Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
HK1	3098	broad.mit.edu	36	10	70812356	70812356	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033498	exon13	c.C1385T	p.A462V	.	.	.
NDST2	8509	broad.mit.edu	36	10	75236089	75236089	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003635	exon6	c.C1398T	p.A466A	.	.	.
MRVI1	10335	broad.mit.edu	36	11	10572281	10572281	+	Silent	SNP	G	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100163	exon16	c.C1782A	p.L594L	.	.	.
NPAT	4863	broad.mit.edu	36	11	107537028	107537028	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002519	exon17	c.C3995G	p.A1332G	.	.	.
TRIM68	55128	broad.mit.edu	36	11	4578925	4578925	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018073	exon6	c.C815T	p.S272F	.	.	.
OR52E4	390081	broad.mit.edu	36	11	5862405	5862405	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005165	exon1	c.A307G	p.M103V	.	.	.
SF3B2	10992	broad.mit.edu	36	11	65583621	65583621	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006842	exon12	c.C1380T	p.F460F	.	.	.
LRP1	4035	broad.mit.edu	36	12	55875818	55875819	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002332	exon53	c.8548_8549insC	p.S2850fs	.	.	.
ACVR1B	91	broad.mit.edu	36	12	50656507	50656507	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020327	exon3	c.G305A	p.R102H	.	.	.
FRY	10129	broad.mit.edu	36	13	31696430	31696430	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_023037	exon37	c.G4824A	p.P1608P	.	.	.
FREM2	341640	broad.mit.edu	36	13	38333628	38333628	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207361	exon15	c.G7580A	p.R2527H	.	.	.
PPP1R13B	23368	broad.mit.edu	36	14	103282574	103282574	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015316	exon9	c.G1039T	p.G347W	.	.	.
OR4K1	79544	broad.mit.edu	36	14	19473861	19473861	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004063	exon1	c.C196G	p.L66V	.	.	.
METTL3	56339	broad.mit.edu	36	14	21041538	21041538	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019852	exon3	c.A341G	p.D114G	.	.	.
SSTR1	6751	broad.mit.edu	36	14	37749383	37749383	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001049	exon3	c.C1038T	p.A346A	.	.	.
MEGF11	84465	broad.mit.edu	36	15	64173839	64173839	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032445	exon5	c.A349C	p.T117P	.	.	.
LAT	27040	broad.mit.edu	36	16	28905468	28905468	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014387	exon6	c.G417A	p.S139S	.	.	.
DYNC1LI2	1783	broad.mit.edu	36	16	65325640	65325640	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006141	exon6	c.C775T	p.R259W	.	.	.
DPEP2	64174	broad.mit.edu	36	16	66580800	66580800	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022355	exon9	c.C997T	p.H333Y	.	.	.
NLK	51701	broad.mit.edu	36	17	23473791	23473791	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016231	exon2	c.C494T	p.A165V	.	.	.
ACACA	31	broad.mit.edu	36	17	32561239	32561239	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198834	exon46	c.T5698C	p.Y1900H	.	.	.
BRIP1	83990	broad.mit.edu	36	17	57115839	57115839	+	Nonsense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032043	exon20	c.C3350G	p.S1117X	.	.	.
MRC2	9902	broad.mit.edu	36	17	58112188	58112188	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006039	exon18	c.G2668C	p.G890R	.	.	.
TP53	7157	broad.mit.edu	36	17	7518298	7518298	+	Nonsense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001126114	exon7	c.C708G	p.Y236X	 TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-1 	.	.
LAMA3	3909	broad.mit.edu	36	18	19766241	19766241	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127718	exon28	c.T3701C	p.V1234A	.	.	.
ALPK2	115701	broad.mit.edu	36	18	54335300	54335300	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052947	exon9	c.G5760A	p.T1920T	.	.	.
TNFRSF11A	8792	broad.mit.edu	36	18	58178205	58178205	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003839	exon6	c.A559G	p.T187A	.	.	.
C19orf62	29086	broad.mit.edu	36	19	17248313	17248313	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001033549	exon7	c.A579C	p.K193N	.	.	.
TLE2	7089	broad.mit.edu	36	19	2970712	2970712	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144762	exon6	c.G189A	p.L63L	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45060684	45060684	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003890	exon28	c.C12504T	p.S4168S	.	.	.
STRN4	29888	broad.mit.edu	36	19	51915800	51915800	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001039877	exon17	c.C2182T	p.R728C	.	.	.
