Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
NUP205	23165	hgsc.bcm.edu	36	7	134942566	134942566	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015135	exon22	c.C3102T	p.H1034H	.	.	.
ATRN	8455	hgsc.bcm.edu	36	20	3475991	3475991	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_139322	exon5	c.C798T	p.S266S	.	.	.
CD22	933	hgsc.bcm.edu	36	19	40523796	40523796	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001185100	exon7	c.C1422T	p.N474N	.	.	.
PSG8	440533	hgsc.bcm.edu	36	19	47961557	47961557	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001130168	exon1	c.C17T	p.A6V	.	.	.
PNMAL1	55228	hgsc.bcm.edu	36	19	51665011	51665011	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018215	exon2	c.C1122T	p.Y374Y	.	.	.
DLC1	10395	hgsc.bcm.edu	36	8	12996677	12996677	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_182643	exon12	c.C3488T	p.T1163M	.	.	.
COL22A1	169044	hgsc.bcm.edu	36	8	139902622	139902622	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152888	exon7	c.A1184T	p.N395I	.	.	.
OPRK1	4986	hgsc.bcm.edu	36	8	54310053	54310053	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000912	exon3	c.C429A	p.F143L	.	.	.
UBXN10	127733	hgsc.bcm.edu	36	1	20390038	20390038	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152376	exon2	c.G397A	p.V133I	.	.	.
LPPR4	9890	hgsc.bcm.edu	36	1	99539094	99539094	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014839	exon5	c.C776T	p.A259V	.	.	.
OR8B8	26493	hgsc.bcm.edu	36	11	123816167	123816167	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012378	exon1	c.G25A	p.V9M	.	.	.
ANO3	63982	hgsc.bcm.edu	36	11	26486343	26486343	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_031418	exon5	c.T549G	p.F183L	.	.	.
OR51G2	81282	hgsc.bcm.edu	36	11	4892570	4892570	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001005238	exon1	c.G900T	p.K300N	.	.	.
OR5T2	219464	hgsc.bcm.edu	36	11	55757067	55757067	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001004746	exon1	c.A171C	p.T57T	.	.	.
TUB	7275	hgsc.bcm.edu	36	11	8078714	8078714	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_177972	exon10	c.G1205A	p.R402H	.	.	.
SLC35D3	340146	hgsc.bcm.edu	36	6	137285370	137285370	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008783	exon1	c.G111T	p.Q37H	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152694409	152694409	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033071	exon77	c.C12891T	p.A4297A	.	.	.
ACOT13	55856	hgsc.bcm.edu	36	6	24809773	24809773	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001160094	exon4	c.C305G	p.T102R	.	.	.
MUC21	394263	hgsc.bcm.edu	36	6	31063197	31063197	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010909	exon2	c.T1266C	p.N422N	.	.	.
DNAH8	1769	hgsc.bcm.edu	36	6	38993088	38993088	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001371	exon67	c.A9585G	p.Q3195Q	.	.	.
CRYBA1	1411	hgsc.bcm.edu	36	17	24605367	24605367	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005208	exon6	c.T522C	p.P174P	.	.	.
GRN	2896	hgsc.bcm.edu	36	17	39783160	39783160	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002087	exon5	c.C388T	p.Q130X	.	.	.
CANT1	124583	hgsc.bcm.edu	36	17	74501293	74501293	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001159773	exon5	c.C1140T	p.D380D	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518273	7518273	+	Missense_Mutation	SNP	C	C	T	rs28934575	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon7	c.G733A	p.G245S	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.
RHO	6010	hgsc.bcm.edu	36	3	130734174	130734174	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000539	exon4	c.G805A	p.A269T	.	.	.
CPB1	1360	hgsc.bcm.edu	36	3	150060408	150060408	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001871	exon11	c.C1183T	p.R395W	.	.	.
RTP1	132112	hgsc.bcm.edu	36	3	188400419	188400419	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153708	exon2	c.C659T	p.A220V	.	.	.
PAH	5053	hgsc.bcm.edu	36	12	101830765	101830765	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000277	exon2	c.C102A	p.A34A	.	.	.
