Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
C10orf96	374355	broad.mit.edu	36	10	118074578	118074578	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198515	exon2	c.G65A	p.R22H	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26283910	26283910	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017433	exon4	c.A270C	p.K90N	.	.	.
PTCHD3	374308	broad.mit.edu	36	10	27742356	27742356	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001034842	exon1	c.C830T	p.T277M	.	.	.
TUBAL3	79861	broad.mit.edu	36	10	5427414	5427414	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024803	exon3	c.G272A	p.R91H	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55252216	55252216	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001142767	exon31	c.C5156A	p.P1719H	.	.	.
CDHR1	92211	broad.mit.edu	36	10	85946279	85946279	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001171971	exon3	c.G190A	p.G64R	.	.	.
CYP2C9	1559	broad.mit.edu	36	10	96691676	96691676	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000771	exon2	c.T240C	p.Y80Y	.	.	.
PGR	5241	broad.mit.edu	36	11	100438616	100438616	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000926	exon4	c.G1984A	p.V662I	.	.	.
ANGPTL5	253935	broad.mit.edu	36	11	101278617	101278617	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178127	exon6	c.A485T	p.K162I	.	.	.
KIRREL3	84623	broad.mit.edu	36	11	125838298	125838298	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032531	exon6	c.G706A	p.G236R	.	.	.
NAV2	89797	broad.mit.edu	36	11	20023191	20023191	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001111018	exon14	c.G3109A	p.E1037K	.	.	.
PSMC3	5702	broad.mit.edu	36	11	47402795	47402795	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002804	exon4	c.A329G	p.N110S	.	.	.
OR4X1	390113	broad.mit.edu	36	11	48242636	48242636	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004726	exon1	c.C648T	p.Y216Y	.	.	.
ATG2A	23130	broad.mit.edu	36	11	64433138	64433138	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015104	exon16	c.G2265A	p.K755K	.	.	.
SYTL2	54843	broad.mit.edu	36	11	85113237	85113237	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_206927	exon1	c.C1911T	p.F637F	.	.	.
RPSAP52	204010	broad.mit.edu	36	12	64438353	64438354	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PRB2	653247	broad.mit.edu	36	12	11437334	11437334	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006248	exon3	c.T945C	p.P315P	.	.	.
MLXIP	22877	broad.mit.edu	36	12	121177802	121177802	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014938	exon2	c.G459A	p.K153K	.	.	.
MPHOSPH9	10198	broad.mit.edu	36	12	122248793	122248793	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022782	exon8	c.G1523A	p.R508H	.	.	.
DNM1L	10059	broad.mit.edu	36	12	32762889	32762889	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012062	exon7	c.C665T	p.A222V	.	.	.
OR6C68	403284	broad.mit.edu	36	12	54173006	54173006	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005519	exon1	c.T593C	p.I198T	.	.	.
SLC39A5	283375	broad.mit.edu	36	12	54911575	54911575	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135195	exon2	c.C250T	p.R84W	.	.	.
GPR182	11318	broad.mit.edu	36	12	55675393	55675393	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007264	exon2	c.G133A	p.V45M	.	.	.
NALCN	259232	broad.mit.edu	36	13	100534064	100534064	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052867	exon31	c.G3582A	p.P1194P	.	.	.
SPG20	23111	broad.mit.edu	36	13	35784325	35784325	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001142295	exon8	c.G1690A	p.V564I	.	.	.
SCEL	8796	broad.mit.edu	36	13	77114851	77114851	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001160706	exon30	c.T1831A	p.C611S	.	.	.
EDNRB	1910	broad.mit.edu	36	13	77372663	77372663	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001122659	exon5	c.T1079G	p.L360R	.	.	.
GPC6	10082	broad.mit.edu	36	13	93756356	93756356	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005708	exon6	c.C1130A	p.A377E	.	.	.
NOVA1	4857	broad.mit.edu	36	14	26019048	26019048	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002515	exon3	c.C422T	p.T141I	.	.	.
PYGL	5836	broad.mit.edu	36	14	50449530	50449530	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002863	exon13	c.T1587C	p.D529D	.	.	.
BTBD7	55727	broad.mit.edu	36	14	92778941	92778941	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001002860	exon11	c.G2830T	p.D944Y	.	.	.
