Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
BCLAF1	9774	hgsc.bcm.edu	36	6	136641602	136641603	+	Frame_Shift_Ins	INS	-	-	TG	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_014739	exon4	c.110_111insCA	p.R37fs	.	.	.
PSMA2	5683	hgsc.bcm.edu	36	7	42928035	42928035	+	Silent	SNP	T	T	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_002787	exon6	c.A477G	p.K159K	.	.	.
CHD6	84181	hgsc.bcm.edu	36	20	39518016	39518016	+	Silent	SNP	T	T	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_032221	exon19	c.A2847G	p.K949K	.	.	.
STMN3	50861	hgsc.bcm.edu	36	20	61746074	61746074	+	Silent	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_015894	exon2	c.C52T	p.L18L	.	.	.
HAO1	54363	hgsc.bcm.edu	36	20	7869007	7869007	+	Silent	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_017545	exon1	c.G63A	p.K21K	.	.	.
EIF3D	8664	hgsc.bcm.edu	36	22	35237656	35237656	+	Silent	SNP	T	T	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_003753	exon14	c.A1473G	p.L491L	.	.	.
PVALB	5816	hgsc.bcm.edu	36	22	35539655	35539655	+	Silent	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_002854	exon4	c.C285T	p.D95D	.	.	.
PHF5A	84844	hgsc.bcm.edu	36	22	40194078	40194078	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_032758	exon2	c.A72C	p.E24D	.	.	.
ARID4A	5926	hgsc.bcm.edu	36	14	57901991	57901991	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_023001	exon21	c.C3214T	p.Q1072X	.	.	.
ACYP1	97	hgsc.bcm.edu	36	14	74600000	74600000	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_203488	exon2	c.G10T	p.G4X	.	.	.
SETD3	84193	hgsc.bcm.edu	36	14	98941432	98941432	+	Silent	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_032233	exon10	c.C954T	p.N318N	.	.	.
USP9Y	8287	hgsc.bcm.edu	36	Y	13357370	13357370	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_004654	exon9	c.A818C	p.K273T	.	.	.
SGCZ	137868	hgsc.bcm.edu	36	8	13992405	13992405	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_139167	exon8	c.G857T	p.C286F	.	.	.
PARP10	84875	hgsc.bcm.edu	36	8	145131242	145131242	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_032789	exon5	c.G916A	p.A306T	.	.	.
SMARCA4	6597	hgsc.bcm.edu	36	19	10961090	10961090	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001128845	exon6	c.G1216A	p.A406T	.	.	.
ZNF507	22847	hgsc.bcm.edu	36	19	37537536	37537536	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_014910	exon2	c.G1960T	p.G654C	.	.	.
PDCD2L	84306	hgsc.bcm.edu	36	19	39592228	39592228	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_032346	exon4	c.T659C	p.I220T	.	.	.
ACTN4	81	hgsc.bcm.edu	36	19	43890646	43890646	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_004924	exon6	c.G622A	p.E208K	.	.	.
SIRT2	22933	hgsc.bcm.edu	36	19	44076326	44076326	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_012237	exon3	c.G85A	p.G29R	.	.	.
SUPT5H	6829	hgsc.bcm.edu	36	19	44655532	44655532	+	Silent	SNP	C	C	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001111020	exon23	c.C2196A	p.A732A	.	.	.
CCDC8	83987	hgsc.bcm.edu	36	19	51606999	51606999	+	Silent	SNP	T	T	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_032040	exon1	c.A909G	p.Q303Q	.	.	.
SIGLEC9	27180	hgsc.bcm.edu	36	19	56324962	56324962	+	Silent	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_014441	exon7	c.G1206A	p.G402G	.	.	.
ZNF304	57343	hgsc.bcm.edu	36	19	62560438	62560438	+	Silent	SNP	T	T	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_020657	exon3	c.T1389G	p.V463V	.	.	.
KCND3	3752	hgsc.bcm.edu	36	1	112326644	112326644	+	Silent	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_172198	exon2	c.C228T	p.N76N	.	.	.
NRAS	4893	hgsc.bcm.edu	36	1	115060271	115060271	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_002524	exon2	c.G34T	p.G12C	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1	.	.
TARS2	80222	hgsc.bcm.edu	36	1	148729763	148729763	+	Silent	SNP	T	T	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_025150	exon4	c.T450G	p.V150V	.	.	.
ARHGEF2	9181	hgsc.bcm.edu	36	1	154201437	154201437	+	Silent	SNP	T	T	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001162383	exon7	c.A690G	p.K230K	.	.	.
