Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
C10orf120	399814	broad.mit.edu	36	10	124447534	124447534	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001010912	exon3	c.G713C	p.R238T	.	.	.
EBF3	253738	broad.mit.edu	36	10	131561818	131561818	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005463	exon8	c.C669A	p.G223G	.	.	.
SYT15	83849	broad.mit.edu	36	10	46387635	46387635	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_181519	exon4	c.C448T	p.R150W	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7449842	7449842	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001029880	exon4	c.C211A	p.Q71K	.	.	.
GRID1	2894	broad.mit.edu	36	10	87474125	87474125	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017551	exon11	c.G1822A	p.A608T	.	.	.
MYOF	26509	broad.mit.edu	36	10	95111291	95111291	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133337	exon27	c.C2843T	p.A948V	.	.	.
USP28	57646	broad.mit.edu	36	11	113205258	113205258	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020886	exon10	c.T930G	p.N310K	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1225162	1225162	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002458	exon31	c.C10476A	p.S3492S	.	.	.
OR5AN1	390195	broad.mit.edu	36	11	58888875	58888875	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004729	exon1	c.G368A	p.R123H	.	.	.
SPTBN2	6712	broad.mit.edu	36	11	66214313	66214313	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006946	exon27	c.C5583T	p.D1861D	.	.	.
XRRA1	143570	broad.mit.edu	36	11	74240718	74240718	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182969	exon13	c.G1204A	p.V402I	.	.	.
PRKRIR	5612	broad.mit.edu	36	11	75740865	75740865	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004705	exon5	c.G977A	p.R326H	.	.	.
NAALAD2	10003	broad.mit.edu	36	11	89525251	89525251	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005467	exon6	c.A747T	p.L249F	.	.	.
TAS2R30	259293	broad.mit.edu	36	12	11177625	11177625	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001097643	exon1	c.G486A	p.V162V	.	.	.
MAP3K12	7786	broad.mit.edu	36	12	52162975	52162975	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001193511	exon11	c.C1879G	p.L627V	.	.	.
NCAPD2	9918	broad.mit.edu	36	12	6510180	6510180	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014865	exon30	c.C3900T	p.I1300I	.	.	.
CD163	9332	broad.mit.edu	36	12	7542880	7542881	+	Missense_Mutation	DNP	CC	GA	GA	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_203416	exon4	c.628_629TC	.	.	.	.
TMTC2	160335	broad.mit.edu	36	12	81814319	81814319	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152588	exon3	c.G1246C	p.G416R	.	.	.
A2M	2	broad.mit.edu	36	12	9120624	9120624	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000014	exon28	c.A3527T	p.K1176M	.	.	.
FGD6	55785	broad.mit.edu	36	12	94127003	94127003	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018351	exon2	c.G2188C	p.E730Q	.	.	.
KLRB1	3820	broad.mit.edu	36	12	9642365	9642365	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002258	exon4	c.A411G	p.E137E	.	.	.
CDKN1B	1027	broad.mit.edu	36	12	12762449	12762449	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004064	exon1	c.409delC	p.P137fs	.	.	.
RNF17	56163	broad.mit.edu	36	13	24349141	24349141	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001184993	exon34	c.C4578G	p.C1526W	.	.	.
SOHLH2	54937	broad.mit.edu	36	13	35642739	35642739	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017826	exon10	c.G1186T	p.V396F	.	.	.
ARL11	115761	broad.mit.edu	36	13	49102782	49102782	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138450	exon2	c.G198A	p.G66G	.	.	.
C13orf34	79866	broad.mit.edu	36	13	72218925	72218925	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024808	exon10	c.G1157A	p.R386Q	.	.	.
AKAP6	9472	broad.mit.edu	36	14	31972618	31972618	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004274	exon2	c.C168T	p.P56P	.	.	.
TRIM9	114088	broad.mit.edu	36	14	50518541	50518541	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015163	exon8	c.C1634T	p.A545V	.	.	.
GRAMD2	196996	broad.mit.edu	36	15	70241736	70241736	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012642	exon11	c.G993A	p.A331A	.	.	.
