Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PIK3CG	5294	hgsc.bcm.edu	36	7	106300401	106300401	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002649	exon4	c.G2069T	p.R690I	.	.	.
DYNC1H1	1778	hgsc.bcm.edu	36	14	101569428	101569428	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001376	exon54	c.G10267A	p.A3423T	.	.	.
TMC4	147798	hgsc.bcm.edu	36	19	59355879	59355879	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145303	exon15	c.G2115T	p.L705L	.	.	.
SLA	6503	hgsc.bcm.edu	36	8	134131351	134131351	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001045556	exon5	c.T226C	p.C76R	.	.	.
PLAT	5327	hgsc.bcm.edu	36	8	42164683	42164683	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033011	exon4	c.G124A	p.E42K	.	.	.
SLCO5A1	81796	hgsc.bcm.edu	36	8	70754264	70754264	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_030958	exon8	c.C1927T	p.R643W	.	.	.
WDR21C	138009	hgsc.bcm.edu	36	8	88954979	88954979	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152418	exon1	c.C337T	p.R113W	.	.	.
RUNX1T1	862	hgsc.bcm.edu	36	8	93052130	93052130	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001198626	exon12	c.G1471A	p.A491T	.	.	.
ANKRD35	148741	hgsc.bcm.edu	36	1	144272276	144272276	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_144698	exon9	c.C776T	p.A259V	.	.	.
SLAMF8	56833	hgsc.bcm.edu	36	1	158066391	158066391	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020125	exon2	c.G152A	p.R51Q	.	.	.
FAM5C	339479	hgsc.bcm.edu	36	1	188500804	188500804	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_199051	exon4	c.G432T	p.E144D	.	.	.
OR52H1	390067	hgsc.bcm.edu	36	11	5523295	5523295	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001005289	exon1	c.T35C	p.L12P	.	.	.
LPXN	9404	hgsc.bcm.edu	36	11	58051645	58051645	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001143995	exon9	c.G1034C	p.C345S	.	.	.
ALDH3B2	222	hgsc.bcm.edu	36	11	67187349	67187349	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000695	exon10	c.A1071C	p.L357F	.	.	.
AGPAT4	56895	hgsc.bcm.edu	36	6	161507379	161507379	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020133	exon3	c.G239A	p.R80H	.	.	.
C6orf129	154467	hgsc.bcm.edu	36	6	37560613	37560613	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138493	exon3	c.G141A	p.R47R	.	.	.
NLRP1	22861	hgsc.bcm.edu	36	17	5380896	5380896	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014922	exon8	c.C2959T	p.R987W	.	.	.
MCM3AP	8888	hgsc.bcm.edu	36	21	46529543	46529543	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003906	exon1	c.C86T	p.P29L	.	.	.
HS3ST2	9956	hgsc.bcm.edu	36	16	22833813	22833813	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006043	exon2	c.C533T	p.T178M	.	.	.
IL21R	50615	hgsc.bcm.edu	36	16	27361858	27361858	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_181079	exon6	c.G493A	p.E165K	.	.	.
ABCC12	94160	hgsc.bcm.edu	36	16	46735462	46735462	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033226	exon2	c.G135A	p.P45P	.	.	.
HRH4	59340	hgsc.bcm.edu	36	18	20311128	20311128	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001143828	exon2	c.C513T	p.L171L	.	.	.
SLC9A10	285335	hgsc.bcm.edu	36	3	113356547	113356547	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_183061	exon27	c.G3404T	p.R1135I	.	.	.
SEMA5B	54437	hgsc.bcm.edu	36	3	124130571	124130571	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001031702	exon6	c.G499A	p.D167N	.	.	.
C3orf20	84077	hgsc.bcm.edu	36	3	14745156	14745156	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001184958	exon12	c.C1531T	p.R511W	.	.	.
ZIC1	7545	hgsc.bcm.edu	36	3	148613899	148613899	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003412	exon3	c.G1215A	p.T405T	.	.	.
SLITRK3	22865	hgsc.bcm.edu	36	3	166389581	166389581	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014926	exon2	c.G1732A	p.E578K	.	.	.
PLCL2	23228	hgsc.bcm.edu	36	3	17026493	17026493	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144382	exon3	c.G632A	p.R211H	.	.	.
CTNNB1	1499	hgsc.bcm.edu	36	3	41242190	41242190	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001098210	exon6	c.C770T	p.T257I	.	.	.
CTNNB1	1499	hgsc.bcm.edu	36	3	41249915	41249915	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001098210	exon8	c.T1161G	p.N387K	.	.	.
PLEKHA5	54477	hgsc.bcm.edu	36	12	19313991	19313991	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_019012	exon9	c.G732A	p.R244R	.	.	.
SFRS2IP	9169	hgsc.bcm.edu	36	12	44607683	44607683	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004719	exon11	c.G2068A	p.E690K	.	.	.
NEDD1	121441	hgsc.bcm.edu	36	12	95852892	95852892	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152905	exon7	c.G497A	p.R166Q	.	.	.
