Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target HERC4 26091 broad.mit.edu 36 10 69420911 69420912 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015601 exon12 c.1323_1324insT p.L441fs . . . C10orf71 118461 broad.mit.edu 36 10 50200452 50200453 + Splice_Site INS - AGA AGA novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . PKD2L1 9033 broad.mit.edu 36 10 102048479 102048479 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016112 exon4 c.C561T p.F187F . . . FBXW4 6468 broad.mit.edu 36 10 103423343 103423343 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022039 exon3 c.G434A p.R145H . . . HPS6 79803 broad.mit.edu 36 10 103816678 103816678 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024747 exon1 c.C1457T p.A486V . . . GBF1 8729 broad.mit.edu 36 10 104116245 104116245 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199378 exon19 c.C2425T p.R809C . . . SLK 9748 broad.mit.edu 36 10 105752632 105752632 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014720 exon9 c.C1706T p.T569M . . . SORCS3 22986 broad.mit.edu 36 10 106839579 106839579 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014978 exon6 c.C1085T p.T362M . . . TCF7L2 6934 broad.mit.edu 36 10 114901603 114901603 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146284 exon9 c.C1050T p.S350S . . . DCLRE1A 9937 broad.mit.edu 36 10 115599478 115599478 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014881 exon2 c.C1376T p.P459L . . . PNLIPRP2 5408 broad.mit.edu 36 10 118370818 118370818 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005396 exon2 c.C14A p.P5H . . . WDR11 55717 broad.mit.edu 36 10 122655431 122655431 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018117 exon27 c.C3345T p.H1115H . . . FGFR2 2263 broad.mit.edu 36 10 123266901 123266901 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144916 exon5 c.G661A p.D221N . . . FGFR2 2263 broad.mit.edu 36 10 123300902 123300902 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144916 exon2 c.C171T p.A57A . . . BUB3 9184 broad.mit.edu 36 10 124910045 124910045 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007793 exon5 c.T550C p.C184R . . . DHX32 55760 broad.mit.edu 36 10 127538229 127538229 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018180 exon3 c.G782A p.R261H . . . PTPRE 5791 broad.mit.edu 36 10 129735924 129735924 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130435 exon1 c.T22C p.S8P . . . OPTN 10133 broad.mit.edu 36 10 13214195 13214195 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021980 exon12 c.C1524T p.D508D . . . SUV39H2 79723 broad.mit.edu 36 10 14983148 14983148 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193427 exon5 c.A287G p.N96S . . . CUBN 8029 broad.mit.edu 36 10 16907006 16907006 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081 exon67 c.G10846A p.A3616T . . . CACNB2 783 broad.mit.edu 36 10 18867219 18867219 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201596 exon13 c.T1407C p.S469S . . . ARMC3 219681 broad.mit.edu 36 10 23337773 23337773 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173081 exon16 c.C1952T p.A651V . . . MSRB2 22921 broad.mit.edu 36 10 23433138 23433138 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012228 exon2 c.C178A p.P60T . . . ARHGAP21 57584 broad.mit.edu 36 10 24929833 24929833 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020824 exon14 c.G2880A p.Q960Q . . . ANKRD26 22852 broad.mit.edu 36 10 27366945 27366945 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014915 exon22 c.C2420T p.T807M . . . PITRM1 10531 broad.mit.edu 36 10 3202380 3202380 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014889 exon2 c.G75A p.A25A . . . ITGB1 3688 broad.mit.edu 36 10 33237405 33237405 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133376 exon15 c.T2228C p.I743T . . . PARD3 56288 broad.mit.edu 36 10 34448551 34448551 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184787 exon23 c.C3562T p.P1188S . . . ZNF33A 7581 broad.mit.edu 36 10 38346242 38346242 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006954 exon4 c.C172A p.P58T . . . ZNF33A 7581 broad.mit.edu 36 10 38383829 38383829 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006954 exon5 c.T771C p.C257C . . . RET 5979 broad.mit.edu 36 10 42937404 42937404 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020975 exon16 c.G2735T p.R912L . . . RASSF4 83937 broad.mit.edu 36 10 44787229 44787229 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032023 exon3 c.C65T p.S22L . . . SYT15 83849 broad.mit.edu 36 10 46387718 46387718 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181519 exon4 c.G365A p.C122Y . . . C10orf71 118461 broad.mit.edu 36 10 50201574 50201574 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135196 exon3 c.G978T p.Q326H . . . FAM13C 220965 broad.mit.edu 36 10 60792171 60792171 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001971 exon1 c.T56C p.V19A . . . ARID5B 84159 broad.mit.edu 36 10 63487056 63487056 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032199 exon6 c.C1021T p.R341X . . . VPS26A 9559 broad.mit.edu 36 10 70592267 70592267 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035260 exon6 c.A651G p.T217T . . . AIFM2 84883 broad.mit.edu 36 10 71544724 71544724 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198696 exon8 c.G928A p.V310I . . . SFMBT2 57713 broad.mit.edu 36 10 7279568 7279568 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001029880 exon15 c.C1646T p.A549V . . . USP54 159195 broad.mit.edu 36 10 74946922 74946922 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152586 exon18 c.G3268A p.V1090M . . . SEC24C 9632 broad.mit.edu 36 10 75190079 75190079 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198597 exon5 c.T779A p.M260K . . . MYST4 23522 broad.mit.edu 36 10 76460545 76460545 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012330 exon18 c.T5957C p.M1986T . . . POLR3A 11128 broad.mit.edu 36 10 79412048 79412048 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007055 exon28 c.C3629G p.A1210G . . . RGR 5995 broad.mit.edu 36 10 85997389 85997389 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012720 exon2 c.C142T p.R48W . . . FAM190B 54462 broad.mit.edu 36 10 86263260 86263260 + Missense_Mutation SNP C T T rs61747212 unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018999 exon11 c.C2486T p.T829M . . . LIPK 643414 broad.mit.edu 36 10 90474287 90474287 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080518 exon1 c.C7T p.Q3X . . . ZNF518A 9849 broad.mit.edu 36 10 97906605 97906605 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014803 exon6 c.G536A p.C179Y . . . RRP12 23223 broad.mit.edu 36 10 99121868 99121868 + De_novo_Start_InFrame SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015179 exon20 c.C2295T p.D765D . . . PI4K2A 55361 broad.mit.edu 36 10 99400870 99400870 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018425 exon2 c.C618G p.N206K . . . C10orf28 27291 broad.mit.edu 36 10 99958330 99958330 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014472 exon4 c.G469T p.G157X . . . ARID5B 84159 broad.mit.edu 36 10 63522124 63522124 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032199 exon10 c.2896delA p.K966fs . . . CEP55 55165 broad.mit.edu 36 10 95266734 95266734 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018131 exon6 c.732delA p.A244fs . . . SLIT1 6585 broad.mit.edu 36 10 98789852 98789852 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003061 exon21 c.2180delG p.G727fs . . . ELP4 26610 broad.mit.edu 36 11 31659989 31659990 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . ALKBH8 91801 broad.mit.edu 36 11 106929070 106929070 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138775 exon5 c.T569C p.V190A . . . ATM 472 broad.mit.edu 36 11 107644467 107644467 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000051 exon18 c.C2759T p.A920V . . . C11orf87 399947 broad.mit.edu 36 11 108799856 108799856 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207645 exon2 c.G287T p.R96M . . . RDX 5962 broad.mit.edu 36 11 109623680 109623680 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002906 exon10 c.C1048T p.R350C . . . DLAT 1737 broad.mit.edu 36 11 111421806 111421806 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001931 exon10 c.C1300T p.Q434X . . . NCAM1 4684 broad.mit.edu 36 11 112611065 112611065 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001076682 exon13 c.C1765T p.R589C . . . USP28 57646 broad.mit.edu 36 11 113188255 113188255 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020886 exon16 c.C1925T p.A642V . . . SIK3 23387 broad.mit.edu 36 11 116329997 116329997 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025164 exon3 c.G253A p.E85K . . . CEP164 22897 broad.mit.edu 36 11 116751713 116751713 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014956 exon11 c.G1313A p.R438Q . . . AMICA1 120425 broad.mit.edu 36 11 117579550 117579550 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153206 exon5 c.C545T p.S182F . . . SLC37A4 2542 broad.mit.edu 36 11 118400937 118400937 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164278 exon11 c.A1250T p.H417L . . . DPAGT1 1798 broad.mit.edu 36 11 118473809 118473809 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001382 exon6 c.C883T p.H295Y . . . MUC5B 727897 broad.mit.edu 36 11 1213135 1213135 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002458 exon23 c.C2796T p.H932H . . . OR10S1 219873 broad.mit.edu 36 11 123352924 123352924 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004474 exon1 c.G685A p.V229I . . . OR10G4 390264 broad.mit.edu 36 11 123392029 123392029 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004462 exon1 c.G538A p.A180T . . . ROBO4 54538 broad.mit.edu 36 11 124268809 124268809 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019055 exon10 c.C1532T p.A511V . . . FEZ1 9638 broad.mit.edu 36 11 124856686 124856686 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005103 exon3 c.G365T p.R122M . . . FLI1 2313 broad.mit.edu 36 11 128180508 128180508 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167681 exon6 c.C594T p.G198G . . . KCNJ5 3762 broad.mit.edu 36 11 128286637 128286637 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000890 exon2 c.C259T p.R87C . . . PRDM10 56980 broad.mit.edu 36 11 129336026 129336026 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020228 exon2 c.C44T p.A15V . . . ARNTL 406 broad.mit.edu 36 11 13354828 13354828 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001030273 exon16 c.A1259T p.D420V . . . CALCA 796 broad.mit.edu 36 11 14948153 14948153 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001741 exon3 c.A131T p.E44V . . . CTSD 1509 broad.mit.edu 36 11 1731420 1731420 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001909 exon9 c.G1128A p.P376P . . . E2F8 79733 broad.mit.edu 36 11 19210409 19210409 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024680 exon7 c.C1014T p.G338G . . . RIC8A 60626 broad.mit.edu 36 11 200611 200611 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021932 exon4 c.G767A p.R256Q . . . DBX1 120237 broad.mit.edu 36 11 20135187 20135187 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029865 exon3 c.C644T p.A215V . . . NELL1 4745 broad.mit.edu 36 11 21207561 21207561 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006157 exon14 c.G1534A p.G512R . . . WT1 7490 broad.mit.edu 36 11 32367186 32367186 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198551 exon10 c.G903A p.A301A . . . QSER1 79832 broad.mit.edu 36 11 32911901 32911901 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001076786 exon4 c.T2134G p.L712V . . . C11orf41 25758 broad.mit.edu 36 11 33523372 33523372 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012194 exon2 c.G2366T p.R789L . . . STIM1 6786 broad.mit.edu 36 11 4064320 4064320 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003156 exon11 c.G1512A p.T504T . . . HSD17B12 51144 broad.mit.edu 36 11 43658979 43658979 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016142 exon1 c.G26A p.G9D . . . CRY2 1408 broad.mit.edu 36 11 45834179 45834179 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127457 exon2 c.C103T p.R35W . . . CELF1 10658 broad.mit.edu 36 11 47455085 47455085 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198700 exon10 c.G883T p.G295W . . . FOLH1 2346 broad.mit.edu 36 11 49151579 49151579 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193471 exon11 c.C1086T p.H362H . . . OR51V1 283111 broad.mit.edu 36 11 5177719 5177719 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004760 exon1 c.C788A p.P263H . . . OR51B5 282763 broad.mit.edu 36 11 5320758 5320758 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005567 exon1 c.C573T p.T191T . . . OR4S2 219431 broad.mit.edu 36 11 55175782 55175782 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004059 exon1 c.T827A p.I276N . . . OR5M8 219484 broad.mit.edu 36 11 56014578 56014578 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005282 exon1 c.C845A p.P282H . . . TRIM22 10346 broad.mit.edu 36 11 5674217 5674217 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199573 exon2 c.A179G p.Q60R . . . SERPING1 710 broad.mit.edu 36 11 57138528 57138528 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000062 exon8 c.C1401A p.T467T . . . OR5B3 441608 broad.mit.edu 36 11 57926992 57926992 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005469 exon1 c.T467A p.I156N . . . OR5A2 219981 broad.mit.edu 36 11 58946365 58946365 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001954 exon1 c.T638C p.L213P . . . SCGB1D1 10648 broad.mit.edu 36 11 61716115 61716115 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006552 exon2 c.G67A p.V23I . . . CCKBR 887 broad.mit.edu 36 11 6248504 6248504 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176875 exon4 c.G706A p.V236M . . . LGALS12 85329 broad.mit.edu 36 11 63040346 63040346 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001142536 exon8 c.G889T p.G297W . . . RARRES3 5920 broad.mit.edu 36 11 63068741 63068741 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004585 exon3 c.G191A p.R64H . . . SLC22A12 116085 broad.mit.edu 36 11 64117787 64117787 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153378 exon4 c.C103T p.R35W . . . DNHD1 144132 broad.mit.edu 36 11 6546475 6546475 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144666 exon39 c.G12666A p.V4222V . . . CATSPER1 117144 broad.mit.edu 36 11 65545846 65545846 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053054 exon3 c.C1510A p.L504I . . . KLC2 64837 broad.mit.edu 36 11 65790159 65790159 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134775 exon14 c.G1622T p.R541M . . . ZDHHC24 254359 broad.mit.edu 36 11 66063665 66063665 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207340 exon3 c.G766A p.V256I . . . IGHMBP2 3508 broad.mit.edu 36 11 68458522 68458522 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002180 exon11 c.G1552A p.V518I . . . NLRP14 338323 broad.mit.edu 36 11 7016537 7016537 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176822 exon2 c.T144C p.N48N . . . ARAP1 116985 broad.mit.edu 36 11 72100978 72100978 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040118 exon7 c.G933A p.A311A . . . OLFML1 283298 broad.mit.edu 36 11 7487532 7487532 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198474 exon3 c.G746A p.R249Q . . . OMP 4975 broad.mit.edu 36 11 76491799 76491799 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006189 exon1 c.C266A p.P89H . . . CYB5R2 51700 broad.mit.edu 36 11 7650612 7650612 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016229 exon2 c.G21A p.E7E . . . MYO7A 4647 broad.mit.edu 36 11 76536545 76536545 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127179 exon4 c.G186A p.T62T . . . SYTL2 54843 broad.mit.edu 36 11 85112829 85112829 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206927 exon1 c.G2319A p.S773S . . . SYTL2 54843 broad.mit.edu 36 11 85123222 85123222 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032943 exon7 c.G795A p.A265A . . . CCDC81 60494 broad.mit.edu 36 11 85801111 85801111 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021827 exon10 c.C983A p.P328H . . . FAT3 120114 broad.mit.edu 36 11 92182791 92182791 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008781 exon12 c.C9382A p.P3128T . . . FAT3 120114 broad.mit.edu 36 11 92239815 92239815 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008781 exon21 c.G11919A p.T3973T . . . MED17 9440 broad.mit.edu 36 11 93180415 93180415 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004268 exon10 c.A1550G p.Q517R . . . FOLR4 390243 broad.mit.edu 36 11 93680341 93680341 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199206 exon4 c.C588T p.A196A . . . MAML2 84441 broad.mit.edu 36 11 95351874 95351874 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032427 exon5 c.C3357T p.G1119G . . . DTX4 23220 broad.mit.edu 36 11 58715185 58715185 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015177 exon5 c.1182delA p.L394fs . . . GRM5 2915 broad.mit.edu 36 11 87881553 87881553 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000842 exon9 c.3398delC p.P1133fs . . . WT1-AS 51352 broad.mit.edu 36 11 32417097 32417097 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . NAA25 80018 broad.mit.edu 36 12 111000879 111000880 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024953 exon6 c.527_528insC p.L176fs . . . UTP20 27340 broad.mit.edu 36 12 100287642 100287642 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014503 exon49 c.G6397A p.A2133T . . . CHPT1 56994 broad.mit.edu 36 12 100616001 100616001 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020244 exon1 c.C231A p.T77T . . . HSP90B1 7184 broad.mit.edu 36 12 102850778 102850778 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003299 exon4 c.T339A p.D113E . . . GLT8D2 83468 broad.mit.edu 36 12 102907379 102907379 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031302 exon11 c.C987T p.D329D . . . NUAK1 9891 broad.mit.edu 36 12 104985372 104985372 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014840 exon7 c.C1324A p.L442I . . . CKAP4 10970 broad.mit.edu 36 12 105158022 105158022 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006825 exon2 c.G719A p.R240Q . . . SSH1 54434 broad.mit.edu 36 12 107723069 107723069 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161331 exon9 c.A879G p.K293K . . . ACACB 32 broad.mit.edu 36 12 108061904 108061904 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001093 exon1 c.T311G p.L104R . . . RPH3A 22895 broad.mit.edu 36 12 111816824 111816824 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014954 exon19 c.A1822C p.T608P . . . OAS2 4939 broad.mit.edu 36 12 111930068 111930068 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002535 exon9 c.T1832A p.V611D . . . DDX54 79039 broad.mit.edu 36 12 112101474 112101474 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024072 exon4 c.C421T p.R141W . . . TBX5 6910 broad.mit.edu 36 12 113278162 113278162 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000192 exon9 c.C1115T p.S372L . . . FBXO21 23014 broad.mit.edu 36 12 116099805 116099805 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015002 exon4 c.C495T p.Y165Y . . . WSB2 55884 broad.mit.edu 36 12 116965389 116965389 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018639 exon3 c.A359G p.D120G . . . CCDC60 160777 broad.mit.edu 36 12 118450850 118450850 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178499 exon12 c.T1277A p.V426D . . . CIT 11113 broad.mit.edu 36 12 118635722 118635722 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007174 exon33 c.C4295T p.S1432F . . . GCN1L1 10985 broad.mit.edu 36 12 119061019 119061019 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006836 exon46 c.G6019A p.V2007M . . . WDR66 144406 broad.mit.edu 36 12 120882944 120882944 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178003 exon14 c.C2204T p.A735V . . . IL31 386653 broad.mit.edu 36 12 121224444 121224444 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014336 exon2 c.T65C p.L22P . . . TMED2 10959 broad.mit.edu 36 12 122637365 122637365 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006815 exon2 c.C299T p.T100I . . . GTF2H3 2967 broad.mit.edu 36 12 122710029 122710029 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001516 exon10 c.C629T p.T210M . . . DNAH10 196385 broad.mit.edu 36 12 122855333 122855333 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207437 exon17 c.G2426A p.G809D . . . TMEM132B 114795 broad.mit.edu 36 12 124400206 124400206 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052907 exon2 c.T308C p.L103S . . . SLC15A4 121260 broad.mit.edu 36 12 127860514 127860514 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145648 exon3 c.A938G p.E313G . . . TMEM132D 121256 broad.mit.edu 36 12 128124398 128124398 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133448 exon9 c.T3275C p.M1092T . . . TMEM132D 121256 broad.mit.edu 36 12 128953808 128953808 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133448 exon1 c.G30A p.W10X . . . SFSWAP 6433 broad.mit.edu 36 12 130816667 130816667 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004592 exon13 c.C2003T p.A668V . . . MMP17 4326 broad.mit.edu 36 12 130892195 130892195 + Silent SNP C T T rs17854024 unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016155 exon5 c.C780T p.A260A . . . POLE 5426 broad.mit.edu 36 12 131730525 131730525 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006231 exon33 c.C4261T p.P1421S . . . ANKLE2 23141 broad.mit.edu 36 12 131822159 131822159 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015114 exon9 c.C1606T p.R536C . . . ZNF26 7574 broad.mit.edu 36 12 132098115 132098115 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019591 exon4 c.G1577A p.R526H . . . PTPRO 5800 broad.mit.edu 36 12 15631207 15631207 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002848 exon23 c.G3281A p.R1094Q . . . ADIPOR2 79602 broad.mit.edu 36 12 1760003 1760003 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024551 exon5 c.T589C p.F197L . . . SLCO1B1 10599 broad.mit.edu 36 12 21268951 21268951 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006446 exon14 c.G1776A p.G592G . . . SLCO1A2 6579 broad.mit.edu 36 12 21336426 21336426 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_134431 exon13 c.T1549C p.S517P . . . PYROXD1 79912 broad.mit.edu 36 12 21484613 21484613 + Silent SNP T G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024854 exon2 c.T129G p.A43A . . . IFLTD1 160492 broad.mit.edu 36 12 25590590 25590590 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145727 exon2 c.G224A p.G75D . . . RASSF8 11228 broad.mit.edu 36 12 26108840 26108840 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007211 exon4 c.G246A p.P82P . . . FOXM1 2305 broad.mit.edu 36 12 2848095 2848095 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_202003 exon4 c.C741T p.F247F . . . OVCH1 341350 broad.mit.edu 36 12 29521568 29521568 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183378 exon11 c.G1219A p.V407I . . . IPO8 10526 broad.mit.edu 36 12 30683776 30683776 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006390 exon21 c.C2429A p.P810H . . . IPO8 10526 broad.mit.edu 36 12 30709448 30709448 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006390 exon13 c.G1401A p.L467L . . . CAPRIN2 65981 broad.mit.edu 36 12 30754515 30754515 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002259 exon18 c.C2972A p.P991H . . . PKP2 5318 broad.mit.edu 36 12 32846642 32846642 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004572 exon11 c.G2261T p.R754M . . . PRMT8 56341 broad.mit.edu 36 12 3529487 3529487 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019854 exon3 c.C386A p.A129D . . . TWF1 5756 broad.mit.edu 36 12 42479488 42479488 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002822 exon5 c.C565T p.R189X . . . ARID2 196528 broad.mit.edu 36 12 44540902 44540902 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152641 exon16 c.A4825G p.S1609G . . . SRSF2IP 9169 broad.mit.edu 36 12 44608414 44608414 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004719 exon11 c.G1337A p.C446Y . . . VDR 7421 broad.mit.edu 36 12 46525052 46525052 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000376 exon10 c.G1028A p.R343H . . . COL2A1 1280 broad.mit.edu 36 12 46666396 46666396 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033150 exon22 c.C1310T p.P437L . . . GALNT8 26290 broad.mit.edu 36 12 4706218 4706218 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017417 exon2 c.G471A p.L157L . . . MLL2 8085 broad.mit.edu 36 12 47717915 47717915 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003482 exon34 c.G9491A p.R3164Q . . . C1QL4 338761 broad.mit.edu 36 12 48016051 48016051 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008223 exon1 c.C477T p.H159H . . . BIN2 51411 broad.mit.edu 36 12 49972201 49972201 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016293 exon10 c.A956G p.E319G . . . KRT84 3890 broad.mit.edu 36 12 51065238 51065238 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033045 exon1 c.A399G p.A133A . . . KRT4 3851 broad.mit.edu 36 12 51487706 51487706 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002272 exon7 c.C1557T p.G519G . . . OR6C75 390323 broad.mit.edu 36 12 54045553 54045553 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005497 exon1 c.C392T p.T131I . . . ITGA7 3679 broad.mit.edu 36 12 54368945 54368945 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144997 exon22 c.G2629A p.A877T . . . MYL6B 140465 broad.mit.edu 36 12 54835520 54835520 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199629 exon5 c.G397A p.A133T . . . ANKRD52 283373 broad.mit.edu 36 12 54932269 54932269 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173595 exon14 c.T1468C p.C490R . . . GLS2 27165 broad.mit.edu 36 12 55153317 55153317 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013267 exon14 c.C1411T p.R471W . . . BAZ2A 11176 broad.mit.edu 36 12 55279367 55279367 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013449 exon27 c.C5221T p.R1741C . . . BAZ2A 11176 broad.mit.edu 36 12 55283663 55283663 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013449 exon17 c.C3133T p.R1045W . . . PTGES3 10728 broad.mit.edu 36 12 55353004 55353004 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006601 exon2 c.A115G p.S39G . . . LRP1 4035 broad.mit.edu 36 12 55878332 55878332 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002332 exon59 c.A9409G p.T3137A . . . ANO2 57101 broad.mit.edu 36 12 5594723 5594723 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020373 exon18 c.G1818A p.E606E . . . INHBE 83729 broad.mit.edu 36 12 56136490 56136490 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031479 exon2 c.G645A p.Q215Q INHBE,breast,NS,Substitution - Missense,0 . . ARHGAP9 64333 broad.mit.edu 36 12 56155418 56155418 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080156 exon10 c.G923A p.R308H . . . CDK4 1019 broad.mit.edu 36 12 56428614 56428614 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000075 exon8 c.G873A p.Q291Q . . . AVIL 10677 broad.mit.edu 36 12 56486513 56486513 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006576 exon13 c.C1568T p.S523F . . . C12orf66 144577 broad.mit.edu 36 12 62874574 62874574 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152440 exon3 c.G653A p.S218N . . . TNFRSF1A 7132 broad.mit.edu 36 12 6312516 6312516 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001065 exon5 c.C531T p.N177N . . . WIF1 11197 broad.mit.edu 36 12 63800497 63800497 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007191 exon2 c.T255C p.H85H . . . CD27 939 broad.mit.edu 36 12 6430028 6430028 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001242 exon4 c.C509A p.P170H . . . GNB3 2784 broad.mit.edu 36 12 6822439 6822439 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002075 exon5 c.G141A p.T47T . . . FRS2 10818 broad.mit.edu 36 12 68254388 68254388 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042555 exon10 c.G913A p.V305M . . . CLSTN3 9746 broad.mit.edu 36 12 7186745 7186745 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014718 exon11 c.G1554A p.S518S . . . CEP290 80184 broad.mit.edu 36 12 87006986 87006986 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025114 exon31 c.T3983C p.L1328P . . . ATP2B1 490 broad.mit.edu 36 12 88509033 88509033 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001682 exon20 c.A3522G p.K1174K . . . PHC1 1911 broad.mit.edu 36 12 8961555 8961555 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004426 exon2 c.C15T p.S5S . . . HAL 3034 broad.mit.edu 36 12 94908312 94908312 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002108 exon10 c.A845G p.D282G . . . CDK17 5128 broad.mit.edu 36 12 95207141 95207141 + Silent SNP T C C rs45574339 unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002595 exon11 c.A1053G p.T351T . . . USP15 9958 broad.mit.edu 36 12 61081265 61081265 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006313 exon20 c.2619delA p.G873fs . . . COL4A2 1284 broad.mit.edu 36 13 109954324 109954325 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001846 exon44 c.4268_4269insC p.G1423fs . . . CUL4A 8451 broad.mit.edu 36 13 112965888 112965888 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008895 exon20 c.C2271T p.Y757Y . . . TMCO3 55002 broad.mit.edu 36 13 113198009 113198009 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017905 exon2 c.G112A p.G38R . . . SACS 26278 broad.mit.edu 36 13 22809376 22809376 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014363 exon10 c.C6639T p.I2213I . . . C1QTNF9B 387911 broad.mit.edu 36 13 23369047 23369047 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007537 exon1 c.C79T p.H27Y . . . USPL1 10208 broad.mit.edu 36 13 30103574 30103574 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005800 exon4 c.T831A p.N277K . . . HSPH1 10808 broad.mit.edu 36 13 30617802 30617802 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006644 exon11 c.G1482A p.T494T . . . RXFP2 122042 broad.mit.edu 36 13 31230518 31230518 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166058 exon2 c.A218G p.N73S . . . BRCA2 675 broad.mit.edu 36 13 31798641 31798641 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000059 exon7 c.T522C p.R174R . . . MAB21L1 4081 broad.mit.edu 36 13 34947870 34947870 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005584 exon1 c.G406T p.V136L . . . FAM48A 55578 broad.mit.edu 36 13 36501971 36501971 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017569 exon13 c.G927A p.V309V . . . TRPC4 7223 broad.mit.edu 36 13 37164412 37164412 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135957 exon4 c.G958T p.G320C . . . FREM2 341640 broad.mit.edu 36 13 38163704 38163704 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207361 exon1 c.G4223A p.R1408H . . . AKAP11 11215 broad.mit.edu 36 13 41773393 41773393 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016248 exon8 c.T2511C p.C837C . . . COG3 83548 broad.mit.edu 36 13 45006844 45006844 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031431 exon23 c.C2464A p.L822I . . . INTS6 26512 broad.mit.edu 36 13 50846379 50846379 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012141 exon15 c.G2070A p.Q690Q . . . NEK3 4752 broad.mit.edu 36 13 51623347 51623347 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146099 exon7 c.C483A p.T161T . . . PCDH8 5100 broad.mit.edu 36 13 52316990 52316990 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032949 exon3 c.C2628T p.N876N . . . KLHL1 57626 broad.mit.edu 36 13 69579775 69579775 + Nonsense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020866 exon1 c.A58T p.K20X . . . TBC1D4 9882 broad.mit.edu 36 13 74834169 74834169 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014832 exon2 c.C1074T p.L358L . . . SLAIN1 122060 broad.mit.edu 36 13 77233208 77233208 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144595 exon5 c.T804C p.S268S . . . EDNRB 1910 broad.mit.edu 36 13 77390481 77390481 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T T T T Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001122659 exon1 c.A229G p.T77A . . . POU4F1 5457 broad.mit.edu 36 13 78075388 78075388 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006237 exon1 c.G75A p.L25L . . . SLITRK6 84189 broad.mit.edu 36 13 85268320 85268320 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032229 exon2 c.A325G p.N109D . . . GPR180 160897 broad.mit.edu 36 13 94069479 94069479 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_180989 exon4 c.C580T p.Q194X . . . MBNL2 10150 broad.mit.edu 36 13 96816723 96816723 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144778 exon8 c.T1004C p.M335T . . . FARP1 10160 broad.mit.edu 36 13 97845519 97845519 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005766 exon13 c.C1202T p.A401V . . . DOCK9 23348 broad.mit.edu 36 13 98247397 98247397 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015296 exon54 c.G6170T p.R2057M . . . CLYBL 171425 broad.mit.edu 36 13 99316647 99316647 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206808 exon6 c.G787T p.A263S . . . PCCA 5095 broad.mit.edu 36 13 99713070 99713070 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001178004 exon10 c.G803A p.R268H . . . BRCA2 675 broad.mit.edu 36 13 31811436 31811436 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000059 exon11 c.4944delA p.A1648fs . . . BTBD7 55727 broad.mit.edu 36 14 92830945 92830946 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001002860 exon3 c.174_175insA p.K58fs . . . HSP90AA1 3320 broad.mit.edu 36 14 101619351 101619351 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005348 exon9 c.C1528T p.R510C . . . TEP1 7011 broad.mit.edu 36 14 19924164 19924164 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007110 exon20 c.G2892A p.E964E . . . METT11D1 64745 broad.mit.edu 36 14 20534215 20534215 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022734 exon12 c.A1004G p.H335R . . . NDRG2 57447 broad.mit.edu 36 14 20558522 20558522 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016250 exon8 c.G486T p.K162N . . . PRMT5 10419 broad.mit.edu 36 14 22463979 22463979 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006109 exon8 c.C888A p.A296A . . . CDH24 64403 broad.mit.edu 36 14 22594257 22594257 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022478 exon3 c.T347C p.V116A . . . HOMEZ 57594 broad.mit.edu 36 14 22815133 22815133 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020834 exon2 c.C1144T p.R382W . . . LRRC16B 90668 broad.mit.edu 36 14 23599756 23599756 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138360 exon25 c.A2141G p.E714G . . . TINF2 26277 broad.mit.edu 36 14 23779680 23779680 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012461 exon6 c.C846A p.R282R . . . CIDEB 27141 broad.mit.edu 36 14 23845109 23845109 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014430 exon6 c.C411T p.D137D . . . NOVA1 4857 broad.mit.edu 36 14 25987238 25987238 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002515 exon5 c.A1291G p.N431D . . . PRKD1 5587 broad.mit.edu 36 14 29171845 29171845 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002742 exon9 c.C1373T p.T458I . . . SCFD1 23256 broad.mit.edu 36 14 30212272 30212272 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182835 exon11 c.G853T p.E285X . . . FAM177A1 283635 broad.mit.edu 36 14 34592373 34592373 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173607 exon2 c.C304A p.L102M . . . RALGAPA1 253959 broad.mit.edu 36 14 35211869 35211869 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194301 exon24 c.A3510G p.T1170T . . . MBIP 51562 broad.mit.edu 36 14 35853865 35853865 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016586 exon3 c.T257C p.L86S . . . C14orf106 55320 broad.mit.edu 36 14 44781441 44781441 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018353 exon4 c.A689T p.N230I . . . TRIM9 114088 broad.mit.edu 36 14 50630862 50630862 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052978 exon1 c.C546T p.C182C . . . TXNDC16 57544 broad.mit.edu 36 14 52074128 52074128 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020784 exon5 c.A256G p.K86E . . . WDHD1 11169 broad.mit.edu 36 14 54499458 54499458 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007086 exon19 c.A2493G p.E831E . . . PELI2 57161 broad.mit.edu 36 14 55833325 55833325 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021255 exon6 c.C951T p.H317H . . . SYT16 83851 broad.mit.edu 36 14 61620695 61620695 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031914 exon5 c.C1463T p.A488V . . . SYNE2 23224 broad.mit.edu 36 14 63666372 63666372 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015180 exon75 c.G14139T p.E4713D . . . SYNE2 23224 broad.mit.edu 36 14 63739395 63739395 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015180 exon100 c.C18162T p.C6054C . . . SYNE2 23224 broad.mit.edu 36 14 63750760 63750760 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182913 exon1 c.C54T p.S18S . . . RDH12 145226 broad.mit.edu 36 14 67262554 67262554 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152443 exon6 c.C377T p.A126V . . . RGS6 9628 broad.mit.edu 36 14 72054862 72054862 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004296 exon15 c.C1142T p.A381V . . . C14orf43 91748 broad.mit.edu 36 14 73257809 73257809 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001043318 exon11 c.C2881T p.R961C . . . LTBP2 4053 broad.mit.edu 36 14 74045705 74045705 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000428 exon22 c.A3392T p.D1131V . . . SEL1L 6400 broad.mit.edu 36 14 81023543 81023543 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005065 exon16 c.G1576A p.A526T . . . FLRT2 23768 broad.mit.edu 36 14 85159591 85159591 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013231 exon2 c.G1980A p.T660T . . . TDP1 55775 broad.mit.edu 36 14 89525047 89525047 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008744 exon10 c.C1177T p.P393S . . . CPSF2 53981 broad.mit.edu 36 14 91692669 91692669 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017437 exon12 c.T1536C p.D512D . . . RIN3 79890 broad.mit.edu 36 14 92195488 92195488 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024832 exon7 c.C2256A p.A752A . . . KIAA1409 57578 broad.mit.edu 36 14 93158897 93158897 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020818 exon30 c.C5034A p.I1678I . . . HHIPL1 84439 broad.mit.edu 36 14 99188860 99188860 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032425 exon2 c.G802A p.V268I . . . TRAF3 7187 broad.mit.edu 36 14 102433379 102433379 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145725 exon10 c.848delA p.E283fs . . . FOXN3 1112 broad.mit.edu 36 14 88948287 88948287 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001085471 exon2 c.287delC p.P96fs . . . CYFIP1 23191 broad.mit.edu 36 15 20554449 20554449 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014608 exon31 c.C3730T p.P1244S . . . NIPA2 81614 broad.mit.edu 36 15 20557747 20557747 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008860 exon7 c.A998C p.N333T . . . SNRPN 6638 broad.mit.edu 36 15 22758373 22758373 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005678 exon2 c.C34T p.R12X . . . ATP10A 57194 broad.mit.edu 36 15 23477056 23477056 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024490 exon19 c.A3672C p.K1224N . . . RYR3 6263 broad.mit.edu 36 15 31552939 31552939 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon2 c.G79A p.A27T . . . RYR3 6263 broad.mit.edu 36 15 31827722 31827722 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon54 c.A8105G p.E2702G . . . RYR3 6263 broad.mit.edu 36 15 31906195 31906195 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon84 c.C11195T p.T3732M . . . ZNF770 54989 broad.mit.edu 36 15 33061400 33061400 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014106 exon3 c.A1528G p.K510E . . . MEIS2 4212 broad.mit.edu 36 15 35177550 35177550 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170676 exon2 c.G155A p.G52D . . . THBS1 7057 broad.mit.edu 36 15 37661701 37661701 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003246 exon3 c.A83G p.N28S . . . GPR176 11245 broad.mit.edu 36 15 37880928 37880928 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007223 exon3 c.G1245A p.G415G . . . INO80 54617 broad.mit.edu 36 15 39124500 39124500 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017553 exon24 c.C2801T p.A934V . . . EPB42 2038 broad.mit.edu 36 15 41288236 41288236 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114134 exon7 c.G862A p.V288M . . . ZSCAN29 146050 broad.mit.edu 36 15 41440601 41440601 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152455 exon5 c.G2521A p.A841T . . . ZSCAN29 146050 broad.mit.edu 36 15 41448553 41448553 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152455 exon2 c.A383T p.Q128L . . . ZSCAN29 146050 broad.mit.edu 36 15 41449258 41449258 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152455 exon1 c.C146T p.P49L . . . GATM 2628 broad.mit.edu 36 15 43441664 43441664 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001482 exon9 c.G1207A p.G403R . . . SPATA5L1 79029 broad.mit.edu 36 15 43494146 43494146 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024063 exon4 c.C1520T p.P507L . . . FBN1 2200 broad.mit.edu 36 15 46561255 46561255 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000138 exon32 c.G3853A p.D1285N . . . SHC4 399694 broad.mit.edu 36 15 47042257 47042257 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_203349 exon1 c.T248C p.L83P . . . USP8 9101 broad.mit.edu 36 15 48569854 48569854 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128611 exon15 c.A2074G p.T692A . . . SPPL2A 84888 broad.mit.edu 36 15 48799586 48799586 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032802 exon14 c.A1331G p.Y444C . . . CYP19A1 1588 broad.mit.edu 36 15 49322320 49322320 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031226 exon3 c.G82A p.V28I . . . MYO5C 55930 broad.mit.edu 36 15 50319329 50319329 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018728 exon21 c.G2596A p.A866T . . . UNC13C 440279 broad.mit.edu 36 15 52401482 52401482 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080534 exon12 c.T4322C p.M1441T . . . RNF111 54778 broad.mit.edu 36 15 57174290 57174290 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017610 exon14 c.C2860T p.H954Y . . . TPM1 7168 broad.mit.edu 36 15 61149151 61149151 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018008 exon8 c.C694T p.R232C . . . HERC1 8925 broad.mit.edu 36 15 61814044 61814044 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003922 exon13 c.C2578T p.R860W . . . PLEKHO2 80301 broad.mit.edu 36 15 62944801 62944801 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001195059 exon5 c.G984T p.W328C . . . SMAD3 4088 broad.mit.edu 36 15 65269827 65269827 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145103 exon9 c.C1045A p.P349T SMAD3,large_intestine,colon,Substitution - Missense,-1 . . CORO2B 10391 broad.mit.edu 36 15 66790231 66790231 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006091 exon4 c.C440T p.P147L . . . KIF23 9493 broad.mit.edu 36 15 67501825 67501825 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004856 exon6 c.G560A p.S187N . . . TMEM202 338949 broad.mit.edu 36 15 70486584 70486584 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080462 exon4 c.G591A p.W197X . . . NEO1 4756 broad.mit.edu 36 15 71196169 71196169 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172623 exon2 c.T366C p.P122P . . . C15orf60 283677 broad.mit.edu 36 15 71522665 71522665 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042367 exon1 c.G86A p.C29Y . . . SCAPER 49855 broad.mit.edu 36 15 74854268 74854268 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145923 exon9 c.C280A p.L94I . . . LINGO1 84894 broad.mit.edu 36 15 75693594 75693594 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032808 exon2 c.C1710T p.G570G . . . IREB2 3658 broad.mit.edu 36 15 76567682 76567682 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004136 exon15 c.G1900A p.A634T . . . KIAA1024 23251 broad.mit.edu 36 15 77535631 77535631 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015206 exon2 c.C87T p.D29D . . . FAM108C1 58489 broad.mit.edu 36 15 78829036 78829036 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021214 exon2 c.C718T p.R240C . . . C15orf26 161502 broad.mit.edu 36 15 79214670 79214670 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173528 exon2 c.T74G p.L25R . . . IL16 3603 broad.mit.edu 36 15 79380878 79380878 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172128 exon15 c.G3288A p.E1096E . . . C15orf40 123207 broad.mit.edu 36 15 81468357 81468357 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160113 exon3 c.C313T p.R105W . . . AGBL1 123624 broad.mit.edu 36 15 84741752 84741752 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152336 exon17 c.G2388A p.M796I . . . ACAN 176 broad.mit.edu 36 15 87202537 87202537 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135 exon12 c.G5717A p.G1906E . . . HAPLN3 145864 broad.mit.edu 36 15 87225842 87225842 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178232 exon3 c.G243A p.P81P . . . C15orf42 90381 broad.mit.edu 36 15 87928644 87928644 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152259 exon3 c.C1058T p.T353M . . . SEMA4B 10509 broad.mit.edu 36 15 88572581 88572581 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198925 exon14 c.G2216T p.R739L . . . FURIN 5045 broad.mit.edu 36 15 89220726 89220726 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002569 exon4 c.C307T p.R103X . . . MEF2A 4205 broad.mit.edu 36 15 98029091 98029091 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171894 exon6 c.A299G p.D100G . . . LASS3 204219 broad.mit.edu 36 15 98813743 98813743 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178842 exon12 c.T877C p.Y293H . . . LRRK1 79705 broad.mit.edu 36 15 99346452 99346452 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024652 exon5 c.C524T p.T175M . . . KLHL25 64410 broad.mit.edu 36 15 84113612 84113612 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022480 exon2 c.434delT p.F145fs . . . TEKT5 146279 broad.mit.edu 36 16 10637164 10637164 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144674 exon6 c.G1199A p.R400Q . . . ERCC4 2072 broad.mit.edu 36 16 13949124 13949124 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005236 exon11 c.G2170T p.V724L . . . ABCC6 368 broad.mit.edu 36 16 16199469 16199469 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171 exon10 c.C1248T p.D416D . . . XYLT1 64131 broad.mit.edu 36 16 17142569 17142569 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022166 exon7 c.C1529T p.T510I . . . ZP2 7783 broad.mit.edu 36 16 21118488 21118488 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003460 exon16 c.G1831A p.V611I . . . GGA2 23062 broad.mit.edu 36 16 23414563 23414563 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015044 exon2 c.G129A p.W43X . . . ARHGAP17 55114 broad.mit.edu 36 16 24878574 24878574 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006634 exon9 c.T643C p.L215L . . . SRRM2 23524 broad.mit.edu 