100281	70100281	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152460	exon3	c.G501T	p.G167G	.	.	.
CDK3	1018	broad.mit.edu	36	17	71509720	71509720	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001258	exon4	c.G217A	p.E73K	.	.	.
TNK1	8711	broad.mit.edu	36	17	7232606	7232606	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003985	exon11	c.C1635A	p.S545R	.	.	.
TNK1	8711	broad.mit.edu	36	17	7233091	7233091	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003985	exon13	c.C1950A	p.L650L	.	.	.
TNRC6C	57690	broad.mit.edu	36	17	73558402	73558402	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018996	exon4	c.G1664A	p.G555D	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7638340	7638340	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020877	exon48	c.G7613A	p.R2538Q	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7661367	7661367	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020877	exon64	c.A9929G	p.D3310G	.	.	.
CHD3	1107	broad.mit.edu	36	17	7747878	7747878	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005852	exon24	c.G3738T	p.K1246N	.	.	.
ASPSCR1	79058	broad.mit.edu	36	17	77546033	77546033	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024083	exon5	c.C422T	p.T141M	.	.	.
C17orf68	80169	broad.mit.edu	36	17	8076956	8076956	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025099	exon11	c.G1938A	p.R646R	.	.	.
MYH10	4628	broad.mit.edu	36	17	8357874	8357874	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005964	exon20	c.G2475A	p.A825A	.	.	.
NTN1	9423	broad.mit.edu	36	17	9006935	9006935	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004822	exon3	c.G1099A	p.V367I	.	.	.
RCVRN	5957	broad.mit.edu	36	17	9749063	9749063	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002903	exon1	c.G160A	p.A54T	.	.	.
GAS7	8522	broad.mit.edu	36	17	9763723	9763723	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003644	exon8	c.A743G	p.D248G	.	.	.
KIF2B	84643	broad.mit.edu	36	17	49257013	49257013	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032559	exon1	c.1620delA	p.V540fs	.	.	.
NCRNA00188	125144	broad.mit.edu	36	17	16283708	16283708	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NPC1	4864	broad.mit.edu	36	18	19373408	19373408	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000271	exon19	c.G2820A	p.S940S	.	.	.
ZNF521	25925	broad.mit.edu	36	18	21060161	21060161	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015461	exon4	c.C1719T	p.S573S	.	.	.
FAM59A	64762	broad.mit.edu	36	18	28102665	28102665	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022751	exon6	c.C1795T	p.R599X	.	.	.
ASXL3	80816	broad.mit.edu	36	18	29579825	29579825	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030632	exon12	c.T6015A	p.T2005T	.	.	.
DLGAP1	9229	broad.mit.edu	36	18	3719202	3719202	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003809	exon4	c.C618T	p.C206C	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41777263	41777263	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020964	exon9	c.C1805T	p.P602L	.	.	.
ST8SIA5	29906	broad.mit.edu	36	18	42522778	42522778	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013305	exon4	c.C414T	p.G138G	.	.	.
SMAD4	4089	broad.mit.edu	36	18	46858774	46858774	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005359	exon12	c.T1598G	p.L533R	 SMAD4,large_intestine,NS,Substitution - Missense,+1 	.	.
ZFP161	7541	broad.mit.edu	36	18	5281118	5281118	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003409	exon3	c.C1089T	p.C363C	.	.	.
VPS4B	9525	broad.mit.edu	36	18	59229709	59229709	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004869	exon2	c.C110A	p.A37D	.	.	.
LAMA1	284217	broad.mit.edu	36	18	7000271	7000271	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon26	c.G3801A	p.K1267K	.	.	.
ZNF236	7776	broad.mit.edu	36	18	72760873	72760873	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007345	exon20	c.A3422G	p.Q1141R	.	.	.
DNMT1	1786	broad.mit.edu	36	19	10111386	10111386	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130823	exon34	c.G3914A	p.R1305H	.	.	.
KRI1	65095	broad.mit.edu	36	19	10529648	10529648	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023008	exon14	c.C1377T	p.N459N	.	.	.
DHPS	1725	broad.mit.edu	36	19	12651515	12651515	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001930	exon4	c.G513A	p.V171V	.	.	.
IL27RA	9466	broad.mit.edu	36	19	14023724	14023724	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004843	exon13	c.G1655A	p.R552H	.	.	.
IL27RA	9466	broad.mit.edu	36	19	14024010	14024010	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004843	exon14	c.G1819A	p.A607T	.	.	.
CYP4F3	4051	broad.mit.edu	36	19	15621902	15621902	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199209	exon7	c.G827A	p.R276H	.	.	.
OR10H4	126541	broad.mit.edu	36	19	15920953	15920953	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004465	exon1	c.A136G	p.I46V	.	.	.
MAST3	23031	broad.mit.edu	36	19	18096113	18096113	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015016	exon9	c.C795T	p.I265I	.	.	.
UPF1	5976	broad.mit.edu	36	19	18823987	18823987	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002911	exon6	c.T854C	p.V285A	.	.	.
THEG	51298	broad.mit.edu	36	19	326761	326761	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199202	exon1	c.C210T	p.A70A	.	.	.
FFAR3	2865	broad.mit.edu	36	19	40542358	40542358	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005304	exon2	c.C726T	p.N242N	.	.	.
SHD	56961	broad.mit.edu	36	19	4231205	4231205	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020209	exon1	c.G145A	p.A49T	.	.	.
HKR1	284459	broad.mit.edu	36	19	42545543	42545543	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181786	exon6	c.C1006T	p.R336X	.	.	.
CATSPERG	57828	broad.mit.edu	36	19	43543074	43543074	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021185	exon15	c.G1714A	p.A572T	.	.	.
PSMD8	5714	broad.mit.edu	36	19	43561813	43561813	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002812	exon4	c.G630A	p.T210T	.	.	.
GGN	199720	broad.mit.edu	36	19	43568676	43568676	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152657	exon3	c.G1066A	p.A356T	.	.	.
FBL	2091	broad.mit.edu	36	19	45021581	45021581	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001436	exon5	c.T483C	p.A161A	.	.	.
SEMA6B	10501	broad.mit.edu	36	19	4506541	4506541	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032108	exon7	c.C507T	p.S169S	.	.	.
ZNF780B	163131	broad.mit.edu	36	19	45232865	45232865	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005851	exon5	c.G1741A	p.G581R	.	.	.
CYP2A6	1548	broad.mit.edu	36	19	46046394	46046394	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000762	exon3	c.C458T	p.A153V	.	.	.
AXL	558	broad.mit.edu	36	19	46418385	46418385	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021913	exon2	c.G90A	p.T30T	.	.	.
DMRTC2	63946	broad.mit.edu	36	19	47045065	47045065	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040283	exon6	c.T656C	p.L219P	.	.	.
MEGF8	1954	broad.mit.edu	36	19	47532870	47532870	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001410	exon7	c.G1316A	p.R439Q	.	.	.
C19orf61	56006	broad.mit.edu	36	19	48927639	48927639	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019108	exon14	c.T1512C	p.D504D	.	.	.
ZNF285	26974	broad.mit.edu	36	19	49583714	49583714	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152354	exon4	c.G533A	p.R178H	.	.	.
EML2	24139	broad.mit.edu	36	19	50808732	50808732	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193269	exon21	c.C2172T	p.N724N	.	.	.
FOXA3	3171	broad.mit.edu	36	19	51059581	51059581	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004497	exon1	c.C27T	p.A9A	.	.	.
CABP5	56344	broad.mit.edu	36	19	53235789	53235789	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019855	exon3	c.T123C	p.D41D	.	.	.
DBP	1628	broad.mit.edu	36	19	53826055	53826055	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001352	exon4	c.C829T	p.R277W	.	.	.
DHDH	27294	broad.mit.edu	36	19	54131168	54131168	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014475	exon3	c.C270T	p.G90G	.	.	.
HRC	3270	broad.mit.edu	36	19	54348563	54348563	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002152	exon1	c.C1744T	p.P582S	.	.	.
NOSIP	51070	broad.mit.edu	36	19	54755038	54755038	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015953	exon4	c.T141C	p.C47C	.	.	.
MYH14	79784	broad.mit.edu	36	19	55447731	55447731	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077186	exon16	c.G1854A	p.W618X	.	.	.
SHANK1	50944	broad.mit.edu	36	19	55867141	55867141	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016148	exon21	c.C2620T	p.R874C	.	.	.
SAFB	6294	broad.mit.edu	36	19	5592840	5592840	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002967	exon4	c.C429T	p.S143S	.	.	.
ZNF611	81856	broad.mit.edu	36	19	57900833	57900833	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161501	exon5	c.T1080C	p.N360N	.	.	.
PRKCG	5582	broad.mit.edu	36	19	59087577	59087577	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002739	exon7	c.A689G	p.N230S	.	.	.
LAIR1	3903	broad.mit.edu	36	19	59558763	59558763	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021706	exon9	c.G739A	p.A247T	.	.	.
LILRB1	10859	broad.mit.edu	36	19	59837271	59837271	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081639	exon9	c.G1347A	p.S449S	.	.	.
NLRP7	199713	broad.mit.edu	36	19	60144180	60144180	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139176	exon3	c.G283A	p.G95R	.	.	.
GP6	51206	broad.mit.edu	36	19	60217940	60217940	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083899	exon8	c.C1185T	p.F395F	.	.	.
SYT5	6861	broad.mit.edu	36	19	60377797	60377797	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003180	exon8	c.G860A	p.G287D	.	.	.
CCDC106	29903	broad.mit.edu	36	19	60855806	60855806	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013301	exon6	c.G725A	p.R242H	.	.	.
NLRP5	126206	broad.mit.edu	36	19	61230586	61230586	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153447	exon7	c.G1175A	p.R392H	.	.	.
ZNF835	90485	broad.mit.edu	36	19	61868007	61868007	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005850	exon2	c.G438A	p.A146A	.	.	.
ZNF211	10520	broad.mit.edu	36	19	62844997	62844997	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198855	exon3	c.G1331A	p.R444Q	.	.	.
ZNF211	10520	broad.mit.edu	36	19	62845248	62845248	+	Missense_Mutation	SNP	C	A	A	rs12979532	byCluster;byHapMap	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198855	exon3	c.C1582A	p.R528S	.	.	.
ZNF551	90233	broad.mit.edu	36	19	62890020	62890020	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138347	exon3	c.G517A	p.A173T	.	.	.
