Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
DNAJC6	9829	hgsc.bcm.edu	36	1	65631102	65631103	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014787	exon12	c.1698_1699insA	p.S566fs	.	.	.
BCLAF1	9774	hgsc.bcm.edu	36	6	136641602	136641603	+	Frame_Shift_Ins	INS	-	-	TG	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_014739	exon4	c.110_111insCA	p.R37fs	.	.	.
CLECL1	160365	hgsc.bcm.edu	36	12	9776974	9776975	+	Frame_Shift_Ins	INS	-	-	TAAGT	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172004	exon1	c.154_155insACTTA	p.S52fs	.	.	.
CCDC6	8030	hgsc.bcm.edu	36	10	61262330	61262331	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005436	exon3	c.541_542insA	p.L181fs	.	.	.
ANKHD1-EIF4EBP3	404734	hgsc.bcm.edu	36	5	139856916	139856917	+	Frame_Shift_Ins	INS	-	-	GAACT	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_017747	exon15	c.2873_2874insGAACT	p.Q958fs	.	.	.
IGFBP3	3486	hgsc.bcm.edu	36	7	45923521	45923521	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_000598	exon2	c.T446A	p.V149E	.	.	.
LIMK1	3984	hgsc.bcm.edu	36	7	73163962	73163962	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002314	exon11	c.G1333A	p.A445T	.	.	.
CALCR	799	hgsc.bcm.edu	36	7	92946683	92946683	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001742	exon4	c.G124A	p.V42I	.	.	.
PPP1R9A	55607	hgsc.bcm.edu	36	7	94693308	94693308	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001166163	exon6	c.G1990T	p.D664Y	.	.	.
C20orf94	128710	hgsc.bcm.edu	36	20	10551342	10551342	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001009608	exon8	c.G542C	p.S181T	.	.	.
C20orf94	128710	hgsc.bcm.edu	36	20	10551345	10551345	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001009608	exon8	c.A545C	p.K182T	.	.	.
C20orf94	128710	hgsc.bcm.edu	36	20	10551521	10551521	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001009608	exon8	c.G721A	p.E241K	.	.	.
CDC25B	994	hgsc.bcm.edu	36	20	3730577	3730577	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004358	exon10	c.G886A	p.V296I	.	.	.
TOX2	84969	hgsc.bcm.edu	36	20	42128858	42128858	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032883	exon9	c.C1305T	p.S435S	.	.	.
BMP7	655	hgsc.bcm.edu	36	20	55181667	55181667	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001719	exon6	c.C1142T	p.T381M	.	.	.
RAB2B	84932	hgsc.bcm.edu	36	14	21001742	21001742	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001163380	exon5	c.G249A	p.V83V	.	.	.
ABHD4	63874	hgsc.bcm.edu	36	14	22148535	22148535	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022060	exon6	c.G818A	p.R273Q	.	.	.
C14orf21	161424	hgsc.bcm.edu	36	14	23842807	23842807	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_174913	exon7	c.G1314A	p.R438R	.	.	.
WDR22	8816	hgsc.bcm.edu	36	14	68590366	68590366	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003861	exon9	c.T2790C	p.D930D	.	.	.
NRXN3	9369	hgsc.bcm.edu	36	14	78245619	78245619	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004796	exon4	c.G409A	p.V137M	.	.	.
MKL1	57591	hgsc.bcm.edu	36	22	39146817	39146819	+	In_Frame_Del	DEL	GGC	GGC	-	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	GGC	GGC	GGC	GGC	GGC	GGC	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_020831	exon10	c.859_861del	p.287_287del	.	.	.
ANKRD27	84079	hgsc.bcm.edu	36	19	37808627	37808627	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_032139	exon17	c.A1622T	p.H541L	.	.	.
FPR2	2358	hgsc.bcm.edu	36	19	56964091	56964091	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001462	exon2	c.G368A	p.R123H	.	.	.