36 16 2752539 2752539 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016333 exon11 c.G2009A p.R670H . . . TUFM 7284 broad.mit.edu 36 16 28761871 28761871 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003321 exon10 c.C1294A p.R432R . . . TBC1D10B 26000 broad.mit.edu 36 16 30277039 30277039 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015527 exon9 c.C2154T p.S718S . . . ZNF768 79724 broad.mit.edu 36 16 30443356 30443356 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024671 exon2 c.G1606A p.A536T . . . ZNF764 92595 broad.mit.edu 36 16 30474064 30474064 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172679 exon3 c.G1176A p.P392P . . . ZNF688 146542 broad.mit.edu 36 16 30490314 30490314 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145271 exon1 c.G138A p.A46A . . . SETD1A 9739 broad.mit.edu 36 16 30884664 30884664 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014712 exon8 c.C1961T p.P654L . . . SETD1A 9739 broad.mit.edu 36 16 30898251 30898251 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014712 exon14 c.G3643A p.A1215T . . . HSD3B7 80270 broad.mit.edu 36 16 30905491 30905491 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025193 exon5 c.G496A p.A166T . . . STX1B 112755 broad.mit.edu 36 16 30912041 30912041 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052874 exon9 c.G697A p.E233K . . . ZNF205 7755 broad.mit.edu 36 16 3106468 3106468 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042428 exon5 c.C403T p.R135W . . . ZNF75A 7627 broad.mit.edu 36 16 3307640 3307640 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153028 exon6 c.T661C p.W221R . . . NMRAL1 57407 broad.mit.edu 36 16 4459450 4459450 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020677 exon3 c.G58A p.V20M . . . VPS35 55737 broad.mit.edu 36 16 45270562 45270562 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018206 exon6 c.A514G p.T172A . . . ABCC11 85320 broad.mit.edu 36 16 46770070 46770070 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145186 exon24 c.G3287A p.R1096Q . . . ZNF500 26048 broad.mit.edu 36 16 4742787 4742787 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021646 exon6 c.G1034A p.R345H . . . NKD1 85407 broad.mit.edu 36 16 49140854 49140854 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033119 exon3 c.G79A p.A27T . . . NKD1 85407 broad.mit.edu 36 16 49216956 49216956 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033119 exon6 c.G426A p.L142L . . . SEC14L5 9717 broad.mit.edu 36 16 4949369 4949369 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014692 exon2 c.C44T p.P15L . . . SLC12A3 6559 broad.mit.edu 36 16 55470981 55470981 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000339 exon11 c.G1362A p.A454A . . . NLRC5 84166 broad.mit.edu 36 16 55617675 55617675 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032206 exon6 c.T1319C p.M440T . . . ARL2BP 23568 broad.mit.edu 36 16 55840033 55840033 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012106 exon3 c.T184C p.Y62H . . . MMP15 4324 broad.mit.edu 36 16 56631345 56631345 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002428 exon4 c.G506A p.R169H . . . CCDC113 29070 broad.mit.edu 36 16 56849920 56849920 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142302 exon3 c.C376T p.R126C . . . FHOD1 29109 broad.mit.edu 36 16 65829527 65829527 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013241 exon6 c.G553T p.G185C . . . KCTD19 146212 broad.mit.edu 36 16 65885540 65885540 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100915 exon12 c.C1626T p.C542C . . . FAM65A 79567 broad.mit.edu 36 16 66133412 66133412 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001193522 exon13 c.G1234A p.E412K . . . TSNAXIP1 55815 broad.mit.edu 36 16 66415039 66415039 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018430 exon5 c.G235T p.E79X . . . WWP2 11060 broad.mit.edu 36 16 68479612 68479612 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199423 exon9 c.G873A p.Q291Q . . . IL34 146433 broad.mit.edu 36 16 69251127 69251127 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172771 exon6 c.C505T p.R169W . . . HYDIN 54768 broad.mit.edu 36 16 69685315 69685315 + Missense_Mutation SNP C T T rs7200485 byCluster;byFrequency;by2Hit2Allele;byHapMap TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon11 c.G1352A p.R451Q . . . ZNF19 7567 broad.mit.edu 36 16 70067202 70067202 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006961 exon6 c.G749C p.C250S . . . CHST4 10164 broad.mit.edu 36 16 70128507 70128507 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166395 exon2 c.A426G p.P142P . . . AP1G1 164 broad.mit.edu 36 16 70330725 70330725 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001030007 exon21 c.G2029A p.A677T . . . ZNF821 55565 broad.mit.edu 36 16 70451807 70451807 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017530 exon6 c.G728A p.R243Q . . . DHODH 1723 broad.mit.edu 36 16 70603634 70603634 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001361 exon2 c.G206A p.R69Q . . . CLEC18B 497190 broad.mit.edu 36 16 73000985 73000985 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011880 exon12 c.C1294T p.R432C . . . GLG1 2734 broad.mit.edu 36 16 73087856 73087856 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145666 exon4 c.A929G p.E310G . . . ADAMTS18 170692 broad.mit.edu 36 16 75959008 75959008 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199355 exon4 c.C609T p.Y203Y . . . VAT1L 57687 broad.mit.edu 36 16 76380284 76380284 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020927 exon1 c.C204T p.D68D . . . SLC38A8 146167 broad.mit.edu 36 16 82600925 82600925 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080442 exon10 c.C1273A p.Q425K . . . ZDHHC7 55625 broad.mit.edu 36 16 83581645 83581645 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017740 exon3 c.G81A p.S27S . . . ZC3H18 124245 broad.mit.edu 36 16 87193755 87193755 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144604 exon6 c.G986T p.R329M . . . CHMP1A 5119 broad.mit.edu 36 16 88245517 88245517 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083314 exon2 c.G46A p.G16R . . . FANCA 2175 broad.mit.edu 36 16 88361131 88361131 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000135 exon27 c.A2520G p.A840A . . . DNAJA3 9093 broad.mit.edu 36 16 4438737 4438737 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001135110 exon9 c.1128delC p.I376fs . . . MYH8 4626 broad.mit.edu 36 17 10264080 10264080 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002472 exon3 c.G190A p.V64I . . . MYH4 4622 broad.mit.edu 36 17 10299729 10299729 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017533 exon19 c.G2101A p.G701S . . . NCOR1 9611 broad.mit.edu 36 17 15935989 15935989 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190440 exon21 c.C2977T p.R993W . . . RTN4RL1 146760 broad.mit.edu 36 17 1786956 1786956 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178568 exon2 c.T910C p.C304R . . . MYO15A 51168 broad.mit.edu 36 17 17995457 17995457 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016239 exon39 c.C7678T p.R2560W . . . TOP3A 7156 broad.mit.edu 36 17 18143621 18143621 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004618 exon9 c.C967T p.R323W . . . FBXW10 10517 broad.mit.edu 36 17 18616665 18616665 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031456 exon12 c.T2222C p.L741P . . . GRAP 10750 broad.mit.edu 36 17 18868271 18868271 + Silent SNP G A A rs9893211 byHapMap TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006613 exon4 c.C450T p.D150D . . . SPECC1 92521 broad.mit.edu 36 17 20049441 20049441 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033555 exon2 c.G1244A p.R415Q . . . MAP2K3 5606 broad.mit.edu 36 17 21158119 21158119 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002756 exon12 c.T941C p.L314P . . . NLK 51701 broad.mit.edu 36 17 23542313 23542313 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_016231 exon9 c.C1376A p.T459N . . . SARM1 23098 broad.mit.edu 36 17 23735526 23735526 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015077 exon3 c.C1111T p.P371S . . . FOXN1 8456 broad.mit.edu 36 17 23885507 23885507 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003593 exon6 c.G959A p.R320Q . . . RAP1GAP2 23108 broad.mit.edu 36 17 2813920 2813920 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015085 exon7 c.G300A p.P100P . . . ACACA 31 broad.mit.edu 36 17 32619490 32619490 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198834 exon39 c.G4616A p.R1539H . . . DUSP14 11072 broad.mit.edu 36 17 32946763 32946763 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007026 exon3 c.C276A p.T92T . . . GPR179 440435 broad.mit.edu 36 17 33736346 33736346 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004334 exon11 c.C6632T p.A2211V . . . SRCIN1 80725 broad.mit.edu 36 17 33972600 33972600 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025248 exon6 c.G823A p.G275R . . . TRPV1 7442 broad.mit.edu 36 17 3427181 3427181 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018727 exon12 c.G1768A p.G590R . . . NEUROD2 4761 broad.mit.edu 36 17 35016118 35016118 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006160 exon2 c.G261A p.E87E . . . PGAP3 93210 broad.mit.edu 36 17 35095765 35095765 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033419 exon2 c.G215A p.C72Y . . . PSMD3 5709 broad.mit.edu 36 17 35405208 35405208 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002809 exon9 c.C1222T p.R408C . . . ITGAE 3682 broad.mit.edu 36 17 3603954 3603954 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002208 exon13 c.G1399A p.V467M . . . KRT28 162605 broad.mit.edu 36 17 36208121 36208121 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181535 exon3 c.C582T p.N194N . . . KRT23 25984 broad.mit.edu 36 17 36346109 36346109 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015515 exon2 c.C273T p.R91R . . . ATP6V0A1 535 broad.mit.edu 36 17 37899897 37899897 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130021 exon12 c.G1194A p.T398T . . . FAM134C 162427 broad.mit.edu 36 17 38014696 38014696 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178126 exon1 c.C173T p.A58V . . . SLC4A1 6521 broad.mit.edu 36 17 39691479 39691479 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000342 exon10 c.G915T p.G305G . . . ANKFY1 51479 broad.mit.edu 36 17 4034927 4034927 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016376 exon12 c.C1634T p.T545M . . . ITGA3 3675 broad.mit.edu 36 17 45511199 45511199 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002204 exon19 c.G2310A p.R770R . . . KIF1C 10749 broad.mit.edu 36 17 4864663 4864663 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006612 exon20 c.C1903T p.Q635X . . . MPO 4353 broad.mit.edu 36 17 53704188 53704188 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000250 exon11 c.G1857A p.T619T . . . BZRAP1 9256 broad.mit.edu 36 17 53752480 53752480 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004758 exon12 c.G1483A p.D495N . . . RNF43 54894 broad.mit.edu 36 17 53847795 53847795 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017763 exon2 c.T143C p.I48T . . . VPS53 55275 broad.mit.edu 36 17 547465 547465 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128159 exon4 c.T228C p.D76D . . . MED13 9969 broad.mit.edu 36 17 57397344 57397344 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005121 exon20 c.T4649C p.V1550A . . . MARCH10 162333 broad.mit.edu 36 17 58219587 58219587 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100875 exon3 c.T196G p.S66A . . . TANC2 26115 broad.mit.edu 36 17 58836285 58836285 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025185 exon18 c.G3180T p.V1060V . . . CACNG5 27091 broad.mit.edu 36 17 62311534 62311534 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014404 exon4 c.C864T p.S288S . . . CACNG4 27092 broad.mit.edu 36 17 62457572 62457572 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014405 exon4 c.C974T p.T325I . . . ABCA8 10351 broad.mit.edu 36 17 64425149 64425149 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007168 exon15 c.G1966A p.A656T . . . ASGR2 433 broad.mit.edu 36 17 6945734 6945734 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001181 exon9 c.G820A p.G274R . . . SAP30BP 29115 broad.mit.edu 36 17 71175142 71175142 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013260 exon1 c.G95A p.G32D . . . SLC2A4 6517 broad.mit.edu 36 17 7128607 7128607 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042 exon7 c.T807C p.R269R . . . NEURL4 84461 broad.mit.edu 36 17 7166798 7166798 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032442 exon16 c.C2705T p.S902F . . . MFSD11 79157 broad.mit.edu 36 17 72275118 72275118 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024311 exon10 c.T738C p.T246T . . . CHD3 1107 broad.mit.edu 36 17 7750952 7750952 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005852 exon30 c.C4544T p.P1515L . . . C17orf68 80169 broad.mit.edu 36 17 8079910 8079910 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025099 exon7 c.C1170T p.G390G . . . ABR 29 broad.mit.edu 36 17 922635 922635 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021962 exon8 c.G863A p.R288H . . . WDR16 146845 broad.mit.edu 36 17 9479561 9479561 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145054 exon11 c.G1435A p.A479T . . . USP43 124739 broad.mit.edu 36 17 9545543 9545543 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153210 exon12 c.G1812A p.T604T . . . APOH 350 broad.mit.edu 36 17 61643489 61643489 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000042 exon6 c.663delA p.K221fs . . . C18orf19 125228 broad.mit.edu 36 18 13672057 13672057 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152352 exon2 c.G20A p.R7Q . . . NPC1 4864 broad.mit.edu 36 18 19369456 19369456 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000271 exon22 c.C3452T p.A1151V . . . OSBPL1A 114876 broad.mit.edu 36 18 20166973 20166973 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080597 exon7 c.C556T p.R186W . . . AQP4 361 broad.mit.edu 36 18 22690333 22690333 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001650 exon5 c.A812G p.Q271R . . . CDH2 1000 broad.mit.edu 36 18 23819696 23819696 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001792 exon12 c.C1769T p.T590M . . . FAM59A 64762 broad.mit.edu 36 18 28121871 28121871 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022751 exon4 c.G687A p.M229I . . . ZSCAN30 100101467 broad.mit.edu 36 18 31098144 31098144 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001112734 exon2 c.T171C p.S57S . . . COLEC12 81035 broad.mit.edu 36 18 336456 336456 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130386 exon5 c.T1166C p.L389P . . . ST8SIA5 29906 broad.mit.edu 36 18 42514431 42514431 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013305 exon7 c.G703A p.V235M . . . KATNAL2 83473 broad.mit.edu 36 18 42881318 42881318 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031303 exon15 c.G1345A p.A449T . . . ZBTB7C 201501 broad.mit.edu 36 18 43820723 43820723 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039360 exon2 c.G754A p.A252T . . . MYO5B 4645 broad.mit.edu 36 18 45685166 45685166 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080467 exon20 c.G2445T p.A815A . . . DCC 1630 broad.mit.edu 36 18 48843728 48843728 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005215 exon6 c.T1041A p.D347E . . . NEDD4L 23327 broad.mit.edu 36 18 54184324 54184324 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015277 exon20 c.G1887A p.W629X . . . NEDD4L 23327 broad.mit.edu 36 18 54186053 54186053 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015277 exon21 c.C2099T p.A700V . . . ZNF532 55205 broad.mit.edu 36 18 54736721 54736721 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018181 exon4 c.C222T p.S74S . . . HMSD 284293 broad.mit.edu 36 18 59772667 59772667 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001123366 exon3 c.C118T p.R40X . . . FBXO15 201456 broad.mit.edu 36 18 69891711 69891711 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152676 exon10 c.G1270A p.A424T . . . ZNF407 55628 broad.mit.edu 36 18 70472682 70472682 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146190 exon1 c.C719T p.P240L . . . ZNF407 55628 broad.mit.edu 36 18 70718266 70718266 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017757 exon4 c.T5003C p.L1668P . . . ZNF236 7776 broad.mit.edu 36 18 72749318 72749318 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007345 exon14 c.C2346T p.D782D . . . ADNP2 22850 broad.mit.edu 36 18 75995366 75995366 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014913 exon4 c.G1079A p.G360E . . . KIAA0802 23255 broad.mit.edu 36 18 8783003 8783003 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015210 exon8 c.G1895C p.G632A . . . TWSG1 57045 broad.mit.edu 36 18 9389374 9389374 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020648 exon5 c.A521G p.D174G . . . CDC37 11140 broad.mit.edu 36 19 10367775 10367775 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007065 exon2 c.G207T p.K69N . . . DOCK6 57572 broad.mit.edu 36 19 11214977 11214977 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020812 exon12 c.G1343A p.G448D . . . ZNF20 7568 broad.mit.edu 36 19 12104917 12104917 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021143 exon4 c.A1084G p.T362A . . . LPHN1 22859 broad.mit.edu 36 19 14133287 14133287 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014921 exon6 c.G1347A p.L449L . . . EMR3 84658 broad.mit.edu 36 19 14609918 14609918 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032571 exon11 c.C1483T p.R495X . . . NOTCH3 4854 broad.mit.edu 36 19 15134350 15134350 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000435 exon32 c.G5839A p.A1947T . . . CYP4F12 66002 broad.mit.edu 36 19 15652241 15652241 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023944 exon5 c.G437A p.R146H . . . SIN3B 23309 broad.mit.edu 36 19 16818795 16818795 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015260 exon5 c.C597T p.N199N . . . GTPBP3 84705 broad.mit.edu 36 19 17310472 17310472 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032620 exon4 c.G513A p.A171A . . . GLT25D1 79709 broad.mit.edu 36 19 17539290 17539290 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024656 exon4 c.G565A p.A189T . . . MAP1S 55201 broad.mit.edu 36 19 17692799 17692799 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018174 exon2 c.A173G p.K58R . . . UBA52 7311 broad.mit.edu 36 19 18546701 18546701 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033930 exon4 c.T212C p.L71S . . . UPF1 5976 broad.mit.edu 36 19 18833856 18833856 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002911 exon18 c.G2495A p.R832H . . . NCAN 1463 broad.mit.edu 36 19 19190890 19190890 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004386 exon3 c.G240T p.K80N . . . HAPLN4 404037 broad.mit.edu 36 19 19230425 19230425 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023002 exon4 c.G724A p.G242S . . . ZNF430 80264 broad.mit.edu 36 19 21031796 21031796 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001172671 exon5 c.T839C p.I280T . . . ZNF676 163223 broad.mit.edu 36 19 22156090 22156090 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001411 exon3 c.A269G p.E90G . . . ZNF675 171392 broad.mit.edu 36 19 23627982 23627982 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138330 exon4 c.T1593C p.T531T . . . TSHZ3 57616 broad.mit.edu 36 19 36462317 36462317 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020856 exon2 c.C222T p.S74S . . . GPATCH1 55094 broad.mit.edu 36 19 38276953 38276953 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018025 exon5 c.G491A p.G164D . . . UBA2 10054 broad.mit.edu 36 19 39627762 39627762 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005499 exon8 c.G667A p.E223K . . . LGI4 163175 broad.mit.edu 36 19 40314773 40314773 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139284 exon4 c.A328G p.N110D . . . FXYD5 53827 broad.mit.edu 36 19 40340186 40340186 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001164605 exon3 c.G84A p.T28T . . . ARHGAP33 115703 broad.mit.edu 36 19 40963017 40963017 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052948 exon7 c.C566T p.A189V . . . NPHS1 4868 broad.mit.edu 36 19 41026315 41026315 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004646 exon17 c.C2233A p.L745I . . . ZNF790 388536 broad.mit.edu 36 19 42001700 42001700 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206894 exon5 c.C1386T p.G462G . . . SHD 56961 broad.mit.edu 36 19 4231101 4231101 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020209 exon1 c.G41A p.R14Q . . . ZNF585B 92285 broad.mit.edu 36 19 42372446 42372446 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152279 exon4 c.A249G p.E83E . . . ZNF540 163255 broad.mit.edu 36 19 42794675 42794675 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152606 exon5 c.G654C p.E218D . . . DPF1 8193 broad.mit.edu 36 19 43398864 43398864 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135156 exon8 c.C582A p.A194A . . . KCNK6 9424 broad.mit.edu 36 19 43509256 43509256 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004823 exon2 c.C506T p.A169V . . . GGN 199720 broad.mit.edu 36 19 43569044 43569044 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152657 exon3 c.C698T p.A233V . . . RYR1 6261 broad.mit.edu 36 19 43685051 43685051 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042723 exon48 c.C7679T p.P2560L . . . CHAF1A 10036 broad.mit.edu 36 19 4381604 4381604 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005483 exon11 c.A1913G p.H638R . . . SUPT5H 6829 broad.mit.edu 36 19 44652679 44652679 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003169 exon16 c.C1455T p.F485F . . . DYRK1B 9149 broad.mit.edu 36 19 45010804 45010804 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006483 exon6 c.C780T p.F260F . . . FBL 2091 broad.mit.edu 36 19 45021565 45021565 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001436 exon5 c.G499A p.G167R . . . FCGBP 8857 broad.mit.edu 36 19 45072126 45072126 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003890 exon23 c.G11029A p.V3677M . . . GRIK5 2901 broad.mit.edu 36 19 47249664 47249664 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002088 exon10 c.A1199T p.N400I . . . PSG9 5678 broad.mit.edu 36 19 48457881 48457881 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002784 exon3 c.G680A p.R227H . . . C19orf61 56006 broad.mit.edu 36 19 48946696 48946696 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019108 exon2 c.G38T p.G13V . . . UHRF1 29128 broad.mit.edu 36 19 4895462 4895462 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001048201 exon9 c.G1305T p.Q435H . . . ZNF45 7596 broad.mit.edu 36 19 49110757 49110757 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003425 exon10 c.C671T p.A224V . . . PVRL2 5819 broad.mit.edu 36 19 50067176 50067176 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002856 exon3 c.G705A p.T235T . . . VASP 7408 broad.mit.edu 36 19 50719733 50719733 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003370 exon11 c.A1022G p.Y341C . . . STRN4 29888 broad.mit.edu 36 19 51925935 51925935 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039877 exon6 c.G773A p.G258D . . . ZC3H4 23211 broad.mit.edu 36 19 52289130 52289130 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015168 exon4 c.G429A p.S143S . . . CABP5 56344 broad.mit.edu 36 19 53234377 53234377 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019855 exon4 c.G248A p.R83H . . . CCDC114 93233 broad.mit.edu 36 19 53498839 53498839 