GABRB3	2562	broad.mit.edu	36	15	24344321	24344321	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021912	exon9	c.G1134A	p.M378I	.	.	.
GABRG3	2567	broad.mit.edu	36	15	25451378	25451378	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033223	exon10	c.C1160T	p.A387V	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52092633	52092633	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080534	exon1	c.G241A	p.E81K	.	.	.
CILP	8483	broad.mit.edu	36	15	63278211	63278211	+	Missense_Mutation	SNP	C	T	T	rs60521346	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003613	exon9	c.G1466A	p.R489Q	.	.	.
WHAMM	123720	broad.mit.edu	36	15	81299272	81299272	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080435	exon10	c.G2360A	p.R787K	.	.	.
HS3ST4	9951	broad.mit.edu	36	16	26055037	26055037	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006040	exon2	c.T1338G	p.D446E	.	.	.
DECR2	26063	broad.mit.edu	36	16	395024	395024	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020664	exon2	c.C148T	p.R50W	.	.	.
MYO1D	4642	broad.mit.edu	36	17	28005073	28005073	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015194	exon19	c.A2496G	p.P832P	.	.	.
SLFN13	146857	broad.mit.edu	36	17	30793065	30793065	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144682	exon5	c.A1552T	p.S518C	.	.	.
TBC1D3C	414060	broad.mit.edu	36	17	31877502	31877502	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001418	exon7	c.C430T	p.R144C	.	.	.
MARCH10	162333	broad.mit.edu	36	17	58168045	58168045	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001100875	exon6	c.C916T	p.R306C	.	.	.
SEC14L1	6397	broad.mit.edu	36	17	72702418	72702418	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001039573	exon7	c.G539A	p.R180H	.	.	.
TP53	7157	broad.mit.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon7	c.C742T	p.R248W	 TP53,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,+1 	.	.
CCDC137	339230	broad.mit.edu	36	17	77250088	77250088	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199287	exon6	c.C819T	p.H273H	.	.	.
TCEB3B	51224	broad.mit.edu	36	18	42813499	42813499	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016427	exon1	c.C2135T	p.P712L	.	.	.
CPAMD8	27151	broad.mit.edu	36	19	16965237	16965237	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015692	exon12	c.G1396A	p.V466M	.	.	.
ZNF570	148268	broad.mit.edu	36	19	42667257	42667257	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144694	exon5	c.G893A	p.G298E	.	.	.
PSG9	5678	broad.mit.edu	36	19	48454386	48454386	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002784	exon5	c.G1051A	p.D351N	.	.	.
FUT1	2523	broad.mit.edu	36	19	53945712	53945712	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000148	exon4	c.C639T	p.T213T	.	.	.
ZNF649	65251	broad.mit.edu	36	19	57095170	57095170	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_023074	exon2	c.G3A	p.M1I	.	.	.
ZNF808	388558	broad.mit.edu	36	19	57749999	57749999	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001039886	exon5	c.A2018T	p.H673L	.	.	.
ZNF559	84527	broad.mit.edu	36	19	9313459	9313459	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032497	exon6	c.G332C	p.R111T	.	.	.
FCRLA	84824	broad.mit.edu	36	1	159948553	159948553	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001184870	exon3	c.C354T	p.S118S	.	.	.
ARHGEF10L	55160	broad.mit.edu	36	1	17825041	17825041	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018125	exon14	c.C1321T	p.R441W	.	.	.
RGS18	64407	broad.mit.edu	36	1	190394504	190394504	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_130782	exon1	c.A114C	p.K38N	.	.	.
PPFIA4	8497	broad.mit.edu	36	1	201304336	201304336	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015053	exon14	c.A1763G	p.N588S	.	.	.
CNTN2	6900	broad.mit.edu	36	1	203301562	203301562	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005076	exon14	c.C1718A	p.T573N	.	.	.
OR2M5	127059	broad.mit.edu	36	1	246375622	246375622	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004690	exon1	c.C550T	p.L184L	.	.	.
KPNA6	23633	broad.mit.edu	36	1	32392857	32392857	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012316	exon2	c.G86A	p.R29Q	.	.	.
RLF	6018	broad.mit.edu	36	1	40477159	40477159	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012421	exon8	c.G4198A	p.E1400K	.	.	.
