Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
EBF3	253738	broad.mit.edu	36	10	131530433	131530433	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005463	exon13	c.G1282A	p.V428I	.	.	.
ABI1	10006	broad.mit.edu	36	10	27077571	27077571	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001178124	exon8	c.C1101T	p.V367V	.	.	.
ASAH2	56624	broad.mit.edu	36	10	51678312	51678312	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019893	exon1	c.C65T	p.A22V	.	.	.
TET1	80312	broad.mit.edu	36	10	70075464	70075464	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030625	exon4	c.C2972A	p.T991K	.	.	.
IL15RA	3601	broad.mit.edu	36	10	6042335	6042335	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TRPC6	7225	broad.mit.edu	36	11	100880358	100880358	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004621	exon2	c.G552A	p.P184P	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102546849	102546849	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001377	exon34	c.C5176T	p.R1726X	.	.	.
RBM7	10179	broad.mit.edu	36	11	113783531	113783531	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016090	exon5	c.G593A	p.R198H	.	.	.
OR10G9	219870	broad.mit.edu	36	11	123399081	123399081	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001953	exon1	c.C152T	p.S51F	.	.	.
OR10G7	390265	broad.mit.edu	36	11	123414794	123414794	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004463	exon1	c.T125A	p.L42H	.	.	.
LGR4	55366	broad.mit.edu	36	11	27346064	27346064	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018490	exon18	c.C2782T	p.R928X	.	.	.
OR52A5	390054	broad.mit.edu	36	11	5110441	5110441	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005160	exon1	c.C8T	p.T3I	.	.	.
OR5M8	219484	broad.mit.edu	36	11	56015079	56015079	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005282	exon1	c.C344G	p.A115G	.	.	.
TUT1	64852	broad.mit.edu	36	11	62105254	62105254	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022830	exon4	c.G704A	p.G235D	.	.	.
CAPN1	823	broad.mit.edu	36	11	64710309	64710309	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001198868	exon6	c.G683A	p.R228H	.	.	.
PCNXL3	399909	broad.mit.edu	36	11	65140895	65140895	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032223	exon2	c.G178T	p.A60S	.	.	.
DCHS1	8642	broad.mit.edu	36	11	6618544	6618544	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003737	exon2	c.G877A	p.E293K	.	.	.
SHANK2	22941	broad.mit.edu	36	11	70010575	70010575	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012309	exon22	c.C3280T	p.R1094C	.	.	.
SART3	9733	broad.mit.edu	36	12	107456888	107456888	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014706	exon7	c.C1014T	p.V338V	.	.	.
RASAL1	8437	broad.mit.edu	36	12	112022240	112022240	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004658	exon22	c.C2292T	p.V764V	.	.	.
GPR19	2842	broad.mit.edu	36	12	12706177	12706177	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006143	exon4	c.C473A	p.S158Y	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35T	p.G12V	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
C12orf11	55726	broad.mit.edu	36	12	26955497	26955497	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018164	exon15	c.G1826A	p.R609H	.	.	.
COL2A1	1280	broad.mit.edu	36	12	46677702	46677702	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033150	exon6	c.G278C	p.G93A	.	.	.
C13orf28	122258	broad.mit.edu	36	13	112103412	112103412	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145248	exon5	c.C378T	p.G126G	.	.	.
RNF17	56163	broad.mit.edu	36	13	24326235	24326235	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001184993	exon25	c.G3551T	p.S1184I	.	.	.
DCLK1	9201	broad.mit.edu	36	13	35598082	35598082	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004734	exon2	c.G193A	p.G65R	.	.	.
SPG20	23111	broad.mit.edu	36	13	35807170	35807170	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142295	exon2	c.C798A	p.P266P	.	.	.
TSC22D1	8848	broad.mit.edu	36	13	44045955	44045955	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_183422	exon1	c.A2256G	p.S752S	.	.	.
C14orf50	145376	broad.mit.edu	36	14	64123710	64123710	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_172365	exon10	c.C757T	p.R253C	.	.	.
RYR3	6263	broad.mit.edu	36	15	31661074	31661074	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001036	exon14	c.T1511C	p.I504T	.	.	.
PLEKHO2	80301	broad.mit.edu	36	15	62939245	62939245	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001195059	exon3	c.G229A	p.D77N	.	.	.