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144577 exon8 c.G757A p.E253K . . . GRIN2D 2906 broad.mit.edu 36 19 53616982 53616982 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000836 exon10 c.C2220T p.R740R . . . SULT2B1 6820 broad.mit.edu 36 19 53794270 53794270 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004605 exon6 c.G848A p.R283H . . . CA11 770 broad.mit.edu 36 19 53840697 53840697 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001217 exon1 c.G5C p.G2A . . . SLC17A7 57030 broad.mit.edu 36 19 54628007 54628007 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020309 exon8 c.G890A p.R297H . . . IZUMO2 126123 broad.mit.edu 36 19 55354316 55354316 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152358 exon4 c.G398A p.C133Y . . . KCNC3 3748 broad.mit.edu 36 19 55518698 55518698 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004977 exon2 c.C1324T p.R442C . . . POLD1 5424 broad.mit.edu 36 19 55596964 55596964 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002691 exon4 c.C434A p.A145D . . . GPR32 2854 broad.mit.edu 36 19 55966640 55966640 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001506 exon1 c.A971G p.Q324R . . . KLK7 5650 broad.mit.edu 36 19 56172699 56172699 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005046 exon6 c.A667C p.T223P . . . SIGLEC9 27180 broad.mit.edu 36 19 56322195 56322195 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198558 exon4 c.C845A p.P282H . . . SIGLEC8 27181 broad.mit.edu 36 19 56650484 56650484 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014442 exon4 c.G1051T p.G351C . . . ZNF534 147658 broad.mit.edu 36 19 57629162 57629162 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143939 exon2 c.G158A p.R53H . . . FUT6 2528 broad.mit.edu 36 19 5782897 5782897 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040701 exon2 c.C682A p.L228M . . . CACNG8 59283 broad.mit.edu 36 19 59158352 59158352 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031895 exon1 c.C144T p.R48R . . . LILRB5 10990 broad.mit.edu 36 19 59449733 59449733 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081442 exon8 c.G1317T p.E439D . . . NLRP7 199713 broad.mit.edu 36 19 60143322 60143322 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139176 exon4 c.T677C p.L226P . . . BRSK1 84446 broad.mit.edu 36 19 60492673 60492673 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032430 exon4 c.G331T p.E111X . . . USP29 57663 broad.mit.edu 36 19 62331994 62331994 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020903 exon4 c.T139A p.F47I . . . AURKC 6795 broad.mit.edu 36 19 62434479 62434479 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001015878 exon1 c.C51T p.G17G . . . ZNF304 57343 broad.mit.edu 36 19 62559495 62559495 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020657 exon3 c.A446G p.D149G . . . ZNF548 147694 broad.mit.edu 36 19 62601995 62601995 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152909 exon3 c.C528T p.S176S . . . ZNF416 55659 broad.mit.edu 36 19 62779024 62779024 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017879 exon3 c.C162T p.R54R . . . ZNF134 7693 broad.mit.edu 36 19 62824567 62824567 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003435 exon3 c.C1268T p.T423I . . . ZSCAN1 284312 broad.mit.edu 36 19 63256974 63256974 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182572 exon6 c.G970A p.E324K . . . SLC25A23 79085 broad.mit.edu 36 19 6393163 6393163 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024103 exon10 c.C1230T p.I410I . . . C3 718 broad.mit.edu 36 19 6629194 6629194 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000064 exon40 c.C4819T p.L1607F . . . INSR 3643 broad.mit.edu 36 19 7218509 7218509 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000208 exon2 c.G499A p.V167M . . . CLEC4M 10332 broad.mit.edu 36 19 7736886 7736886 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001144904 exon4 c.G424T p.G142C . . . ELAVL1 1994 broad.mit.edu 36 19 7934533 7934533 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001419 exon6 c.A815G p.N272S . . . MED16 10025 broad.mit.edu 36 19 836862 836862 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005481 exon5 c.C787A p.L263M . . . MUC16 94025 broad.mit.edu 36 19 8920163 8920163 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.A28283G p.E9428G . . . MUC16 94025 broad.mit.edu 36 19 8922421 8922421 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.A26025G p.P8675P . . . MUC16 94025 broad.mit.edu 36 19 8924557 8924557 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.C23889A p.P7963P . . . MUC16 94025 broad.mit.edu 36 19 8935664 8935664 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.C12782A p.P4261H . . . ZNF317 57693 broad.mit.edu 36 19 9132707 9132707 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190791 exon6 c.C1290A p.T430T . . . ZNF559 84527 broad.mit.edu 36 19 9314515 9314515 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032497 exon6 c.G1388T p.R463M . . . ICAM1 3383 broad.mit.edu 36 19 10256602 10256602 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000201 exon6 c.1324delG p.G442fs . . . BRD4 23476 broad.mit.edu 36 19 15214819 15214819 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_058243 exon14 c.3061delC p.H1021fs . . . C19orf76 199800 broad.mit.edu 36 19 54885546 54885546 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001101340 exon2 c.446delC p.S149fs . . . ZSCAN18 65982 broad.mit.edu 36 19 63288468 63288468 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001145542 exon7 c.1097delC p.P366fs . . . PNPLA6 10908 broad.mit.edu 36 19 7531960 7531960 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001166111 exon32 c.3907delC p.P1303fs . . . SASS6 163786 broad.mit.edu 36 1 100323713 100323713 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194292 exon16 c.C1834T p.R612C . . . S1PR1 1901 broad.mit.edu 36 1 101477913 101477913 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001400 exon2 c.T785C p.L262P . . . COL11A1 1301 broad.mit.edu 36 1 103316823 103316823 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001854 exon3 c.C467G p.T156S . . . KIAA1324 57535 broad.mit.edu 36 1 109542220 109542220 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020775 exon17 c.G2399T p.R800M . . . PSMA5 5686 broad.mit.edu 36 1 109757267 109757267 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199774 exon4 c.T63C p.S21S . . . GSTM4 2948 broad.mit.edu 36 1 110003184 110003184 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147148 exon7 c.C496A p.L166I . . . OVGP1 5016 broad.mit.edu 36 1 111767799 111767799 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002557 exon5 c.T372C p.V124V . . . MTOR 2475 broad.mit.edu 36 1 11187214 11187214 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004958 exon26 c.C3935T p.P1312L . . . ST7L 54879 broad.mit.edu 36 1 112942130 112942130 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138728 exon5 c.G608A p.R203H . . . HIPK1 204851 broad.mit.edu 36 1 114301321 114301321 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198269 exon6 c.T523C p.Y175H . . . TRIM45 80263 broad.mit.edu 36 1 117464939 117464939 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145635 exon1 c.C408T p.D136D . . . VTCN1 79679 broad.mit.edu 36 1 117500743 117500743 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024626 exon3 c.G421A p.A141T . . . TNFRSF8 943 broad.mit.edu 36 1 12087041 12087041 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001243 exon4 c.C287T p.T96M . . . VPS13D 55187 broad.mit.edu 36 1 12239041 12239041 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018156 exon8 c.C734T p.S245F . . . VPS13D 55187 broad.mit.edu 36 1 12345450 12345450 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018156 exon50 c.C10154A p.S3385Y . . . NUDT17 200035 broad.mit.edu 36 1 144298008 144298008 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012758 exon8 c.G925T p.G309W . . . PLEKHO1 51177 broad.mit.edu 36 1 148398195 148398195 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016274 exon6 c.G1083T p.E361D . . . ADAMTSL4 54507 broad.mit.edu 36 1 148792986 148792986 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019032 exon6 c.C895T p.P299S . . . TCHH 7062 broad.mit.edu 36 1 150346569 150346569 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007113 exon2 c.C5748T p.G1916G . . . TCHH 7062 broad.mit.edu 36 1 150348464 150348464 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007113 exon2 c.C3853T p.R1285C . . . FLG 2312 broad.mit.edu 36 1 150550255 150550255 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002016 exon3 c.C3731T p.A1244V . . . FLG2 388698 broad.mit.edu 36 1 150590663 150590663 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014342 exon3 c.C6223T p.Q2075X . . . CRNN 49860 broad.mit.edu 36 1 150649983 150649983 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016190 exon3 c.G199T p.G67W . . . NPR1 4881 broad.mit.edu 36 1 151926143 151926143 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000906 exon12 c.C1891A p.L631M . . . PBXIP1 57326 broad.mit.edu 36 1 153184805 153184805 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020524 exon10 c.C1969T p.R657W . . . GBA 2629 broad.mit.edu 36 1 153473975 153473975 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000157 exon7 c.T780C p.A260A . . . YY1AP1 55249 broad.mit.edu 36 1 153915836 153915836 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198906 exon4 c.C311A p.P104H . . . TMEM79 84283 broad.mit.edu 36 1 154522004 154522004 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032323 exon2 c.G363A p.L121L . . . TTC24 164118 broad.mit.edu 36 1 154822897 154822897 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105669 exon11 c.G1680A p.W560X . . . SH2D2A 9047 broad.mit.edu 36 1 155050676 155050676 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161443 exon3 c.G259T p.G87W . . . ARHGEF11 9826 broad.mit.edu 36 1 155208164 155208164 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198236 exon8 c.G651A p.R217R . . . FCRL1 115350 broad.mit.edu 36 1 156038349 156038349 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159398 exon5 c.C866T p.A289V . . . CDK11B 984 broad.mit.edu 36 1 1563054 1563054 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033486 exon13 c.C1391T p.P464L . . . OR6N1 128372 broad.mit.edu 36 1 157002604 157002604 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005185 exon1 c.C493T p.R165C . . . NCSTN 23385 broad.mit.edu 36 1 158585440 158585440 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015331 exon3 c.T218A p.I73N . . . NCSTN 23385 broad.mit.edu 36 1 158590588 158590588 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015331 exon11 c.C1236A p.I412I . . . RSC1A1 6248 broad.mit.edu 36 1 15859752 15859752 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006511 exon1 c.C802T p.Q268X . . . SLAMF7 57823 broad.mit.edu 36 1 158986380 158986380 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021181 exon3 c.C522T p.S174S . . . USP21 27005 broad.mit.edu 36 1 159397329 159397329 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012475 exon2 c.G275A p.G92D . . . SPEN 23013 broad.mit.edu 36 1 16130935 16130935 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015001 exon11 c.G5613T p.E1871D . . . DUSP27 92235 broad.mit.edu 36 1 165361768 165361768 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080426 exon5 c.G776A p.R259Q . . . GPR161 23432 broad.mit.edu 36 1 166332643 166332643 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153832 exon5 c.C826A p.L276I . . . DPT 1805 broad.mit.edu 36 1 166964880 166964880 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001937 exon1 c.G157T p.G53W . . . BLZF1 8548 broad.mit.edu 36 1 167618001 167618001 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003666 exon6 c.C875T p.T292I . . . F5 2153 broad.mit.edu 36 1 167788465 167788465 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000130 exon8 c.G1250T p.G417V . . . SELE 6401 broad.mit.edu 36 1 167965398 167965398 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000450 exon6 c.C756T p.F252F . . . SCYL3 57147 broad.mit.edu 36 1 168098491 168098491 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181093 exon10 c.C1027T p.L343F . . . BAT2L2 23215 broad.mit.edu 36 1 169768302 169768302 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015172 exon12 c.C1445T p.A482V . . . C1orf9 51430 broad.mit.edu 36 1 170814111 170814111 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014283 exon14 c.A1391T p.Q464L . . . TNR 7143 broad.mit.edu 36 1 173638965 173638965 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003285 exon4 c.C910T p.R304X . . . FAM163A 148753 broad.mit.edu 36 1 178048886 178048886 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173509 exon4 c.G31A p.G11R . . . STX6 10228 broad.mit.edu 36 1 179225743 179225743 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005819 exon5 c.G489A p.Q163Q . . . CACNA1E 777 broad.mit.edu 36 1 179946808 179946808 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000721 exon8 c.G1151A p.R384H . . . ZNF648 127665 broad.mit.edu 36 1 180292706 180292706 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009992 exon2 c.C1063T p.R355C . . . NPL 80896 broad.mit.edu 36 1 181041917 181041917 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030769 exon4 c.G157T p.G53X . . . LAMC1 3915 broad.mit.edu 36 1 181350386 181350386 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002293 exon5 c.C1119T p.N373N . . . RGL1 23179 broad.mit.edu 36 1 182161934 182161934 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015149 exon19 c.G2297A p.R766H . . . EDEM3 80267 broad.mit.edu 36 1 182948262 182948262 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025191 exon14 c.C1464A p.I488I . . . RNF2 6045 broad.mit.edu 36 1 183333939 183333939 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007212 exon5 c.A577T p.S193C . . . C1orf25 81627 broad.mit.edu 36 1 183355949 183355949 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030934 exon15 c.G2027A p.R676H . . . TPR 7175 broad.mit.edu 36 1 184572252 184572252 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003292 exon33 c.T4704C p.A1568A . . . KIAA1751 85452 broad.mit.edu 36 1 1887715 1887715 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080484 exon12 c.G1356T p.E452D . . . UBR4 23352 broad.mit.edu 36 1 19352479 19352479 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020765 exon46 c.C6735T p.N2245N . . . UBR4 23352 broad.mit.edu 36 1 19385678 19385678 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020765 exon14 c.G1693A p.D565N . . . CFH 3075 broad.mit.edu 36 1 194911788 194911788 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000186 exon4 c.G397A p.G133R . . . CFH 3075 broad.mit.edu 36 1 194915407 194915407 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000186 exon6 c.T651C p.N217N . . . CFH 3075 broad.mit.edu 36 1 194915468 194915468 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000186 exon6 c.A712G p.N238D . . . PTPRC 5788 broad.mit.edu 36 1 196991715 196991715 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080921 exon30 c.C3214T p.Q1072X . . . CAMSAP1L1 23271 broad.mit.edu 36 1 199084392 199084392 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203459 exon11 c.C1872T p.D624D . . . IGFN1 91156 broad.mit.edu 36 1 199454294 199454294 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164586 exon18 c.G9783A p.T3261T . . . KLHL12 59349 broad.mit.edu 36 1 201146926 201146926 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021633 exon5 c.C596T p.A199V . . . CYB5R1 51706 broad.mit.edu 36 1 201201657 201201657 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016243 exon4 c.A326G p.Y109C . . . PPFIA4 8497 broad.mit.edu 36 1 201291209 201291209 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015053 exon3 c.C338T p.T113M . . . MAPKAPK2 9261 broad.mit.edu 36 1 204970726 204970726 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032960 exon6 c.C762A p.Y254X . . . PFKFB2 5208 broad.mit.edu 36 1 205307578 205307578 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018053 exon9 c.G744A p.Q248Q . . . PFKFB2 5208 broad.mit.edu 36 1 205310271 205310271 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018053 exon12 c.G1116A p.R372R . . . ATF3 467 broad.mit.edu 36 1 210859351 210859351 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001674 exon4 c.C377T p.A126V . . . PTPN14 5784 broad.mit.edu 36 1 212624622 212624622 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005401 exon13 c.C1199T p.S400L . . . USH2A 7399 broad.mit.edu 36 1 214490979 214490979 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon12 c.T2056A p.L686M . . . EPRS 2058 broad.mit.edu 36 1 218237257 218237257 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004446 exon18 c.T2232G p.C744W . . . RAB3GAP2 25782 broad.mit.edu 36 1 218410986 218410986 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012414 exon24 c.C2677T p.L893L . . . MARK1 4139 broad.mit.edu 36 1 218819471 218819471 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018650 exon2 c.G204T p.K68N . . . CNIH3 149111 broad.mit.edu 36 1 222988935 222988935 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152495 exon5 c.C359T p.P120L . . . ACBD3 64746 broad.mit.edu 36 1 224406701 224406701 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022735 exon7 c.G1333A p.V445M . . . CDC42BPA 8476 broad.mit.edu 36 1 225285633 225285633 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014826 exon26 c.C3416T p.A1139V . . . OBSCN 84033 broad.mit.edu 36 1 226605766 226605766 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052843 exon78 c.G18541A p.E6181K . . . NUP133 55746 broad.mit.edu 36 1 227680046 227680046 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018230 exon13 c.G1677A p.R559R . . . EPHA8 2046 broad.mit.edu 36 1 22788304 22788304 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006943 exon5 c.G1333A p.V445I . . . GALNT2 2590 broad.mit.edu 36 1 228405513 228405513 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004481 exon3 c.A228G p.V76V . . . COG2 22796 broad.mit.edu 36 1 228865555 228865555 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007357 exon4 c.C346T p.R116X . . . TTC13 79573 broad.mit.edu 36 1 229126293 229126293 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024525 exon15 c.C1731T p.D577D . . . GNPAT 8443 broad.mit.edu 36 1 229473136 229473136 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014236 exon10 c.C1289A p.P430H . . . EPHB2 2048 broad.mit.edu 36 1 22983651 22983651 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017449 exon3 c.C306T p.S102S . . . HTR1D 3352 broad.mit.edu 36 1 23392802 23392802 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000864 exon1 c.C498A p.S166S . . . MTR 4548 broad.mit.edu 36 1 235121128 235121128 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000254 exon29 c.G3080A p.R1027Q . . . RYR2 6262 broad.mit.edu 36 1 235778445 235778445 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon26 c.G2998A p.A1000T . . . GALE 2582 broad.mit.edu 36 1 23997789 23997789 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000403 exon4 c.A140T p.E47V . . . WDR64 128025 broad.mit.edu 36 1 240017793 240017793 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144625 exon23 c.G2695A p.G899R . . . CEP170 9859 broad.mit.edu 36 1 241455175 241455175 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042405 exon2 c.A31T p.S11C . . . AHCTF1 25909 broad.mit.edu 36 1 245080708 245080708 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015446 exon33 c.G5250A p.T1750T . . . ZNF496 84838 broad.mit.edu 36 1 245530981 245530981 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032752 exon9 c.G1227A p.P409P . . . OR2C3 81472 broad.mit.edu 36 1 245762087 245762087 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198074 exon2 c.C350T p.A117V . . . OR2W3 343171 broad.mit.edu 36 1 246126106 246126106 + Missense_Mutation SNP G A A rs61756679 unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001957 exon1 c.G595A p.V199I . . . OR2AK2 391191 broad.mit.edu 36 1 246195677 246195677 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004491 exon1 c.A421G p.I141V . . . OR2L13 284521 broad.mit.edu 36 1 246329770 246329770 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175911 exon3 c.C470T p.A157V . . . OR2T33 391195 broad.mit.edu 36 1 246503278 246503278 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004695 exon1 c.G462A p.G154G . . . ZNF593 51042 broad.mit.edu 36 1 26369675 26369675 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015871 exon3 c.C286T p.P96S . . . SDC3 9672 broad.mit.edu 36 1 31122370 31122370 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014654 exon3 c.C486A p.T162T . . . CCDC28B 79140 broad.mit.edu 36 1 32443408 32443408 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024296 exon6 c.C575T p.A192V . . . AK2 204 broad.mit.edu 36 1 33252749 33252749 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001625 exon5 c.C459T p.H153H . . . TRIM62 55223 broad.mit.edu 36 1 33398068 33398068 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018207 exon3 c.G569A p.R190H . . . GJB5 2709 broad.mit.edu 36 1 34996214 34996214 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005268 exon2 c.C696T p.H232H . . . WDR8 49856 broad.mit.edu 36 1 3542404 3542404 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017818 exon6 c.C567T p.N189N . . . EIF2C1 26523 broad.mit.edu 36 1 36131996 36131996 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012199 exon5 c.A647G p.D216G . . . EIF2C3 192669 broad.mit.edu 36 1 36293236 36293236 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177422 exon16 c.C1675T p.R559C . . . GRIK3 2899 broad.mit.edu 36 1 37098085 37098085 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000831 exon6 c.C907T p.R303W . . . MEAF6 64769 broad.mit.edu 36 1 37747648 37747648 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022756 exon3 c.G289A p.A97T . . . CDCA8 55143 broad.mit.edu 36 1 37941549 37941549 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018101 exon8 c.G527A p.R176Q . . . MANEAL 149175 broad.mit.edu 36 1 38038048 38038048 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152496 exon2 c.C294T p.D98D . . . BMP8A 353500 broad.mit.edu 36 1 39761359 39761359 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181809 exon6 c.G1042A p.A348T . . . SCMH1 22955 broad.mit.edu 36 1 41287060 41287060 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172218 exon12 c.C982T p.R328C . . . HIVEP3 59269 broad.mit.edu 36 1 41751661 41751661 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024503 exon8 c.C5818T p.P1940S . . . PTPRF 5792 broad.mit.edu 36 1 43857945 43857945 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130440 exon28 c.C4913T p.A1638V . . . CCDC24 149473 broad.mit.edu 36 1 44230493 44230493 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152499 exon3 c.T149A p.L50H . . . NSUN4 387338 broad.mit.edu 36 1 46599957 46599957 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199044 exon6 c.T1007C p.V336A . . . MOBKL2C 148932 broad.mit.edu 36 1 46851448 46851448 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145279 exon2 c.C289T p.R97C . . . CYP4A11 1579 broad.mit.edu 36 1 47179624 47179624 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000778 exon1 c.C69A p.S23S . . . NRD1 4898 broad.mit.edu 36 1 52066115 52066115 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002525 exon7 c.T1085C p.F362S . . . ZFYVE9 9372 broad.mit.edu 36 1 52531937 52531937 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007324 exon10 c.C3073T p.L1025F . . . ZFYVE9 9372 broad.mit.edu 36 1 52584362 