IDH2	3418	broad.mit.edu	36	15	88431365	88431365	+	Nonsense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002168	exon7	c.C950G	p.S317X	.	.	.
PDILT	204474	broad.mit.edu	36	16	20278265	20278265	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_174924	exon12	c.C1632T	p.Y544Y	.	.	.
SETD1A	9739	broad.mit.edu	36	16	30884993	30884993	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014712	exon8	c.G2290C	p.V764L	.	.	.
CHD9	80205	broad.mit.edu	36	16	51845854	51845854	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025134	exon18	c.C3865A	p.Q1289K	.	.	.
CSNK2A2	1459	broad.mit.edu	36	16	56759181	56759181	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001896	exon7	c.G533A	p.G178D	.	.	.
ELMO3	79767	broad.mit.edu	36	16	65792355	65792356	+	Missense_Mutation	DNP	AG	GC	GC	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024712	exon8	c.886_887GC	.	.	.	.
NFATC3	4775	broad.mit.edu	36	16	66782806	66782806	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173163	exon9	c.A2733T	p.Q911H	.	.	.
VTN	7448	broad.mit.edu	36	17	23720472	23720472	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000638	exon4	c.C634T	p.R212C	.	.	.
CDK12	51755	broad.mit.edu	36	17	34940613	34940613	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016507	exon14	c.C3991T	p.R1331X	.	.	.
KRT9	3857	broad.mit.edu	36	17	36981485	36981485	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000226	exon1	c.G286A	p.G96S	.	.	.
MAPT	4137	broad.mit.edu	36	17	41416947	41416947	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016835	exon6	c.G940C	p.E314Q	.	.	.
OSBPL7	114881	broad.mit.edu	36	17	43241482	43241482	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_145798	exon20	c.A2129G	p.Y710C	.	.	.
CD300C	10871	broad.mit.edu	36	17	70052553	70052553	+	Nonsense_Mutation	SNP	G	A	A	rs59461308	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006678	exon2	c.C190T	p.R64X	.	.	.
TP53	7157	broad.mit.edu	36	17	7520042	7520042	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon4	c.T370G	p.C124G	 TP53,ovary,NS,Substitution - Missense,0 	.	.
ASXL3	80816	broad.mit.edu	36	18	29578441	29578441	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030632	exon12	c.C4631A	p.A1544E	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6933326	6933326	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005559	exon62	c.G8920A	p.D2974N	.	.	.
NWD1	284434	broad.mit.edu	36	19	16771774	16771774	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001007525	exon17	c.C3537T	p.R1179R	.	.	.
ZNF100	163227	broad.mit.edu	36	19	21702281	21702281	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173531	exon5	c.A673G	p.R225G	.	.	.
C19orf46	163183	broad.mit.edu	36	19	41186110	41186110	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039876	exon8	c.T1184C	p.L395P	.	.	.
ZNF420	147923	broad.mit.edu	36	19	42310076	42310076	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144689	exon5	c.G343A	p.D115N	.	.	.
HKR1	284459	broad.mit.edu	36	19	42546399	42546399	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_181786	exon6	c.A1862C	p.H621P	.	.	.
ZNF780A	284323	broad.mit.edu	36	19	45272744	45272744	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001142578	exon6	c.T1445G	p.F482C	.	.	.
CEACAM20	125931	broad.mit.edu	36	19	49712923	49712923	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001102597	exon6	c.C1233T	p.D411D	.	.	.
SYT5	6861	broad.mit.edu	36	19	60378150	60378150	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003180	exon7	c.C738T	p.S246S	.	.	.
PPP6R1	22870	broad.mit.edu	36	19	60439949	60439949	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014931	exon17	c.A1862G	p.D621G	.	.	.
COL5A3	50509	broad.mit.edu	36	19	9932546	9932546	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015719	exon66	c.C4872T	p.D1624D	.	.	.
CD101	9398	broad.mit.edu	36	1	117362338	117362338	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004258	exon6	c.G1650A	p.P550P	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118352288	118352288	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_206996	exon31	c.C4489T	p.R1497C	.	.	.
UBAP2L	9898	broad.mit.edu	36	1	152493103	152493103	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014847	exon15	c.C1768T	p.P590S	.	.	.