HCN4	10021	broad.mit.edu	36	15	71404488	71404488	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005477	exon6	c.C1839T	p.F613F	.	.	.
UMOD	7369	broad.mit.edu	36	16	20264950	20264950	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003361	exon5	c.C1181T	p.T394M	.	.	.
GTF3C1	2975	broad.mit.edu	36	16	27383426	27383426	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001520	exon34	c.G5588A	p.R1863H	.	.	.
ATP2A1	487	broad.mit.edu	36	16	28813769	28813769	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004320	exon12	c.C1413A	p.C471X	.	.	.
ITGAX	3687	broad.mit.edu	36	16	31291445	31291445	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000887	exon19	c.C2319T	p.A773A	.	.	.
PHKB	5257	broad.mit.edu	36	16	46138958	46138958	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001031835	exon8	c.G687A	p.S229S	.	.	.
ABCC11	85320	broad.mit.edu	36	16	46802504	46802504	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145186	exon11	c.C1464T	p.P488P	.	.	.
ABCC11	85320	broad.mit.edu	36	16	46815748	46815748	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_145186	exon5	c.G489T	p.L163F	.	.	.
NAGPA	51172	broad.mit.edu	36	16	5018966	5018966	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016256	exon5	c.T836A	p.V279E	.	.	.
IRX6	79190	broad.mit.edu	36	16	53920384	53920384	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024335	exon5	c.G993A	p.S331S	.	.	.
TUBB3	10381	broad.mit.edu	36	16	88528894	88528894	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006086	exon4	c.G534A	p.T178T	.	.	.
NAGLU	4669	broad.mit.edu	36	17	37948711	37948711	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000263	exon6	c.C1161T	p.S387S	.	.	.
OSBPL7	114881	broad.mit.edu	36	17	43241547	43241547	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145798	exon20	c.C2064T	p.G688G	.	.	.
FAM20A	54757	broad.mit.edu	36	17	64049882	64049882	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017565	exon7	c.C948A	p.F316L	.	.	.
ZNF524	147807	broad.mit.edu	36	19	60805457	60805458	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153219	exon2	c.167_168insC	p.R56fs	.	.	.
ZNF443	10224	broad.mit.edu	36	19	12403282	12403282	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005815	exon4	c.C704G	p.S235C	.	.	.
MKNK2	2872	broad.mit.edu	36	19	1994518	1994518	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017572	exon6	c.C403T	p.Q135X	.	.	.
PTPRS	5802	broad.mit.edu	36	19	5195149	5195149	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002850	exon11	c.G1333A	p.V445M	.	.	.
RASIP1	54922	broad.mit.edu	36	19	53917025	53917025	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017805	exon11	c.G2590A	p.A864T	.	.	.
LHB	3972	broad.mit.edu	36	19	54211219	54211219	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000894	exon3	c.G344A	p.R115H	.	.	.
KCNA7	3743	broad.mit.edu	36	19	54265879	54265879	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031886	exon2	c.G624A	p.P208P	.	.	.
SIGLEC6	946	broad.mit.edu	36	19	56726385	56726385	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001245	exon2	c.C268T	p.R90W	.	.	.
NLRP2	55655	broad.mit.edu	36	19	60186481	60186481	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001174083	exon7	c.G1534A	p.V512I	.	.	.
MUC16	94025	broad.mit.edu	36	19	8919007	8919007	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024690	exon3	c.G29439T	p.A9813A	.	.	.
MUC16	94025	broad.mit.edu	36	19	8926457	8926457	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024690	exon3	c.C21989A	p.T7330K	.	.	.
KIF1B	23095	broad.mit.edu	36	1	10351168	10351168	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015074	exon42	c.C4671T	p.S1557S	.	.	.
KCND3	3752	broad.mit.edu	36	1	112326004	112326004	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004980	exon2	c.C868T	p.R290W	.	.	.
IGSF3	3321	broad.mit.edu	36	1	116944479	116944479	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001542	exon8	c.G1696A	p.A566T	.	.	.
PRAMEF1	65121	broad.mit.edu	36	1	12778488	12778488	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_023013	exon4	c.T1181A	p.L394Q	.	.	.
OTUD7B	56957	broad.mit.edu	36	1	148209639	148209639	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020205	exon3	c.C250T	p.Q84X	.	.	.
