Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
TRPV5	56302	hgsc.bcm.edu	36	7	142316803	142316803	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_019841	exon14	c.G1870A	p.G624R	.	.	.
GLI3	2737	hgsc.bcm.edu	36	7	41970567	41970567	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000168	exon15	c.G4629A	p.A1543A	.	.	.
MYLK2	85366	hgsc.bcm.edu	36	20	29885211	29885211	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033118	exon13	c.C1741T	p.R581C	.	.	.
KIAA1409	57578	hgsc.bcm.edu	36	14	93189861	93189861	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020818	exon37	c.C5690T	p.A1897V	.	.	.
ZNF317	57693	hgsc.bcm.edu	36	19	9130565	9130565	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001190791	exon5	c.C353T	p.T118M	.	.	.
AQP10	89872	hgsc.bcm.edu	36	1	152562123	152562123	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_080429	exon3	c.G274A	p.V92I	.	.	.
FCRL3	115352	hgsc.bcm.edu	36	1	155926782	155926782	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_052939	exon9	c.G1577A	p.G526E	.	.	.
TNR	7143	hgsc.bcm.edu	36	1	173565887	173565887	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003285	exon21	c.G3739A	p.E1247K	.	.	.
MR1	3140	hgsc.bcm.edu	36	1	179288106	179288106	+	Silent	SNP	C	C	T	rs35223984	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001531	exon5	c.C717T	p.N239N	.	.	.
PIK3C2B	5287	hgsc.bcm.edu	36	1	202704628	202704628	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002646	exon3	c.C926T	p.A309V	.	.	.
ZNF669	79862	hgsc.bcm.edu	36	1	245330801	245330801	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024804	exon4	c.G893T	p.R298L	.	.	.
TINAGL1	64129	hgsc.bcm.edu	36	1	31823084	31823084	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022164	exon7	c.C717T	p.S239S	.	.	.
ZYG11B	79699	hgsc.bcm.edu	36	1	53054792	53054792	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024646	exon13	c.G1947A	p.R649R	.	.	.
ZZZ3	26009	hgsc.bcm.edu	36	1	77870617	77870617	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015534	exon5	c.C1011T	p.N337N	.	.	.
SLC2A5	6518	hgsc.bcm.edu	36	1	9021101	9021101	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003039	exon10	c.G1150A	p.V384I	.	.	.
ZNF202	7753	hgsc.bcm.edu	36	11	123106580	123106580	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003455	exon4	c.G227T	p.R76I	.	.	.
BRPF3	27154	hgsc.bcm.edu	36	6	36293723	36293723	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015695	exon9	c.G3041A	p.C1014Y	.	.	.
NFE2L1	4779	hgsc.bcm.edu	36	17	43491900	43491900	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003204	exon6	c.G2217C	p.A739A	.	.	.
STRADA	92335	hgsc.bcm.edu	36	17	59144616	59144616	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001165969	exon4	c.A143G	p.K48R	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon8	c.G818A	p.R273H	TP53,central_nervous_system,brain,Substitution - Missense,-1	.	.
A2BP1	54715	hgsc.bcm.edu	36	16	7569799	7569799	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_145893	exon3	c.C350T	p.P117L	.	.	.
PTPRM	5797	hgsc.bcm.edu	36	18	8374678	8374678	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002845	exon28	c.C3999T	p.A1333A	.	.	.
SCN10A	6336	hgsc.bcm.edu	36	3	38745146	38745146	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006514	exon15	c.G2531A	p.R844H	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G34C	p.G12R	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1	.	.
PGBD4	161779	hgsc.bcm.edu	36	15	32182197	32182197	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152595	exon1	c.A173T	p.E58V	.	.	.
RASGRF1	5923	hgsc.bcm.edu	36	15	77041615	77041615	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002891	exon28	c.G3748A	p.D1250N	.	.	.
IL16	3603	hgsc.bcm.edu	36	15	79379008	79379008	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001172128	exon14	c.C2286A	p.D762E	.	.	.
IDH2	3418	hgsc.bcm.edu	36	15	88432841	88432841	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002168	exon4	c.G516C	p.R172S	IDH2,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-1	.	.
SLC28A1	9154	hgsc.bcm.edu	36	15	83239336	83239336	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_201651	exon6	c.C439T	p.R147C	.	.	.
ELF2	1998	hgsc.bcm.edu	36	4	140202471	140202471	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006874	exon5	c.G624A	p.L208L	.	.	.
P2RY10	27334	hgsc.bcm.edu	36	X	78103255	78103255	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198333	exon2	c.G582A	p.A194A	.	.	.
SCN3A	6328	hgsc.bcm.edu	36	2	165702801	165702801	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006922	exon15	c.G2225T	p.C742F	.	.	.
APOB	338	hgsc.bcm.edu	36	2	21081676	21081676	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000384	exon26	c.G11569A	p.V3857M	.	.	.
GPR75	10936	hgsc.bcm.edu	36	2	53934981	53934981	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006794	exon2	c.C417T	p.I139I	.	.	.
PALM2	114299	hgsc.bcm.edu	36	9	111745184	111745184	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001037293	exon7	c.C798T	p.S266S	.	.	.
TNC	3371	hgsc.bcm.edu	36	9	116859340	116859340	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002160	exon15	c.C4492A	p.L1498I	.	.	.
SETX	23064	hgsc.bcm.edu	36	9	134193851	134193851	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015046	exon10	c.G2955A	p.S985S	.	.	.
CTSL2	1515	hgsc.bcm.edu	36	9	98835082	98835082	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001333	exon8	c.C975T	p.I325I	.	.	.
ZC3H13	23091	hgsc.bcm.edu	36	13	45447498	45447498	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015070	exon12	c.C2389T	p.R797X	.	.	.
APC	324	hgsc.bcm.edu	36	5	112201995	112201995	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C2751A	p.Y917X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.
MCC	4163	hgsc.bcm.edu	36	5	112486313	112486313	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001085377	exon6	c.G994A	p.E332K	.	.	.
FBN2	2201	hgsc.bcm.edu	36	5	127627123	127627123	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001999	exon63	c.C8085T	p.D2695D	.	.	.
GRIA1	2890	hgsc.bcm.edu	36	5	153046070	153046070	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114183	exon8	c.C1122T	p.D374D	.	.	.
MAP1B	4131	hgsc.bcm.edu	36	5	71530782	71530782	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005909	exon5	c.G5844A	p.R1948R	.	.	.