ZNF135	7694	broad.mit.edu	36	19	63270100	63270100	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003436	exon5	c.C472T	p.P158S	.	.	.
ZNF446	55663	broad.mit.edu	36	19	63682888	63682888	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017908	exon5	c.G694A	p.G232S	.	.	.
CD70	970	broad.mit.edu	36	19	6537225	6537225	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001252	exon3	c.G388A	p.V130M	.	.	.
MUC16	94025	broad.mit.edu	36	19	8904449	8904449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024690	exon6	c.G36080A	p.R12027Q	.	.	.
OR7D4	125958	broad.mit.edu	36	19	9185990	9185990	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005191	exon1	c.C524T	p.P175L	.	.	.
ZNF440	126070	broad.mit.edu	36	19	11803525	11803525	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152357	exon4	c.534delA	p.G178fs	.	.	.
TRIM46	80128	broad.mit.edu	36	1	153423157	153423158	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025058	exon10	c.2147_2148insC	p.C716fs	.	.	.
MTR	4548	broad.mit.edu	36	1	235104674	235104675	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000254	exon24	c.2499_2500insA	p.I833fs	.	.	.
CELSR2	1952	broad.mit.edu	36	1	109615104	109615104	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001408	exon25	c.G7516T	p.G2506W	.	.	.
KCNA10	3744	broad.mit.edu	36	1	110862209	110862209	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005549	exon1	c.C724T	p.R242W	.	.	.
LRIG2	9860	broad.mit.edu	36	1	113468178	113468178	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014813	exon18	c.A3130G	p.R1044G	.	.	.
HIPK1	204851	broad.mit.edu	36	1	114312730	114312730	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198269	exon12	c.T1586C	p.V529A	.	.	.
DENND2C	163259	broad.mit.edu	36	1	114949103	114949103	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198459	exon8	c.G1459C	p.D487H	.	.	.
CASQ2	845	broad.mit.edu	36	1	116071204	116071204	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001232	exon6	c.G669T	p.E223D	.	.	.
MTHFR	4524	broad.mit.edu	36	1	11776613	11776613	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005957	exon9	c.G1468A	p.G490R	.	.	.
GDAP2	54834	broad.mit.edu	36	1	118227649	118227649	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017686	exon11	c.G1231A	p.D411N	.	.	.
ADAM30	11085	broad.mit.edu	36	1	120240030	120240030	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021794	exon1	c.C453A	p.A151A	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12305304	12305304	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018156	exon34	c.A7829G	p.D2610G	.	.	.
PRDM2	7799	broad.mit.edu	36	1	14015510	14015510	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012231	exon9	c.T5038C	p.Y1680H	.	.	.
PDE4DIP	9659	broad.mit.edu	36	1	143568969	143568969	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198832	exon41	c.G6124T	p.G2042C	.	.	.
POGZ	23126	broad.mit.edu	36	1	149667394	149667394	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145796	exon4	c.G403A	p.V135I	.	.	.
TDRKH	11022	broad.mit.edu	36	1	150014252	150014252	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083965	exon11	c.G1449A	p.G483G	.	.	.
FLG	2312	broad.mit.edu	36	1	150548074	150548074	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.C5912A	p.A1971E	.	.	.
FLG	2312	broad.mit.edu	36	1	150549437	150549437	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.T4549C	p.Y1517H	.	.	.
FLG	2312	broad.mit.edu	36	1	150550574	150550574	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.A3412G	p.T1138A	.	.	.
LCE2B	26239	broad.mit.edu	36	1	150926042	150926042	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014357	exon2	c.G99A	p.L33L	.	.	.
GON4L	54856	broad.mit.edu	36	1	154058798	154058798	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032292	exon4	c.C791T	p.A264V	.	.	.
ARHGEF2	9181	broad.mit.edu	36	1	154201487	154201487	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001162383	exon7	c.G640A	p.A214T	.	.	.
NES	10763	broad.mit.edu	36	1	154907131	154907131	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006617	exon4	c.C3473A	p.P1158H	.	.	.
FCRL5	83416	broad.mit.edu	36	1	155781424	155781424	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031281	exon4	c.C380A	p.A127E	.	.	.
CD1E	913	broad.mit.edu	36	1	156593290	156593290	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185107	exon5	c.C877T	p.R293C	.	.	.
NCSTN	23385	broad.mit.edu	36	1	158594613	158594613	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015331	exon17	c.C2058T	p.V686V	.	.	.
LRRC52	440699	broad.mit.edu	36	1	163780369	163780369	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005214	exon1	c.T212C	p.M71T	.	.	.
GNB1	2782	broad.mit.edu	36	1	1708707	1708707	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002074	exon11	c.A946G	p.S316G	.	.	.
SLC9A11	284525	broad.mit.edu	36	1	171770383	171770383	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178527	exon16	c.G1837T	p.G613X	.	.	.
ANKRD45	339416	broad.mit.edu	36	1	171894897	171894897	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198493	exon2	c.C284A	p.A95D	.	.	.
RFWD2	64326	broad.mit.edu	36	1	174321555	174321555	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022457	exon10	c.C1121T	p.T374I	.	.	.
ARPC5	10092	broad.mit.edu	36	1	181866362	181866362	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005717	exon3	c.A250G	p.I84V	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184389549	184389549	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon97	c.C15063T	p.Y5021Y	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184414230	184414230	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon104	c.G16003A	p.G5335S	.	.	.
KIAA1751	85452	broad.mit.edu	36	1	1893307	1893307	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080484	exon9	c.C860T	p.A287V	.	.	.
ZBTB41	360023	broad.mit.edu	36	1	195424113	195424113	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194314	exon4	c.G1478A	p.C493Y	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196967387	196967387	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080921	exon15	c.T1394C	p.M465T	.	.	.
KIF21B	23046	broad.mit.edu	36	1	199244615	199244615	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017596	exon3	c.G352A	p.A118T	.	.	.
CHIT1	1118	broad.mit.edu	36	1	201459278	201459278	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003465	exon5	c.G448A	p.V150I	.	.	.
NENF	29937	broad.mit.edu	36	1	210682559	210682559	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013349	exon2	c.G207T	p.K69N	.	.	.
CENPF	1063	broad.mit.edu	36	1	212885013	212885013	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016343	exon13	c.T5477C	p.I1826T	.	.	.
USH2A	7399	broad.mit.edu	36	1	214563540	214563540	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon8	c.G1449A	p.T483T	.	.	.
WDR26	80232	broad.mit.edu	36	1	222678861	222678861	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025160	exon4	c.G746A	p.R249H	.	.	.
PSEN2	5664	broad.mit.edu	36	1	225144440	225144440	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000447	exon9	c.C869A	p.P290H	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231256639	231256639	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014801	exon25	c.G4349A	p.R1450Q	.	.	.
KIAA1804	84451	broad.mit.edu	36	1	231556280	231556280	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032435	exon3	c.C1091T	p.P364L	.	.	.
KCNK1	3775	broad.mit.edu	36	1	231869338	231869338	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002245	exon2	c.C730T	p.L244F	.	.	.
NID1	4811	broad.mit.edu	36	1	234223765	234223765	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002508	exon13	c.G2558A	p.R853Q	.	.	.
OPN3	23596	broad.mit.edu	36	1	239824605	239824605	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014322	exon4	c.C957T	p.S319S	.	.	.
GALE	2582	broad.mit.edu	36	1	23995957	23995957	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000403	exon8	c.C705A	p.G235G	.	.	.
OR2T11	127077	broad.mit.edu	36	1	246856650	246856650	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001964	exon1	c.C403T	p.R135C	.	.	.
SH3BP5L	80851	broad.mit.edu	36	1	247073876	247073876	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030645	exon6	c.C646T	p.R216W	.	.	.
SH3BP5L	80851	broad.mit.edu	36	1	247075432	247075432	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030645	exon5	c.G376A	p.A126T	.	.	.
SRRM1	10250	broad.mit.edu	36	1	24848100	24848100	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005839	exon4	c.A398G	p.Q133R	.	.	.
TMEM57	55219	broad.mit.edu	36	1	25657665	25657665	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018202	exon6	c.A849G	p.I283M	.	.	.
CNKSR1	10256	broad.mit.edu	36	1	26383151	26383151	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006314	exon10	c.G858A	p.T286T	.	.	.
XKR8	55113	broad.mit.edu	36	1	28166012	28166012	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018053	exon3	c.C902T	p.A301V	.	.	.
SFPQ	6421	broad.mit.edu	36	1	35427524	35427524	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005066	exon5	c.T1462C	p.Y488H	.	.	.
THRAP3	9967	broad.mit.edu	36	1	36524719	36524719	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005119	exon4	c.C301T	p.R101X	.	.	.
NFYC	4802	broad.mit.edu	36	1	41001226	41001226	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014223	exon7	c.A641G	p.Q214R	.	.	.
TIE1	7075	broad.mit.edu	36	1	43549977	43549977	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005424	exon10	c.G1382A	p.R461H	.	.	.
CDC20	991	broad.mit.edu	36	1	43599101	43599101	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001255	exon8	c.A959T	p.D320V	.	.	.
DMBX1	127343	broad.mit.edu	36	1	46750429	46750429	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172225	exon4	c.G810A	p.A270A	.	.	.
ORC1	4998	broad.mit.edu	36	1	52631815	52631815	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190818	exon6	c.G970A	p.A324T	.	.	.
USP24	23358	broad.mit.edu	36	1	55379916	55379916	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015306	exon24	c.C2711T	p.A904V	.	.	.
OMA1	115209	broad.mit.edu	36	1	58719338	58719338	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145243	exon9	c.T1462C	p.S488P	.	.	.
INADL	10207	broad.mit.edu	36	1	62035649	62035649	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176877	exon11	c.T1363C	p.S455P	.	.	.
SRSF11	9295	broad.mit.edu	36	1	70466714	70466714	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004768	exon3	c.A225G	p.S75S	.	.	.
MSH4	4438	broad.mit.edu	36	1	76121910	76121910	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002440	exon15	c.T1923G	p.T641T	.	.	.
PTGFR	5737	broad.mit.edu	36	1	78731601	78731601	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000959	exon2	c.C585A	p.D195E	.	.	.
FNBP1L	54874	broad.mit.edu	36	1	93782255	93782255	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024948	exon10	c.C994A	p.P332T	.	.	.
DNTTIP2	30836	broad.mit.edu	36	1	94114789	94114789	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014597	exon2	c.G1290A	p.A430A	.	.	.