IQGAP3	128239	hgsc.bcm.edu	36	1	154770468	154770468	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_178229	exon30	c.C3830A	p.P1277H	.	.	.
CD1B	910	hgsc.bcm.edu	36	1	156566450	156566450	+	Silent	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001764	exon3	c.C423T	p.F141F	.	.	.
IGSF9	57549	hgsc.bcm.edu	36	1	158163835	158163835	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_020789	exon21	c.G3416A	p.R1139H	.	.	.
PPOX	5498	hgsc.bcm.edu	36	1	159404516	159404516	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001122764	exon5	c.T446G	p.F149C	.	.	.
C1orf96	126731	hgsc.bcm.edu	36	1	227529122	227529122	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_145257	exon3	c.G622C	p.A208P	.	.	.
RPS6KA1	6195	hgsc.bcm.edu	36	1	26770586	26770586	+	Silent	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_002953	exon18	c.C1650T	p.P550P	.	.	.
AJAP1	55966	hgsc.bcm.edu	36	1	4732223	4732223	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001042478	exon4	c.G941A	p.R314H	.	.	.
LHX8	431707	hgsc.bcm.edu	36	1	75382182	75382182	+	Silent	SNP	A	A	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001001933	exon7	c.A675G	p.A225A	.	.	.
TTLL7	79739	hgsc.bcm.edu	36	1	84167495	84167495	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_024686	exon10	c.C1054T	p.R352X	.	.	.
SSX2IP	117178	hgsc.bcm.edu	36	1	84902754	84902754	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001166293	exon6	c.C607T	p.R203C	.	.	.
RNF182	221687	hgsc.bcm.edu	36	6	14085999	14085999	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_152737	exon3	c.G670A	p.V224I	.	.	.
PLEKHG1	57480	hgsc.bcm.edu	36	6	151194436	151194436	+	Silent	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001029884	exon16	c.C2496T	p.S832S	.	.	.
EHMT2	10919	hgsc.bcm.edu	36	6	31959660	31959660	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_006709	exon22	c.G2818A	p.G940S	.	.	.
SLC22A23	63027	hgsc.bcm.edu	36	6	3269067	3269067	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_021945	exon5	c.C239T	p.S80L	.	.	.
UBR2	23304	hgsc.bcm.edu	36	6	42692983	42692983	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_015255	exon11	c.A1210G	p.M404V	.	.	.
CUL9	23113	hgsc.bcm.edu	36	6	43274392	43274392	+	Silent	SNP	G	G	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_015089	exon12	c.G2871T	p.G957G	.	.	.
RRAGD	58528	hgsc.bcm.edu	36	6	90138880	90138880	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_021244	exon6	c.G1046T	p.R349I	.	.	.
C6orf167	253714	hgsc.bcm.edu	36	6	97716628	97716628	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_198468	exon22	c.A3356G	p.K1119R	.	.	.
PIH1D2	120379	hgsc.bcm.edu	36	11	111447062	111447062	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001082619	exon4	c.T457C	p.F153L	.	.	.
HSD17B12	51144	hgsc.bcm.edu	36	11	43659082	43659082	+	Silent	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_016142	exon1	c.G129A	p.A43A	.	.	.
OR9G4	283189	hgsc.bcm.edu	36	11	56267713	56267713	+	Silent	SNP	A	A	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001005284	exon1	c.T151C	p.L51L	.	.	.
APLNR	187	hgsc.bcm.edu	36	11	56760920	56760920	+	Silent	SNP	G	G	T	rs948847	by2Hit2Allele;byCluster;byFrequency;byHapMap;byOtherPop	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_005161	exon1	c.C135A	p.G45G	.	.	.
RELT	84957	hgsc.bcm.edu	36	11	72782993	72782993	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_152222	exon8	c.C771A	p.S257R	.	.	.
PIGS	94005	hgsc.bcm.edu	36	17	23907988	23907988	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_033198	exon9	c.G1064A	p.R355H	.	.	.
ACACA	31	hgsc.bcm.edu	36	17	32623209	32623209	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_198839	exon41	c.A4240C	p.T1414P	.	.	.
KRT28	162605	hgsc.bcm.edu	36	17	36208120	36208120	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_181535	exon3	c.G583A	p.G195R	.	.	.
SLC35B1	10237	hgsc.bcm.edu	36	17	45140135	45140135	+	Silent	SNP	A	A	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_005827	exon1	c.T60C	p.G20G	.	.	.