52584362 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007324 exon18 c.C3982T p.Q1328X . . . SLC1A7 6512 broad.mit.edu 36 1 53353113 53353113 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006671 exon3 c.C336A p.S112S . . . DMRTB1 63948 broad.mit.edu 36 1 53703044 53703044 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033067 exon3 c.G897A p.P299P . . . C1orf168 199920 broad.mit.edu 36 1 56961912 56961912 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004303 exon17 c.G1911T p.K637N . . . DAB1 1600 broad.mit.edu 36 1 57383599 57383599 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021080 exon5 c.C159T p.S53S . . . CHD5 26038 broad.mit.edu 36 1 6103830 6103830 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015557 exon33 c.G4834A p.A1612T . . . DOCK7 85440 broad.mit.edu 36 1 62892277 62892277 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033407 exon3 c.T286C p.C96R . . . JAK1 3716 broad.mit.edu 36 1 65105199 65105199 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002227 exon7 c.G928A p.V310I . . . PTGER3 5733 broad.mit.edu 36 1 71285368 71285368 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198715 exon1 c.G481A p.A161T . . . CAMTA1 23261 broad.mit.edu 36 1 7646377 7646377 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015215 exon9 c.C1183A p.Q395K . . . CAMTA1 23261 broad.mit.edu 36 1 7721105 7721105 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015215 exon16 c.C4158T p.C1386C . . . CTBS 1486 broad.mit.edu 36 1 84793388 84793388 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004388 exon7 c.G1040A p.R347H . . . COL24A1 255631 broad.mit.edu 36 1 86270183 86270183 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152890 exon14 c.G2015A p.G672D . . . HS2ST1 9653 broad.mit.edu 36 1 87311337 87311337 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134492 exon2 c.G257A p.S86N . . . GBP3 2635 broad.mit.edu 36 1 89258884 89258884 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018284 exon2 c.C109T p.P37S . . . GBP7 388646 broad.mit.edu 36 1 89388688 89388688 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207398 exon6 c.C784T p.Q262X . . . LRRC8D 55144 broad.mit.edu 36 1 90173240 90173240 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134479 exon3 c.A2025G p.E675E . . . ZNF326 284695 broad.mit.edu 36 1 90245611 90245611 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182976 exon5 c.G329A p.R110Q . . . HFM1 164045 broad.mit.edu 36 1 91557474 91557474 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017975 exon24 c.G2644A p.A882T . . . TGFBR3 7049 broad.mit.edu 36 1 91996782 91996782 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195683 exon4 c.C360A p.A120A . . . ABCA4 24 broad.mit.edu 36 1 94321578 94321578 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000350 exon7 c.C776T p.T259I . . . ABCA4 24 broad.mit.edu 36 1 94337110 94337110 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000350 exon6 c.C596T p.A199V . . . ABCD3 5825 broad.mit.edu 36 1 94736810 94736810 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002858 exon17 c.G1451A p.R484H . . . DPYD 1806 broad.mit.edu 36 1 97317218 97317218 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000110 exon23 c.A2980G p.S994G . . . AGRN 375790 broad.mit.edu 36 1 977044 977044 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198576 exon33 c.C5637T p.N1879N . . . LPPR4 9890 broad.mit.edu 36 1 99539067 99539067 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014839 exon5 c.C749T p.S250F . . . SLC25A24 29957 broad.mit.edu 36 1 108501706 108501706 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_013386 exon5 c.570delA p.K190fs . . . SYCP1 6847 broad.mit.edu 36 1 115328944 115328944 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003176 exon30 c.2635delA p.K879fs . . . THEM5 284486 broad.mit.edu 36 1 150090156 150090156 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182578 exon3 c.461delC p.P154fs . . . NTRK1 4914 broad.mit.edu 36 1 155100827 155100827 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001012331 exon2 c.270delG p.L90fs . . . C1orf106 55765 broad.mit.edu 36 1 199127353 199127353 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018265 exon1 c.62delG p.R21fs . . . PSMF1 9491 broad.mit.edu 36 20 1047470 1047470 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006814 exon1 c.G54C p.R18S . . . ISM1 140862 broad.mit.edu 36 20 13217293 13217293 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080826 exon4 c.A750G p.A250A . . . DEFB129 140881 broad.mit.edu 36 20 158033 158033 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080831 exon2 c.A173C p.K58T . . . ZNF133 7692 broad.mit.edu 36 20 18243827 18243827 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003434 exon7 c.T329C p.L110S . . . RALGAPA2 57186 broad.mit.edu 36 20 20501605 20501605 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020343 exon21 c.C2815A p.L939I . . . PYGB 5834 broad.mit.edu 36 20 25210748 25210748 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002862 exon12 c.C1483A p.L495M . . . C20orf160 140706 broad.mit.edu 36 20 30066387 30066387 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080625 exon2 c.G50A p.R17Q . . . DNMT3B 1789 broad.mit.edu 36 20 30831921 30831921 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175848 exon2 c.C131T p.P44L . . . C20orf186 149954 broad.mit.edu 36 20 31146587 31146587 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182519 exon10 c.T1365C p.L455L . . . ZNF341 84905 broad.mit.edu 36 20 31813449 31813449 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032819 exon8 c.C1128A p.T376T . . . TRPC4AP 26133 broad.mit.edu 36 20 33072689 33072689 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199368 exon9 c.C1159A p.L387I . . . DLGAP4 22839 broad.mit.edu 36 20 34493645 34493645 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014902 exon2 c.G111A p.T37T . . . C20orf117 140710 broad.mit.edu 36 20 34877105 34877105 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080627 exon5 c.C2154T p.S718S . . . TBC1D20 128637 broad.mit.edu 36 20 367247 367247 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144628 exon8 c.C1195T p.L399L . . . FAM83D 81610 broad.mit.edu 36 20 37013672 37013672 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030919 exon4 c.C943A p.L315M . . . CDC25B 994 broad.mit.edu 36 20 3726273 3726273 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021873 exon2 c.A205C p.T69P . . . CHD6 84181 broad.mit.edu 36 20 39478769 39478769 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032221 exon33 c.A6359T p.E2120V . . . CHD6 84181 broad.mit.edu 36 20 39502159 39502159 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032221 exon26 c.G3902A p.R1301Q . . . CHD6 84181 broad.mit.edu 36 20 39595174 39595174 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032221 exon3 c.G483A p.S161S . . . TOX2 84969 broad.mit.edu 36 20 42068783 42068783 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032883 exon4 c.A222G p.P74P . . . STK4 6789 broad.mit.edu 36 20 43063249 43063249 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006282 exon9 c.A988G p.M330V . . . SLC2A10 81031 broad.mit.edu 36 20 44787458 44787458 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030777 exon2 c.C376T p.L126L . . . ZMYND8 23613 broad.mit.edu 36 20 45274720 45274720 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183047 exon22 c.C3404A p.P1135Q . . . PREX1 57580 broad.mit.edu 36 20 46692175 46692175 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020820 exon29 c.G3713T p.G1238V . . . ZNFX1 57169 broad.mit.edu 36 20 47314697 47314697 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021035 exon5 c.G2114A p.R705H . . . KCNG1 3755 broad.mit.edu 36 20 49059997 49059997 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002237 exon2 c.A286G p.T96A . . . CDS2 8760 broad.mit.edu 36 20 5118471 5118471 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003818 exon12 c.G1192A p.A398T . . . TSHZ2 128553 broad.mit.edu 36 20 51305767 51305767 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173485 exon2 c.A2363G p.Q788R . . . ZBP1 81030 broad.mit.edu 36 20 55620259 55620259 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160417 exon6 c.C801T p.H267H . . . ZNF831 128611 broad.mit.edu 36 20 57262971 57262971 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178457 exon5 c.C4812A p.P1604P . . . SYCP2 10388 broad.mit.edu 36 20 57900774 57900774 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014258 exon23 c.C2030A p.T677N . . . OSBPL2 9885 broad.mit.edu 36 20 60302317 60302317 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014835 exon14 c.C1386T p.S462S . . . MAVS 57506 broad.mit.edu 36 20 3790041 3790041 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020746 exon4 c.355delC p.P119fs . . . PLCB1 23236 broad.mit.edu 36 20 8693986 8693986 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182734 exon26 c.2911delA p.K971fs . . . ADAMTS5 11096 broad.mit.edu 36 21 27218529 27218529 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007038 exon8 c.C2507T p.A836V . . . SFRS15 57466 broad.mit.edu 36 21 31988434 31988434 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001145444 exon10 c.C1231T p.R411X . . . SYNJ1 8867 broad.mit.edu 36 21 32988491 32988491 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003895 exon6 c.T824C p.V275A . . . DNAJC28 54943 broad.mit.edu 36 21 33782549 33782549 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040192 exon2 c.A1022G p.Y341C . . . ITSN1 6453 broad.mit.edu 36 21 34112536 34112536 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001132 exon23 c.C2823T p.T941T . . . DOPEY2 9980 broad.mit.edu 36 21 36532864 36532864 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005128 exon17 c.T2871C p.F957F . . . RIPK4 54101 broad.mit.edu 36 21 42034860 42034860 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020639 exon8 c.G1562A p.R521Q . . . C21orf70 85395 broad.mit.edu 36 21 45204493 45204493 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058190 exon3 c.C334T p.R112C . . . MCM3AP 8888 broad.mit.edu 36 21 46511449 46511449 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003906 exon10 c.G2664A p.A888A . . . XKR3 150165 broad.mit.edu 36 22 15660748 15660748 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175878 exon3 c.G502T p.V168L . . . BCR 613 broad.mit.edu 36 22 21945933 21945933 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021574 exon8 c.G2087A p.R696Q . . . UPB1 51733 broad.mit.edu 36 22 23221420 23221420 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016327 exon1 c.C49T p.L17L . . . CCDC117 150275 broad.mit.edu 36 22 27499758 27499758 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173510 exon2 c.G231T p.E77D . . . RNF185 91445 broad.mit.edu 36 22 29921540 29921540 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152267 exon4 c.G281T p.R94M . . . LIMK2 3985 broad.mit.edu 36 22 29985964 29985964 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005569 exon5 c.C452T p.T151M . . . APOBEC3F 200316 broad.mit.edu 36 22 37778582 37778582 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145298 exon7 c.C1058A p.P353H . . . TAB1 10454 broad.mit.edu 36 22 38102037 38102037 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145738 exon3 c.C375T p.C125C . . . EP300 2033 broad.mit.edu 36 22 39855877 39855877 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001429 exon5 c.C1206T p.H402H . . . WBP2NL 164684 broad.mit.edu 36 22 40745635 40745635 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152613 exon3 c.C195A p.S65S . . . ARHGAP8 23779 broad.mit.edu 36 22 43583582 43583582 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001017526 exon5 c.T332G p.V111G . . . PRR5-ARHGAP8 553158 broad.mit.edu 36 22 43634296 43634296 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181334 exon14 c.T1265C p.V422A . . . PKDREJ 10343 broad.mit.edu 36 22 45034293 45034293 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006071 exon1 c.C3591T p.Y1197Y . . . TBC1D22A 25771 broad.mit.edu 36 22 45686668 45686668 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014346 exon8 c.G935A p.R312H . . . ZBED4 9889 broad.mit.edu 36 22 48664544 48664544 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014838 exon2 c.C1230T p.D410D . . . TUBGCP6 85378 broad.mit.edu 36 22 49001726 49001726 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020461 exon16 c.C3189T p.V1063V . . . CPT1B 1375 broad.mit.edu 36 22 49355593 49355593 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152246 exon17 c.G2137A p.G713S CPT1B,central_nervous_system,brain,Substitution - coding silent,+2 . . CPT1B 1375 broad.mit.edu 36 22 49362239 49362241 + In_Frame_Del DEL GAA - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 GAA GAA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152246 exon4 c.370_372del p.124_124del . . . OTOF 9381 broad.mit.edu 36 2 26539910 26539911 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_194322 exon23 c.3067_3068insC p.M1023fs . . . UXS1 80146 broad.mit.edu 36 2 106095604 106095604 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025076 exon10 c.G794A p.R265H . . . UXS1 80146 broad.mit.edu 36 2 106108543 106108543 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025076 exon8 c.G587A p.R196H . . . SH3RF3 344558 broad.mit.edu 36 2 109616367 109616367 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099289 exon9 c.G2156A p.R719H . . . ZC3H8 84524 broad.mit.edu 36 2 112708279 112708279 + Silent SNP A C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032494 exon5 c.T510G p.G170G . . . CCDC93 54520 broad.mit.edu 36 2 118422211 118422211 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019044 exon15 c.A1164G p.A388A . . . C1QL2 165257 broad.mit.edu 36 2 119631674 119631674 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182528 exon1 c.C642T p.G214G . . . C1QL2 165257 broad.mit.edu 36 2 119632217 119632217 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182528 exon1 c.C99T p.C33C . . . CNTNAP5 129684 broad.mit.edu 36 2 124499724 124499724 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130773 exon1 c.C27T p.S9S . . . CCDC74A 90557 broad.mit.edu 36 2 132005726 132005726 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138770 exon4 c.C564T p.P188P . . . NCKAP5 344148 broad.mit.edu 36 2 133777115 133777115 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207481 exon4 c.T107C p.L36P . . . RAB3GAP1 22930 broad.mit.edu 36 2 135607931 135607931 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012233 exon15 c.T1357C p.S453P . . . RAB3GAP1 22930 broad.mit.edu 36 2 135638653 135638653 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012233 exon23 c.G2626A p.E876K . . . ZRANB3 84083 broad.mit.edu 36 2 135978388 135978388 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032143 exon2 c.G142A p.A48T . . . LCT 3938 broad.mit.edu 36 2 136281355 136281355 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002299 exon9 c.C3986T p.T1329M . . . HNMT 3176 broad.mit.edu 36 2 138455321 138455321 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024075 exon3 c.C256T p.R86C . . . ZEB2 9839 broad.mit.edu 36 2 144873423 144873423 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171653 exon7 c.C1729T p.R577C . . . ACVR2A 92 broad.mit.edu 36 2 148401216 148401216 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001616 exon11 c.T1445C p.M482T . . . MBD5 55777 broad.mit.edu 36 2 148942981 148942981 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018328 exon9 c.C999T p.P333P . . . NEB 4703 broad.mit.edu 36 2 152290282 152290282 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon6 c.G333T p.Q111H . . . NEB 4703 broad.mit.edu 36 2 152292583 152292583 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon5 c.G162A p.Q54Q . . . GPD2 2820 broad.mit.edu 36 2 157115420 157115420 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083112 exon8 c.C887A p.S296Y . . . BAZ2B 29994 broad.mit.edu 36 2 160003105 160003105 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013450 exon8 c.C1248A p.T416T . . . TANK 10010 broad.mit.edu 36 2 161744456 161744456 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199135 exon2 c.T37C p.Y13H . . . GCG 2641 broad.mit.edu 36 2 162712196 162712196 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002054 exon3 c.G167A p.G56D . . . GRB14 2888 broad.mit.edu 36 2 165073228 165073228 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004490 exon8 c.G1006A p.A336T . . . SCN9A 6335 broad.mit.edu 36 2 166837218 166837218 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002977 exon17 c.C3255T p.S1085S . . . METTL5 29081 broad.mit.edu 36 2 170389270 170389270 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014168 exon1 c.G84T p.Q28H . . . METTL8 79828 broad.mit.edu 36 2 171904277 171904277 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024770 exon4 c.A269G p.D90G . . . CYBRD1 79901 broad.mit.edu 36 2 172118229 172118229 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024843 exon3 c.G530A p.G177E . . . DYNC1I2 1781 broad.mit.edu 36 2 172290469 172290469 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001378 exon8 c.G607T p.A203S . . . DYNC1I2 1781 broad.mit.edu 36 2 172292667 172292667 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001378 exon12 c.C1087T p.R363C . . . ZAK 51776 broad.mit.edu 36 2 173834091 173834091 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016653 exon18 c.G1531T p.E511X . . . AGPS 8540 broad.mit.edu 36 2 178066147 178066147 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003659 exon12 c.T1259G p.L420R . . . PDE11A 50940 broad.mit.edu 36 2 178644807 178644807 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016953 exon1 c.C604T p.R202C . . . TTN 7273 broad.mit.edu 36 2 179104738 179104738 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon186 c.G77654A p.R25885H . . . TTN 7273 broad.mit.edu 36 2 179120565 179120565 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon167 c.T66838C p.X22280Q . . . TTN 7273 broad.mit.edu 36 2 179126984 179126984 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon161 c.A61904G p.K20635R . . . TTN 7273 broad.mit.edu 36 2 179134234 179134234 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.C57675T p.N19225N . . . TTN 7273 broad.mit.edu 36 2 179182324 179182324 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon101 c.C24763G p.Q8255E . . . TTN 7273 broad.mit.edu 36 2 179277874 179277874 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon101 c.T25937C p.I8646T . . . DNAJC10 54431 broad.mit.edu 36 2 183325085 183325085 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018981 exon16 c.A1476G p.R492R . . . NUP35 129401 broad.mit.edu 36 2 183703464 183703464 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138285 exon3 c.T285C p.Y95Y . . . SGOL2 151246 broad.mit.edu 36 2 201146259 201146259 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160046 exon7 c.T2945A p.V982E . . . CASP8 841 broad.mit.edu 36 2 201839639 201839639 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033356 exon2 c.T185C p.L62P . . . INO80D 54891 broad.mit.edu 36 2 206601180 206601180 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017759 exon6 c.C1198T p.H400Y . . . ZDBF2 57683 broad.mit.edu 36 2 206881067 206881067 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020923 exon5 c.G3570A p.K1190K . . . KLF7 8609 broad.mit.edu 36 2 207696817 207696817 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003709 exon2 c.G659A p.R220H . . . APOB 338 broad.mit.edu 36 2 21088179 21088179 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000384 exon26 c.G5066A p.R1689H . . . IKZF2 22807 broad.mit.edu 36 2 213581006 213581006 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016260 exon8 c.A904G p.N302D . . . PNKD 25953 broad.mit.edu 36 2 218844511 218844511 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077399 exon2 c.G231A p.L77L . . . GLB1L 79411 broad.mit.edu 36 2 219816176 219816176 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024506 exon3 c.G177A p.P59P . . . ACCN4 55515 broad.mit.edu 36 2 220104834 220104834 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018674 exon2 c.G1074A p.Q358Q . . . CHPF 79586 broad.mit.edu 36 2 220113433 220113433 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024536 exon4 c.G1244A p.R415H . . . PAX3 5077 broad.mit.edu 36 2 222868500 222868500 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000438 exon3 c.G442A p.V148M . . . COL4A3 1285 broad.mit.edu 36 2 227824305 227824305 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000091 exon11 c.G619T p.G207X . . . SP110 3431 broad.mit.edu 36 2 230743636 230743636 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080424 exon18 c.C1973T p.A658V . . . NMUR1 10316 broad.mit.edu 36 2 232101918 232101918 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006056 exon2 c.G58A p.A20T . . . C2orf44 80304 broad.mit.edu 36 2 24114855 24114855 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025203 exon2 c.C1014T p.G338G . . . MTERFD2 130916 broad.mit.edu 36 2 241685472 241685472 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182501 exon3 c.C564T p.T188T . . . STK25 10494 broad.mit.edu 36 2 242087359 242087359 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006374 exon6 c.G571A p.A191T . . . ASXL2 55252 broad.mit.edu 36 2 25875820 25875820 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018263 exon4 c.G341A p.S114N . . . IFT172 26160 broad.mit.edu 36 2 27526416 27526416 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015662 exon36 c.G4003A p.V1335I . . . IFT172 26160 broad.mit.edu 36 2 27537646 27537646 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015662 exon22 c.C2436T p.Y812Y . . . ALK 238 broad.mit.edu 36 2 29305375 29305375 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004304 exon16 c.G2694T p.E898D . . . SRD5A2 6716 broad.mit.edu 36 2 31612315 31612315 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000348 exon2 c.C306T p.I102I . . . NLRC4 58484 broad.mit.edu 36 2 32329588 32329588 + Silent SNP G A A rs35155278 unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021209 exon4 c.C849T p.C283C . . . NLRC4 58484 broad.mit.edu 36 2 32331128 32331128 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021209 exon3 c.C126T p.C42C . . . HEATR5B 54497 broad.mit.edu 36 2 37149482 37149482 + Silent SNP A T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019024 exon8 c.T1023A p.P341P . . . PRKD3 23683 broad.mit.edu 36 2 37334855 37334855 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005813 exon17 c.T2495C p.L832P . . . SLC8A1 6546 broad.mit.edu 36 2 40195991 40195991 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001112800 exon9 c.C2813T p.A938V . . . SLC3A1 6519 broad.mit.edu 36 2 44362066 44362066 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000341 exon3 c.C647T p.T216M . . . EPAS1 2034 broad.mit.edu 36 2 46461048 46461048 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001430 exon12 c.C1733T p.A578V . . . MSH6 2956 broad.mit.edu 36 2 47887284 47887284 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000179 exon9 c.C3991T p.R1331X . . . FSHR 2492 broad.mit.edu 36 2 49049384 49049384 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181446 exon8 c.T733C p.Y245H . . . PNPT1 87178 broad.mit.edu 36 2 55760344 55760344 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033109 exon8 c.C656G p.A219G . . . XPO1 7514 broad.mit.edu 36 2 61569390 61569390 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003400 exon18 c.T2043C p.D681D . . . FAM161A 84140 broad.mit.edu 36 2 61922761 61922761 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032180 exon2 c.G422T