PPP2R1A	5518	hgsc.bcm.edu	36	19	57407794	57407794	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014225	exon5	c.C547T	p.R183W	.	.	.
PRKCG	5582	hgsc.bcm.edu	36	19	59095769	59095769	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002739	exon14	c.C1529T	p.T510M	.	.	.
PPP1R12C	54776	hgsc.bcm.edu	36	19	60299466	60299466	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017607	exon7	c.C1001T	p.A334V	.	.	.
UBE2M	9040	hgsc.bcm.edu	36	19	63760260	63760260	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003969	exon2	c.G186C	p.L62L	.	.	.
RNF139	11236	hgsc.bcm.edu	36	8	125568686	125568686	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007218	exon2	c.C1615T	p.R539C	.	.	.
FAM110B	90362	hgsc.bcm.edu	36	8	59221954	59221954	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_147189	exon5	c.G611A	p.R204H	.	.	.
RHOC	389	hgsc.bcm.edu	36	1	113045819	113045819	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175744	exon6	c.C448T	p.R150W	.	.	.
DENND2C	163259	hgsc.bcm.edu	36	1	114969770	114969770	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198459	exon2	c.G359A	p.R120Q	.	.	.
AMPD1	270	hgsc.bcm.edu	36	1	115018987	115018987	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000036	exon13	c.G1808A	p.R603Q	.	.	.
PRDM2	7799	hgsc.bcm.edu	36	1	13978061	13978061	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001007257	exon3	c.G581A	p.C194Y	.	.	.
KIF21B	23046	hgsc.bcm.edu	36	1	199234294	199234294	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_017596	exon14	c.A1918C	p.T640P	.	.	.
LYST	1130	hgsc.bcm.edu	36	1	234040182	234040182	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000081	exon5	c.C559A	p.L187M	.	.	.
NID1	4811	hgsc.bcm.edu	36	1	234211664	234211664	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002508	exon16	c.C3097T	p.R1033C	.	.	.
OR2T11	127077	hgsc.bcm.edu	36	1	246856362	246856362	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001964	exon1	c.C691T	p.R231C	.	.	.
SRRM1	10250	hgsc.bcm.edu	36	1	24865925	24865925	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005839	exon13	c.C1661A	p.P554H	.	.	.
ARID1A	8289	hgsc.bcm.edu	36	1	26978140	26978140	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006015	exon20	c.C5164T	p.R1722X	.	.	.
ITGB3BP	23421	hgsc.bcm.edu	36	1	63693154	63693154	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014288	exon5	c.A328G	p.I110V	.	.	.
TTLL7	79739	hgsc.bcm.edu	36	1	84128628	84128628	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024686	exon19	c.G2333A	p.R778H	.	.	.
ROR1	4919	hgsc.bcm.edu	36	1	64416011	64416011	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_005012	exon9	c.A1699T	p.R567X	ROR1,large_intestine,NS,Substitution - Missense,-1	.	.
SIDT2	51092	hgsc.bcm.edu	36	11	116567816	116567816	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040455	exon19	c.T1748G	p.M583R	.	.	.
NCAPD3	23310	hgsc.bcm.edu	36	11	133585465	133585465	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015261	exon4	c.G476A	p.R159Q	.	.	.
NADSYN1	55191	hgsc.bcm.edu	36	11	70870646	70870646	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018161	exon13	c.G1077T	p.G359G	.	.	.
ME3	10873	hgsc.bcm.edu	36	11	85838641	85838641	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001161586	exon10	c.G1069T	p.V357L	.	.	.
SKIV2L	6499	hgsc.bcm.edu	36	6	32040025	32040025	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006929	exon17	c.G1898T	p.G633V	.	.	.
GSTA1	2938	hgsc.bcm.edu	36	6	52766966	52766966	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145740	exon5	c.C330T	p.P110P	.	.	.
MYH2	4620	hgsc.bcm.edu	36	17	10383363	10383363	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001100112	exon14	c.G1300A	p.V434I	.	.	.