CASQ1	844	broad.mit.edu	36	1	158431447	158431447	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001231	exon4	c.T487C	p.L163L	.	.	.
TNFSF18	8995	broad.mit.edu	36	1	171286509	171286509	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005092	exon1	c.T217A	p.L73I	.	.	.
ABL2	27	broad.mit.edu	36	1	177344930	177344930	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001168236	exon11	c.G2032A	p.D678N	.	.	.
CACNA1E	777	broad.mit.edu	36	1	180030750	180030750	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000721	exon45	c.G6026A	p.R2009Q	.	.	.
CFH	3075	broad.mit.edu	36	1	194981705	194981705	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000186	exon21	c.G3446A	p.R1149Q	.	.	.
PRELP	5549	broad.mit.edu	36	1	201719876	201719876	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002725	exon2	c.A941G	p.E314G	.	.	.
SLC30A10	55532	broad.mit.edu	36	1	218155625	218155625	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018713	exon4	c.C1247T	p.P416L	.	.	.
LRRIQ3	127255	broad.mit.edu	36	1	74421715	74421715	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001105659	exon2	c.G242A	p.G81E	.	.	.
ASB17	127247	broad.mit.edu	36	1	76170436	76170436	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080868	exon1	c.C129T	p.Y43Y	.	.	.
PTGFR	5737	broad.mit.edu	36	1	78731315	78731315	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000959	exon2	c.G299A	p.R100H	.	.	.
SNX7	51375	broad.mit.edu	36	1	98923187	98923187	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152238	exon2	c.C339A	p.F113L	.	.	.
LPPR4	9890	broad.mit.edu	36	1	99544505	99544505	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014839	exon7	c.C1643T	p.P548L	.	.	.
ADRA1D	146	broad.mit.edu	36	20	4150679	4150680	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000678	exon2	c.1210_1211insC	p.C404fs	.	.	.
DTD1	92675	broad.mit.edu	36	20	18672808	18672808	+	Nonsense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080820	exon5	c.C542G	p.S181X	.	.	.
ZNF341	84905	broad.mit.edu	36	20	31832760	31832760	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032819	exon11	c.G1604T	p.C535F	.	.	.
MATN4	8785	broad.mit.edu	36	20	43366380	43366380	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003833	exon3	c.G545A	p.R182H	.	.	.
ZNF335	63925	broad.mit.edu	36	20	44019922	44019922	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022095	exon16	c.G2306T	p.C769F	.	.	.
ZNF335	63925	broad.mit.edu	36	20	44031735	44031735	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022095	exon3	c.G204A	p.E68E	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31517630	31517630	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003253	exon9	c.G1958A	p.R653H	.	.	.
PDE9A	5152	broad.mit.edu	36	21	42992189	42992189	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001570	exon5	c.C337T	p.R113X	.	.	.
RAB36	9609	broad.mit.edu	36	22	21817624	21817624	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004914	exon1	c.G72A	p.T24T	.	.	.
ACVR1C	130399	broad.mit.edu	36	2	158098754	158098754	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001111031	exon9	c.C1254T	p.N418N	.	.	.
TTN	7273	broad.mit.edu	36	2	179368156	179368156	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133379	exon7	c.G983A	p.R328H	.	.	.
ASB18	401036	broad.mit.edu	36	2	236768408	236768408	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_212556	exon6	c.C1247A	p.A416D	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48701584	48701584	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006872	exon2	c.G112A	p.D38N	.	.	.
EFEMP1	2202	broad.mit.edu	36	2	55998650	55998650	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039348	exon5	c.T171A	p.G57G	.	.	.
MCEE	84693	broad.mit.edu	36	2	71205015	71205016	+	Missense_Mutation	DNP	CA	AG	AG	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032601	exon2	c.206_207CT	.	.	.	.
FAM176A	84141	broad.mit.edu	36	2	75573971	75573971	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032181	exon4	c.C358T	p.R120C	.	.	.
PROM2	150696	broad.mit.edu	36	2	95310785	95310785	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144707	exon12	c.G1496T	p.G499V	.	.	.
