Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PPAPDC1A	196051	broad.mit.edu	36	10	122324676	122324676	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001030059	exon6	c.C489A	p.G163G	.	.	.
KCNMA1	3778	broad.mit.edu	36	10	79067270	79067272	+	In_Frame_Del	DEL	GAG	-	-	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001161353	exon1	c.135_137del	p.45_46del	.	.	.
CDON	50937	broad.mit.edu	36	11	125337006	125337006	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016952	exon19	c.C3454T	p.L1152F	.	.	.
RPUSD4	84881	broad.mit.edu	36	11	125580846	125580846	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032795	exon4	c.G598A	p.V200M	.	.	.
LDHA	3939	broad.mit.edu	36	11	18377589	18377589	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135239	exon3	c.C162T	p.I54I	.	.	.
SYT7	9066	broad.mit.edu	36	11	61075483	61075483	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004200	exon3	c.C164T	p.T55M	.	.	.
KDM2A	22992	broad.mit.edu	36	11	66774499	66774499	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012308	exon17	c.A2422G	p.K808E	.	.	.
C12orf42	374470	broad.mit.edu	36	12	102224131	102224131	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001099336	exon5	c.C382T	p.R128C	.	.	.
TAS2R8	50836	broad.mit.edu	36	12	10850532	10850532	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_023918	exon1	c.C315A	p.V105V	.	.	.
DHH	50846	broad.mit.edu	36	12	47771280	47771280	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021044	exon2	c.G463A	p.D155N	.	.	.
KCNH3	23416	broad.mit.edu	36	12	48230250	48230250	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012284	exon10	c.G1789A	p.A597T	.	.	.
ACVR1B	91	broad.mit.edu	36	12	50661094	50661094	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020327	exon4	c.G499T	p.G167W	.	.	.
NAV3	89795	broad.mit.edu	36	12	77115248	77115248	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014903	exon34	c.C6316G	p.L2106V	.	.	.
SLC6A15	55117	broad.mit.edu	36	12	83791112	83791112	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182767	exon7	c.T994A	p.F332I	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8891506	8891506	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144670	exon15	c.C1778T	p.A593V	.	.	.
NTN4	59277	broad.mit.edu	36	12	94656024	94656024	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021229	exon3	c.C615A	p.Y205X	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66697777	66697777	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020403	exon2	c.C2797G	p.P933A	.	.	.
CDC42BPB	9578	broad.mit.edu	36	14	102548229	102548229	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006035	exon2	c.C225A	p.D75E	.	.	.
CASC5	57082	broad.mit.edu	36	15	38731508	38731508	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_170589	exon22	c.G6406A	p.D2136N	.	.	.
SMAD3	4088	broad.mit.edu	36	15	65260777	65260777	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145103	exon6	c.G671A	p.R224H	.	.	.
TEKT5	146279	broad.mit.edu	36	16	10695983	10695983	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144674	exon1	c.C249T	p.S83S	.	.	.
SPNS1	83985	broad.mit.edu	36	16	28898060	28898060	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142449	exon3	c.C462T	p.A154A	.	.	.
PLEKHG4	25894	broad.mit.edu	36	16	65879914	65879914	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001129727	exon22	c.C3476T	p.S1159L	.	.	.
DHX38	9785	broad.mit.edu	36	16	70697430	70697430	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014003	exon19	c.A2513G	p.D838G	.	.	.
GINS2	51659	broad.mit.edu	36	16	84269362	84269362	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016095	exon5	c.C515T	p.T172M	.	.	.
SOX9	6662	broad.mit.edu	36	17	67631726	67631727	+	Frame_Shift_Ins	INS	-	GG	GG	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000346	exon3	c.1133_1134insGG	p.Q378fs	.	.	.
ALDOC	230	broad.mit.edu	36	17	23925864	23925864	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005165	exon5	c.C517T	p.R173C	.	.	.
C17orf57	124989	broad.mit.edu	36	17	42767685	42767685	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152347	exon5	c.C155T	p.P52L	.	.	.