SCO1	6341	hgsc.bcm.edu	36	17	10536898	10536898	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004589	exon3	c.G470T	p.G157V	.	.	.
C17orf39	79018	hgsc.bcm.edu	36	17	17902970	17902970	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024052	exon4	c.G670T	p.E224X	.	.	.
SLC47A2	146802	hgsc.bcm.edu	36	17	19522743	19522743	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001099646	exon17	c.T1549A	p.F517I	.	.	.
KCNJ12	3768	hgsc.bcm.edu	36	17	21259541	21259541	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021012	exon3	c.C294T	p.F98F	.	.	.
SLFN11	91607	hgsc.bcm.edu	36	17	30704073	30704073	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001104589	exon6	c.C2121A	p.T707T	.	.	.
KCNH4	23415	hgsc.bcm.edu	36	17	37567855	37567855	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012285	exon15	c.C2595A	p.P865P	.	.	.
STAT3	6774	hgsc.bcm.edu	36	17	37752249	37752249	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_213662	exon3	c.C137T	p.A46V	.	.	.
CNTNAP1	8506	hgsc.bcm.edu	36	17	38099076	38099076	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_003632	exon18	c.C2988G	p.N996K	.	.	.
CDC27	996	hgsc.bcm.edu	36	17	42571161	42571161	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001114091	exon13	c.T1665G	p.D555E	CDC27,lung,NS,Substitution - Missense,0	.	.
MARCH10	162333	hgsc.bcm.edu	36	17	58156100	58156100	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001100875	exon7	c.T2035C	p.C679R	.	.	.
KCNH6	81033	hgsc.bcm.edu	36	17	58967068	58967068	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_030779	exon6	c.A1408T	p.T470S	.	.	.
CDH8	1006	hgsc.bcm.edu	36	16	60412444	60412444	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001796	exon6	c.G910T	p.D304Y	.	.	.
GAS8	2622	hgsc.bcm.edu	36	16	88630293	88630293	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001481	exon6	c.T554C	p.I185T	.	.	.
A4GNT	51146	hgsc.bcm.edu	36	3	139326020	139326020	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	C	A	C	A	Unknown	Valid	Germline	Phase_I	Capture	454			SOLID	NM_016161	exon3	c.G799T	p.E267X	.	.	.
ETV5	2119	hgsc.bcm.edu	36	3	187252598	187252598	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004454	exon12	c.G1226T	p.G409V	.	.	.
LRRC15	131578	hgsc.bcm.edu	36	3	195561769	195561769	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130830	exon2	c.G1299A	p.P433P	.	.	.
TGFBR2	7048	hgsc.bcm.edu	36	3	30690628	30690628	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003242	exon5	c.G1282A	p.E428K	.	.	.
ADAMTS9	56999	hgsc.bcm.edu	36	3	64592629	64592629	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_182920	exon15	c.G2188A	p.D730N	.	.	.
FICD	11153	hgsc.bcm.edu	36	12	107437128	107437128	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_007076	exon3	c.C1123G	p.L375V	.	.	.
ACACB	32	hgsc.bcm.edu	36	12	108168401	108168401	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001093	exon38	c.C5336G	p.T1779S	.	.	.
ZNF605	90462	hgsc.bcm.edu	36	12	132012795	132012795	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_183238	exon5	c.C1163A	p.T388K	.	.	.
TULP3	7289	hgsc.bcm.edu	36	12	2917652	2917652	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160408	exon10	c.T1135C	p.F379L	.	.	.
CPNE8	144402	hgsc.bcm.edu	36	12	37410379	37410379	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153634	exon11	c.A771G	p.R257R	.	.	.
MBD6	114785	hgsc.bcm.edu	36	12	56205159	56205159	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_052897	exon5	c.T373G	p.S125A	.	.	.
ACACB	32	hgsc.bcm.edu	36	12	108168393	108168396	+	Frame_Shift_Del	DEL	GTTT	GTTT	-	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	GTTT	GTTT	GTTT	GTTT	GTTT	GTTT	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001093	exon38	c.5328_5331del	p.1776_1777del	.	.	.