DPYD	1806	broad.mit.edu	36	1	97812062	97812062	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000110	exon11	c.G1181A	p.R394Q	.	.	.
PHTF1	10745	broad.mit.edu	36	1	114068926	114068926	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006608	exon6	c.601delT	p.W201fs	.	.	.
ASPM	259266	broad.mit.edu	36	1	195339855	195339855	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018136	exon18	c.5149delA	p.I1717X	.	.	.
ABCB10	23456	broad.mit.edu	36	1	227721229	227721231	+	In_Frame_Del	DEL	AGA	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	AGA	AGA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012089	exon12	c.1965_1967del	p.655_656del	.	.	.
C20orf3	57136	broad.mit.edu	36	20	24897598	24897598	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020531	exon8	c.G971A	p.R324H	.	.	.
ZNF337	26152	broad.mit.edu	36	20	25604024	25604024	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015655	exon5	c.G1900T	p.G634W	.	.	.
BCL2L1	598	broad.mit.edu	36	20	29717468	29717468	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138578	exon3	c.C647T	p.T216M	.	.	.
SRC	6714	broad.mit.edu	36	20	35458061	35458061	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005417	exon8	c.C636T	p.S212S	.	.	.
RALGAPB	57148	broad.mit.edu	36	20	36603144	36603144	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020336	exon18	c.G2609T	p.G870V	.	.	.
TOP1	7150	broad.mit.edu	36	20	39142221	39142221	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003286	exon6	c.C418T	p.R140X	.	.	.
CHD6	84181	broad.mit.edu	36	20	39595459	39595459	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032221	exon3	c.G198T	p.E66D	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40144068	40144068	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133170	exon31	c.T4197G	p.N1399K	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40182007	40182007	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133170	exon21	c.C2923T	p.H975Y	.	.	.
WFDC12	128488	broad.mit.edu	36	20	43185928	43185928	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080869	exon3	c.C309T	p.S103S	.	.	.
PREX1	57580	broad.mit.edu	36	20	46692411	46692411	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020820	exon28	c.C3625A	p.R1209R	.	.	.
PREX1	57580	broad.mit.edu	36	20	46699488	46699488	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020820	exon25	c.G3062A	p.C1021Y	.	.	.
CSE1L	1434	broad.mit.edu	36	20	47144164	47144164	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001316	exon23	c.C2528T	p.A843V	.	.	.
C20orf107	388799	broad.mit.edu	36	20	54544736	54544736	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013646	exon2	c.C351T	p.N117N	.	.	.
CHGB	1114	broad.mit.edu	36	20	5845522	5845522	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001819	exon3	c.C147T	p.S49S	.	.	.
PSMA7	5688	broad.mit.edu	36	20	60147577	60147577	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002792	exon4	c.C420A	p.G140G	.	.	.
ANKRD5	63926	broad.mit.edu	36	20	9967237	9967237	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198798	exon2	c.A288C	p.S96S	.	.	.
TTI1	9675	broad.mit.edu	36	20	36061027	36061027	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014657	exon6	c.2770delC	p.L924fs	.	.	.
RBPJL	11317	broad.mit.edu	36	20	43374437	43374437	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014276	exon6	c.607delA	p.K203fs	.	.	.
ZNF217	7764	broad.mit.edu	36	20	51628324	51628324	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006526	exon2	c.1439delT	p.F480fs	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31430123	31430123	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003253	exon24	c.C3882T	p.F1294F	.	.	.
SFRS15	57466	broad.mit.edu	36	21	31966378	31966378	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145444	exon19	c.G2604A	p.P868P	.	.	.
TTC3	7267	broad.mit.edu	36	21	37490064	37490064	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001894	exon42	c.G5436T	p.Q1812H	.	.	.
MX1	4599	broad.mit.edu	36	21	41735575	41735575	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144925	exon12	c.C793T	p.R265W	.	.	.
RIPK4	54101	broad.mit.edu	36	21	42035016	42035016	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020639	exon8	c.G1406A	p.R469H	.	.	.
KRTAP10-6	386674	broad.mit.edu	36	21	44835760	44835760	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198688	exon1	c.G1034A	p.C345Y	.	.	.
FAM3B	54097	broad.mit.edu	36	21	41616711	41616711	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SMTN	6525	broad.mit.edu	36	22	29817710	29817711	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006932	exon11	c.1509_1510insG	p.S503fs	.	.	.
CCT8L2	150160	broad.mit.edu	36	22	15452504	15452504	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014406	exon1	c.G937A	p.V313M	.	.	.
CECR1	51816	broad.mit.edu	36	22	16042736	16042736	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177405	exon6	c.C693A	p.L231L	.	.	.
DGCR8	54487	broad.mit.edu	36	22	18457318	18457318	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190326	exon4	c.G1007A	p.G336E	.	.	.
BCR	613	broad.mit.edu	36	22	21967323	21967323	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004327	exon16	c.T2993C	p.M998T	.	.	.
GGT1	2678	broad.mit.edu	36	22	23340828	23340828	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	A	Unknown	Valid	Germline	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013430	exon6	c.G250A	p.G84S	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24672203	24672203	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032608	exon35	c.G5618A	p.R1873Q	.	.	.
SEC14L4	284904	broad.mit.edu	36	22	29217908	29217908	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161368	exon10	c.G824T	p.R275M	.	.	.
LARGE	9215	broad.mit.edu	36	22	32330492	32330492	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133642	exon5	c.C544A	p.L182M	.	.	.
TMPRSS6	164656	broad.mit.edu	36	22	35799566	35799566	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153609	exon13	c.G1534T	p.G512W	.	.	.
CACNA1I	8911	broad.mit.edu	36	22	38388790	38388790	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021096	exon18	c.G3436A	p.E1146K	.	.	.
SULT4A1	25830	broad.mit.edu	36	22	42560922	42560922	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014351	exon5	c.C534T	p.H178H	.	.	.
UPK3A	7380	broad.mit.edu	36	22	44061849	44061849	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006953	exon3	c.C341T	p.P114L	.	.	.
BRD1	23774	broad.mit.edu	36	22	48555352	48555352	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014577	exon11	c.G2884A	p.V962I	.	.	.
ZBED4	9889	broad.mit.edu	36	22	48664360	48664360	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014838	exon2	c.C1046T	p.P349L	.	.	.
FLJ39582	439931	broad.mit.edu	36	22	19687285	19687285	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MAP4K4	9448	broad.mit.edu	36	2	101859960	101859960	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145687	exon25	c.A2789C	p.K930T	.	.	.
BUB1	699	broad.mit.edu	36	2	111132713	111132713	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004336	exon12	c.G1356A	p.T452T	.	.	.
IL1A	3552	broad.mit.edu	36	2	113252145	113252145	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000575	exon6	c.G505T	p.G169C	.	.	.
NTSR2	23620	broad.mit.edu	36	2	11716208	11716208	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012344	exon4	c.G1081A	p.V361M	.	.	.
CLASP1	23332	broad.mit.edu	36	2	121875555	121875555	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142274	exon27	c.G2816T	p.R939M	.	.	.
ERCC3	2071	broad.mit.edu	36	2	127760908	127760908	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000122	exon8	c.G1183A	p.D395N	.	.	.
TUBA3E	112714	broad.mit.edu	36	2	130667869	130667869	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207312	exon4	c.G1016A	p.R339H	.	.	.
CCDC115	84317	broad.mit.edu	36	2	130816083	130816083	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032357	exon1	c.C86T	p.T29M	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141382059	141382059	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon22	c.C3377T	p.S1126L	.	.	.
ACVR2A	92	broad.mit.edu	36	2	148397014	148397014	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001616	exon9	c.T1080C	p.V360V	.	.	.
NEB	4703	broad.mit.edu	36	2	152116499	152116499	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon129	c.C19943T	p.S6648L	.	.	.
NBAS	51594	broad.mit.edu	36	2	15388182	15388182	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015909	exon36	c.A4338G	p.R1446R	.	.	.
LY75	4065	broad.mit.edu	36	2	160417030	160417030	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198760	exon21	c.G2811A	p.S937S	.	.	.
PLA2R1	22925	broad.mit.edu	36	2	160506623	160506623	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007366	exon30	c.G4304A	p.R1435Q	.	.	.
KCNH7	90134	broad.mit.edu	36	2	163069359	163069359	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173162	exon5	c.T947A	p.L316H	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165896288	165896288	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040143	exon13	c.G2352A	p.T784T	.	.	.
SCN7A	6332	broad.mit.edu	36	2	166997257	166997257	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002976	exon15	c.T2409A	p.D803E	.	.	.
LRP2	4036	broad.mit.edu	36	2	169811734	169811734	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon21	c.G2917A	p.A973T	.	.	.
LRP2	4036	broad.mit.edu	36	2	169847722	169847722	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon10	c.C1078A	p.Q360K	.	.	.
MYO3B	140469	broad.mit.edu	36	2	170948493	170948493	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171642	exon12	c.C1213T	p.R405C	.	.	.
TLK1	9874	broad.mit.edu	36	2	171611053	171611053	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012290	exon11	c.G1046A	p.R349H	.	.	.
OSBPL6	114880	broad.mit.edu	36	2	178905724	178905724	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032523	exon7	c.G483C	p.L161F	.	.	.
TTN	7273	broad.mit.edu	36	2	179143018	179143018	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.C48891T	p.C16297C	.	.	.
TTN	7273	broad.mit.edu	36	2	179349271	179349271	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon28	c.G5565T	p.G1855G	.	.	.
MYT1L	23040	broad.mit.edu	36	2	1822130	1822130	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015025	exon21	c.G2872A	p.D958N	.	.	.
SDPR	8436	broad.mit.edu	36	2	192409004	192409004	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004657	exon2	c.G1168A	p.A390T	.	.	.
ANKRD44	91526	broad.mit.edu	36	2	197586485	197586485	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195144	exon18	c.C1919A	p.A640D	.	.	.
MPP4	58538	broad.mit.edu	36	2	202260324	202260324	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033066	exon5	c.C295T	p.R99C	.	.	.
ALS2	57679	broad.mit.edu	36	2	202277452	202277452	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020919	exon32	c.C4808T	p.P1603L	.	.	.
FZD7	8324	broad.mit.edu	36	2	202609088	202609088	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003507	exon1	c.C1473T	p.Y491Y	.	.	.