p.R141I . . . VPS54 51542 broad.mit.edu 36 2 64064560 64064560 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016516 exon2 c.G78A p.P26P . . . SERTAD2 9792 broad.mit.edu 36 2 64716898 64716898 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014755 exon2 c.C612T p.G204G . . . PROKR1 10887 broad.mit.edu 36 2 68735950 68735950 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138964 exon2 c.G920A p.R307H . . . GMCL1 64395 broad.mit.edu 36 2 69923802 69923802 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178439 exon5 c.G597A p.Q199Q . . . ADD2 119 broad.mit.edu 36 2 70764403 70764403 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185054 exon10 c.C953T p.S318L . . . ZNF638 27332 broad.mit.edu 36 2 71430351 71430351 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014497 exon2 c.C759A p.P253P . . . ALMS1 7840 broad.mit.edu 36 2 73466576 73466576 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015120 exon1 c.G72A p.E24E . . . ALMS1 7840 broad.mit.edu 36 2 73532346 73532346 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015120 exon8 c.C5181T p.D1727D . . . RTKN 6242 broad.mit.edu 36 2 74507103 74507103 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001015056 exon12 c.G1317A p.Q439Q . . . EIF2AK3 9451 broad.mit.edu 36 2 88655881 88655881 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004836 exon13 c.A2235G p.G745G . . . CPSF3 51692 broad.mit.edu 36 2 9490256 9490256 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016207 exon5 c.C507T p.I169I . . . PROM2 150696 broad.mit.edu 36 2 95316314 95316314 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_144707 exon18 c.C2076A p.S692S . . . RBM45 129831 broad.mit.edu 36 2 178697166 178697166 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152945 exon8 c.1135delA p.K379fs . . . STK17B 9262 broad.mit.edu 36 2 196729546 196729546 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004226 exon3 c.197delA p.K66fs . . . CASP8 841 broad.mit.edu 36 2 201859535 201859535 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033356 exon8 c.1368delA p.R456fs . . . NRP2 8828 broad.mit.edu 36 2 206336710 206336710 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_201266 exon13 c.2112delC p.S704fs . . . GPR113 165082 broad.mit.edu 36 2 26387917 26387917 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001145169 exon10 c.1976delG p.G659fs . . . DCBLD2 131566 broad.mit.edu 36 3 100003166 100003166 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_080927 exon14 c.G1688A p.G563D . . . FILIP1L 11259 broad.mit.edu 36 3 101131410 101131410 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182909 exon3 c.T406C p.Y136H . . . IRAK2 3656 broad.mit.edu 36 3 10181688 10181688 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001570 exon1 c.G50A p.C17Y . . . IMPG2 50939 broad.mit.edu 36 3 102446191 102446191 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016247 exon13 c.A1674G p.S558S . . . SENP7 57337 broad.mit.edu 36 3 102527486 102527486 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020654 exon24 c.C3144T p.S1048S . . . FAM55C 91775 broad.mit.edu 36 3 103002866 103002866 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134456 exon5 c.G191A p.G64D . . . ATP2B2 491 broad.mit.edu 36 3 10345508 10345508 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001683 exon20 c.C3587T p.T1196M . . . ATP2B2 491 broad.mit.edu 36 3 10375396 10375396 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001683 exon11 c.C1980T p.I660I . . . CBLB 868 broad.mit.edu 36 3 106935548 106935548 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170662 exon9 c.T1198C p.W400R . . . SLC6A11 6538 broad.mit.edu 36 3 10860939 10860939 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014229 exon5 c.G664A p.G222R . . . MYH15 22989 broad.mit.edu 36 3 109666346 109666346 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014981 exon16 c.G1620A p.M540I . . . SLC6A1 6529 broad.mit.edu 36 3 11043007 11043007 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003042 exon10 c.A1040G p.H347R . . . SLC9A10 285335 broad.mit.edu 36 3 113403832 113403832 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183061 exon18 c.A2277G p.I759M . . . CD200R1 131450 broad.mit.edu 36 3 114130732 114130732 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138939 exon4 c.T515C p.V172A . . . SPICE1 152185 broad.mit.edu 36 3 114651971 114651971 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144718 exon15 c.G2225A p.R742H . . . KIAA1407 57577 broad.mit.edu 36 3 115203158 115203158 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020817 exon13 c.C2137T p.R713X . . . POLQ 10721 broad.mit.edu 36 3 122731269 122731269 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199420 exon7 c.T1021C p.L341L . . . FBXO40 51725 broad.mit.edu 36 3 122823544 122823544 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016298 exon3 c.C578T p.A193V . . . FBXO40 51725 broad.mit.edu 36 3 122824269 122824269 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016298 exon3 c.C1303T p.P435S . . . GOLGB1 2804 broad.mit.edu 36 3 122898108 122898108 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004487 exon13 c.G3937A p.E1313K . . . SEMA5B 54437 broad.mit.edu 36 3 124113519 124113519 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031702 exon20 c.G2984T p.G995V . . . MYLK 4638 broad.mit.edu 36 3 124901842 124901842 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053025 exon18 c.C3163T p.P1055S . . . KALRN 8997 broad.mit.edu 36 3 125586521 125586521 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003947 exon11 c.A1904C p.Q635P . . . HEG1 57493 broad.mit.edu 36 3 126215071 126215071 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020733 exon6 c.T2042C p.V681A . . . NPHP3 27031 broad.mit.edu 36 3 133886211 133886211 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153240 exon24 c.A3447G p.K1149K . . . NUP210 23225 broad.mit.edu 36 3 13396214 13396214 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024923 exon7 c.C825T p.S275S . . . PCCB 5096 broad.mit.edu 36 3 137502596 137502596 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178014 exon10 c.C979A p.P327T . . . ARMC8 25852 broad.mit.edu 36 3 139446670 139446670 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213654 exon13 c.G1047A p.K349K . . . SLC25A36 55186 broad.mit.edu 36 3 142175517 142175517 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001104647 exon6 c.C722T p.T241I . . . FGD5 152273 broad.mit.edu 36 3 14837305 14837305 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152536 exon1 c.A1723G p.R575G . . . NR2C2 7182 broad.mit.edu 36 3 15059488 15059488 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003298 exon15 c.A1817G p.Y606C . . . COMMD2 51122 broad.mit.edu 36 3 150942081 150942081 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016094 exon5 c.C517T p.L173F . . . EIF2A 83939 broad.mit.edu 36 3 151768678 151768678 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032025 exon9 c.C720T p.S240S . . . SIAH2 6478 broad.mit.edu 36 3 151942751 151942751 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005067 exon2 c.G842A p.R281H . . . SIAH2 6478 broad.mit.edu 36 3 151942848 151942848 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005067 exon2 c.G745A p.V249I . . . MME 4311 broad.mit.edu 36 3 156342779 156342779 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000902 exon12 c.G1154A p.R385Q . . . PLCH1 23007 broad.mit.edu 36 3 156681716 156681716 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130960 exon23 c.A4817C p.N1606T . . . PLCH1 23007 broad.mit.edu 36 3 156715220 156715220 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130960 exon11 c.G1582A p.A528T . . . GMPS 8833 broad.mit.edu 36 3 157138152 157138152 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003875 exon16 c.C2059A p.P687T . . . SI 6476 broad.mit.edu 36 3 166265874 166265874 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001041 exon7 c.T676C p.Y226H . . . SLITRK3 22865 broad.mit.edu 36 3 166388737 166388737 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014926 exon2 c.G2576T p.G859V . . . GOLIM4 27333 broad.mit.edu 36 3 169233291 169233291 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014498 exon9 c.C887A p.P296H . . . DNAJC19 131118 broad.mit.edu 36 3 182188515 182188515 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145261 exon3 c.T119C p.L40P . . . YEATS2 55689 broad.mit.edu 36 3 184986737 184986737 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018023 exon20 c.C2867T p.A956V . . . DVL3 1857 broad.mit.edu 36 3 185365410 185365410 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004423 exon5 c.G596A p.S199N . . . ETV5 2119 broad.mit.edu 36 3 187249236 187249236 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004454 exon13 c.C1419T p.C473C . . . HRG 3273 broad.mit.edu 36 3 187866561 187866561 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000412 exon1 c.C47T p.S16L . . . RTP2 344892 broad.mit.edu 36 3 188899352 188899352 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004312 exon2 c.G306A p.A102A . . . TP63 8626 broad.mit.edu 36 3 191064887 191064887 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114980 exon3 c.G470A p.R157H . . . LEPREL1 55214 broad.mit.edu 36 3 191172417 191172417 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134418 exon12 c.C1230G p.N410K . . . CLDN16 10686 broad.mit.edu 36 3 191610485 191610485 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006580 exon5 c.C884T p.T295M . . . OSTN 344901 broad.mit.edu 36 3 192450546 192450546 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198184 exon3 c.G344A p.R115Q . . . CPN2 1370 broad.mit.edu 36 3 195543948 195543948 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080513 exon2 c.C1179T p.H393H . . . MUC4 4585 broad.mit.edu 36 3 197000224 197000224 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018406 exon2 c.C2622A p.P874P . . . LRRC33 375387 broad.mit.edu 36 3 197871986 197871986 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198565 exon3 c.C1075A p.L359I . . . UBE2E1 7324 broad.mit.edu 36 3 23823833 23823833 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182666 exon2 c.G69T p.E23D . . . TOP2B 7155 broad.mit.edu 36 3 25641195 25641195 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001068 exon19 c.G2313A p.S771S . . . OXSM 54995 broad.mit.edu 36 3 25808482 25808482 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017897 exon2 c.G967T p.G323C . . . TRNT1 51095 broad.mit.edu 36 3 3164646 3164646 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182916 exon8 c.G1113A p.E371E . . . CLASP2 23122 broad.mit.edu 36 3 33661267 33661267 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015097 exon8 c.G848A p.G283D . . . PDCD6IP 10015 broad.mit.edu 36 3 33882955 33882955 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162429 exon18 c.G2556A p.P852P . . . CTDSPL 10217 broad.mit.edu 36 3 37997275 37997275 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005808 exon7 c.G711A p.T237T . . . ACAA1 30 broad.mit.edu 36 3 38148098 38148098 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130410 exon5 c.G439A p.A147T . . . MYD88 4615 broad.mit.edu 36 3 38157004 38157004 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172568 exon2 c.C489G p.D163E . . . SLC22A13 9390 broad.mit.edu 36 3 38293894 38293894 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004256 exon10 c.G1590T p.K530N . . . SLC22A14 9389 broad.mit.edu 36 3 38329513 38329513 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004803 exon5 c.C964T p.R322W . . . GORASP1 64689 broad.mit.edu 36 3 39119338 39119338 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031899 exon3 c.C183A p.A61A . . . CHL1 10752 broad.mit.edu 36 3 422269 422269 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006614 exon28 c.G3550A p.G1184R . . . CCBP2 1238 broad.mit.edu 36 3 42881876 42881876 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001296 exon3 c.C878T p.A293V . . . SNRK 54861 broad.mit.edu 36 3 43348701 43348701 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017719 exon4 c.T626C p.V209A . . . SNRK 54861 broad.mit.edu 36 3 43364960 43364960 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017719 exon7 c.G2205A p.L735L . . . ZNF445 353274 broad.mit.edu 36 3 44465145 44465145 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181489 exon8 c.C1022T p.P341L . . . SETD2 29072 broad.mit.edu 36 3 47137769 47137769 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014159 exon3 c.G3361A p.A1121T . . . FBXW12 285231 broad.mit.edu 36 3 48411079 48411079 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207102 exon11 c.G1346T p.R449M . . . NCKIPSD 51517 broad.mit.edu 36 3 48694958 48694958 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016453 exon3 c.T313C p.S105P . . . QRICH1 54870 broad.mit.edu 36 3 49089156 49089156 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198880 exon2 c.A299C p.Q100P . . . QARS 5859 broad.mit.edu 36 3 49112274 49112274 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005051 exon15 c.T1312C p.Y438H . . . TCTA 6988 broad.mit.edu 36 3 49425018 49425018 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022171 exon1 c.G155A p.G52D . . . DNAH1 25981 broad.mit.edu 36 3 52353627 52353627 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015512 exon9 c.C1368T p.H456H . . . DNAH1 25981 broad.mit.edu 36 3 52362514 52362514 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015512 exon20 c.G3305A p.R1102H . . . ITIH3 3699 broad.mit.edu 36 3 52811839 52811839 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002217 exon13 c.C1686A p.T562T . . . PRKCD 5580 broad.mit.edu 36 3 53198135 53198135 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006254 exon17 c.A1576G p.T526A . . . ERC2 26059 broad.mit.edu 36 3 55897517 55897517 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015576 exon13 c.C2498T p.A833V . . . FAM107A 11170 broad.mit.edu 36 3 58530602 58530602 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001076778 exon2 c.G26A p.R9Q . . . MAGI1 9223 broad.mit.edu 36 3 65324273 65324273 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015520 exon22 c.C3486T p.G1162G . . . SHQ1 55164 broad.mit.edu 36 3 72949196 72949196 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018130 exon7 c.C757T p.L253L . . . CNTN3 5067 broad.mit.edu 36 3 74556744 74556744 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020872 exon4 c.G396A p.V132V . . . ROBO1 6091 broad.mit.edu 36 3 78763103 78763103 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002941 exon25 c.C3524T p.P1175L . . . GBE1 2632 broad.mit.edu 36 3 81722908 81722908 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000158 exon9 c.G1206A p.T402T . . . C3orf38 285237 broad.mit.edu 36 3 88287901 88287901 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173824 exon3 c.G416A p.R139H . . . SETD5 55209 broad.mit.edu 36 3 9481330 9481330 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080517 exon18 c.C2698T p.R900C . . . C3orf77 375337 broad.mit.edu 36 3 44260015 44260015 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001145030 exon2 c.1013delA p.E338fs . . . P4HTM 54681 broad.mit.edu 36 3 49018197 49018197 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_177938 exon7 c.1240delC p.P414fs . . . KIAA1530 57654 broad.mit.edu 36 4 1333585 1333586 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020894 exon3 c.372_373insG p.F124fs . . . AGXT2L1 64850 broad.mit.edu 36 4 109883131 109883131 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146627 exon12 c.C1284T p.C428C . . . AGXT2L1 64850 broad.mit.edu 36 4 109888615 109888615 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146627 exon8 c.T903A p.D301E . . . COL25A1 84570 broad.mit.edu 36 4 110442426 110442426 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198721 exon2 c.G199A p.E67K . . . PRSS12 8492 broad.mit.edu 36 4 119472337 119472337 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003619 exon4 c.G953A p.C318Y . . . SYNPO2 171024 broad.mit.edu 36 4 120198158 120198158 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133477 exon5 c.C3407T p.A1136V . . . PRDM5 11107 broad.mit.edu 36 4 121895238 121895238 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018699 exon14 c.C1543T p.R515C . . . BBS7 55212 broad.mit.edu 36 4 122969225 122969225 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176824 exon16 c.C1785T p.Y595Y . . . KIAA1109 84162 broad.mit.edu 36 4 123347769 123347769 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015312 exon14 c.C1553T p.P518L . . . ANKRD50 57182 broad.mit.edu 36 4 125812873 125812873 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167882 exon3 c.C472T p.L158L . . . FAT4 79633 broad.mit.edu 36 4 126547593 126547593 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon3 c.C5416T p.R1806C . . . PCDH10 57575 broad.mit.edu 36 4 134291977 134291977 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032961 exon1 c.A1232G p.N411S . . . PCDH10 57575 broad.mit.edu 36 4 134292387 134292387 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032961 exon1 c.G1642A p.A548T . . . CLGN 1047 broad.mit.edu 36 4 141536757 141536757 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004362 exon9 c.G937T p.G313C . . . TBC1D9 23158 broad.mit.edu 36 4 141810302 141810302 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015130 exon8 c.C1373T p.T458I . . . USP38 84640 broad.mit.edu 36 4 144353026 144353026 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032557 exon8 c.A1603G p.R535G . . . USP38 84640 broad.mit.edu 36 4 144355434 144355434 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032557 exon9 c.C2855T p.T952I . . . KIAA0922 23240 broad.mit.edu 36 4 154777071 154777071 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015196 exon35 c.T4723C p.F1575L . . . TLR2 7097 broad.mit.edu 36 4 154845248 154845248 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003264 exon3 c.T1739C p.L580P . . . DCHS2 54798 broad.mit.edu 36 4 155475603 155475603 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142552 exon4 c.C2580T p.A860A . . . NPY2R 4887 broad.mit.edu 36 4 156355499 156355499 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000910 exon2 c.G958A p.A320T . . . GUCY1B3 2983 broad.mit.edu 36 4 156930347 156930347 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000857 exon5 c.C329T p.T110I . . . PDGFC 56034 broad.mit.edu 36 4 157951459 157951459 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016205 exon3 c.C475A p.H159N . . . FAT1 2195 broad.mit.edu 36 4 187777135 187777135 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005245 exon10 c.T7599C p.N2533N . . . FAT1 2195 broad.mit.edu 36 4 187865609 187865609 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005245 exon2 c.C2367A p.T789T . . . ZFP42 132625 broad.mit.edu 36 4 189161755 189161755 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174900 exon4 c.G800A p.R267H . . . PPARGC1A 10891 broad.mit.edu 36 4 23439133 23439133 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013261 exon5 c.C745T p.Q249X . . . SLC34A2 10568 broad.mit.edu 36 4 25287439 25287439 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177999 exon13 c.G2040A p.S680S . . . ZNF721 170960 broad.mit.edu 36 4 426934 426934 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133474 exon3 c.G1322T p.G441V . . . GUF1 60558 broad.mit.edu 36 4 44392427 44392427 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021927 exon15 c.G1754A p.R585Q . . . GNPDA2 132789 broad.mit.edu 36 4 44407739 44407739 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138335 exon5 c.G582T p.M194I . . . CORIN 10699 broad.mit.edu 36 4 47376997 47376997 + Silent SNP G A A rs13306285 unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006587 exon8 c.C1050T p.C350C . . . CWH43 80157 broad.mit.edu 36 4 48729407 48729407 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025087 exon12 c.G1576A p.E526K . . . PIGG 54872 broad.mit.edu 36 4 517699 517699 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017733 exon12 c.G2640A p.A880A . . . STK32B 55351 broad.mit.edu 36 4 5383929 5383929 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018401 exon4 c.G342A p.Q114Q . . . SCFD2 152579 broad.mit.edu 36 4 53913538 53913538 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152540 exon2 c.T991C p.C331R . . . LNX1 84708 broad.mit.edu 36 4 54039534 54039534 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126328 exon8 c.G1618A p.V540I . . . EVC2 132884 broad.mit.edu 36 4 5637380 5637380 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166136 exon17 c.C2688A p.S896S . . . EPHA5 2044 broad.mit.edu 36 4 65899723 65899723 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004439 exon14 c.C2487A p.P829P . . . KIAA0232 9778 broad.mit.edu 36 4 6916392 6916392 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014743 exon7 c.T3382C p.S1128P . . . TADA2B 93624 broad.mit.edu 36 4 7106837 7106837 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152293 exon2 c.G418A p.G140R . . . ENAM 10117 broad.mit.edu 36 4 71728483 71728483 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031889 exon9 c.G2476T p.G826C . . . USO1 8615 broad.mit.edu 36 4 76945354 76945354 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003715 exon17 c.G2012T p.G671V . . . AFAP1 60312 broad.mit.edu 36 4 7846422 7846422 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134647 exon11 c.T1298C p.I433T . . . BMP2K 55589 broad.mit.edu 36 4 80051051 80051051 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198892 exon16 c.G2326A p.D776N . . . SCD5 79966 broad.mit.edu 36 4 83776828 83776828 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037582 exon4 c.C742T p.R248W . . . SEC31A 22872 broad.mit.edu 36 4 83997129 83997129 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077206 exon16 c.G1881A p.R627R . . . ACOX3 8310 broad.mit.edu 36 4 8462945 8462945 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003501 exon6 c.A581G p.K194R . . . WDFY3 23001 broad.mit.edu 36 4 85927701 85927701 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014991 exon23 c.G3859T p.G1287X . . . FAM13A 10144 broad.mit.edu 36 4 89890781 89890781 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014883 exon15 c.G1757A p.R586Q . . . GPRIN3 285513 broad.mit.edu 36 4 90388000 90388000 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198281 exon2 c.G2285A p.R762H . . . DRD5 1816 broad.mit.edu 36 4 9393134 9393134 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000798 exon1 c.T383C p.I128T . . . CAMK4 814 broad.mit.edu 36 5 110588101 110588101 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001744 exon1 c.C21A p.P7P . . . APC 324 broad.mit.edu 36 5 112144450 112144450 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127511 exon5 c.C626T p.A209V . . . APC 324 broad.mit.edu 36 5 112202951 112202951 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127511 exon14 c.T3707A p.I1236N APC,large_intestine,rectum,Substitution - Missense,+1 . . TRIM36 55521 broad.mit.edu 36 5 114527156 114527156 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018700 exon2 c.C256A p.P86T . . . CCDC112 153733 broad.mit.edu 36 5 114634923 114634923 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040440 exon7 c.G1218A p.Q406Q . . . SEMA6A 57556 broad.mit.edu 36 5 115841444 115841444 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020796 exon15 c.G1646A p.S549N . . . FAM170A 340069 broad.mit.edu 36 5 118997951 118997951 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182761 exon3 c.G609A p.L203L . . . CEP120 153241 broad.mit.edu 36 5 122753625 122753625 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166226 exon8 c.G1069A