SPAG9	9043	hgsc.bcm.edu	36	17	46426277	46426277	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_003971	exon18	c.A2203G	p.K735E	.	.	.
TNFSF12	8742	hgsc.bcm.edu	36	17	7401241	7401241	+	Silent	SNP	G	G	C	rs3803798	byCluster;byFrequency	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_003809	exon7	c.G600C	p.A200A	.	.	.
ODF4	146852	hgsc.bcm.edu	36	17	8184114	8184114	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_153007	exon1	c.G20A	p.G7E	.	.	.
PRSS7	5651	hgsc.bcm.edu	36	21	18620749	18620749	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_002772	exon16	c.G1792T	p.G598W	.	.	.
DNAH3	55567	hgsc.bcm.edu	36	16	21064810	21064810	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_017539	exon2	c.A218T	p.Y73F	.	.	.
USP31	57478	hgsc.bcm.edu	36	16	22987608	22987608	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_020718	exon16	c.G3319A	p.V1107M	.	.	.
ZNF500	26048	hgsc.bcm.edu	36	16	4752666	4752666	+	Silent	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_021646	exon3	c.C507T	p.S169S	.	.	.
RBL2	5934	hgsc.bcm.edu	36	16	52081630	52081630	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_005611	exon22	c.C3337T	p.P1113S	.	.	.
IRX6	79190	hgsc.bcm.edu	36	16	53919193	53919193	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_024335	exon4	c.G608A	p.R203H	.	.	.
GNAO1	2775	hgsc.bcm.edu	36	16	54867373	54867373	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_020988	exon3	c.A191C	p.E64A	.	.	.
NRN1L	123904	hgsc.bcm.edu	36	16	66477484	66477484	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_198443	exon3	c.C319T	p.R107C	.	.	.
EMILIN2	84034	hgsc.bcm.edu	36	18	2881917	2881917	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_032048	exon4	c.G1792A	p.E598K	.	.	.
SMAD4	4089	hgsc.bcm.edu	36	18	46845917	46845917	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_005359	exon9	c.G1082A	p.R361H	SMAD4,small_intestine,duodenum,Substitution - Missense,+1	.	.
RABL3	285282	hgsc.bcm.edu	36	3	121907601	121907601	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_173825	exon4	c.C319T	p.R107C	.	.	.
MRPL3	11222	hgsc.bcm.edu	36	3	132699716	132699716	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_007208	exon4	c.T465G	p.F155L	.	.	.
TGFBR2	7048	hgsc.bcm.edu	36	3	30707984	30707984	+	Silent	SNP	C	C	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001024847	exon8	c.C1668A	p.A556A	.	.	.
SCN10A	6336	hgsc.bcm.edu	36	3	38738835	38738835	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_006514	exon19	c.G3425A	p.R1142H	.	.	.
GORASP1	64689	hgsc.bcm.edu	36	3	39117359	39117359	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_031899	exon5	c.T449C	p.F150S	.	.	.
ATRIP	84126	hgsc.bcm.edu	36	3	48466487	48466487	+	Silent	SNP	A	A	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_032166	exon2	c.A288G	p.K96K	.	.	.
CADM2	253559	hgsc.bcm.edu	36	3	85933948	85933948	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001167674	exon2	c.T123G	p.I41M	.	.	.
KCNA1	3736	hgsc.bcm.edu	36	12	4891409	4891409	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_000217	exon2	c.G604A	p.V202I	.	.	.
PDE1B	5153	hgsc.bcm.edu	36	12	53253422	53253422	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001165975	exon8	c.G793A	p.V265M	.	.	.
RAB5B	5869	hgsc.bcm.edu	36	12	54670736	54670736	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_002868	exon4	c.A319T	p.T107S	.	.	.
ATP5B	506	hgsc.bcm.edu	36	12	55319270	55319270	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001686	exon9	c.A1376C	p.K459T	.	.	.
GNB3	2784	hgsc.bcm.edu	36	12	6822422	6822422	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_002075	exon5	c.C124T	p.R42X	.	.	.
PCTK2	5128	hgsc.bcm.edu	36	12	95252741	95252741	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_002595	exon2	c.A5G	p.K2R	.	.	.
ATP10A	57194	hgsc.bcm.edu	36	15	23477297	23477297	+	Silent	SNP	C	C	G	rs2076741	by2Hit2Allele;byCluster;byFrequency;byHapMap	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_024490	exon18	c.G3510C	p.T1170T	.	.	.