NDUFS1	4719	broad.mit.edu	36	2	206722893	206722893	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005006	exon4	c.C155A	p.A52D	.	.	.
PIKFYVE	200576	broad.mit.edu	36	2	208923014	208923014	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015040	exon36	c.C5396T	p.T1799I	.	.	.
PTH2R	5746	broad.mit.edu	36	2	209023750	209023750	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005048	exon8	c.T885G	p.A295A	.	.	.
SPAG16	79582	broad.mit.edu	36	2	214983194	214983194	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024532	exon16	c.C1806T	p.H602H	.	.	.
VWC2L	402117	broad.mit.edu	36	2	215009663	215009663	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080500	exon3	c.C456T	p.C152C	.	.	.
FN1	2335	broad.mit.edu	36	2	216007741	216007741	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212476	exon2	c.G200A	p.R67Q	.	.	.
CXCR1	3577	broad.mit.edu	36	2	218737954	218737954	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000634	exon2	c.G226A	p.V76I	.	.	.
PLCD4	84812	broad.mit.edu	36	2	219202540	219202540	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032726	exon8	c.C1029A	p.S343R	.	.	.
GMPPA	29926	broad.mit.edu	36	2	220077103	220077103	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_205847	exon7	c.G544A	p.G182S	.	.	.
OBSL1	23363	broad.mit.edu	36	2	220141237	220141237	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173431	exon2	c.G1066A	p.G356R	.	.	.
ACSL3	2181	broad.mit.edu	36	2	223492048	223492048	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004457	exon7	c.G689A	p.R230H	.	.	.
IRS1	3667	broad.mit.edu	36	2	227370329	227370329	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005544	exon1	c.G1370A	p.R457H	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228589702	228589702	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142644	exon7	c.C4112T	p.P1371L	.	.	.
TRIP12	9320	broad.mit.edu	36	2	230362641	230362641	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004238	exon30	c.C4400T	p.P1467L	.	.	.
NCL	4691	broad.mit.edu	36	2	232033820	232033820	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005381	exon4	c.C615A	p.D205E	.	.	.
DIS3L2	129563	broad.mit.edu	36	2	232906842	232906842	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152383	exon17	c.C2059T	p.R687W	.	.	.
NGEF	25791	broad.mit.edu	36	2	233458300	233458300	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114090	exon8	c.C1095T	p.G365G	.	.	.
AGAP1	116987	broad.mit.edu	36	2	236372857	236372857	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037131	exon8	c.G909A	p.T303T	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237940129	237940129	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057166	exon8	c.G3619T	p.E1207X	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237954620	237954620	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057166	exon3	c.C353T	p.T118M	.	.	.
MFSD2B	388931	broad.mit.edu	36	2	24100542	24100542	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080473	exon13	c.G1387A	p.A463T	.	.	.
CAD	790	broad.mit.edu	36	2	27314185	27314185	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004341	exon29	c.C4659T	p.A1553A	.	.	.
IFT172	26160	broad.mit.edu	36	2	27525748	27525748	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015662	exon39	c.G4228A	p.V1410M	.	.	.
SLC4A1AP	22950	broad.mit.edu	36	2	27741517	27741517	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018158	exon2	c.A872G	p.Q291R	.	.	.
BRE	9577	broad.mit.edu	36	2	28414875	28414875	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199194	exon13	c.A1143G	p.G381G	.	.	.
C2orf71	388939	broad.mit.edu	36	2	29148985	29148985	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029883	exon1	c.C1647T	p.S549S	.	.	.
ALK	238	broad.mit.edu	36	2	29394674	29394674	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004304	exon8	c.G1647T	p.E549D	.	.	.
XDH	7498	broad.mit.edu	36	2	31423933	31423933	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000379	exon29	c.G3235A	p.A1079T	.	.	.
SLC30A6	55676	broad.mit.edu	36	2	32298794	32298794	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193513	exon15	c.A1014G	p.S338S	.	.	.
HEATR5B	54497	broad.mit.edu	36	2	37108692	37108692	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019024	exon24	c.G3731A	p.R1244H	.	.	.
FBXO11	80204	broad.mit.edu	36	2	47890330	47890330	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190274	exon20	c.G2359A	p.A787T	.	.	.
FBXO11	80204	broad.mit.edu	36	2	47913095	47913095	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190274	exon11	c.C1295T	p.A432V	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50576601	50576601	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135659	exon16	c.G3136C	p.D1046H	.	.	.
ERLEC1	27248	broad.mit.edu	36	2	53879691	53879691	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015701	exon6	c.G494A	p.R165Q	.	.	.
KIAA1841	84542	broad.mit.edu	36	2	61152308	61152308	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032506	exon4	c.T214C	p.S72P	.	.	.
USP34	9736	broad.mit.edu	36	2	61475513	61475513	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014709	exon5	c.G732A	p.A244A	.	.	.
EHBP1	23301	broad.mit.edu	36	2	63059891	63059891	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142614	exon14	c.G2525A	p.R842Q	.	.	.
MDH1	4190	broad.mit.edu	36	2	63679916	63679916	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005917	exon5	c.C484T	p.R162X	.	.	.
BMP10	27302	broad.mit.edu	36	2	68946508	68946508	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014482	exon2	c.C1034A	p.P345H	.	.	.
ANTXR1	84168	broad.mit.edu	36	2	69205266	69205266	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053034	exon12	c.C938T	p.T313I	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73682071	73682071	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015120	exon19	c.G12111T	p.Q4037H	.	.	.
SMYD1	150572	broad.mit.edu	36	2	88187009	88187009	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198274	exon8	c.T1032C	p.A344A	.	.	.
C2orf51	200523	broad.mit.edu	36	2	88607079	88607079	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152670	exon3	c.C69T	p.V23V	.	.	.
LOC285033	285033	broad.mit.edu	36	2	96269992	96269992	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037228	exon1	c.C204T	p.N68N	.	.	.
TMEM131	23505	broad.mit.edu	36	2	97797182	97797182	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015348	exon14	c.C1394T	p.A465V	.	.	.
AFF3	3899	broad.mit.edu	36	2	99548513	99548513	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025108	exon19	c.A3062G	p.E1021G	.	.	.
SCN7A	6332	broad.mit.edu	36	2	167042220	167042220	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002976	exon2	c.233delA	p.N78fs	.	.	.
DYNC1I2	1781	broad.mit.edu	36	2	172257585	172257585	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001378	exon3	c.161delA	p.E54fs	.	.	.
GMPPA	29926	broad.mit.edu	36	2	220074493	220074493	+	Frame_Shift_Del	DEL	C	-	-	rs34873891	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_205847	exon4	c.190delC	p.P64fs	.	.	.
FANCD2	2177	broad.mit.edu	36	3	10109979	10109979	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033084	exon39	c.G3860T	p.S1287I	.	.	.
TBC1D23	55773	broad.mit.edu	36	3	101512001	101512001	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199198	exon14	c.C1478T	p.A493V	.	.	.
ATP2B2	491	broad.mit.edu	36	3	10362187	10362187	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001683	exon15	c.G2449A	p.V817I	.	.	.
CCDC80	151887	broad.mit.edu	36	3	113840649	113840649	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199511	exon2	c.C794A	p.P265H	.	.	.
BOC	91653	broad.mit.edu	36	3	114485097	114485097	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033254	exon16	c.G2581A	p.V861I	.	.	.
ZBTB20	26137	broad.mit.edu	36	3	115540828	115540828	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164343	exon12	c.G1721T	p.S574I	.	.	.
ARHGAP31	57514	broad.mit.edu	36	3	120611087	120611087	+	Missense_Mutation	SNP	C	T	T	rs61744178	by1000genomes	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020754	exon11	c.C1700T	p.P567L	.	.	.
ARHGAP31	57514	broad.mit.edu	36	3	120615987	120615987	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020754	exon12	c.C2521A	p.P841T	.	.	.
CCDC14	64770	broad.mit.edu	36	3	125132663	125132663	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022757	exon11	c.T1775G	p.V592G	.	.	.
ZXDC	79364	broad.mit.edu	36	3	127663744	127663744	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025112	exon6	c.C1451A	p.P484H	.	.	.
TMEM22	80723	broad.mit.edu	36	3	138056247	138056247	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001097599	exon2	c.T255C	p.N85N	.	.	.
C3orf72	401089	broad.mit.edu	36	3	140151931	140151931	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040061	exon3	c.G355A	p.A119T	.	.	.
TRIM42	287015	broad.mit.edu	36	3	141889364	141889364	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152616	exon3	c.C1150T	p.R384C	.	.	.
PCOLCE2	26577	broad.mit.edu	36	3	144025088	144025088	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013363	exon7	c.G925T	p.G309C	.	.	.
FAM194A	131831	broad.mit.edu	36	3	151878992	151878992	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152394	exon10	c.T1151C	p.V384A	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152648456	152648456	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178822	exon4	c.G2003A	p.R668K	.	.	.
KCNAB1	7881	broad.mit.edu	36	3	157321286	157321286	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172160	exon1	c.C192T	p.R64R	.	.	.
KCNAB1	7881	broad.mit.edu	36	3	157492448	157492448	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172159	exon1	c.C58T	p.R20X	.	.	.
CCNL1	57018	broad.mit.edu	36	3	158360393	158360393	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020307	exon1	c.A185G	p.E62G	.	.	.
VEPH1	79674	broad.mit.edu	36	3	158695751	158695751	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167911	exon2	c.A82G	p.I28V	.	.	.
SMC4	10051	broad.mit.edu	36	3	161621222	161621222	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002800	exon13	c.G1858T	p.G620W	.	.	.
SLITRK3	22865	broad.mit.edu	36	3	166390671	166390671	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014926	exon2	c.A642G	p.R214R	.	.	.
SERPINI2	5276	broad.mit.edu	36	3	168646963	168646963	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006217	exon8	c.G1052A	p.G351D	.	.	.
GHSR	2693	broad.mit.edu	36	3	173648858	173648858	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198407	exon1	c.C40T	p.L14F	.	.	.
SPATA16	83893	broad.mit.edu	36	3	174318172	174318172	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031955	exon2	c.G44T	p.R15M	.	.	.
MFN1	55669	broad.mit.edu	36	3	180559391	180559391	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033540	exon4	c.C318T	p.G106G	.	.	.
USP13	8975	broad.mit.edu	36	3	180945535	180945535	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003940	exon13	c.C1545T	p.I515I	.	.	.