ILDR1	286676	broad.mit.edu	36	3	123195069	123195069	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175924	exon6	c.C1085G	p.S362C	.	.	.
ESYT3	83850	broad.mit.edu	36	3	139678379	139678379	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031913	exon23	c.G2654C	p.R885T	.	.	.
PCOLCE2	26577	broad.mit.edu	36	3	144049751	144049751	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013363	exon3	c.G446T	p.R149I	.	.	.
FNDC3B	64778	broad.mit.edu	36	3	173553381	173553381	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135095	exon22	c.T2609A	p.L870Q	.	.	.
SATB1	6304	broad.mit.edu	36	3	18411109	18411109	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002971	exon7	c.C1055T	p.P352L	.	.	.
POLR2H	5437	broad.mit.edu	36	3	185564029	185564029	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006232	exon1	c.G55A	p.G19S	.	.	.
RBMS3	27303	broad.mit.edu	36	3	29756240	29756240	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001003793	exon5	c.T425A	p.L142Q	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38937581	38937581	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014139	exon6	c.G882A	p.P294P	.	.	.
LIMD1	8994	broad.mit.edu	36	3	45611921	45611921	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014240	exon1	c.C546T	p.N182N	.	.	.
CELSR3	1951	broad.mit.edu	36	3	48642392	48642392	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040454	exon12	c.G1383T	p.T461T	.	.	.
UGT8	7368	broad.mit.edu	36	4	115816582	115816582	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001128174	exon6	c.C1315T	p.H439Y	.	.	.
PLK4	10733	broad.mit.edu	36	4	129026711	129026711	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001190801	exon5	c.C613T	p.L205F	.	.	.
RAB33B	83452	broad.mit.edu	36	4	140613661	140613661	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031296	exon2	c.T621C	p.L207L	.	.	.
KIT	3815	broad.mit.edu	36	4	55256476	55256476	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000222	exon2	c.C109G	p.P37A	.	.	.
COQ2	27235	broad.mit.edu	36	4	84413683	84413683	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015697	exon3	c.A682C	p.N228H	.	.	.
DMP1	1758	broad.mit.edu	36	4	88802246	88802246	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001079911	exon5	c.G244T	p.G82X	.	.	.
ST8SIA4	7903	broad.mit.edu	36	5	100249979	100249979	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175052	exon3	c.G470C	p.G157A	.	.	.
WDR36	134430	broad.mit.edu	36	5	110456147	110456147	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139281	exon1	c.C262A	p.R88R	.	.	.
PCDHB2	56133	broad.mit.edu	36	5	140456579	140456580	+	Missense_Mutation	DNP	TG	CT	CT	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018936	exon1	c.2021_2022CT	.	.	.	.
PCDHB9	56127	broad.mit.edu	36	5	140547476	140547476	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019119	exon1	c.C400T	p.R134W	.	.	.
PCDHB14	56122	broad.mit.edu	36	5	140585514	140585514	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018934	exon1	c.C2253T	p.Y751Y	.	.	.
PCDHGB6	56100	broad.mit.edu	36	5	140768390	140768390	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018926	exon1	c.C437A	p.A146E	.	.	.
RNF180	285671	broad.mit.edu	36	5	63545741	63545741	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178532	exon4	c.T832A	p.Y278N	.	.	.
RGNEF	64283	broad.mit.edu	36	5	73215375	73215375	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001177693	exon24	c.C2965T	p.R989C	.	.	.
APC	324	broad.mit.edu	36	5	112203074	112203074	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.3830delA	p.E1277fs	 APC,large_intestine,right,Substitution - Nonsense,+1 	.	.
KIAA1244	57221	broad.mit.edu	36	6	138624376	138624376	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020340	exon11	c.G1124A	p.R375H	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152694153	152694153	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033071	exon77	c.G13147A	p.E4383K	.	.	.
PNLDC1	154197	broad.mit.edu	36	6	160159657	160159657	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173516	exon16	c.G1205A	p.R402Q	.	.	.
TAP1	6890	broad.mit.edu	36	6	32923293	32923293	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000593	exon9	c.T2058C	p.S686S	.	.	.
SYNGAP1	8831	broad.mit.edu	36	6	33520319	33520319	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006772	exon16	c.G3529A	p.E1177K	.	.	.