BMF	90427	hgsc.bcm.edu	36	15	38185511	38185511	+	Silent	SNP	C	C	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001003940	exon3	c.G69T	p.V23V	.	.	.
IGDCC4	57722	hgsc.bcm.edu	36	15	63474533	63474533	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_020962	exon8	c.G1528T	p.G510X	.	.	.
IREB2	3658	hgsc.bcm.edu	36	15	76519271	76519271	+	Silent	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_004136	exon2	c.C99T	p.T33T	.	.	.
ALDH1A3	220	hgsc.bcm.edu	36	15	99258311	99258311	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_000693	exon9	c.G892T	p.A298S	.	.	.
GLUD2	2747	hgsc.bcm.edu	36	X	120010801	120010801	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_012084	exon1	c.T1582C	p.Y528H	.	.	.
SLC9A6	10479	hgsc.bcm.edu	36	X	134954535	134954535	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001177651	exon17	c.C1936T	p.H646Y	.	.	.
CNKSR2	22866	hgsc.bcm.edu	36	X	21302957	21302957	+	Silent	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001168648	exon1	c.G21A	p.P7P	.	.	.
WDR42B	139425	hgsc.bcm.edu	36	X	27907883	27907883	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001017930	exon1	c.C1490T	p.A497V	.	.	.
SMC1A	8243	hgsc.bcm.edu	36	X	53453114	53453114	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_006306	exon8	c.C1300T	p.R434W	.	.	.
CYLC1	1538	hgsc.bcm.edu	36	X	83015638	83015638	+	Silent	SNP	A	A	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_021118	exon4	c.A1266G	p.E422E	.	.	.
FAT4	79633	hgsc.bcm.edu	36	4	126592832	126592832	+	Silent	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_024582	exon9	c.C11211T	p.A3737A	.	.	.
SETD7	80854	hgsc.bcm.edu	36	4	140658535	140658535	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_030648	exon7	c.G874T	p.G292X	.	.	.
ARFIP1	27236	hgsc.bcm.edu	36	4	154011410	154011410	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001025595	exon4	c.T258A	p.S86R	.	.	.
HAND2	9464	hgsc.bcm.edu	36	4	174686649	174686649	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_021973	exon1	c.C367T	p.R123C	.	.	.
SLC34A2	10568	hgsc.bcm.edu	36	4	25287188	25287188	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001177998	exon13	c.C1789T	p.R597C	.	.	.
UBA6	55236	hgsc.bcm.edu	36	4	68173407	68173407	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_018227	exon29	c.A2612C	p.K871T	.	.	.
ADAMTS3	9508	hgsc.bcm.edu	36	4	73395680	73395680	+	Silent	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_014243	exon14	c.G2004A	p.T668T	.	.	.
SAP130	79595	hgsc.bcm.edu	36	2	128467269	128467269	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_024545	exon12	c.C1517T	p.P506L	.	.	.
UPP2	151531	hgsc.bcm.edu	36	2	158688541	158688541	+	Silent	SNP	T	T	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_173355	exon6	c.T699C	p.F233F	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179339478	179339478	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_133437	exon40	c.G9440A	p.R3147Q	.	.	.
ALS2CR11	151254	hgsc.bcm.edu	36	2	202120564	202120564	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001168221	exon10	c.A992G	p.K331R	.	.	.
TMEM169	92691	hgsc.bcm.edu	36	2	216669129	216669129	+	Silent	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001142312	exon2	c.C198T	p.P66P	.	.	.
SMARCAL1	50485	hgsc.bcm.edu	36	2	216993372	216993372	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001127207	exon5	c.C968T	p.P323L	.	.	.
ADD2	119	hgsc.bcm.edu	36	2	70744276	70744276	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001185054	exon16	c.C1970T	p.T657M	.	.	.
CIZ1	25792	hgsc.bcm.edu	36	9	129978481	129978481	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001131015	exon12	c.T1745C	p.V582A	.	.	.
LAMC3	10319	hgsc.bcm.edu	36	9	132952995	132952995	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_006059	exon27	c.G4447A	p.E1483K	.	.	.
GTF3C4	9329	hgsc.bcm.edu	36	9	134544387	134544387	+	Silent	SNP	G	G	A	rs371169	by2Hit2Allele;byCluster;byFrequency;byHapMap	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_012204	exon2	c.G1560A	p.E520E	.	.	.