ZNF385D	79750	broad.mit.edu	36	3	21453535	21453535	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024697	exon5	c.C604T	p.R202W	.	.	.
CNTN4	152330	broad.mit.edu	36	3	2917504	2917504	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175613	exon2	c.G92A	p.R31Q	.	.	.
DCLK3	85443	broad.mit.edu	36	3	36734590	36734590	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033403	exon4	c.T1668C	p.P556P	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36849988	36849988	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014831	exon21	c.G5958A	p.A1986A	.	.	.
MYD88	4615	broad.mit.edu	36	3	38157007	38157007	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172568	exon2	c.C492T	p.R164R	.	.	.
MYRIP	25924	broad.mit.edu	36	3	40261003	40261003	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015460	exon13	c.C2163T	p.A721A	.	.	.
ZNF619	285267	broad.mit.edu	36	3	40503634	40503634	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145083	exon4	c.G497A	p.G166D	.	.	.
CHL1	10752	broad.mit.edu	36	3	414920	414920	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006614	exon25	c.C3105A	p.I1035I	.	.	.
CCBP2	1238	broad.mit.edu	36	3	42881521	42881521	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001296	exon3	c.G523A	p.V175I	.	.	.
SACM1L	22908	broad.mit.edu	36	3	45755155	45755155	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014016	exon17	c.T1464C	p.D488D	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4687494	4687494	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099952	exon20	c.G2088T	p.E696D	.	.	.
RHOA	387	broad.mit.edu	36	3	49380960	49380960	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001664	exon3	c.C182T	p.A61V	.	.	.
MST1R	4486	broad.mit.edu	36	3	49899827	49899827	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002447	exon20	c.C4120T	p.R1374C	.	.	.
PHF7	51533	broad.mit.edu	36	3	52421942	52421942	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016483	exon2	c.A7G	p.T3A	.	.	.
C3orf63	23272	broad.mit.edu	36	3	56655971	56655971	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001112736	exon14	c.T1834C	p.Y612H	.	.	.
ABHD6	57406	broad.mit.edu	36	3	58245870	58245870	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020676	exon7	c.G700A	p.D234N	.	.	.
PTPRG	5793	broad.mit.edu	36	3	62232176	62232176	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002841	exon21	c.G3088T	p.G1030X	.	.	.
CADPS	8618	broad.mit.edu	36	3	62439088	62439088	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183393	exon20	c.G2980A	p.A994T	.	.	.
PDZRN3	23024	broad.mit.edu	36	3	73740471	73740471	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015009	exon2	c.G778T	p.G260X	.	.	.
CNTN3	5067	broad.mit.edu	36	3	74398473	74398473	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020872	exon21	c.C2835T	p.S945S	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78800342	78800342	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002941	exon12	c.G1612A	p.A538T	.	.	.
GBE1	2632	broad.mit.edu	36	3	81713092	81713092	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000158	exon11	c.G1360T	p.D454Y	.	.	.
C3orf38	285237	broad.mit.edu	36	3	88288004	88288004	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173824	exon3	c.G519A	p.W173X	.	.	.
EPHA3	2042	broad.mit.edu	36	3	89342022	89342022	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005233	exon3	c.A476G	p.D159G	.	.	.
EPHA3	2042	broad.mit.edu	36	3	89611337	89611337	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005233	exon17	c.G2947A	p.V983M	.	.	.
PTPN23	25930	broad.mit.edu	36	3	47427837	47427837	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015466	exon20	c.3545delG	p.R1182fs	.	.	.
COL25A1	84570	broad.mit.edu	36	4	110442435	110442435	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198721	exon2	c.G190A	p.A64T	.	.	.
CFI	3426	broad.mit.edu	36	4	110883133	110883133	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000204	exon12	c.C1497T	p.Y499Y	.	.	.
CFI	3426	broad.mit.edu	36	4	110905195	110905195	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000204	exon3	c.C429T	p.S143S	.	.	.
ENPEP	2028	broad.mit.edu	36	4	111617610	111617610	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001977	exon1	c.C591T	p.N197N	.	.	.
PITX2	5308	broad.mit.edu	36	4	111758857	111758857	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153426	exon5	c.C827T	p.T276M	.	.	.
FAT4	79633	broad.mit.edu	36	4	126590239	126590239	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon9	c.G8618A	p.S2873N	.	.	.
SLC25A31	83447	broad.mit.edu	36	4	128904936	128904936	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031291	exon3	c.G449A	p.R150Q	.	.	.
SCLT1	132320	broad.mit.edu	36	4	130086723	130086723	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144643	exon16	c.A1328G	p.Y443C	.	.	.
NAA15	80155	broad.mit.edu	36	4	140483530	140483530	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057175	exon5	c.C503T	p.A168V	.	.	.
OTUD4	54726	broad.mit.edu	36	4	146286921	146286921	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102653	exon14	c.G1175A	p.R392H	.	.	.
CPEB2	132864	broad.mit.edu	36	4	14676983	14676983	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177383	exon11	c.C2896T	p.Q966X	.	.	.
MAB21L2	10586	broad.mit.edu	36	4	151723954	151723954	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006439	exon1	c.G323A	p.R108Q	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153490653	153490653	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018315	exon2	c.A335C	p.E112A	.	.	.
FGFBP1	9982	broad.mit.edu	36	4	15547001	15547001	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005130	exon2	c.G353A	p.R118Q	.	.	.
MAP9	79884	broad.mit.edu	36	4	156514050	156514050	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039580	exon4	c.G169T	p.G57C	.	.	.
ETFDH	2110	broad.mit.edu	36	4	159825767	159825767	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004453	exon5	c.C552T	p.G184G	.	.	.
TKTL2	84076	broad.mit.edu	36	4	164613252	164613252	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032136	exon1	c.G1085A	p.R362H	.	.	.
NCAPG	64151	broad.mit.edu	36	4	17448473	17448473	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022346	exon16	c.C2417A	p.T806K	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35811361	35811361	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015230	exon20	c.G3309A	p.W1103X	.	.	.
PDS5A	23244	broad.mit.edu	36	4	39540244	39540244	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100399	exon26	c.G3076A	p.D1026N	.	.	.
CORIN	10699	broad.mit.edu	36	4	47323229	47323229	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006587	exon17	c.C2265T	p.S755S	.	.	.
NFXL1	152518	broad.mit.edu	36	4	47607624	47607624	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152995	exon3	c.C380T	p.T127M	.	.	.
SLAIN2	57606	broad.mit.edu	36	4	48074812	48074812	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020846	exon3	c.G681A	p.Q227Q	.	.	.
SRP72	6731	broad.mit.edu	36	4	57061522	57061522	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006947	exon18	c.G1742A	p.R581Q	.	.	.
EVC	2121	broad.mit.edu	36	4	5784236	5784236	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153717	exon4	c.C568T	p.R190C	.	.	.
EPHA5	2044	broad.mit.edu	36	4	66043710	66043710	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004439	exon4	c.G1057A	p.A353T	.	.	.
UTP3	57050	broad.mit.edu	36	4	71774664	71774664	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020368	exon1	c.G1406A	p.R469H	.	.	.
SHROOM3	57619	broad.mit.edu	36	4	77880521	77880521	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020859	exon5	c.G2171A	p.R724Q	.	.	.
NAA11	84779	broad.mit.edu	36	4	80465611	80465611	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032693	exon1	c.C445T	p.R149W	.	.	.
ABLIM2	84448	broad.mit.edu	36	4	8088861	8088861	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130083	exon10	c.C962T	p.A321V	.	.	.
ARHGAP24	83478	broad.mit.edu	36	4	87134868	87134868	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031305	exon6	c.A758T	p.N253I	.	.	.
MAPK10	5602	broad.mit.edu	36	4	87242178	87242178	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138981	exon2	c.T22G	p.L8V	.	.	.
DSPP	1834	broad.mit.edu	36	4	88753348	88753348	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014208	exon4	c.C986A	p.S329Y	.	.	.
HERC3	8916	broad.mit.edu	36	4	89844729	89844729	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014606	exon25	c.A2889G	p.K963K	.	.	.
PDLIM5	10611	broad.mit.edu	36	4	95758246	95758246	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011513	exon8	c.T662C	p.L221P	.	.	.
PLK4	10733	broad.mit.edu	36	4	129034408	129034409	+	Frame_Shift_Del	DEL	GA	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001190801	exon13	c.2361_2362del	p.787_788del	.	.	.
RFC1	5981	broad.mit.edu	36	4	39020449	39020449	+	De_novo_Start_InFrame	DEL	T	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002913	exon4	c.242delA	p.N81fs	.	.	.
SLCO6A1	133482	broad.mit.edu	36	5	101822067	101822067	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173488	exon6	c.G1049A	p.R350H	.	.	.
PAM	5066	broad.mit.edu	36	5	102323610	102323610	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138822	exon12	c.C1038T	p.N346N	.	.	.
TSLP	85480	broad.mit.edu	36	5	110437177	110437177	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033035	exon3	c.G286T	p.E96X	.	.	.
CCDC112	153733	broad.mit.edu	36	5	114638835	114638835	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040440	exon6	c.G895A	p.A299T	.	.	.
ZNF474	133923	broad.mit.edu	36	5	121515660	121515660	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207317	exon2	c.C76T	p.L26F	.	.	.
SNCAIP	9627	broad.mit.edu	36	5	121787009	121787009	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005460	exon4	c.C678T	p.H226H	.	.	.
AFF4	27125	broad.mit.edu	36	5	132260400	132260400	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014423	exon11	c.C1821T	p.G607G	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13790549	13790549	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon66	c.G11267T	p.R3756M	.	.	.
CTNNA1	1495	broad.mit.edu	36	5	138191299	138191299	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001903	exon7	c.T1055C	p.M352T	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13969493	13969493	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon9	c.T1161C	p.Y387Y	.	.	.
TMCO6	55374	broad.mit.edu	36	5	140001708	140001708	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018502	exon4	c.G384A	p.A128A	.	.	.
PCDHA4	56144	broad.mit.edu	36	5	140169012	140169012	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031500	exon1	c.G2056A	p.A686T	.	.	.
PCDHB7	56129	broad.mit.edu	36	5	140532684	140532684	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018940	exon1	c.C84T	p.A28A	.	.	.
PCDHB11	56125	broad.mit.edu	36	5	140561757	140561757	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018931	exon1	c.C2226T	p.T742T	.	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140692661	140692661	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031993	exon1	c.C2226T	p.G742G	.	.	.