ENPP7	339221	broad.mit.edu	36	17	75323731	75323731	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178543	exon3	c.C694T	p.R232C	.	.	.
ZNF24	7572	broad.mit.edu	36	18	31171195	31171195	+	Nonstop_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006965	exon4	c.A1106T	p.X369L	.	.	.
COLEC12	81035	broad.mit.edu	36	18	336562	336562	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_130386	exon5	c.G1060T	p.A354S	.	.	.
MAST1	22983	broad.mit.edu	36	19	12842912	12842912	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014975	exon24	c.C3189T	p.P1063P	.	.	.
NWD1	284434	broad.mit.edu	36	19	16721310	16721310	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001007525	exon6	c.C857T	p.T286M	.	.	.
ZNF536	9745	broad.mit.edu	36	19	35627677	35627677	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014717	exon2	c.C1368T	p.G456G	.	.	.
MLL4	9757	broad.mit.edu	36	19	40902538	40902538	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014727	exon3	c.G449A	p.R150Q	.	.	.
KIRREL2	84063	broad.mit.edu	36	19	41048957	41048957	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_199180	exon15	c.A1850G	p.E617G	.	.	.
APLP1	333	broad.mit.edu	36	19	41057553	41057553	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001024807	exon10	c.G1286A	p.R429H	.	.	.
ZNF221	7638	broad.mit.edu	36	19	49163340	49163340	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013359	exon6	c.G1846A	p.A616T	.	.	.
ZC3H4	23211	broad.mit.edu	36	19	52289526	52289526	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015168	exon3	c.A341G	p.E114G	.	.	.
NUCB1	4924	broad.mit.edu	36	19	54114174	54114174	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006184	exon9	c.G892T	p.E298X	.	.	.
SLC6A16	28968	broad.mit.edu	36	19	54506254	54506254	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014037	exon2	c.C163T	p.R55W	.	.	.
SIGLEC8	27181	broad.mit.edu	36	19	56649806	56649806	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014442	exon5	c.C1092T	p.V364V	.	.	.
HAS1	3036	broad.mit.edu	36	19	56908955	56908955	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001523	exon5	c.C1274T	p.A425V	.	.	.
ZNF471	57573	broad.mit.edu	36	19	61721746	61721746	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020813	exon4	c.A244G	p.S82G	.	.	.
ZNF835	90485	broad.mit.edu	36	19	61868125	61868125	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005850	exon2	c.C320T	p.A107V	.	.	.
PRAMEF22	653606	broad.mit.edu	36	1	12959274	12959274	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100631	exon2	c.C759T	p.S253S	.	.	.
FCGR2C	9103	broad.mit.edu	36	1	159836121	159836121	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201563	exon7	c.C876T	p.G292G	.	.	.
LRRC52	440699	broad.mit.edu	36	1	163799515	163799515	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005214	exon2	c.G772A	p.A258T	.	.	.
CEP350	9857	broad.mit.edu	36	1	178260289	178260289	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014810	exon14	c.C3499A	p.R1167S	.	.	.
SYT14	255928	broad.mit.edu	36	1	208340341	208340341	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153262	exon6	c.T1076C	p.V359A	.	.	.
TGFB2	7042	broad.mit.edu	36	1	216603355	216603355	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135599	exon2	c.C403A	p.Q135K	.	.	.
NVL	4931	broad.mit.edu	36	1	222562394	222562394	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002533	exon6	c.A537C	p.P179P	.	.	.
OR2L13	284521	broad.mit.edu	36	1	246329559	246329559	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175911	exon3	c.G259A	p.G87S	.	.	.
ARID1A	8289	broad.mit.edu	36	1	26961284	26961284	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006015	exon7	c.C2306A	p.S769X	.	.	.
CACHD1	57685	broad.mit.edu	36	1	64913746	64913746	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020925	exon20	c.G2649A	p.A883A	.	.	.
SDCBP2	27111	broad.mit.edu	36	20	1241005	1241005	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080489	exon7	c.C708T	p.D236D	.	.	.