GLIS1	148979	broad.mit.edu	36	1	53832494	53832494	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_147193	exon3	c.C670A	p.R224S	.	.	.
NBPF11	200030	broad.mit.edu	36	1	146713251	146713251	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ZBTB46	140685	broad.mit.edu	36	20	61892074	61892074	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025224	exon2	c.G481A	p.V161M	.	.	.
SFRS15	57466	broad.mit.edu	36	21	31995269	31995269	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145444	exon6	c.T642C	p.A214A	.	.	.
RRP1B	23076	broad.mit.edu	36	21	43937538	43937538	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015056	exon16	c.C2123T	p.T708M	.	.	.
MCM6	4175	broad.mit.edu	36	2	136318659	136318659	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005915	exon16	c.G2275C	p.E759Q	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140966684	140966684	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018557	exon57	c.T9083G	p.I3028S	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144873672	144873672	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001171653	exon7	c.C1480T	p.H494Y	.	.	.
NEB	4703	broad.mit.edu	36	2	152141054	152141054	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164507	exon106	c.C16765T	p.P5589S	.	.	.
SCN7A	6332	broad.mit.edu	36	2	167042306	167042306	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002976	exon2	c.G147T	p.K49N	.	.	.
FASTKD1	79675	broad.mit.edu	36	2	170136513	170136513	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024622	exon2	c.T273C	p.Y91Y	.	.	.
ZNF385B	151126	broad.mit.edu	36	2	180016228	180016228	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001113397	exon8	c.G1182A	p.P394P	.	.	.
FN1	2335	broad.mit.edu	36	2	215970795	215970795	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_212476	exon22	c.G3370A	p.G1124R	.	.	.
TMEM198	130612	broad.mit.edu	36	2	220120590	220120590	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005209	exon3	c.C285T	p.S95S	.	.	.
CUL3	8452	broad.mit.edu	36	2	225073337	225073337	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003590	exon11	c.G1597C	p.E533Q	.	.	.
HK2	3099	broad.mit.edu	36	2	74971526	74971526	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000189	exon18	c.G2704A	p.A902T	.	.	.
ASTL	431705	broad.mit.edu	36	2	96153659	96153659	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001002036	exon9	c.C953T	p.A318V	.	.	.
KALRN	8997	broad.mit.edu	36	3	125535814	125535814	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003947	exon9	c.G1423A	p.G475S	.	.	.
SI	6476	broad.mit.edu	36	3	166179873	166179873	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001041	exon48	c.G5455T	p.E1819X	.	.	.
GOLIM4	27333	broad.mit.edu	36	3	169233304	169233304	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014498	exon9	c.C874T	p.H292Y	.	.	.
OR5K3	403277	broad.mit.edu	36	3	99592699	99592699	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005516	exon1	c.C500A	p.T167N	.	.	.
MUC20	200958	broad.mit.edu	36	3	196938689	196938689	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001098516	exon2	c.926delC	p.A309fs	.	.	.
TRPC3	7222	broad.mit.edu	36	4	123045062	123045062	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003305	exon7	c.C1899T	p.S633S	.	.	.
SFRP2	6423	broad.mit.edu	36	4	154922070	154922070	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003013	exon3	c.C871T	p.R291C	.	.	.
NEK1	4750	broad.mit.edu	36	4	170760321	170760321	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199400	exon2	c.A36G	p.E12E	.	.	.
AFAP1	60312	broad.mit.edu	36	4	7871755	7871755	+	Nonsense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001134647	exon7	c.C770G	p.S257X	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79578791	79578791	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025074	exon39	c.A5261G	p.Y1754C	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13770570	13770570	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001369	exon73	c.G12559A	p.A4187T	.	.	.
ZNF354C	30832	broad.mit.edu	36	5	178436748	178436748	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014594	exon4	c.A225T	p.R75S	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23563133	23563133	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020227	exon11	c.C2179T	p.R727W	.	.	.
C5orf39	389289	broad.mit.edu	36	5	43075360	43075360	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001014279	exon1	c.G546A	p.A182A	.	.	.
APC	324	broad.mit.edu	36	5	112203102	112203102	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.3858delA	p.I1286fs	.	.	.
REV3L	5980	broad.mit.edu	36	6	111800580	111800580	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002912	exon13	c.A5671G	p.M1891V	.	.	.