PCDHGC3	5098	broad.mit.edu	36	5	140837197	140837197	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032402	exon1	c.C1330T	p.R444C	.	.	.
PCDH1	5097	broad.mit.edu	36	5	141224704	141224704	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032420	exon3	c.A1376C	p.Q459P	.	.	.
GPR151	134391	broad.mit.edu	36	5	145874947	145874947	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194251	exon1	c.T923C	p.V308A	.	.	.
PDGFRB	5159	broad.mit.edu	36	5	149492537	149492537	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002609	exon7	c.G1096A	p.A366T	.	.	.
PDGFRB	5159	broad.mit.edu	36	5	149495498	149495498	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002609	exon3	c.G177A	p.P59P	.	.	.
FAT2	2196	broad.mit.edu	36	5	150905433	150905433	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon9	c.T5448A	p.D1816E	.	.	.
FAT2	2196	broad.mit.edu	36	5	150925817	150925817	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon1	c.G2869A	p.A957T	.	.	.
ATP10B	23120	broad.mit.edu	36	5	159966368	159966368	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025153	exon19	c.G3142A	p.V1048I	.	.	.
GABRG2	2566	broad.mit.edu	36	5	161501824	161501824	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198904	exon7	c.C846A	p.P282P	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167585780	167585780	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122679	exon24	c.C5191T	p.R1731C	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169043797	169043797	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon8	c.A626G	p.Y209C	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169162740	169162740	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon26	c.C2655T	p.C885C	.	.	.
KCNIP1	30820	broad.mit.edu	36	5	170078439	170078439	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034838	exon2	c.A188G	p.Q63R	.	.	.
GPRIN1	114787	broad.mit.edu	36	5	175957682	175957682	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052899	exon2	c.C1760T	p.S587L	.	.	.
ZNF454	285676	broad.mit.edu	36	5	178306593	178306593	+	Nonstop_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182594	exon4	c.G250T	p.D84Y	.	.	.
ADAMTS2	9509	broad.mit.edu	36	5	178473842	178473842	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014244	exon22	c.T3268C	p.C1090R	.	.	.
BTNL8	79908	broad.mit.edu	36	5	180268204	180268204	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024850	exon2	c.T62G	p.V21G	.	.	.
TRIM41	90933	broad.mit.edu	36	5	180594576	180594576	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201627	exon7	c.T1506G	p.S502S	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23563469	23563469	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020227	exon11	c.C2515T	p.R839W	.	.	.
CDH9	1007	broad.mit.edu	36	5	27024057	27024057	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016279	exon2	c.G141T	p.M47I	.	.	.
IRX2	153572	broad.mit.edu	36	5	2802898	2802898	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134222	exon2	c.G253A	p.A85T	.	.	.
ZFR	51663	broad.mit.edu	36	5	32442822	32442822	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016107	exon6	c.G846A	p.Q282Q	.	.	.
NIPBL	25836	broad.mit.edu	36	5	37088281	37088281	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015384	exon42	c.A7119G	p.T2373T	.	.	.
NNT	23530	broad.mit.edu	36	5	43711465	43711465	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182977	exon18	c.G2730A	p.T910T	.	.	.
ISL1	3670	broad.mit.edu	36	5	50716262	50716262	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002202	exon2	c.C159T	p.D53D	.	.	.
CENPK	64105	broad.mit.edu	36	5	64886426	64886426	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022145	exon3	c.A65G	p.E22G	.	.	.
ADCY2	108	broad.mit.edu	36	5	7762334	7762334	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020546	exon10	c.G1412T	p.R471L	.	.	.
LHFPL2	10184	broad.mit.edu	36	5	77841597	77841597	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005779	exon4	c.C196T	p.R66C	.	.	.
CKMT2	1160	broad.mit.edu	36	5	80582840	80582840	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001825	exon3	c.C133T	p.P45S	.	.	.
VCAN	1462	broad.mit.edu	36	5	82873157	82873157	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164097	exon7	c.C5618A	p.S1873Y	.	.	.
TMEM161B	153396	broad.mit.edu	36	5	87537437	87537437	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153354	exon8	c.G750A	p.L250L	.	.	.
MEF2C	4208	broad.mit.edu	36	5	88054281	88054281	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193350	exon11	c.C1318T	p.R440W	.	.	.
TTC37	9652	broad.mit.edu	36	5	94889535	94889535	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014639	exon13	c.G1072T	p.E358X	.	.	.
RIOK2	55781	broad.mit.edu	36	5	96529258	96529258	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018343	exon8	c.C1066T	p.R356W	.	.	.
WDR55	54853	broad.mit.edu	36	5	140029286	140029286	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017706	exon7	c.1015delA	p.K339fs	.	.	.
GPRIN1	114787	broad.mit.edu	36	5	175958728	175958740	+	Frame_Shift_Del	DEL	CAAAGACCCAGGA	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	CAAAGACCCAGGA	CAAAGACCCAGGA	CAAAGACCCAGGA	-	CAAAGACCCAGGA	-	Unknown	Valid	Germline	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052899	exon2	c.702_714del	p.234_238del	.	.	.
PLK2	10769	broad.mit.edu	36	5	57788769	57788769	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006622	exon7	c.1004delT	p.L335fs	.	.	.
CCNC	892	broad.mit.edu	36	6	100104887	100104887	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005190	exon8	c.A458G	p.Y153C	.	.	.
SIM1	6492	broad.mit.edu	36	6	101004923	101004923	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005068	exon3	c.C289A	p.P97T	.	.	.
C6orf203	51250	broad.mit.edu	36	6	107468029	107468029	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142470	exon3	c.T387C	p.D129D	.	.	.
MAK	4117	broad.mit.edu	36	6	10938832	10938832	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005906	exon1	c.C36T	p.D12D	.	.	.
NEDD9	4739	broad.mit.edu	36	6	11299359	11299359	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006403	exon5	c.C729T	p.F243F	.	.	.
MAN1A1	4121	broad.mit.edu	36	6	119552561	119552561	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005907	exon10	c.G1513A	p.A505T	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129766719	129766719	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079823	exon40	c.C5787T	p.S1929S	.	.	.
PHACTR1	221692	broad.mit.edu	36	6	13336075	13336075	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030948	exon8	c.G1035A	p.L345L	.	.	.
ALDH8A1	64577	broad.mit.edu	36	6	135306787	135306787	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170771	exon2	c.C149T	p.A50V	.	.	.
BCLAF1	9774	broad.mit.edu	36	6	136638427	136638427	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014739	exon6	c.G1788T	p.Q596H	.	.	.
PHACTR2	9749	broad.mit.edu	36	6	144136893	144136893	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100165	exon7	c.T1197G	p.A399A	.	.	.
C6orf97	80129	broad.mit.edu	36	6	151959288	151959288	+	Silent	SNP	G	A	A	rs3757321	byHapMap	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025059	exon9	c.G1593A	p.A531A	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152504036	152504036	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon54	c.C8813T	p.T2938M	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152812463	152812463	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon28	c.T3423G	p.S1141S	.	.	.
TULP4	56995	broad.mit.edu	36	6	158835788	158835788	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007466	exon11	c.C1792T	p.Q598X	.	.	.
FAM120B	84498	broad.mit.edu	36	6	170509285	170509285	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032448	exon6	c.C2237T	p.A746V	.	.	.
HDGFL1	154150	broad.mit.edu	36	6	22678477	22678477	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138574	exon1	c.G694T	p.E232X	.	.	.
GPLD1	2822	broad.mit.edu	36	6	24553754	24553754	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001503	exon20	c.C2019T	p.Y673Y	.	.	.
GPLD1	2822	broad.mit.edu	36	6	24562333	24562333	+	Silent	SNP	G	A	A	rs1062500	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001503	exon14	c.C1224T	p.P408P	.	.	.
HFE	3077	broad.mit.edu	36	6	26195714	26195714	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139008	exon1	c.C67T	p.R23C	.	.	.
HIST1H2BF	8343	broad.mit.edu	36	6	26308032	26308032	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003522	exon1	c.C267A	p.T89T	.	.	.
HIST1H2BK	85236	broad.mit.edu	36	6	27222279	27222279	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080593	exon1	c.G278A	p.R93K	.	.	.
PRSS16	10279	broad.mit.edu	36	6	27327636	27327636	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005865	exon8	c.G846A	p.A282A	.	.	.
GPX6	257202	broad.mit.edu	36	6	28580112	28580112	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182701	exon5	c.A602C	p.Q201P	.	.	.
GPX5	2880	broad.mit.edu	36	6	28605324	28605324	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003996	exon2	c.G205A	p.V69M	.	.	.
OR12D2	26529	broad.mit.edu	36	6	29473247	29473247	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013936	exon1	c.G792T	p.E264D	.	.	.
DDR1	780	broad.mit.edu	36	6	30974928	30974928	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013993	exon19	c.C2618T	p.P873L	.	.	.
TUBB2A	7280	broad.mit.edu	36	6	3099152	3099152	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001069	exon4	c.G1282A	p.A428T	.	.	.
HSPA1L	3305	broad.mit.edu	36	6	31887116	31887116	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005527	exon2	c.G613T	p.G205C	.	.	.
TAP1	6890	broad.mit.edu	36	6	32921538	32921538	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000593	exon11	c.G2223A	p.V741V	.	.	.
SLC39A7	7922	broad.mit.edu	36	6	33278158	33278158	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006979	exon4	c.G775A	p.G259R	.	.	.
ITPR3	3710	broad.mit.edu	36	6	33770826	33770826	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002224	exon57	c.G7933A	p.E2645K	.	.	.
CPNE5	57699	broad.mit.edu	36	6	36897910	36897910	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020939	exon3	c.C141T	p.C47C	.	.	.
C6orf64	55776	broad.mit.edu	36	6	39190764	39190764	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018322	exon1	c.G80A	p.G27D	.	.	.
DAAM2	23500	broad.mit.edu	36	6	39977144	39977144	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015345	exon24	c.C2897T	p.A966V	.	.	.
LRFN2	57497	broad.mit.edu	36	6	40468316	40468316	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020737	exon3	c.G1714A	p.V572M	.	.	.
USP49	25862	broad.mit.edu	36	6	41881522	41881522	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018561	exon4	c.G1178A	p.R393H	.	.	.
KLC4	89953	broad.mit.edu	36	6	43141372	43141372	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201521	exon4	c.G526T	p.D176Y	.	.	.