ATP9A	10079	broad.mit.edu	36	20	49706913	49706913	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006045	exon14	c.C1477T	p.R493C	.	.	.
KRTAP12-1	353332	broad.mit.edu	36	21	44926257	44926257	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181686	exon1	c.C210G	p.C70W	.	.	.
SLC5A4	6527	broad.mit.edu	36	22	30960946	30960946	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014227	exon8	c.C799T	p.R267X	.	.	.
WNT7B	7477	broad.mit.edu	36	22	44697692	44697692	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_058238	exon4	c.G758A	p.R253H	.	.	.
MLC1	23209	broad.mit.edu	36	22	48857435	48857435	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015166	exon7	c.G559A	p.E187K	.	.	.
SELO	83642	broad.mit.edu	36	22	48991217	48991217	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031454	exon5	c.C1101T	p.S367S	.	.	.
PCDP1	200373	broad.mit.edu	36	2	120104933	120104933	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001029996	exon20	c.C1102A	p.P368T	.	.	.
CXCR4	7852	broad.mit.edu	36	2	136589427	136589427	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003467	exon2	c.G541A	p.D181N	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166567379	166567379	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001165964	exon21	c.A4049G	p.N1350S	.	.	.
TTN	7273	broad.mit.edu	36	2	179103833	179103833	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon186	c.G78559A	p.E26187K	.	.	.
TTN	7273	broad.mit.edu	36	2	179312259	179312259	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon45	c.A12857C	p.K4286T	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206881237	206881237	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020923	exon5	c.C3740A	p.S1247Y	.	.	.
RUFY4	285180	broad.mit.edu	36	2	218648152	218648152	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198483	exon9	c.A692T	p.Q231L	.	.	.
OR6B3	150681	broad.mit.edu	36	2	240633892	240633892	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173351	exon1	c.C271T	p.R91C	.	.	.
FAM134A	79137	broad.mit.edu	36	2	219755251	219755251	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024293	exon9	c.1288delG	p.V430fs	.	.	.
COX17	10063	broad.mit.edu	36	3	120878825	120878825	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005694	exon1	c.A23C	p.N8T	.	.	.
ALDH1L1	10840	broad.mit.edu	36	3	127308694	127308694	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012190	exon21	c.C2433T	p.I811I	.	.	.
P2RY14	9934	broad.mit.edu	36	3	152414108	152414108	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014879	exon3	c.G687T	p.K229N	.	.	.
RFTN1	23180	broad.mit.edu	36	3	16450495	16450495	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015150	exon3	c.G199A	p.A67T	.	.	.
WDR49	151790	broad.mit.edu	36	3	168804866	168804866	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178824	exon2	c.C20T	p.S7L	.	.	.
EIF4A2	1974	broad.mit.edu	36	3	187988358	187988358	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001967	exon10	c.A1072G	p.I358V	.	.	.
STAC	6769	broad.mit.edu	36	3	36509695	36509695	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003149	exon6	c.G736A	p.G246R	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38567081	38567081	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001099405	exon27	c.G5732A	p.R1911H	.	.	.
CTNNB1	1499	broad.mit.edu	36	3	41252280	41252280	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001098210	exon11	c.G1745A	p.R582Q	.	.	.
CADPS	8618	broad.mit.edu	36	3	62442445	62442445	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003716	exon22	c.G3166A	p.D1056N	.	.	.
MAGI1	9223	broad.mit.edu	36	3	65317485	65317485	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001033057	exon23	c.G3997A	p.A1333T	.	.	.
RG9MTD2	93587	broad.mit.edu	36	4	100689318	100689318	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001134665	exon8	c.C970T	p.Q324X	.	.	.
ANK2	287	broad.mit.edu	36	4	114428246	114428246	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020977	exon19	c.G2116A	p.D706N	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153464896	153464896	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018315	exon10	c.C1505T	p.S502L	 FBXW7,large_intestine,colon,Substitution - Missense,0 	.	.
PHOX2B	8929	broad.mit.edu	36	4	41444133	41444133	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003924	exon2	c.C419T	p.A140V	.	.	.