p.V357M . . . PRRC1 133619 broad.mit.edu 36 5 126915437 126915437 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130809 exon9 c.A1268C p.Q423P . . . SLC12A2 6558 broad.mit.edu 36 5 127521682 127521682 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001046 exon16 c.G2402A p.R801H . . . C5orf56 441108 broad.mit.edu 36 5 131824357 131824357 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013717 exon4 c.T293C p.L98P . . . DNAH5 1767 broad.mit.edu 36 5 13936128 13936128 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon20 c.A3059T p.N1020I . . . PCDHA13 56136 broad.mit.edu 36 5 140243878 140243878 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031865 exon1 c.C1841T p.A614V . . . PCDHB8 56128 broad.mit.edu 36 5 140539390 140539390 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019120 exon1 c.C1591T p.R531W . . . PCDHB15 56121 broad.mit.edu 36 5 140606672 140606672 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018935 exon1 c.G1342A p.A448T . . . PCDHGA4 56111 broad.mit.edu 36 5 140716444 140716444 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018917 exon1 c.G1493A p.G498D . . . PCDHGA6 56109 broad.mit.edu 36 5 140735090 140735090 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032086 exon1 c.A1256T p.N419I . . . PCDHGC4 56098 broad.mit.edu 36 5 140845319 140845319 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032406 exon1 c.G395A p.R132H . . . TRIO 7204 broad.mit.edu 36 5 14416841 14416841 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007118 exon14 c.A2392G p.I798V . . . ABLIM3 22885 broad.mit.edu 36 5 148593056 148593056 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014945 exon10 c.C888T p.C296C . . . SLC26A2 1836 broad.mit.edu 36 5 149340344 149340344 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000112 exon3 c.C995T p.P332L . . . TNIP1 10318 broad.mit.edu 36 5 150420091 150420091 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006058 exon5 c.G416A p.S139N . . . ODZ2 57451 broad.mit.edu 36 5 167421697 167421697 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122679 exon7 c.G1364A p.R455Q . . . DDX41 51428 broad.mit.edu 36 5 176875971 176875971 + De_novo_Start_OutOfFrame SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016222 exon3 c.G222T p.E74D . . . BTNL8 79908 broad.mit.edu 36 5 180268204 180268204 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024850 exon2 c.T62G p.V21G . . . CDH18 1016 broad.mit.edu 36 5 19519262 19519262 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004934 exon12 c.G1787A p.R596H . . . CDH10 1008 broad.mit.edu 36 5 24524012 24524012 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006727 exon12 c.A1884G p.V628V . . . CDH10 1008 broad.mit.edu 36 5 24573261 24573261 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006727 exon3 c.G511A p.E171K . . . PDZD2 23037 broad.mit.edu 36 5 32109861 32109861 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178140 exon17 c.C2892T p.C964C . . . ZFR 51663 broad.mit.edu 36 5 32415973 32415973 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016107 exon16 c.G2704A p.A902T . . . ADAMTS12 81792 broad.mit.edu 36 5 33624632 33624632 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030955 exon18 c.C2694T p.C898C . . . ADAMTS12 81792 broad.mit.edu 36 5 33660167 33660167 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030955 exon14 c.G2069A p.R690H . . . UGT3A1 133688 broad.mit.edu 36 5 35991661 35991661 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152404 exon6 c.C1138T p.R380C . . . NIPBL 25836 broad.mit.edu 36 5 37036932 37036932 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015384 exon14 c.C3659T p.A1220V . . . C5orf42 65250 broad.mit.edu 36 5 37189747 37189747 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023073 exon41 c.C8063A p.P2688H . . . C9 735 broad.mit.edu 36 5 39377135 39377135 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001737 exon4 c.C346T p.R116X . . . GHR 2690 broad.mit.edu 36 5 42754959 42754959 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000163 exon10 c.C1593G p.D531E . . . MGC42105 167359 broad.mit.edu 36 5 43313010 43313010 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153361 exon3 c.C387A p.H129Q . . . ACTBL2 345651 broad.mit.edu 36 5 56813606 56813606 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017992 exon1 c.T686C p.V229A . . . MAST4 375449 broad.mit.edu 36 5 66496096 66496096 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015183 exon28 c.A4766C p.E1589A . . . CDK7 1022 broad.mit.edu 36 5 68567003 68567003 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001799 exon2 c.T93C p.D31D . . . ADCY2 108 broad.mit.edu 36 5 7743813 7743813 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_020546 exon5 c.C730T p.L244L . . . BHMT2 23743 broad.mit.edu 36 5 78414808 78414808 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178005 exon5 c.C444T p.P148P . . . CMYA5 202333 broad.mit.edu 36 5 79063980 79063980 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153610 exon2 c.T3636C p.D1212D . . . HAPLN1 1404 broad.mit.edu 36 5 82976208 82976208 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001884 exon4 c.C505T p.R169C . . . EDIL3 10085 broad.mit.edu 36 5 83511971 83511971 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005711 exon4 c.G351A p.Q117Q . . . TRIP13 9319 broad.mit.edu 36 5 967598 967598 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004237 exon11 c.C1039T p.R347C . . . PRDM13 59336 broad.mit.edu 36 6 100163341 100163341 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021620 exon2 c.C148T p.R50C . . . SIM1 6492 broad.mit.edu 36 6 100945512 100945512 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005068 exon11 c.C1747A p.Q583K . . . PREP 5550 broad.mit.edu 36 6 105832939 105832939 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002726 exon15 c.C1906A p.L636I . . . PREP 5550 broad.mit.edu 36 6 105836417 105836417 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002726 exon14 c.G1735A p.G579R . . . RTN4IP1 84816 broad.mit.edu 36 6 107146792 107146792 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032730 exon6 c.C746T p.A249V . . . RSPH4A 345895 broad.mit.edu 36 6 117058330 117058330 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161664 exon4 c.C1702T p.Q568X . . . GPRC6A 222545 broad.mit.edu 36 6 117223600 117223600 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148963 exon5 c.A1640G p.N547S . . . FAM184A 79632 broad.mit.edu 36 6 119343089 119343089 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024581 exon10 c.G2214T p.E738D . . . FAM184A 79632 broad.mit.edu 36 6 119387328 119387328 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024581 exon2 c.G509A p.R170Q . . . C6orf170 221322 broad.mit.edu 36 6 121684639 121684639 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152730 exon2 c.C156A p.N52K . . . TAAR5 9038 broad.mit.edu 36 6 132952197 132952197 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003967 exon1 c.C322T p.R108C . . . TAAR2 9287 broad.mit.edu 36 6 132980527 132980527 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033080 exon2 c.C511T p.P171S . . . VTA1 51534 broad.mit.edu 36 6 142581363 142581363 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016485 exon8 c.G814T p.A272S . . . GPR126 57211 broad.mit.edu 36 6 142778764 142778764 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001032394 exon19 c.G2724A p.L908L . . . HIVEP2 3097 broad.mit.edu 36 6 143123415 143123415 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006734 exon9 c.G5703T p.E1901D . . . UTRN 7402 broad.mit.edu 36 6 144803187 144803187 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007124 exon12 c.C1399T p.Q467X . . . UST 10090 broad.mit.edu 36 6 149384244 149384244 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005715 exon7 c.C871T p.L291L . . . PCMT1 5110 broad.mit.edu 36 6 150135990 150135990 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005389 exon3 c.C358A p.P120T . . . PPP1R14C 81706 broad.mit.edu 36 6 150577603 150577603 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030949 exon2 c.A337G p.I113V . . . SYNE1 23345 broad.mit.edu 36 6 152485331 152485331 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015293 exon61 c.T9899C p.L3300P . . . RBM16 22828 broad.mit.edu 36 6 155150726 155150726 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014892 exon4 c.G199T p.D67Y . . . RBM16 22828 broad.mit.edu 36 6 155195184 155195184 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014892 exon20 c.C2779T p.R927C . . . ARID1B 57492 broad.mit.edu 36 6 157192230 157192230 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017519 exon2 c.C1720T p.Q574X . . . PARK2 5071 broad.mit.edu 36 6 162784373 162784373 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004562 exon2 c.A130C p.I44L . . . QKI 9444 broad.mit.edu 36 6 163796327 163796327 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206855 exon2 c.T169C p.Y57H . . . QKI 9444 broad.mit.edu 36 6 163819868 163819868 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206855 exon3 c.G352A p.G118R . . . UNC93A 54346 broad.mit.edu 36 6 167641290 167641290 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143947 exon6 c.T884C p.L295P . . . MLLT4 4301 broad.mit.edu 36 6 168087004 168087004 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040000 exon24 c.G3218T p.R1073M . . . TBP 6908 broad.mit.edu 36 6 170720669 170720669 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172085 exon5 c.T662C p.V221A . . . CAP2 10486 broad.mit.edu 36 6 17664603 17664603 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006366 exon13 c.C1385T p.A462V . . . NHLRC1 378884 broad.mit.edu 36 6 18229973 18229973 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198586 exon1 c.C844T p.P282S . . . MBOAT1 154141 broad.mit.edu 36 6 20221189 20221189 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080480 exon11 c.C1106A p.P369H . . . GPLD1 2822 broad.mit.edu 36 6 24558053 24558053 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001503 exon15 c.C1389T p.G463G . . . SLC17A3 10786 broad.mit.edu 36 6 25976554 25976554 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098486 exon2 c.G41T p.S14I . . . HIST1H1A 3024 broad.mit.edu 36 6 26125326 26125326 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005325 exon1 c.C614T p.A205V . . . HIST1H2AE 3012 broad.mit.edu 36 6 26325246 26325246 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021052 exon1 c.C65T p.A22V . . . BTN3A3 10384 broad.mit.edu 36 6 26560394 26560394 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006994 exon11 c.A1531G p.I511V . . . BTN1A1 696 broad.mit.edu 36 6 26609515 26609515 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001732 exon1 c.G22A p.G8S . . . PGBD1 84547 broad.mit.edu 36 6 28359877 28359877 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184743 exon2 c.G308A p.C103Y . . . DHX16 8449 broad.mit.edu 36 6 30740896 30740896 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003587 exon6 c.G1056A p.K352K . . . MDC1 9656 broad.mit.edu 36 6 30789023 30789023 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014641 exon5 c.T675C p.G225G . . . GTF2H4 2968 broad.mit.edu 36 6 30985232 30985232 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001517 exon3 c.T179C p.L60P . . . BAT2 7916 broad.mit.edu 36 6 31711015 31711015 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004638 exon22 c.G5288A p.G1763D . . . CSNK2B 1460 broad.mit.edu 36 6 31745642 31745642 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001320 exon7 c.C608T p.A203V . . . MSH5 4439 broad.mit.edu 36 6 31836537 31836537 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025259 exon20 c.T1955C p.I652T . . . BTNL2 56244 broad.mit.edu 36 6 32478729 32478729 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019602 exon3 c.G670A p.V224I . . . TAP2 6891 broad.mit.edu 36 6 32908541 32908541 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018833 exon6 c.G984A p.A328A . . . COL11A2 1302 broad.mit.edu 36 6 33247488 33247488 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080681 exon40 c.G2872A p.A958T . . . COL11A2 1302 broad.mit.edu 36 6 33250309 33250309 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080681 exon29 c.T2145C p.P715P . . . PNPLA1 285848 broad.mit.edu 36 6 36370021 36370021 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145717 exon4 c.G581A p.S194N . . . USP49 25862 broad.mit.edu 36 6 41881941 41881941 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018561 exon4 c.G759A p.T253T . . . CUL7 9820 broad.mit.edu 36 6 43122054 43122054 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014780 exon12 c.C2558A p.A853D . . . SLC29A1 2030 broad.mit.edu 36 6 44305501 44305501 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001078174 exon4 c.T309C p.H103H . . . AARS2 57505 broad.mit.edu 36 6 44380837 44380837 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020745 exon11 c.G1511A p.R504H . . . RUNX2 860 broad.mit.edu 36 6 45622799 45622799 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004348 exon7 c.A1303G p.T435A . . . PKHD1 5314 broad.mit.edu 36 6 52049066 52049066 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170724 exon6 c.G415A p.V139I . . . KHDRBS2 202559 broad.mit.edu 36 6 62465072 62465072 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152688 exon8 c.C939A p.A313A . . . PHF3 23469 broad.mit.edu 36 6 64481538 64481538 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015153 exon15 c.C6095T p.T2032I . . . FAM135A 57579 broad.mit.edu 36 6 71291797 71291797 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162529 exon13 c.C2289A p.A763A . . . MTO1 25821 broad.mit.edu 36 6 74239998 74239998 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001123226 exon4 c.G725A p.R242Q . . . ELOVL4 6785 broad.mit.edu 36 6 80685938 80685938 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022726 exon5 c.A587G p.Y196C . . . AKIRIN2 55122 broad.mit.edu 36 6 88442329 88442329 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018064 exon4 c.T569C p.I190T . . . MAP3K7 6885 broad.mit.edu 36 6 91338151 91338151 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145333 exon2 c.G217T p.A73S . . . EPHA7 2045 broad.mit.edu 36 6 94177504 94177504 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004440 exon3 c.A268G p.I90V . . . KIAA0776 23376 broad.mit.edu 36 6 97090904 97090904 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015323 exon8 c.A719G p.D240G . . . GPR63 81491 broad.mit.edu 36 6 97353286 97353286 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143957 exon3 c.A1043T p.N348I . . . C6orf167 253714 broad.mit.edu 36 6 97719866 97719866 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198468 exon21 c.G3198C p.K1066N . . . AGPAT4 56895 broad.mit.edu 36 6 161480579 161480579 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020133 exon8 c.907delC p.R303fs . . . C6orf222 389384 broad.mit.edu 36 6 36402484 36402484 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001010903 exon5 c.817delG p.V273fs . . . SLC12A9 56996 broad.mit.edu 36 7 100291331 100291331 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020246 exon4 c.C384T p.N128N . . . PLOD3 8985 broad.mit.edu 36 7 100636291 100636291 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001084 exon19 c.C2208T p.V736V . . . CLDN15 24146 broad.mit.edu 36 7 100667572 100667572 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014343 exon1 c.C11T p.A4V . . . CUX1 1523 broad.mit.edu 36 7 101246081 101246081 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181500 exon1 c.A51G p.L17L . . . CUX1 1523 broad.mit.edu 36 7 101545256 101545256 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181552 exon8 c.T657C p.D219D . . . LAMB4 22798 broad.mit.edu 36 7 107519386 107519386 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007356 exon14 c.C1622T p.P541L . . . PNPLA8 50640 broad.mit.edu 36 7 107906935 107906935 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015723 exon11 c.G2003T p.R668I . . . MET 4233 broad.mit.edu 36 7 116126947 116126947 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000245 exon2 c.G573A p.R191R . . . CFTR 1080 broad.mit.edu 36 7 117094302 117094302 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000492 exon27 c.C4347A p.L1449L . . . CALU 813 broad.mit.edu 36 7 128181734 128181734 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001219 exon3 c.G404A p.G135D . . . IRF5 3663 broad.mit.edu 36 7 128369465 128369465 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098627 exon2 c.G94T p.G32W . . . MKLN1 4289 broad.mit.edu 36 7 130801575 130801575 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_013255 exon15 c.G1789A p.V597I . . . CHRM2 1129 broad.mit.edu 36 7 136351170 136351170 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000739 exon4 c.A1018C p.T340P . . . DGKI 9162 broad.mit.edu 36 7 136913565 136913565 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004717 exon16 c.C1689A p.F563L . . . CREB3L2 64764 broad.mit.edu 36 7 137251199 137251199 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194071 exon3 c.C419T p.P140L . . . KIAA1549 57670 broad.mit.edu 36 7 138173211 138173211 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164665 exon20 c.G5833A p.V1945M . . . HIPK2 28996 broad.mit.edu 36 7 138908405 138908405 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022740 exon15 c.C3405A p.A1135A . . . DENND2A 27147 broad.mit.edu 36 7 139868271 139868271 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015689 exon16 c.G2764A p.E922K . . . SSBP1 6742 broad.mit.edu 36 7 141090194 141090194 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003143 exon5 c.T250C p.W84R . . . MGAM 8972 broad.mit.edu 36 7 141446000 141446000 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004668 exon44 c.A5180C p.H1727P . . . MGAM 8972 broad.mit.edu 36 7 141452118 141452118 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004668 exon48 c.C5532T p.S1844S . . . PIP 5304 broad.mit.edu 36 7 142542464 142542464 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002652 exon2 c.G151A p.E51K . . . ARHGEF5 7984 broad.mit.edu 36 7 143691168 143691168 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005435 exon2 c.C473A p.S158Y . . . GIMAP6 474344 broad.mit.edu 36 7 149955770 149955770 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024711 exon3 c.C849T p.H283H . . . ABP1 26 broad.mit.edu 36 7 150185983 150185983 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001091 exon2 c.G1492A p.G498S . . . CHPF2 54480 broad.mit.edu 36 7 150566074 150566074 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_019015 exon4 c.G1693A p.A565T . . . SMARCD3 6604 broad.mit.edu 36 7 150569964 150569964 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003078 exon8 c.G670A p.G224S . . . MLL3 58508 broad.mit.edu 36 7 151495240 151495240 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170606 exon42 c.A9674G p.E3225G . . . DPP6 1804 broad.mit.edu 36 7 154276445 154276445 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039350 exon17 c.G1497T p.T499T . . . ESYT2 57488 broad.mit.edu 36 7 158283405 158283405 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020728 exon3 c.G640A p.V214M . . . VIPR2 7434 broad.mit.edu 36 7 158520053 158520053 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003382 exon9 c.C859T p.P287S . . . PRPS1L1 221823 broad.mit.edu 36 7 18033083 18033083 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175886 exon1 c.A848G p.H283R . . . HDAC9 9734 broad.mit.edu 36 7 18650890 18650890 + Silent SNP T G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178423 exon9 c.T975G p.P325P . . . CDCA7L 55536 broad.mit.edu 36 7 21909243 21909243 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127371 exon8 c.C1074T p.P358P . . . MPP6 51678 broad.mit.edu 36 7 24647953 24647953 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016447 exon4 c.A211G p.I71V . . . HOXA1 3198 broad.mit.edu 36 7 27101722 27101722 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153620 exon1 c.C335T p.A112V . . . HOXA6 3203 broad.mit.edu 36 7 27151987 27151987 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024014 exon2 c.G517T p.E173X . . . BBS9 27241 broad.mit.edu 36 7 33540131 33540131 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033605 exon20 c.T2324C p.L775S . . . DPY19L1 23333 broad.mit.edu 36 7 34964173 34964173 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015283 exon11 c.G908T p.G303V . . . KIAA0895 23366 broad.mit.edu 36 7 36363574 36363574 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100425 exon3 c.T329C p.V110A . . . ELMO1 9844 broad.mit.edu 36 7 37265354 37265354 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014800 exon6 c.G370A p.D124N . . . C7orf11 136647 broad.mit.edu 36 7 40140378 40140378 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138701 exon1 c.C314A p.P105Q . . . HECW1 23072 broad.mit.edu 36 7 43498251 43498251 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015052 exon18 c.A3287G p.H1096R . . . NPC1L1 29881 broad.mit.edu 36 7 44542493 44542493 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013389 exon4 c.G1741A p.A581T . . . TMED4 222068 broad.mit.edu 36 7 44587308 44587308 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182547 exon4 c.C443T p.A148V . . . ADCY1 107 broad.mit.edu 36 7 45692712 45692712 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021116 exon14 c.C2369T p.A790V . . . ADCY1 107 broad.mit.edu 36 7 45710707 45710707 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021116 exon17 c.C2784T p.A928A . . . SUN3 256979 broad.mit.edu 36 7 48000545 48000545 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152782 exon9 c.C753T p.I251I . . . ABCA13 154664 broad.mit.edu 36 7 48345618 48345618 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152701 exon26 c.G9890A p.C3297Y . . . CYTH3 9265 broad.mit.edu 36 7 6171940 6171940 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004227 exon10 c.C850A p.R284R . . . GUSB 2990 broad.mit.edu 36 7 65070279 65070279 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000181 exon10 c.C1527T p.H509H . . . KCTD7 154881 broad.mit.edu 36 7 65735763 65735763 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167961 exon2 c.T211C p.C71R . . . WBSCR17 64409 broad.mit.edu 36 7 70518903 70518903 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022479 exon4 c.C682T p.R228C . . . COL28A1 340267 broad.mit.edu 36 7 7379202 7379202 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037763 exon32 c.A2860G p.T954A . . . CACNA2D1 781 broad.mit.edu 36 7 81462173 81462173 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000722 exon20 c.G1681A p.D561N . . . SEMA3E 9723 broad.mit.edu 36 7 82867426 82867426 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012431 exon11 c.G1220C p.S407T . . . ABCB1 5243 broad.mit.edu 36 7 86971587 86971587 + Missense_Mutation SNP C T T rs45456698 unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000927 exon29 c.G3751A p.V1251I . . . AKAP9 10142 broad.mit.edu 36 7 91564569 91564569 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147185 exon41 c.C10336T p.R3446X . . . KRIT1 889 broad.mit.edu 36 7 91681164 91681164 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194455 exon16 c.A1796G p.N599S . . . TFPI2 7980 broad.mit.edu 36 7 93357474 93357474 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006528 exon2 c.G182A p.C61Y . . . BET1 10282 broad.mit.edu 36 7 93466461 93466461 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005868 exon2 c.G101T p.R34M . . . LMTK2 22853 broad.mit.edu 36 7 97660240 97660240 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014916 exon11 c.A2527G p.T843A . . . TRRAP 8295 broad.mit.edu 36 