FLG2	388698	broad.mit.edu	36	1	150593084	150593084	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001014342	exon3	c.C3802T	p.R1268X	.	.	.
FBLIM1	54751	broad.mit.edu	36	1	15969589	15969589	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017556	exon6	c.T640C	p.C214R	.	.	.
FMO1	2326	broad.mit.edu	36	1	169516693	169516693	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002021	exon6	c.C772T	p.R258X	.	.	.
C1orf26	54823	broad.mit.edu	36	1	183450335	183450335	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001105518	exon14	c.T2046A	p.S682R	.	.	.
PLA2G2C	391013	broad.mit.edu	36	1	20374137	20374137	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105572	exon1	c.C138T	p.G46G	.	.	.
AIM1L	55057	broad.mit.edu	36	1	26537528	26537528	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039775	exon7	c.C3372T	p.F1124F	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33775278	33775278	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052896	exon61	c.G9378A	p.P3126P	.	.	.
CYP4B1	1580	broad.mit.edu	36	1	47050779	47050779	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099772	exon4	c.G392T	p.G131V	.	.	.
EPS15	2060	broad.mit.edu	36	1	51639179	51639179	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001159969	exon7	c.C975T	p.I325I	.	.	.
PRKAA2	5563	broad.mit.edu	36	1	56945912	56945912	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006252	exon9	c.G1597T	p.G533C	.	.	.
ZNF326	284695	broad.mit.edu	36	1	90248267	90248267	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182976	exon6	c.C648T	p.P216P	.	.	.
BARHL2	343472	broad.mit.edu	36	1	90955220	90955220	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020063	exon1	c.G121A	p.A41T	.	.	.
MACROD2	140733	broad.mit.edu	36	20	15360073	15360073	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080676	exon7	c.C564A	p.G188G	.	.	.
SNTA1	6640	broad.mit.edu	36	20	31469203	31469203	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003098	exon3	c.C684T	p.P228P	.	.	.
CDH22	64405	broad.mit.edu	36	20	44303222	44303222	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021248	exon2	c.G337A	p.D113N	.	.	.
SALL4	57167	broad.mit.edu	36	20	49834608	49834608	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020436	exon4	c.C2765T	p.A922V	.	.	.
TSHZ2	128553	broad.mit.edu	36	20	51305234	51305234	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173485	exon2	c.G1830A	p.A610A	.	.	.
PAK7	57144	broad.mit.edu	36	20	9494755	9494755	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_177990	exon5	c.C1267A	p.Q423K	.	.	.
MCM3AP	8888	broad.mit.edu	36	21	46479711	46479711	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003906	exon28	c.G5842A	p.E1948K	.	.	.
MCM3AP	8888	broad.mit.edu	36	21	46519637	46519637	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003906	exon6	c.C1889T	p.A630V	.	.	.
PCNT	5116	broad.mit.edu	36	21	46655826	46655826	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006031	exon28	c.G5411A	p.R1804Q	.	.	.
MAPK12	6300	broad.mit.edu	36	22	49038859	49038860	+	Splice_Site	INS	-	G	G	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PI4KA	5297	broad.mit.edu	36	22	19426961	19426961	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_058004	exon31	c.G3374A	p.R1125H	.	.	.
CSF2RB	1439	broad.mit.edu	36	22	35652138	35652138	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000395	exon4	c.C364T	p.R122W	.	.	.
KCNJ4	3761	broad.mit.edu	36	22	37153962	37153962	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004981	exon2	c.G122A	p.R41H	.	.	.
CYB5R3	1727	broad.mit.edu	36	22	41354137	41354137	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001129819	exon5	c.G359A	p.R120Q	.	.	.
GYPC	2995	broad.mit.edu	36	2	127167937	127167937	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016815	exon2	c.C77T	p.P26L	.	.	.
LCT	3938	broad.mit.edu	36	2	136263792	136263792	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002299	exon16	c.G5382A	p.A1794A	.	.	.
NEB	4703	broad.mit.edu	36	2	152235897	152235897	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164507	exon38	c.C4392T	p.G1464G	.	.	.
TANC1	85461	broad.mit.edu	36	2	159795068	159795068	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033394	exon27	c.A4885G	p.R1629G	.	.	.
PXDN	7837	broad.mit.edu	36	2	1643685	1643685	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012293	exon14	c.G1812A	p.S604S	.	.	.