NR4A1	3164	hgsc.bcm.edu	36	12	50736147	50736147	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002135	exon4	c.C943T	p.R315W	.	.	.
ERBB3	2065	hgsc.bcm.edu	36	12	54768873	54768873	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001982	exon9	c.A1063G	p.T355A	.	.	.
RAB3IP	117177	hgsc.bcm.edu	36	12	68480288	68480288	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_175624	exon7	c.G921A	p.L307L	.	.	.
IREB2	3658	hgsc.bcm.edu	36	15	76545760	76545760	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004136	exon5	c.G503T	p.C168F	.	.	.
FAT4	79633	hgsc.bcm.edu	36	4	126590539	126590539	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024582	exon9	c.T8918G	p.I2973R	.	.	.
CORIN	10699	hgsc.bcm.edu	36	4	47358520	47358520	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006587	exon12	c.A1700G	p.N567S	.	.	.
EPHA5	2044	hgsc.bcm.edu	36	4	65968806	65968806	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004439	exon6	c.C1475G	p.P492R	.	.	.
COL4A5	1287	hgsc.bcm.edu	36	X	107714375	107714375	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000495	exon18	c.A996C	p.Q332H	.	.	.
MAGEE2	139599	hgsc.bcm.edu	36	X	74921045	74921045	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138703	exon1	c.G567C	p.L189F	.	.	.
ZNF804A	91752	hgsc.bcm.edu	36	2	185509111	185509111	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_194250	exon4	c.G743T	p.R248I	.	.	.
COL6A3	1293	hgsc.bcm.edu	36	2	237924567	237924567	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_057166	exon24	c.G4940T	p.G1647V	.	.	.
POMC	5443	hgsc.bcm.edu	36	2	25237565	25237565	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001035256	exon4	c.G693A	p.P231P	.	.	.
GPR113	165082	hgsc.bcm.edu	36	2	26390906	26390906	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001145169	exon6	c.C805T	p.R269X	.	.	.
GNLY	10578	hgsc.bcm.edu	36	2	85775081	85775081	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006433	exon1	c.C29A	p.A10E	.	.	.
CEP110	11064	hgsc.bcm.edu	36	9	122960120	122960120	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007018	exon28	c.G4676A	p.R1559H	.	.	.
RORB	6096	hgsc.bcm.edu	36	9	76447394	76447394	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006914	exon4	c.C480T	p.S160S	.	.	.
SLITRK5	26050	hgsc.bcm.edu	36	13	87128283	87128283	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015567	exon2	c.T2639G	p.F880C	.	.	.
SORCS3	22986	hgsc.bcm.edu	36	10	106906989	106906989	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014978	exon10	c.C1586A	p.A529D	.	.	.
EPC1	80314	hgsc.bcm.edu	36	10	32602145	32602145	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_025209	exon11	c.A1815G	p.Q605Q	.	.	.
RHOBTB1	9886	hgsc.bcm.edu	36	10	62318041	62318041	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014836	exon6	c.C1391T	p.T464M	.	.	.
APC	324	hgsc.bcm.edu	36	5	112156042	112156042	+	Nonsense_Mutation	SNP	C	C	T	rs62619935	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127510	exon8	c.C646T	p.R216X	.	.	.
APC	324	hgsc.bcm.edu	36	5	112203106	112203106	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.G3862T	p.E1288X	APC,pancreas,NS,Substitution - Missense,0	.	.
PCDHB2	56133	hgsc.bcm.edu	36	5	140455613	140455613	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018936	exon1	c.C1055T	p.S352L	.	.	.
PCDHB7	56129	hgsc.bcm.edu	36	5	140533113	140533113	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018940	exon1	c.C513A	p.T171T	.	.	.
PCDHB7	56129	hgsc.bcm.edu	36	5	140533972	140533972	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018940	exon1	c.C1372T	p.L458L	.	.	.
VCAN	1462	hgsc.bcm.edu	36	5	82871043	82871043	+	Nonsense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001164097	exon7	c.T3504G	p.Y1168X	.	.	.