IRF4	3662	broad.mit.edu	36	6	346645	346645	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001195286	exon7	c.G964A	p.G322R	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131546401	131546401	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020911	exon10	c.C2139T	p.P713P	.	.	.
CALD1	800	broad.mit.edu	36	7	134282801	134282801	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033157	exon8	c.G848A	p.R283H	.	.	.
CREB5	9586	broad.mit.edu	36	7	28576623	28576623	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004904	exon5	c.C386T	p.P129L	.	.	.
MAGI2	9863	broad.mit.edu	36	7	77602347	77602347	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012301	exon17	c.G2958T	p.M986I	.	.	.
SEMA3A	10371	broad.mit.edu	36	7	83444429	83444429	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006080	exon15	c.A1672T	p.I558L	.	.	.
DYNC1I1	1780	broad.mit.edu	36	7	95454365	95454365	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004411	exon9	c.A856T	p.K286X	.	.	.
STAG3	10734	broad.mit.edu	36	7	99633428	99633428	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012447	exon11	c.G1157A	p.R386H	.	.	.
FAM183B	340286	broad.mit.edu	36	7	38691801	38691801	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
EFR3A	23167	broad.mit.edu	36	8	133069091	133069091	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015137	exon18	c.T2025C	p.S675S	.	.	.
PREX2	80243	broad.mit.edu	36	8	69092641	69092641	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025170	exon2	c.T148G	p.L50V	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77779214	77779214	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024721	exon2	c.C336T	p.N112N	.	.	.
E2F5	1875	broad.mit.edu	36	8	86306976	86306976	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001083588	exon5	c.615delG	p.M205fs	.	.	.
ZNF462	58499	broad.mit.edu	36	9	108813124	108813124	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021224	exon13	c.A7513T	p.K2505X	.	.	.
PAPPA	5069	broad.mit.edu	36	9	118022172	118022172	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002581	exon5	c.C2054T	p.T685I	.	.	.
LMX1B	4010	broad.mit.edu	36	9	128493078	128493078	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002316	exon3	c.G469A	p.V157M	.	.	.
NPR2	4882	broad.mit.edu	36	9	35797327	35797327	+	Missense_Mutation	SNP	G	A	A	rs55700371	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003995	exon18	c.G2644A	p.V882I	.	.	.
FAM108B1	51104	broad.mit.edu	36	9	73674903	73674903	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001025780	exon3	c.T563A	p.V188D	.	.	.
DIRAS2	54769	broad.mit.edu	36	9	92415476	92415476	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017594	exon2	c.G454A	p.A152T	.	.	.
PTCH1	5727	broad.mit.edu	36	9	97249477	97249477	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001083605	exon23	c.T3429A	p.P1143P	.	.	.
CSF2RA	1438	broad.mit.edu	36	X	1367701	1367701	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172245	exon6	c.G393A	p.A131A	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140824157	140824157	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005462	exon4	c.T3301A	p.S1101T	.	.	.
HCFC1	3054	broad.mit.edu	36	X	152882870	152882870	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005334	exon3	c.G402A	p.P134P	.	.	.
CTPS2	56474	broad.mit.edu	36	X	16617548	16617548	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144002	exon8	c.C818T	p.P273L	.	.	.
SYTL5	94122	broad.mit.edu	36	X	37869497	37869497	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138780	exon16	c.A1844G	p.Y615C	.	.	.
CCDC120	90060	broad.mit.edu	36	X	48811907	48811907	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001163323	exon10	c.C1172T	p.P391L	.	.	.
WNK3	65267	broad.mit.edu	36	X	54336117	54336117	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001002838	exon10	c.G1966A	p.V656I	.	.	.
AR	367	broad.mit.edu	36	X	66854178	66854178	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001011645	exon5	c.G711T	p.L237L	.	.	.
KIAA2022	340533	broad.mit.edu	36	X	73878440	73878440	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008537	exon3	c.G2677T	p.A893S	.	.	.
DACH2	117154	broad.mit.edu	36	X	85836797	85836797	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_053281	exon5	c.C890A	p.P297Q	.	.	.