POLH	5429	broad.mit.edu	36	6	43673420	43673420	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006502	exon5	c.G500A	p.R167Q	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51990216	51990216	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170724	exon34	c.G5551A	p.D1851N	.	.	.
HMGCLL1	54511	broad.mit.edu	36	6	55412293	55412293	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019036	exon9	c.C909T	p.S303S	.	.	.
COL21A1	81578	broad.mit.edu	36	6	56141023	56141023	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030820	exon6	c.G1058A	p.R353H	.	.	.
COL21A1	81578	broad.mit.edu	36	6	56152794	56152794	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	A	Unknown	Valid	Germline	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030820	exon3	c.G181T	p.V61F	.	.	.
DST	667	broad.mit.edu	36	6	56588909	56588909	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001723	exon24	c.G7315C	p.V2439L	.	.	.
ZNF451	26036	broad.mit.edu	36	6	57120752	57120752	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015555	exon10	c.G1910C	p.S637T	.	.	.
DSP	1832	broad.mit.edu	36	6	7524569	7524569	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008844	exon23	c.G3147A	p.S1049S	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75949635	75949635	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004370	exon10	c.G1742A	p.R581H	.	.	.
TTK	7272	broad.mit.edu	36	6	80801549	80801549	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166691	exon15	c.C1740A	p.H580Q	.	.	.
TBX18	9096	broad.mit.edu	36	6	85503422	85503422	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080508	exon8	c.C1524T	p.F508F	.	.	.
CGA	1081	broad.mit.edu	36	6	87852731	87852731	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000735	exon3	c.G229A	p.V77I	.	.	.
MDN1	23195	broad.mit.edu	36	6	90459323	90459323	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014611	exon63	c.C10147T	p.R3383W	.	.	.
CDHR3	222256	broad.mit.edu	36	7	105448174	105448174	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152750	exon13	c.A1773G	p.T591T	.	.	.
TES	26136	broad.mit.edu	36	7	115679628	115679628	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015641	exon6	c.T939C	p.Y313Y	.	.	.
KCND2	3751	broad.mit.edu	36	7	119702390	119702390	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012281	exon1	c.C468T	p.T156T	.	.	.
GCC1	79571	broad.mit.edu	36	7	127010322	127010322	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024523	exon2	c.A1310G	p.E437G	.	.	.
CALU	813	broad.mit.edu	36	7	128181738	128181738	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001219	exon3	c.C408T	p.Y136Y	.	.	.
ZC3HC1	51530	broad.mit.edu	36	7	129451546	129451546	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016478	exon7	c.A813G	p.T271T	.	.	.
CPA1	1357	broad.mit.edu	36	7	129810818	129810818	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001868	exon6	c.A643G	p.I215V	.	.	.
TSGA14	95681	broad.mit.edu	36	7	129829016	129829016	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018718	exon8	c.A584G	p.Y195C	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131516836	131516836	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020911	exon18	c.C3336T	p.T1112T	.	.	.
EXOC4	60412	broad.mit.edu	36	7	132610399	132610399	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037126	exon2	c.C209T	p.T70M	.	.	.
CALD1	800	broad.mit.edu	36	7	134295303	134295303	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033157	exon12	c.G1410T	p.S470S	.	.	.
UBN2	254048	broad.mit.edu	36	7	138618697	138618697	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173569	exon15	c.C2506T	p.H836Y	.	.	.
NDUFB2	4708	broad.mit.edu	36	7	140049166	140049166	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004546	exon2	c.T130C	p.Y44H	.	.	.
OR9A4	130075	broad.mit.edu	36	7	141265216	141265216	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001656	exon1	c.T72C	p.H24H	.	.	.
TAS2R38	5726	broad.mit.edu	36	7	141319787	141319787	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176817	exon1	c.C172A	p.L58M	.	.	.
PRSS1	5644	broad.mit.edu	36	7	142139201	142139201	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002769	exon3	c.G203T	p.R68L	.	.	.
KEL	3792	broad.mit.edu	36	7	142368216	142368216	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000420	exon4	c.C321A	p.A107A	.	.	.
EPHA1	2041	broad.mit.edu	36	7	142808665	142808665	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005232	exon3	c.C306T	p.T102T	.	.	.
OR2F1	26211	broad.mit.edu	36	7	143288914	143288914	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012369	exon1	c.G918T	p.W306C	.	.	.
ARHGEF5	7984	broad.mit.edu	36	7	143693379	143693379	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005435	exon2	c.G2684A	p.R895H	.	.	.
CNTNAP2	26047	broad.mit.edu	36	7	147545349	147545349	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014141	exon19	c.G3047A	p.R1016Q	.	.	.
TMEM176B	28959	broad.mit.edu	36	7	150124530	150124530	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101312	exon2	c.A61G	p.T21A	.	.	.
MLL3	58508	broad.mit.edu	36	7	151507907	151507907	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170606	exon37	c.C7387T	p.R2463C	.	.	.
MLL3	58508	broad.mit.edu	36	7	151510538	151510538	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170606	exon36	c.G5340A	p.Q1780Q	.	.	.
PAXIP1	22976	broad.mit.edu	36	7	154391182	154391182	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007349	exon7	c.G1662A	p.A554A	.	.	.
MACC1	346389	broad.mit.edu	36	7	20166342	20166342	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182762	exon5	c.G167A	p.R56H	.	.	.
ITGB8	3696	broad.mit.edu	36	7	20385314	20385314	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002214	exon4	c.C504T	p.S168S	.	.	.
SDK1	221935	broad.mit.edu	36	7	4017265	4017265	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152744	exon15	c.C2273A	p.T758K	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48323275	48323275	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon23	c.C9419T	p.A3140V	.	.	.
COBL	23242	broad.mit.edu	36	7	51064135	51064135	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015198	exon10	c.C2152T	p.R718X	.	.	.
POM121L12	285877	broad.mit.edu	36	7	53071145	53071145	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182595	exon1	c.G287A	p.G96D	.	.	.
TNRC18	84629	broad.mit.edu	36	7	5314329	5314329	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080495	exon30	c.C8841T	p.L2947L	.	.	.
LANCL2	55915	broad.mit.edu	36	7	55435164	55435164	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018697	exon4	c.C551T	p.S184L	.	.	.
EIF2AK1	27102	broad.mit.edu	36	7	6056113	6056113	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134335	exon3	c.G367C	p.A123P	.	.	.
C7orf26	79034	broad.mit.edu	36	7	6600626	6600626	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024067	exon3	c.G450A	p.K150K	.	.	.
BAZ1B	9031	broad.mit.edu	36	7	72530248	72530248	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032408	exon7	c.C1479T	p.S493S	.	.	.
HIP1	3092	broad.mit.edu	36	7	75066499	75066499	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005338	exon2	c.T123C	p.T41T	.	.	.
HGF	3082	broad.mit.edu	36	7	81196946	81196946	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000601	exon8	c.C951T	p.V317V	.	.	.
PCLO	27445	broad.mit.edu	36	7	82346658	82346658	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon10	c.G13585A	p.E4529K	.	.	.
ZNF804B	219578	broad.mit.edu	36	7	88801310	88801310	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181646	exon4	c.C1078A	p.P360T	.	.	.
HEPACAM2	253012	broad.mit.edu	36	7	92675906	92675906	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198151	exon3	c.A899G	p.D300G	.	.	.
TFPI2	7980	broad.mit.edu	36	7	93357439	93357439	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006528	exon2	c.G217A	p.A73T	.	.	.
ZKSCAN5	23660	broad.mit.edu	36	7	98967054	98967054	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145102	exon7	c.G1766A	p.R589H	.	.	.
CYP3A7	1551	broad.mit.edu	36	7	99170597	99170597	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000765	exon1	c.T56C	p.L19P	.	.	.
LOC389458	389458	broad.mit.edu	36	7	5079202	5079202	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SLC30A8	169026	broad.mit.edu	36	8	118228394	118228394	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173851	exon2	c.C92A	p.P31Q	.	.	.
SNTB1	6641	broad.mit.edu	36	8	121714036	121714036	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021021	exon3	c.G825A	p.T275T	.	.	.
KCNQ3	3786	broad.mit.edu	36	8	133265759	133265759	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004519	exon3	c.C515T	p.A172V	.	.	.
WISP1	8840	broad.mit.edu	36	8	134294568	134294568	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003882	exon2	c.C349T	p.Q117X	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139806844	139806844	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152888	exon24	c.G2161A	p.V721I	.	.	.
EIF2C2	27161	broad.mit.edu	36	8	141618707	141618707	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164623	exon16	c.G2063A	p.R688H	.	.	.
LY6K	54742	broad.mit.edu	36	8	143781595	143781595	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017527	exon3	c.G302A	p.R101Q	.	.	.
DLGAP2	9228	broad.mit.edu	36	8	1484830	1484830	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004745	exon2	c.C564T	p.H188H	.	.	.
CLN8	2055	broad.mit.edu	36	8	1706639	1706639	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018941	exon2	c.G12A	p.A4A	.	.	.
SLC7A2	6542	broad.mit.edu	36	8	17463793	17463793	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008539	exon10	c.C1553T	p.A518V	.	.	.
POLR3D	661	broad.mit.edu	36	8	22162689	22162689	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001722	exon7	c.C843A	p.T281T	.	.	.
PIWIL2	55124	broad.mit.edu	36	8	22217570	22217570	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018068	exon11	c.C1273T	p.R425C	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3064314	3064314	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon29	c.C4543A	p.Q1515K	.	.	.
TEX15	56154	broad.mit.edu	36	8	30819679	30819679	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031271	exon1	c.T6397C	p.S2133P	.	.	.
ADAM18	8749	broad.mit.edu	36	8	39644809	39644809	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014237	exon14	c.G1462T	p.A488S	.	.	.
MCM4	4173	broad.mit.edu	36	8	49049976	49049976	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182746	exon15	c.A2266G	p.I756V	.	.	.
SNAI2	6591	broad.mit.edu	36	8	49996318	49996318	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003068	exon1	c.C60T	p.S20S	.	.	.
MYBL1	4603	broad.mit.edu	36	8	67655113	67655113	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080416	exon9	c.G910T	p.D304Y	.	.	.
PRDM14	63978	broad.mit.edu	36	8	71144286	71144286	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024504	exon2	c.G364A	p.A122T	.	.	.
SGK223	157285	broad.mit.edu	36	8	8271288	8271288	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080826	exon2	c.C2041T	p.Q681X	.	.	.