SLC16A14	151473	broad.mit.edu	36	2	230619465	230619465	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152527	exon4	c.G621A	p.A207A	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237968264	237968264	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004369	exon3	c.C414T	p.A138A	.	.	.
AGTR1	185	broad.mit.edu	36	3	149942430	149942431	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032049	exon3	c.918_919insA	p.G306fs	.	.	.
C3orf25	90288	broad.mit.edu	36	3	130612720	130612720	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207307	exon5	c.C1006T	p.R336W	.	.	.
SI	6476	broad.mit.edu	36	3	166224150	166224150	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001041	exon26	c.C3001T	p.L1001L	.	.	.
SI	6476	broad.mit.edu	36	3	166265802	166265802	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001041	exon7	c.C748T	p.R250C	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180399570	180399570	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon2	c.G263A	p.R88Q	 PIK3CA,central_nervous_system,brain,Substitution - Missense,0 	.	.
PIK3CA	5290	broad.mit.edu	36	3	180404247	180404247	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon5	c.T1035A	p.N345K	 PIK3CA,breast,NS,Substitution - Missense,0 	.	.
SUMF1	285362	broad.mit.edu	36	3	4436752	4436752	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164675	exon4	c.C598T	p.H200Y	.	.	.
ZNF502	91392	broad.mit.edu	36	3	44737894	44737894	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033210	exon4	c.G581A	p.R194H	.	.	.
CCR1	1230	broad.mit.edu	36	3	46219964	46219964	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001295	exon2	c.C845T	p.A282V	.	.	.
C3orf54	389119	broad.mit.edu	36	3	49817276	49817276	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_203370	exon2	c.G716A	p.R239K	.	.	.
TLR9	54106	broad.mit.edu	36	3	52230658	52230658	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017442	exon2	c.G2714A	p.R905H	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78771706	78771706	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002941	exon22	c.C2915T	p.A972V	.	.	.
ARL13B	200894	broad.mit.edu	36	3	95244647	95244647	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001174150	exon7	c.G897C	p.E299D	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123475027	123475027	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015312	exon67	c.A11725G	p.K3909E	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153478405	153478405	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018315	exon4	c.A620T	p.E207V	.	.	.
MAP9	79884	broad.mit.edu	36	4	156496479	156496479	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039580	exon9	c.A1129G	p.T377A	.	.	.
TLL1	7092	broad.mit.edu	36	4	167206352	167206352	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012464	exon16	c.T2075G	p.F692C	.	.	.
APC	324	broad.mit.edu	36	5	112144424	112144425	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000038	exon6	c.570_571insT	p.E190fs	.	.	.
SLCO4C1	353189	broad.mit.edu	36	5	101634280	101634280	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_180991	exon3	c.G749A	p.G250E	.	.	.
APC	324	broad.mit.edu	36	5	112203070	112203070	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.C3826T	p.Q1276X	 APC,large_intestine,right,Substitution - Nonsense,0 	.	.
MCC	4163	broad.mit.edu	36	5	112434762	112434762	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001085377	exon12	c.C1853T	p.A618V	.	.	.
KCNN2	3781	broad.mit.edu	36	5	113859778	113859778	+	Nonstop_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021614	exon8	c.G1740T	p.X580Y	.	.	.
PCDHA8	56140	broad.mit.edu	36	5	140202480	140202480	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031856	exon1	c.G1390A	p.V464M	.	.	.
PCDHAC2	56134	broad.mit.edu	36	5	140328350	140328350	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018899	exon1	c.C1815T	p.T605T	.	.	.
PCDHB3	56132	broad.mit.edu	36	5	140461125	140461125	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018937	exon1	c.C708T	p.N236N	.	.	.
PCDHB15	56121	broad.mit.edu	36	5	140607076	140607076	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018935	exon1	c.G1746A	p.P582P	.	.	.
PCDHGA2	56113	broad.mit.edu	36	5	140700444	140700444	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032009	exon1	c.C1722T	p.G574G	.	.	.
PCDHGA11	56105	broad.mit.edu	36	5	140782999	140782999	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018914	exon1	c.C2021T	p.A674V	.	.	.
RELL2	285613	broad.mit.edu	36	5	141000029	141000029	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130029	exon6	c.G862A	p.D288N	.	.	.