TXK	7294	broad.mit.edu	36	4	47790877	47790877	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003328	exon8	c.T683G	p.I228S	.	.	.
HOPX	84525	broad.mit.edu	36	4	57209655	57209655	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032495	exon4	c.C264T	p.S88S	.	.	.
UGT2B15	7366	broad.mit.edu	36	4	69218630	69218630	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001076	exon1	c.T302C	p.V101A	.	.	.
ARHGAP24	83478	broad.mit.edu	36	4	87140765	87140765	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031305	exon7	c.G1834A	p.E612K	.	.	.
IRF1	3659	broad.mit.edu	36	5	131848049	131848049	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002198	exon9	c.G757C	p.G253R	.	.	.
PCDHB9	56127	broad.mit.edu	36	5	140548146	140548146	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019119	exon1	c.C1070A	p.A357D	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23562337	23562337	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020227	exon11	c.A1383T	p.K461N	.	.	.
DHX29	54505	broad.mit.edu	36	5	54630193	54630193	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019030	exon2	c.G244A	p.D82N	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71527558	71527558	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005909	exon5	c.G2620A	p.E874K	.	.	.
HMGCR	3156	broad.mit.edu	36	5	74686991	74686991	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000859	exon14	c.C1768T	p.R590C	.	.	.
VCAN	1462	broad.mit.edu	36	5	82853807	82853807	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164098	exon7	c.C3926T	p.T1309M	.	.	.
REV3L	5980	broad.mit.edu	36	6	111735424	111735424	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002912	exon31	c.C9085A	p.R3029R	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152514482	152514482	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015293	exon50	c.C7921T	p.R2641W	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160411068	160411068	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000876	exon31	c.C4431T	p.S1477S	.	.	.
C6orf10	10665	broad.mit.edu	36	6	32368782	32368782	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006781	exon23	c.A1646T	p.E549V	.	.	.
CUL9	23113	broad.mit.edu	36	6	43264271	43264271	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015089	exon8	c.C2020T	p.R674C	.	.	.
EYS	346007	broad.mit.edu	36	6	66261535	66261535	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198283	exon3	c.C490T	p.R164X	.	.	.
MGAM	8972	broad.mit.edu	36	7	141401866	141401866	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004668	exon28	c.G3354C	p.M1118I	.	.	.
AMPH	273	broad.mit.edu	36	7	38400139	38400139	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139316	exon17	c.A1473G	p.T491T	.	.	.
WIPI2	26100	broad.mit.edu	36	7	5235872	5235872	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015610	exon12	c.T1229C	p.V410A	.	.	.
ZNF479	90827	broad.mit.edu	36	7	57192132	57192132	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033273	exon5	c.C932A	p.T311N	.	.	.
ZNF479	90827	broad.mit.edu	36	7	57197682	57197682	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033273	exon4	c.G247T	p.V83L	.	.	.
C8orf74	203076	broad.mit.edu	36	8	10592897	10592897	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040032	exon3	c.C620T	p.A207V	.	.	.
ZFPM2	23414	broad.mit.edu	36	8	106883795	106883795	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012082	exon8	c.G2309C	p.C770S	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139959513	139959513	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152888	exon3	c.G320A	p.R107H	.	.	.
C8orf31	286122	broad.mit.edu	36	8	144197485	144197485	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173687	exon4	c.C231T	p.D77D	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2874441	2874441	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033225	exon51	c.G7663A	p.G2555S	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89692113	89692113	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178828	exon4	c.G2891A	p.C964Y	.	.	.
FUNDC2	65991	broad.mit.edu	36	X	153915001	153915001	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_023934	exon2	c.T263G	p.F88C	.	.	.
CDKL5	6792	broad.mit.edu	36	X	18574099	18574099	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003159	exon19	c.G2765A	p.R922K	.	.	.
FGD1	2245	broad.mit.edu	36	X	54513243	54513243	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004463	exon4	c.C1032T	p.D344D	.	.	.