MFHAS1	9258	broad.mit.edu	36	8	8786081	8786081	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004225	exon1	c.G1898A	p.R633H	.	.	.
DCAF4L2	138009	broad.mit.edu	36	8	88954303	88954303	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152418	exon1	c.C1013T	p.T338M	.	.	.
MATN2	4147	broad.mit.edu	36	8	99023192	99023192	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030583	exon4	c.T724C	p.C242R	.	.	.
C8orf47	203111	broad.mit.edu	36	8	99171274	99171274	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173549	exon2	c.C853T	p.P285S	.	.	.
SLCO5A1	81796	broad.mit.edu	36	8	70906800	70906800	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030958	exon2	c.663delC	p.P221fs	.	.	.
LRRCC1	85444	broad.mit.edu	36	8	86209238	86209238	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033402	exon2	c.261delA	p.T87fs	.	.	.
CA13	377677	broad.mit.edu	36	8	86366176	86366176	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198584	exon4	c.442delT	p.F148fs	.	.	.
SLC44A1	23446	broad.mit.edu	36	9	107158033	107158034	+	De_novo_Start_InFrame	INS	-	TG	TG	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ALDOB	229	broad.mit.edu	36	9	103229643	103229643	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000035	exon5	c.G482T	p.S161I	.	.	.
ABCA1	19	broad.mit.edu	36	9	106590143	106590143	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005502	exon46	c.C6083T	p.A2028V	.	.	.
ABCA1	19	broad.mit.edu	36	9	106606751	106606751	+	Silent	SNP	C	T	T	rs41277763	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005502	exon32	c.G4536A	p.T1512T	.	.	.
C9orf84	158401	broad.mit.edu	36	9	113543628	113543628	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173521	exon9	c.A931G	p.M311V	.	.	.
FKBP15	23307	broad.mit.edu	36	9	114971503	114971503	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015258	exon26	c.G3307A	p.E1103K	.	.	.
PRPF4	9128	broad.mit.edu	36	9	115077857	115077857	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004697	exon1	c.C13T	p.R5X	.	.	.
HDHD3	81932	broad.mit.edu	36	9	115176299	115176299	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031219	exon2	c.T157C	p.Y53H	.	.	.
RGS3	5998	broad.mit.edu	36	9	115386101	115386101	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144488	exon21	c.G2588T	p.S863I	.	.	.
COL27A1	85301	broad.mit.edu	36	9	115971120	115971120	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032888	exon3	c.C1464A	p.S488S	.	.	.
TNC	3371	broad.mit.edu	36	9	116828747	116828747	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002160	exon26	c.G6218A	p.R2073Q	.	.	.
PAPPA	5069	broad.mit.edu	36	9	117990200	117990200	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002581	exon2	c.C1362T	p.N454N	.	.	.
CEP110	11064	broad.mit.edu	36	9	122971846	122971846	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007018	exon37	c.T6207C	p.A2069A	.	.	.
DAB2IP	153090	broad.mit.edu	36	9	123576440	123576440	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032552	exon13	c.C2964T	p.D988D	.	.	.
TTLL11	158135	broad.mit.edu	36	9	123841372	123841372	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001139442	exon2	c.G829T	p.G277C	.	.	.
LHX6	26468	broad.mit.edu	36	9	124016434	124016434	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199160	exon6	c.A732G	p.Q244Q	.	.	.
OR1J4	26219	broad.mit.edu	36	9	124321831	124321831	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004452	exon1	c.G591T	p.L197L	.	.	.
OR1B1	347169	broad.mit.edu	36	9	124430891	124430891	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004450	exon1	c.T745C	p.S249P	.	.	.
RABGAP1	23637	broad.mit.edu	36	9	124891911	124891911	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012197	exon20	c.A2478G	p.E826E	.	.	.
RPL35	11224	broad.mit.edu	36	9	126660139	126660139	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007209	exon4	c.G251A	p.R84Q	.	.	.
PPP6C	5537	broad.mit.edu	36	9	126951788	126951788	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001123369	exon6	c.G837A	p.T279T	.	.	.
ZER1	10444	broad.mit.edu	36	9	130542049	130542049	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006336	exon13	c.G2024A	p.R675Q	.	.	.
TOR1A	1861	broad.mit.edu	36	9	131624794	131624794	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000113	exon2	c.G331A	p.V111I	.	.	.
DBH	1621	broad.mit.edu	36	9	135497253	135497253	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000787	exon3	c.T590C	p.L197P	.	.	.
SARDH	1757	broad.mit.edu	36	9	135587387	135587387	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007101	exon3	c.C489T	p.D163D	.	.	.
BRD3	8019	broad.mit.edu	36	9	135891155	135891155	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007371	exon10	c.C1756T	p.R586W	.	.	.
NDOR1	27158	broad.mit.edu	36	9	139229939	139229939	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144028	exon11	c.C1275T	p.V425V	.	.	.
ARRDC1	92714	broad.mit.edu	36	9	139627261	139627261	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152285	exon2	c.C211A	p.L71M	.	.	.
CACNA1B	774	broad.mit.edu	36	9	140039376	140039376	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000718	exon20	c.G3217T	p.D1073Y	.	.	.
ELAVL2	1993	broad.mit.edu	36	9	23691564	23691564	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171197	exon5	c.C526T	p.R176X	.	.	.
VLDLR	7436	broad.mit.edu	36	9	2636525	2636525	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018056	exon11	c.C1676T	p.A559V	.	.	.
TEK	7010	broad.mit.edu	36	9	27148089	27148089	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000459	exon2	c.C313T	p.R105X	.	.	.
RFX3	5991	broad.mit.edu	36	9	3215279	3215279	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134428	exon18	c.T2013A	p.D671E	.	.	.
CD72	971	broad.mit.edu	36	9	35601902	35601902	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001782	exon7	c.C849A	p.F283L	.	.	.
C9orf128	392307	broad.mit.edu	36	9	35815359	35815359	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012446	exon3	c.C610T	p.R204C	.	.	.
FBXO10	26267	broad.mit.edu	36	9	37511773	37511773	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012166	exon8	c.G1993A	p.V665I	.	.	.
KIAA2026	158358	broad.mit.edu	36	9	5911447	5911447	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017969	exon8	c.A4549G	p.T1517A	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76580733	76580733	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177310	exon24	c.G3274A	p.E1092K	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78512571	78512571	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015225	exon8	c.G4439A	p.G1480E	.	.	.
FAM75D1	389763	broad.mit.edu	36	9	83798289	83798289	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001670	exon4	c.T3084C	p.G1028G	.	.	.
SEMA4D	10507	broad.mit.edu	36	9	91201498	91201498	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142287	exon8	c.G388A	p.A130T	.	.	.
FAM120AOS	158293	broad.mit.edu	36	9	95252626	95252626	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198841	exon2	c.G640A	p.A214T	.	.	.
NCBP1	4686	broad.mit.edu	36	9	99447735	99447735	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002486	exon6	c.T511C	p.Y171H	.	.	.
COL5A1	1289	broad.mit.edu	36	9	136782211	136782211	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000093	exon12	c.1497delC	p.G499fs	.	.	.
FREM1	158326	broad.mit.edu	36	9	14809263	14809263	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144966	exon15	c.2515delT	p.S839fs	.	.	.
KLF4	9314	broad.mit.edu	36	9	109289328	109289328	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
IRAK1	3654	broad.mit.edu	36	X	152937880	152937881	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025243	exon3	c.398_399insC	p.R133fs	.	.	.
NXF5	55998	broad.mit.edu	36	X	100979261	100979261	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032946	exon15	c.A941C	p.K314T	.	.	.
IRS4	8471	broad.mit.edu	36	X	107864563	107864563	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003604	exon1	c.C1668T	p.H556H	.	.	.
TMEM164	84187	broad.mit.edu	36	X	109303266	109303266	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032227	exon7	c.A825G	p.S275S	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123458577	123458577	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014253	exon20	c.C3665T	p.S1222L	.	.	.
PHF6	84295	broad.mit.edu	36	X	133339432	133339432	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032335	exon2	c.C119T	p.A40V	.	.	.
HTATSF1	27336	broad.mit.edu	36	X	135420980	135420980	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014500	exon9	c.C1410T	p.G470G	.	.	.
GABRQ	55879	broad.mit.edu	36	X	151570831	151570831	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018558	exon8	c.G1088T	p.R363M	.	.	.
YY2	404281	broad.mit.edu	36	X	21771229	21771229	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015884	exon2	c.T96C	p.H32H	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3252301	3252301	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015419	exon5	c.C1425T	p.S475S	.	.	.
SRPX	8406	broad.mit.edu	36	X	37904239	37904239	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006307	exon7	c.G930A	p.W310X	.	.	.
TSPAN7	7102	broad.mit.edu	36	X	38418514	38418514	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004615	exon4	c.C441T	p.S147S	.	.	.
CXorf36	79742	broad.mit.edu	36	X	44944978	44944978	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176819	exon1	c.G38A	p.R13H	.	.	.
HDAC6	10013	broad.mit.edu	36	X	48558083	48558083	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006044	exon12	c.G991A	p.A331T	.	.	.
CLCN5	1184	broad.mit.edu	36	X	49742227	49742227	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127899	exon14	c.C2304T	p.I768I	.	.	.
KLF8	11279	broad.mit.edu	36	X	56327633	56327633	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007250	exon6	c.G1061A	p.R354H	.	.	.
NAP1L3	4675	broad.mit.edu	36	X	92813996	92813996	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004538	exon1	c.G964T	p.V322F	.	.	.
GPR143	4935	broad.mit.edu	36	X	9667677	9667677	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000273	exon8	c.C968A	p.P323H	.	.	.
PCDH19	57526	broad.mit.edu	36	X	99549395	99549395	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105243	exon1	c.G857A	p.R286H	.	.	.
GPC4	2239	broad.mit.edu	36	X	132267589	132267589	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001448	exon6	c.1032delC	p.P344fs	.	.	.
MAP7D2	256714	broad.mit.edu	36	X	19970584	19970584	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001168465	exon8	c.964delT	p.S322fs	.	.	.
CCDC120	90060	broad.mit.edu	36	X	48808408	48808408	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163323	exon5	c.220delC	p.P74fs	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63329373	63329373	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152424	exon2	c.519delT	p.F173fs	.	.	.
GLOD5	392465	broad.mit.edu	36	X	48509341	48509341	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.