C9orf98	158067	hgsc.bcm.edu	36	9	134657901	134657901	+	Silent	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_152572	exon11	c.C1062T	p.G354G	.	.	.
BNC2	54796	hgsc.bcm.edu	36	9	16409123	16409123	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_017637	exon7	c.A3164C	p.K1055T	.	.	.
ZNF169	169841	hgsc.bcm.edu	36	9	96103032	96103032	+	Silent	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_194320	exon5	c.C1371T	p.P457P	.	.	.
CORO2A	7464	hgsc.bcm.edu	36	9	99926879	99926879	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_003389	exon12	c.T1576A	p.X526R	.	.	.
NALCN	259232	hgsc.bcm.edu	36	13	100708859	100708859	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_052867	exon11	c.C1202T	p.A401V	.	.	.
GPC5	2262	hgsc.bcm.edu	36	13	91595186	91595186	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_004466	exon7	c.G1504A	p.D502N	.	.	.
HS6ST3	266722	hgsc.bcm.edu	36	13	96282801	96282801	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_153456	exon2	c.G764A	p.W255X	.	.	.
SEMA4G	57715	hgsc.bcm.edu	36	10	102728133	102728133	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_017893	exon5	c.T527G	p.I176S	.	.	.
SUFU	51684	hgsc.bcm.edu	36	10	104367111	104367111	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_016169	exon10	c.C1232T	p.T411M	.	.	.
GSTO1	9446	hgsc.bcm.edu	36	10	106017026	106017026	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_004832	exon6	c.A599C	p.K200T	.	.	.
ACSL5	51703	hgsc.bcm.edu	36	10	114144757	114144757	+	Silent	SNP	G	G	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_203379	exon2	c.G63C	p.L21L	.	.	.
CUBN	8029	hgsc.bcm.edu	36	10	16972423	16972423	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001081	exon55	c.A8708C	p.Q2903P	.	.	.
CREM	1390	hgsc.bcm.edu	36	10	35540198	35540198	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_182721	exon3	c.C205T	p.R69W	.	.	.
CTNND2	1501	hgsc.bcm.edu	36	5	11076012	11076012	+	Silent	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001332	exon17	c.G2868A	p.S956S	.	.	.
APC	324	hgsc.bcm.edu	36	5	112192485	112192485	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_000038	exon14	c.C1660T	p.R554X	APC,ovary,NS,Substitution - Nonsense,0	.	.
APC	324	hgsc.bcm.edu	36	5	112203322	112203322	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_000038	exon16	c.C4132T	p.Q1378X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.
TCF7	6932	hgsc.bcm.edu	36	5	133506608	133506608	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_201634	exon7	c.A599T	p.Q200L	.	.	.
CCDC99	54908	hgsc.bcm.edu	36	5	168948043	168948043	+	Silent	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_017785	exon2	c.G45A	p.E15E	.	.	.
DOCK2	1794	hgsc.bcm.edu	36	5	169061886	169061886	+	Silent	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_004946	exon14	c.G1260A	p.G420G	.	.	.
FBXW11	23291	hgsc.bcm.edu	36	5	171235910	171235910	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_012300	exon8	c.G1142A	p.G381D	.	.	.
LIFR	3977	hgsc.bcm.edu	36	5	38538573	38538573	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_002310	exon11	c.G1523A	p.R508Q	.	.	.
MGC42105	167359	hgsc.bcm.edu	36	5	43316157	43316157	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_153361	exon4	c.G880A	p.V294M	.	.	.
DDX4	54514	hgsc.bcm.edu	36	5	55119451	55119451	+	Silent	SNP	T	T	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001166533	exon14	c.T978A	p.I326I	.	.	.
CD180	4064	hgsc.bcm.edu	36	5	66515744	66515744	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_005582	exon3	c.A683C	p.N228T	.	.	.
NRXN3	9369	hgsc.bcm.edu	36	14	78339714	78339714	+	Splice_Site	SNP	A	A	G	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	.	.	.	.	.	.	.
PLA2G4A	5321	hgsc.bcm.edu	36	1	185191856	185191856	+	Splice_Site	SNP	G	G	C	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	.	.	.	.	.	.	.
TASP1	55617	hgsc.bcm.edu	36	20	13462769	13462769	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017714	exon9	c.T695A	p.L232X	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152807331	152807331	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033071	exon30	c.A3766C	p.I1256L	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0	.	.
ZCWPW2	152098	hgsc.bcm.edu	36	3	28451702	28451702	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001040432	exon3	c.G430A	p.D144N	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.