7 98385636 98385636 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003496 exon36 c.G5074T p.D1692Y . . . CPSF4 10898 broad.mit.edu 36 7 98883821 98883821 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081559 exon3 c.A296G p.Y99C . . . STAG3 10734 broad.mit.edu 36 7 99634489 99634489 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012447 exon14 c.T1440C p.L480L . . . UPK3B 80761 broad.mit.edu 36 7 75978038 75978038 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_030570 exon1 c.133delG p.G45fs . . . PTPN12 5782 broad.mit.edu 36 7 77103089 77103089 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001131009 exon14 c.1739delA p.Q580fs . . . VPS13B 157680 broad.mit.edu 36 8 100184454 100184454 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152564 exon5 c.C510T p.S170S . . . DPYS 1807 broad.mit.edu 36 8 105528889 105528889 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001385 exon3 c.A442T p.I148F . . . NUDCD1 84955 broad.mit.edu 36 8 110324675 110324675 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032869 exon10 c.A1491T p.K497N . . . PKHD1L1 93035 broad.mit.edu 36 8 110558036 110558036 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177531 exon52 c.C8881T p.H2961Y . . . KCNV1 27012 broad.mit.edu 36 8 111053876 111053876 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014379 exon2 c.C778T p.R260C . . . TRPS1 7227 broad.mit.edu 36 8 116685580 116685580 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014112 exon4 c.G1791A p.P597P . . . USP17L2 377630 broad.mit.edu 36 8 12032249 12032249 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201402 exon1 c.A1430G p.N477S . . . ENPP2 5168 broad.mit.edu 36 8 120677287 120677287 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006209 exon12 c.C1109T p.A370V . . . ATAD2 29028 broad.mit.edu 36 8 124404408 124404408 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014109 exon27 c.A4082G p.Q1361R . . . KLHL38 340359 broad.mit.edu 36 8 124727325 124727325 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081675 exon3 c.C1581T p.G527G . . . KLHL38 340359 broad.mit.edu 36 8 124734207 124734207 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081675 exon1 c.C141T p.C47C . . . OC90 729330 broad.mit.edu 36 8 133113361 133113361 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080399 exon12 c.G980A p.G327D . . . OC90 729330 broad.mit.edu 36 8 133122549 133122549 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080399 exon6 c.C381T p.A127A . . . ARC 23237 broad.mit.edu 36 8 143691950 143691950 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015193 exon1 c.C685T p.R229W . . . CYP11B2 1585 broad.mit.edu 36 8 143995505 143995505 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000498 exon2 c.C367T p.R123C . . . LY6E 4061 broad.mit.edu 36 8 144174220 144174220 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002346 exon3 c.G167A p.G56D . . . TOP1MT 116447 broad.mit.edu 36 8 144469612 144469612 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052963 exon11 c.A1390G p.I464V . . . ZC3H3 23144 broad.mit.edu 36 8 144619045 144619045 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015117 exon9 c.C2292T p.C764C . . . ARHGEF10 9639 broad.mit.edu 36 8 1864211 1864211 + Missense_Mutation SNP C T T rs35925274 unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014629 exon24 c.C2909T p.T970M . . . PIWIL2 55124 broad.mit.edu 36 8 22193035 22193035 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018068 exon2 c.C191T p.A64V . . . TNFRSF10B 8795 broad.mit.edu 36 8 22936321 22936321 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003842 exon9 c.C1131A p.G377G . . . ADAM28 10863 broad.mit.edu 36 8 24249029 24249029 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021777 exon14 c.C1497T p.H499H . . . CDCA2 157313 broad.mit.edu 36 8 25396913 25396913 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152562 exon9 c.G1114A p.E372K . . . CSMD1 64478 broad.mit.edu 36 8 2823550 2823550 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon55 c.A8558G p.Q2853R . . . EXTL3 2137 broad.mit.edu 36 8 28629759 28629759 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001440 exon3 c.G264A p.S88S . . . CSMD1 64478 broad.mit.edu 36 8 2863527 2863527 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon52 c.G7909A p.V2637I . . . TEX15 56154 broad.mit.edu 36 8 30821647 30821647 + Silent SNP T G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031271 exon1 c.A4429C p.R1477R . . . PROSC 11212 broad.mit.edu 36 8 37742251 37742251 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_007198 exon2 c.C149T p.P50L . . . WHSC1L1 54904 broad.mit.edu 36 8 38256311 38256311 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023034 exon21 c.A3664G p.M1222V . . . ANK1 286 broad.mit.edu 36 8 41692364 41692364 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020475 exon14 c.T1565A p.L522H . . . MYST3 7994 broad.mit.edu 36 8 41917965 41917965 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099413 exon16 c.G2591A p.R864Q . . . HGSNAT 138050 broad.mit.edu 36 8 43121333 43121333 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152419 exon2 c.C204A p.T68T . . . PXDNL 137902 broad.mit.edu 36 8 52528710 52528710 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144651 exon10 c.C1171T p.R391W . . . OPRK1 4986 broad.mit.edu 36 8 54304823 54304823 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000912 exon4 c.G730A p.V244I . . . ATP6V1H 51606 broad.mit.edu 36 8 54844769 54844769 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015941 exon11 c.T1137C p.N379N . . . FAM110B 90362 broad.mit.edu 36 8 59221726 59221726 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147189 exon5 c.C383T p.S128F . . . TOX 9760 broad.mit.edu 36 8 59926717 59926717 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014729 exon4 c.C613T p.P205S . . . CHD7 55636 broad.mit.edu 36 8 61929573 61929573 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017780 exon32 c.C6873T p.D2291D . . . CSPP1 79848 broad.mit.edu 36 8 68160840 68160840 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024790 exon4 c.C352T p.R118W . . . CPA6 57094 broad.mit.edu 36 8 68559470 68559470 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020361 exon7 c.A745G p.N249D . . . PRDM14 63978 broad.mit.edu 36 8 71144186 71144186 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024504 exon2 c.C464T p.A155V . . . TRPA1 8989 broad.mit.edu 36 8 73111190 73111190 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007332 exon21 c.G2442A p.T814T . . . CRISPLD1 83690 broad.mit.edu 36 8 76087694 76087694 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031461 exon4 c.C392T p.T131M . . . ZFHX4 79776 broad.mit.edu 36 8 77938789 77938789 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024721 exon11 c.C10284T p.F3428F . . . SGK223 157285 broad.mit.edu 36 8 8213242 8213242 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080826 exon5 c.C4053A p.I1351I . . . SGK223 157285 broad.mit.edu 36 8 8213685 8213685 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080826 exon5 c.C3610T p.Q1204X . . . ATP6V0D2 245972 broad.mit.edu 36 8 87180337 87180337 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152565 exon1 c.C14T p.A5V . . . CNBD1 168975 broad.mit.edu 36 8 87947920 87947920 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173538 exon1 c.T81C p.S27S . . . CNBD1 168975 broad.mit.edu 36 8 88287464 88287464 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173538 exon5 c.T559C p.W187R . . . CNBD1 168975 broad.mit.edu 36 8 88366075 88366075 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173538 exon7 c.G825A p.S275S . . . FAM92A1 137392 broad.mit.edu 36 8 94791176 94791176 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145269 exon5 c.C440T p.A147V . . . RBM12B 389677 broad.mit.edu 36 8 94815493 94815493 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203390 exon3 c.G2322A p.P774P . . . TSPYL5 85453 broad.mit.edu 36 8 98358016 98358016 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033512 exon1 c.T1233C p.P411P . . . STK3 6788 broad.mit.edu 36 8 99848647 99848647 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006281 exon3 c.G236T p.S79I . . . SEC61B 10952 broad.mit.edu 36 9 101032520 101032520 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006808 exon4 c.G284A p.R95H . . . C9orf125 84302 broad.mit.edu 36 9 103278522 103278522 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032342 exon2 c.A674T p.E225V . . . KIAA1958 158405 broad.mit.edu 36 9 114462063 114462063 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133465 exon4 c.G2044A p.V682I . . . POLE3 54107 broad.mit.edu 36 9 115211781 115211781 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017443 exon4 c.T201C p.S67S . . . TNC 3371 broad.mit.edu 36 9 116889051 116889051 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002160 exon3 c.C780T p.H260H . . . PAPPA 5069 broad.mit.edu 36 9 118137004 118137004 + Silent SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002581 exon13 c.T3441A p.P1147P . . . ASTN2 23245 broad.mit.edu 36 9 118242843 118242843 + De_novo_Start_OutOfFrame SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198186 exon7 c.G951T p.K317N . . . TRIM32 22954 broad.mit.edu 36 9 118500524 118500524 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099679 exon2 c.C682T p.L228F . . . ASTN2 23245 broad.mit.edu 36 9 118778878 118778878 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014010 exon7 c.C1446T p.C482C . . . DBC1 1620 broad.mit.edu 36 9 120969869 120969869 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014618 exon8 c.C1600T p.R534C . . . C5 727 broad.mit.edu 36 9 122771198 122771198 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001735 exon33 c.C4182T p.Y1394Y . . . CEP110 11064 broad.mit.edu 36 9 122943586 122943586 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007018 exon16 c.A2590G p.R864G . . . OR1L6 392390 broad.mit.edu 36 9 124552306 124552306 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004453 exon1 c.C359T p.A120V . . . NR6A1 2649 broad.mit.edu 36 9 126356578 126356578 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033334 exon3 c.G235T p.G79C . . . SH2D3C 10044 broad.mit.edu 36 9 129546702 129546702 + Silent SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142532 exon6 c.C700A p.R234R . . . BAT2L1 84726 broad.mit.edu 36 9 133341401 133341401 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013318 exon15 c.G4064A p.G1355D . . . POMT1 10585 broad.mit.edu 36 9 133369531 133369531 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007171 exon2 c.C105A p.T35T . . . C9orf171 389799 broad.mit.edu 36 9 134364660 134364660 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207417 exon4 c.G484A p.G162R . . . BARHL1 56751 broad.mit.edu 36 9 134448335 134448335 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020064 exon1 c.C330A p.A110A . . . DDX31 64794 broad.mit.edu 36 9 134483592 134483592 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022779 exon18 c.G2086T p.V696L . . . RALGDS 5900 broad.mit.edu 36 9 134969501 134969501 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006266 exon10 c.C1641T p.P547P . . . COL5A1 1289 broad.mit.edu 36 9 136762022 136762022 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000093 exon7 c.G1044A p.T348T . . . COL5A1 1289 broad.mit.edu 36 9 136850400 136850400 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000093 exon55 c.G4308A p.P1436P . . . LCN1 3933 broad.mit.edu 36 9 137553194 137553194 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002297 exon1 c.T30C p.L10L . . . COBRA1 25920 broad.mit.edu 36 9 139286406 139286406 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015456 exon11 c.G1398A p.T466T . . . PNPLA7 375775 broad.mit.edu 36 9 139494644 139494644 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152286 exon22 c.C2446T p.R816C . . . IFNB1 3456 broad.mit.edu 36 9 21067312 21067312 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002176 exon1 c.G557A p.R186Q . . . IFNA4 3441 broad.mit.edu 36 9 21177406 21177406 + Missense_Mutation SNP G A A rs2230853 byFrequency TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021068 exon1 c.C125T p.A42V . . . UNC13B 10497 broad.mit.edu 36 9 35365189 35365189 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006377 exon13 c.C1359T p.D453D . . . RUSC2 9853 broad.mit.edu 36 9 35548361 35548361 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014806 exon7 c.A3228G p.T1076T . . . C9orf100 84904 broad.mit.edu 36 9 35652255 35652255 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032818 exon8 c.C913A p.P305T . . . FBXO10 26267 broad.mit.edu 36 9 37506069 37506069 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012166 exon10 c.G2528A p.R843Q . . . SLC1A1 6505 broad.mit.edu 36 9 4551502 4551502 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004170 exon3 c.G286A p.V96M . . . RCL1 10171 broad.mit.edu 36 9 4816944 4816944 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005772 exon3 c.C295A p.L99M . . . ERMP1 79956 broad.mit.edu 36 9 5820927 5820927 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024896 exon2 c.T440C p.I147T . . . ANKRD20A3 441425 broad.mit.edu 36 9 67558105 67558105 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001012419 exon15 c.C1844G p.A615G . . . PRUNE2 158471 broad.mit.edu 36 9 78510229 78510229 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015225 exon8 c.C6781T p.P2261S . . . PRUNE2 158471 broad.mit.edu 36 9 78512750 78512750 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015225 exon8 c.C4260T p.S1420S . . . KIF27 55582 broad.mit.edu 36 9 85672538 85672538 + Missense_Mutation SNP G A A rs3199677 unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017576 exon13 c.C2815T p.R939C . . . GOLM1 51280 broad.mit.edu 36 9 87884014 87884014 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177937 exon2 c.G42A p.P14P . . . SEMA4D 10507 broad.mit.edu 36 9 91197193 91197193 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142287 exon10 c.C587A p.P196H . . . SEMA4D 10507 broad.mit.edu 36 9 91207635 91207635 + Missense_Mutation SNP C T T rs62620228 unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142287 exon6 c.G223A p.A75T . . . CENPP 401541 broad.mit.edu 36 9 94413433 94413433 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012267 exon6 c.C581T p.A194V . . . NINJ1 4814 broad.mit.edu 36 9 94928594 94928594 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004148 exon2 c.G223A p.A75T . . . HIATL1 84641 broad.mit.edu 36 9 96231317 96231317 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032558 exon3 c.A230G p.H77R . . . TDRD7 23424 broad.mit.edu 36 9 99297940 99297940 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014290 exon17 c.A3251C p.H1084P . . . WNK2 65268 broad.mit.edu 36 9 95094701 95094701 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006648 exon22 c.5133delG p.V1711fs . . . TMEM35 59353 broad.mit.edu 36 X 100220656 100220656 + Silent SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021637 exon1 c.C9A p.S3S . . . TMEM35 59353 broad.mit.edu 36 X 100220722 100220722 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021637 exon1 c.T75C p.T25T . . . ARMCX1 51309 broad.mit.edu 36 X 100695625 100695625 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016608 exon4 c.A1056G p.I352M . . . COL4A5 1287 broad.mit.edu 36 X 107720967 107720967 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000495 exon20 c.G1189T p.G397C . . . RHOXF2B 727940 broad.mit.edu 36 X 119095142 119095142 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032498 exon2 c.C219T p.G73G . . . FAM70A 55026 broad.mit.edu 36 X 119329160 119329160 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001104545 exon1 c.C33T p.S11S . . . TLR8 51311 broad.mit.edu 36 X 12847104 12847104 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138636 exon2 c.G24A p.S8S . . . UTP14A 10813 broad.mit.edu 36 X 128869083 128869083 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006649 exon2 c.G86C p.S29T . . . ELF4 2000 broad.mit.edu 36 X 129032699 129032699 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001421 exon7 c.T806C p.L269P . . . RBMX2 51634 broad.mit.edu 36 X 129374165 129374165 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016024 exon6 c.G631A p.E211K . . . GPC3 2719 broad.mit.edu 36 X 132715766 132715766 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164618 exon3 c.A393T p.E131D . . . ZNF75D 7626 broad.mit.edu 36 X 134249095 134249095 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007131 exon6 c.A1173G p.K391K . . . SAGE1 55511 broad.mit.edu 36 X 134817995 134817995 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018666 exon11 c.C1241T p.T414I . . . MAP7D3 79649 broad.mit.edu 36 X 135150989 135150989 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173517 exon5 c.A531C p.K177N . . . GPR112 139378 broad.mit.edu 36 X 135257727 135257727 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153834 exon6 c.A4196G p.N1399S . . . SOX3 6658 broad.mit.edu 36 X 139414429 139414429 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005634 exon1 c.C463T p.R155C . . . GPR50 9248 broad.mit.edu 36 X 150099737 150099737 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004224 exon2 c.G1024A p.A342T . . . VMA21 203547 broad.mit.edu 36 X 150324126 150324126 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017980 exon3 c.C244A p.L82I . . . GABRE 2564 broad.mit.edu 36 X 150874154 150874154 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004961 exon9 c.G1196A p.R399H . . . ZNF185 7739 broad.mit.edu 36 X 151837269 151837269 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007150 exon6 c.G346A p.A116T . . . ZNF275 10838 broad.mit.edu 36 X 152265993 152265993 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080485 exon4 c.A656G p.K219R . . . AVPR2 554 broad.mit.edu 36 X 152824226 152824226 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000054 exon2 c.C72A p.S24R . . . F8 2157 broad.mit.edu 36 X 153904002 153904002 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000132 exon1 c.C20T p.T7I . . . CTPS2 56474 broad.mit.edu 36 X 16567241 16567241 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144002 exon14 c.T1343C p.M448T . . . BEND2 139105 broad.mit.edu 36 X 18148781 18148781 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153346 exon1 c.G11T p.R4M . . . PHKA2 5256 broad.mit.edu 36 X 18834779 18834779 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000292 exon24 c.C2672T p.T891M . . . GPR64 10149 broad.mit.edu 36 X 18951953 18951953 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184837 exon10 c.A415C p.S139R . . . GYG2 8908 broad.mit.edu 36 X 2787918 2787918 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184703 exon8 c.G742A p.G248R . . . FAM47B 170062 broad.mit.edu 36 X 34871217 34871217 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152631 exon1 c.G348A p.A116A . . . SYTL5 94122 broad.mit.edu 36 X 37850813 37850813 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138780 exon11 c.C1179T p.S393S . . . SYTL5 94122 broad.mit.edu 36 X 37866283 37866283 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138780 exon15 c.A1712G p.K571R . . . BCOR 54880 broad.mit.edu 36 X 39817698 39817698 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001123383 exon4 c.G1845A p.K615K . . . USP9X 8239 broad.mit.edu 36 X 40873331 40873331 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039590 exon3 c.C231T p.D77D . . . GPR34 2857 broad.mit.edu 36 X 41440032 41440032 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005300 exon3 c.G202T p.G68X . . . USP11 8237 broad.mit.edu 36 X 46986461 46986461 + Missense_Mutation SNP C T T rs6609463 byHapMap TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004651 exon10 c.C1345T p.R449W . . . CCDC120 90060 broad.mit.edu 36 X 48811897 48811897 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163323 exon10 c.C1162T p.R388C . . . CACNA1F 778 broad.mit.edu 36 X 48969465 48969465 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005183 exon13 c.C1534T p.R512C . . . PPP1R3F 89801 broad.mit.edu 36 X 49029335 49029335 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033215 exon4 c.G1239A p.P413P . . . KDM5C 8242 broad.mit.edu 36 X 53240327 53240327 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004187 exon23 c.C3757A p.P1253T . . . WNK3 65267 broad.mit.edu 36 X 54281628 54281628 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002838 exon19 c.G3745T p.E1249X . . . PFKFB1 5207 broad.mit.edu 36 X 54988603 54988603 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002625 exon10 c.G1092T p.K364N . . . RRAGB 10325 broad.mit.edu 36 X 55774618 55774618 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016656 exon6 c.C474T p.R158R . . . KLF8 11279 broad.mit.edu 36 X 56327606 56327606 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007250 exon6 c.G1034A p.R345H . . . NLGN4X 57502 broad.mit.edu 36 X 5821121 5821121 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020742 exon6 c.A2188G p.M730V . . . MTMR8 55613 broad.mit.edu 36 X 63405516 63405516 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017677 exon14 c.A1741G p.T581A . . . PJA1 64219 broad.mit.edu 36 X 68298835 68298835 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001032396 exon2 c.C807T p.D269D . . . FOXO4 4303 broad.mit.edu 36 X 70233375 70233375 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005938 exon1 c.C272A p.P91H . . . ZMYM3 9203 broad.mit.edu 36 X 70384756 70384756 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171162 exon11 c.G1956T p.E652D . . . ITGB1BP2 26548 broad.mit.edu 36 X 70439074 70439074 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012278 exon4 c.A260T p.Q87L . . . ERCC6L 54821 broad.mit.edu 36 X 71342330 71342330 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017669 exon2 c.T3012C p.S1004S . . . RPS4X 6191 broad.mit.edu 36 X 71412220 71412220 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007 exon3 c.A161G p.Y54C . . . DMRTC1 63947 broad.mit.edu 36 X 72009114 72009114 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080851 exon6 c.G476T p.G159V . . . KIAA2022 340533 broad.mit.edu 36 X 73877166 73877166 + Silent SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008537 exon3 c.C3951T p.S1317S . . . ATRX 546 broad.mit.edu 36 X 76762523 76762523 + Silent SNP A G G novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000489 exon20 c.T5268C p.I1756I . . . KLHL4 56062 broad.mit.edu 36 X 86759767 86759767 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057162 exon4 c.G904A p.V302M . . . PABPC5 140886 broad.mit.edu 36 X 90578228 90578228 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080832 exon2 c.A996C p.K332N . . . SHROOM2 357 broad.mit.edu 36 X 9860449 9860449 + Silent SNP T C C novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001649 exon6 c.T3126C p.H1042H . . . SHROOM2 357 broad.mit.edu 36 X 9867300 9867300 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001649 exon8 c.C4205T p.S1402L . . . SHROOM2 357 broad.mit.edu 36 X 9874830 9874830 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001649 exon10 c.C4704T p.S1568S . . . TNMD 64102 broad.mit.edu 36 X 99741223 99741223 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022144 exon7 c.C807T p.C269C . . . SYTL4 94121 broad.mit.edu 36 X 99830091 99830091 + Silent SNP C T T novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129896 exon11 c.G918A p.E306E . . . TFE3 7030 broad.mit.edu 36 X 48783604 48783604 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3710-01A-01W-0995-10 TCGA-AA-3710-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006521 exon3 c.506delC p.P169fs . . .