TRDN	10345	broad.mit.edu	36	6	123933858	123933858	+	Silent	SNP	A	C	C	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006073	exon2	c.T141G	p.P47P	.	.	.
RNF182	221687	broad.mit.edu	36	6	14085522	14085522	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001165032	exon4	c.C193T	p.P65S	.	.	.
KIF25	3834	broad.mit.edu	36	6	168183643	168183643	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030615	exon6	c.C544T	p.Q182X	.	.	.
ZNF184	7738	broad.mit.edu	36	6	27528450	27528450	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007149	exon6	c.G867C	p.E289D	.	.	.
SCAND3	114821	broad.mit.edu	36	6	28650994	28650994	+	Silent	SNP	A	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052923	exon3	c.T1467A	p.T489T	.	.	.
TNXB	7148	broad.mit.edu	36	6	32138069	32138069	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019105	exon20	c.C7011A	p.Y2337X	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38927382	38927382	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001371	exon37	c.T4769G	p.V1590G	.	.	.
DST	667	broad.mit.edu	36	6	56470246	56470246	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015548	exon63	c.G12244A	p.E4082K	.	.	.
C6orf221	154288	broad.mit.edu	36	6	74129595	74129595	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001017361	exon2	c.G226A	p.V76M	.	.	.
IRAK1BP1	134728	broad.mit.edu	36	6	79634253	79634253	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010844	exon1	c.G241C	p.A81P	.	.	.
C6orf167	253714	broad.mit.edu	36	6	97809204	97809204	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198468	exon10	c.C1069T	p.H357Y	.	.	.
INTS1	26173	broad.mit.edu	36	7	1493600	1493601	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080453	exon20	c.2528_2529insC	p.R843fs	.	.	.
METTL2B	55798	broad.mit.edu	36	7	127906615	127906616	+	Missense_Mutation	DNP	TG	CC	CC	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018396	exon3	c.370_371CC	.	.	.	.
TRIL	9865	broad.mit.edu	36	7	28964011	28964011	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014817	exon1	c.C177T	p.H59H	.	.	.
SLC25A13	10165	broad.mit.edu	36	7	95652195	95652195	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014251	exon10	c.G998A	p.G333D	.	.	.
PRSS55	203074	broad.mit.edu	36	8	10426371	10426371	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001197020	exon3	c.C504T	p.L168L	.	.	.
RIMS2	9699	broad.mit.edu	36	8	104967272	104967272	+	Silent	SNP	T	G	G	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100117	exon4	c.T1269G	p.S423S	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139233250	139233250	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015912	exon13	c.C2650T	p.R884C	.	.	.
ANK1	286	broad.mit.edu	36	8	41665230	41665230	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020475	exon34	c.C4139T	p.T1380M	.	.	.
WWP1	11059	broad.mit.edu	36	8	87492988	87492988	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007013	exon9	c.C830A	p.T277N	.	.	.
INVS	27130	broad.mit.edu	36	9	102094528	102094528	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_183245	exon14	c.A2168G	p.E723G	.	.	.
REXO4	57109	broad.mit.edu	36	9	135267853	135267853	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020385	exon3	c.C582T	p.I194I	.	.	.
OBP2A	29991	broad.mit.edu	36	9	137578882	137578882	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014582	exon3	c.C244T	p.R82W	.	.	.
SEC16A	9919	broad.mit.edu	36	9	138491198	138491198	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014866	exon3	c.C691A	p.P231T	.	.	.
FRMPD1	22844	broad.mit.edu	36	9	37730726	37730726	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014907	exon15	c.C2201T	p.P734L	.	.	.
NTRK2	4915	broad.mit.edu	36	9	86739004	86739004	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006180	exon17	c.G1741A	p.D581N	.	.	.
AFF2	2334	broad.mit.edu	36	X	147551245	147551245	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002025	exon3	c.T305G	p.V102G	.	.	.
CACNA1F	778	broad.mit.edu	36	X	48950156	48950156	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005183	exon45	c.G5369A	p.R1790H	.	.	.
PFKFB1	5207	broad.mit.edu	36	X	55006516	55006516	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002625	exon2	c.C122T	p.S41F	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91018632	91018632	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032968	exon2	c.A737G	p.H246R	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91020514	91020514	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032968	exon2	c.G2619A	p.K873K	.	.	.