LIMCH1	22998	hgsc.bcm.edu	36	4	41302707	41302707	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001112717	exon6	c.A415T	p.S139C	.	.	.
EVC2	132884	hgsc.bcm.edu	36	4	5738000	5738000	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001166136	exon6	c.C574T	p.R192W	.	.	.
YTHDC1	91746	hgsc.bcm.edu	36	4	68878315	68878315	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001031732	exon9	c.G1349A	p.R450K	.	.	.
SLC25A14	9016	hgsc.bcm.edu	36	X	129302000	129302000	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003951	exon1	c.G67T	p.V23L	.	.	.
GAB3	139716	hgsc.bcm.edu	36	X	153581498	153581498	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001081573	exon5	c.G1100A	p.R367Q	.	.	.
FAM47B	170062	hgsc.bcm.edu	36	X	34871188	34871188	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152631	exon1	c.C319A	p.L107I	.	.	.
MED14	9282	hgsc.bcm.edu	36	X	40407122	40407122	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004229	exon26	c.C3683T	p.T1228M	.	.	.
NDUFB11	54539	hgsc.bcm.edu	36	X	46886762	46886762	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019056	exon3	c.C390T	p.R130R	.	.	.
WDR45	11152	hgsc.bcm.edu	36	X	48820052	48820052	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001029896	exon9	c.G742T	p.D248Y	.	.	.
POU3F4	5456	hgsc.bcm.edu	36	X	82650746	82650746	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000307	exon1	c.A758G	p.N253S	.	.	.
HDX	139324	hgsc.bcm.edu	36	X	83610194	83610194	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001177479	exon4	c.C1193A	p.S398Y	.	.	.
PABPC5	140886	hgsc.bcm.edu	36	X	90577280	90577280	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_080832	exon2	c.C48G	p.L16L	.	.	.
RHBDD1	84236	hgsc.bcm.edu	36	2	227440245	227440245	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001167608	exon5	c.T533G	p.V178G	.	.	.
TMEM178	130733	hgsc.bcm.edu	36	2	39784776	39784776	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152390	exon2	c.G452A	p.R151H	.	.	.
CCDC88A	55704	hgsc.bcm.edu	36	2	55443029	55443029	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135597	exon7	c.G546A	p.S182S	.	.	.
CLEC4F	165530	hgsc.bcm.edu	36	2	70897623	70897623	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173535	exon4	c.C398T	p.S133L	.	.	.
COL15A1	1306	hgsc.bcm.edu	36	9	100817570	100817570	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001855	exon10	c.G1404T	p.V468V	.	.	.
CEP110	11064	hgsc.bcm.edu	36	9	122944352	122944352	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007018	exon17	c.C2854T	p.R952X	.	.	.
VAV2	7410	hgsc.bcm.edu	36	9	135626941	135626941	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001134398	exon26	c.G2184T	p.W728C	.	.	.
ZCCHC6	79670	hgsc.bcm.edu	36	9	88127674	88127674	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_024617	exon13	c.A2811T	p.K937N	.	.	.
SEMA4D	10507	hgsc.bcm.edu	36	9	91193409	91193409	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001142287	exon13	c.C1069T	p.R357C	.	.	.
ITGBL1	9358	hgsc.bcm.edu	36	13	101165976	101165976	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004791	exon11	c.G1456A	p.E486K	.	.	.
PCDH9	5101	hgsc.bcm.edu	36	13	66698218	66698218	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020403	exon2	c.G2356T	p.D786Y	.	.	.
ABCC4	10257	hgsc.bcm.edu	36	13	94656881	94656881	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001105515	exon8	c.C1067A	p.T356K	.	.	.
CUTC	51076	hgsc.bcm.edu	36	10	101505465	101505465	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015960	exon9	c.C801T	p.I267I	.	.	.
ADAM12	8038	hgsc.bcm.edu	36	10	127796746	127796746	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021641	exon6	c.G463C	p.E155Q	.	.	.
SVIL	6840	hgsc.bcm.edu	36	10	29879615	29879615	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003174	exon8	c.C744T	p.H248H	.	.	.
DNAH5	1767	hgsc.bcm.edu	36	5	13954560	13954560	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001369	exon14	c.G1853A	p.R618Q	.	.	.
PCDHB5	26167	hgsc.bcm.edu	36	5	140496083	140496083	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015669	exon1	c.G883A	p.E295K	.	.	.
PDGFRB	5159	hgsc.bcm.edu	36	5	149495425	149495425	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002609	exon3	c.G250A	p.V84M	.	.	.
CDH9	1007	hgsc.bcm.edu	36	5	26921662	26921662	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_016279	exon11	c.C1700T	p.P567L	.	.	.
VCAN	1462	hgsc.bcm.edu	36	5	82852614	82852614	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3534-01A-01W-0831-10	TCGA-AA-3534-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001164098	exon7	c.C2733G	p.S911R	.	.	.