ANKDD1A	348094	hgsc.bcm.edu	36	15	63023940	63023940	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_182703	exon12	c.C1104G	p.N368K	.	.	.
SLC10A7	84068	hgsc.bcm.edu	36	4	147644509	147644509	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001029998	exon4	c.G338T	p.C113F	.	.	.
GLA	2717	hgsc.bcm.edu	36	X	100542344	100542344	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000169	exon4	c.G605A	p.C202Y	.	.	.
ESX1	80712	hgsc.bcm.edu	36	X	103385868	103385868	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153448	exon2	c.C129T	p.D43D	.	.	.
WDR40B	139170	hgsc.bcm.edu	36	X	125512994	125512994	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178470	exon1	c.T1279A	p.F427I	.	.	.
VGLL1	51442	hgsc.bcm.edu	36	X	135458719	135458719	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016267	exon3	c.C520A	p.Q174K	.	.	.
GAB3	139716	hgsc.bcm.edu	36	X	153580766	153580766	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001081573	exon6	c.A1342T	p.K448X	.	.	.
BEND2	139105	hgsc.bcm.edu	36	X	18140682	18140682	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153346	exon4	c.C416A	p.P139Q	.	.	.
FAM133A	286499	hgsc.bcm.edu	36	X	92851413	92851413	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001171110	exon5	c.T339C	p.S113S	.	.	.
RTN4	57142	hgsc.bcm.edu	36	2	55107163	55107163	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020532	exon3	c.G1576T	p.E526X	.	.	.
ALK	238	hgsc.bcm.edu	36	2	29297202	29297202	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004304	exon23	c.A3519G	p.K1173K	.	.	.
FAM154A	158297	hgsc.bcm.edu	36	9	18918984	18918984	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153707	exon4	c.C491G	p.S164X	.	.	.
POSTN	10631	hgsc.bcm.edu	36	13	37062529	37062529	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135934	exon4	c.G421C	p.A141P	.	.	.
GBF1	8729	hgsc.bcm.edu	36	10	104126843	104126843	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199378	exon33	c.G4450T	p.V1484L	.	.	.
SLC16A9	220963	hgsc.bcm.edu	36	10	61093998	61093998	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_194298	exon4	c.T429G	p.I143M	.	.	.
MEGF10	84466	hgsc.bcm.edu	36	5	126812775	126812775	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032446	exon23	c.C2942T	p.P981L	.	.	.
FBN2	2201	hgsc.bcm.edu	36	5	127627070	127627070	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001999	exon63	c.C8138T	p.T2713M	.	.	.
DDX46	9879	hgsc.bcm.edu	36	5	134130583	134130583	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014829	exon3	c.G284A	p.S95N	.	.	.
ANKHD1-EIF4EBP3	404734	hgsc.bcm.edu	36	5	139856543	139856543	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_017747	exon15	c.A2500G	p.I834V	.	.	.
PCDHAC1	56135	hgsc.bcm.edu	36	5	140288995	140288995	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031882	exon1	c.C2334T	p.A778A	.	.	.
PCDHB1	29930	hgsc.bcm.edu	36	5	140413027	140413027	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013340	exon1	c.C1788T	p.D596D	.	.	.
AFAP1L1	134265	hgsc.bcm.edu	36	5	148676043	148676043	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152406	exon11	c.G1251A	p.E417E	.	.	.
AFAP1L1	134265	hgsc.bcm.edu	36	5	148676047	148676047	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152406	exon11	c.G1255A	p.V419I	.	.	.
DUSP1	1843	hgsc.bcm.edu	36	5	172128621	172128621	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004417	exon4	c.T854A	p.F285Y	.	.	.
CDH18	1016	hgsc.bcm.edu	36	5	19757228	19757228	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004934	exon5	c.G628A	p.V210I	.	.	.