CCDC99	54908	broad.mit.edu	36	5	168961101	168961101	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017785	exon11	c.G1564A	p.V522M	.	.	.
HRH2	3274	broad.mit.edu	36	5	175042908	175042908	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022304	exon1	c.C66T	p.T22T	.	.	.
AP3B1	8546	broad.mit.edu	36	5	77459687	77459687	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003664	exon17	c.A1891C	p.T631P	.	.	.
GRIK2	2898	broad.mit.edu	36	6	102181137	102181137	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021956	exon3	c.G473A	p.R158H	.	.	.
C6orf204	387119	broad.mit.edu	36	6	118909763	118909763	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001178035	exon9	c.G1626T	p.K542N	.	.	.
NOL7	51406	broad.mit.edu	36	6	13724679	13724679	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016167	exon3	c.A333G	p.R111R	.	.	.
TNXB	7148	broad.mit.edu	36	6	32157351	32157351	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019105	exon10	c.G3814A	p.V1272M	.	.	.
RELN	5649	broad.mit.edu	36	7	102994036	102994036	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005045	exon33	c.C4807G	p.Q1603E	.	.	.
THSD7A	221981	broad.mit.edu	36	7	11596783	11596783	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015204	exon4	c.A1282G	p.R428G	.	.	.
C7orf33	202865	broad.mit.edu	36	7	147919050	147919050	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145304	exon1	c.C100T	p.R34C	.	.	.
MACC1	346389	broad.mit.edu	36	7	20164422	20164422	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182762	exon5	c.T2087C	p.V696A	.	.	.
BMPER	168667	broad.mit.edu	36	7	34085136	34085136	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133468	exon12	c.C1221T	p.N407N	.	.	.
SDK1	221935	broad.mit.edu	36	7	3977637	3977637	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152744	exon12	c.C1728T	p.I576I	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48289304	48289304	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152701	exon16	c.C7804T	p.R2602W	.	.	.
COL1A2	1278	broad.mit.edu	36	7	93867490	93867490	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000089	exon5	c.G179A	p.G60D	.	.	.
SNTG1	54212	broad.mit.edu	36	8	51665994	51665995	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018967	exon13	c.813_814insA	p.I271fs	.	.	.
OSR2	116039	broad.mit.edu	36	8	100030596	100030596	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_053001	exon2	c.C240T	p.D80D	.	.	.
RP1L1	94137	broad.mit.edu	36	8	10518054	10518054	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178857	exon2	c.G68A	p.R23H	.	.	.
TG	7038	broad.mit.edu	36	8	133968245	133968245	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003235	exon9	c.G1446T	p.Q482H	.	.	.
PI15	51050	broad.mit.edu	36	8	75918880	75918880	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015886	exon3	c.G383A	p.R128H	.	.	.
TP53INP1	94241	broad.mit.edu	36	8	96011957	96011957	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033285	exon4	c.G649A	p.D217N	.	.	.
ZNF483	158399	broad.mit.edu	36	9	113336397	113336397	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001007169	exon5	c.C664A	p.L222I	.	.	.
PPAPDC3	84814	broad.mit.edu	36	9	133173195	133173195	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032728	exon2	c.C516T	p.Y172Y	.	.	.
KCNT1	57582	broad.mit.edu	36	9	137807071	137807071	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020822	exon20	c.C2338A	p.R780R	.	.	.
PNPLA7	375775	broad.mit.edu	36	9	139556918	139556918	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152286	exon6	c.C588T	p.D196D	.	.	.
PHF2	5253	broad.mit.edu	36	9	95455399	95455399	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005392	exon6	c.C720T	p.C240C	.	.	.
TRPC5	7224	broad.mit.edu	36	X	111042410	111042410	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012471	exon3	c.G665A	p.R222H	.	.	.
HTR2C	3358	broad.mit.edu	36	X	114047541	114047541	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000868	exon6	c.G684A	p.T228T	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123414975	123414975	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014253	exon22	c.A3976G	p.M1326V	.	.	.
DMD	1756	broad.mit.edu	36	X	31657732	31657732	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004021	exon9	c.G217A	p.A73T	.	.	.
HUWE1	10075	broad.mit.edu	36	X	53627562	53627562	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031407	exon42	c.A5201G	p.E1734G	.	.	.