FCER2	2208	broad.mit.edu	36	19	7660294	7660294	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002002	exon11	c.A751C	p.T251P	.	.	.
UBL4B	164153	broad.mit.edu	36	1	110456789	110456789	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_203412	exon1	c.C110A	p.P37H	.	.	.
ADORA3	140	broad.mit.edu	36	1	111830737	111830737	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001081976	exon4	c.G623T	p.R208L	.	.	.
GATAD2B	57459	broad.mit.edu	36	1	152058747	152058747	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020699	exon3	c.A424T	p.M142L	.	.	.
ILDR2	387597	broad.mit.edu	36	1	165158515	165158515	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199351	exon8	c.G1150A	p.A384T	.	.	.
STX6	10228	broad.mit.edu	36	1	179238459	179238459	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005819	exon3	c.G206A	p.S69N	.	.	.
FAM129A	116496	broad.mit.edu	36	1	183031694	183031694	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052966	exon14	c.G1827A	p.L609L	.	.	.
RYR2	6262	broad.mit.edu	36	1	235820755	235820755	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001035	exon31	c.T4000A	p.L1334M	.	.	.
GDF5	8200	broad.mit.edu	36	20	33488640	33488640	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000557	exon1	c.G483A	p.P161P	.	.	.
SLC5A3	6526	broad.mit.edu	36	21	34391019	34391019	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006933	exon2	c.A1652T	p.N551I	.	.	.
PIK3IP1	113791	broad.mit.edu	36	22	30015639	30015639	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135911	exon4	c.A354C	p.E118D	.	.	.
PNPLA3	80339	broad.mit.edu	36	22	42664441	42664441	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025225	exon6	c.G935A	p.W312X	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48897772	48897772	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164104	exon9	c.G1319A	p.R440Q	.	.	.
IRS1	3667	broad.mit.edu	36	2	227369477	227369478	+	In_Frame_Ins	INS	-	GGC	GGC	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005544	exon1	c.2222_2223insGCC	p.S741delinsCP	.	.	.
NOL10	79954	broad.mit.edu	36	2	10731097	10731097	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024894	exon5	c.G327T	p.K109N	.	.	.
NMI	9111	broad.mit.edu	36	2	151847661	151847661	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004688	exon2	c.G48A	p.S16S	.	.	.
RIF1	55183	broad.mit.edu	36	2	152028280	152028280	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001177664	exon30	c.C4000G	p.Q1334E	.	.	.
GALNT13	114805	broad.mit.edu	36	2	154509387	154509387	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052917	exon3	c.C131T	p.P44L	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206884142	206884142	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020923	exon5	c.T6645C	p.I2215I	.	.	.
TNS1	7145	broad.mit.edu	36	2	218421255	218421255	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022648	exon17	c.T1855A	p.S619T	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237939234	237939234	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_057166	exon9	c.C3863T	p.S1288L	.	.	.
DNAJB8	165721	broad.mit.edu	36	3	129664683	129664683	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153330	exon3	c.C96T	p.P32P	.	.	.
PLXND1	23129	broad.mit.edu	36	3	130763382	130763382	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015103	exon28	c.C4880T	p.S1627L	.	.	.
STAG1	10274	broad.mit.edu	36	3	137623983	137623983	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005862	exon19	c.G1996T	p.V666L	.	.	.
IL20RB	53833	broad.mit.edu	36	3	138183878	138183878	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144717	exon3	c.C402G	p.N134K	.	.	.
SPATA16	83893	broad.mit.edu	36	3	174220019	174220019	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031955	exon4	c.C799T	p.R267C	.	.	.
LRRC3B	116135	broad.mit.edu	36	3	26726517	26726517	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052953	exon2	c.C350A	p.T117N	.	.	.
TGM4	7047	broad.mit.edu	36	3	44926589	44926589	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003241	exon11	c.C1331G	p.S444C	.	.	.
NICN1	84276	broad.mit.edu	36	3	49437425	49437425	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032316	exon5	c.C561T	p.I187I	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77728532	77728532	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001128929	exon18	c.G2736C	p.E912D	.	.	.
ROBO1	6091	broad.mit.edu	36	3	79150301	79150301	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133631	exon1	c.A1T	p.M1L	.	.	.
ANK2	287	broad.mit.edu	36	4	114476465	114476465	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020977	exon30	c.G3394A	p.E1132K	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138670475	138670475	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019035	exon1	c.G2218A	p.E740K	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153466739	153466739	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018315	exon9	c.C1273T	p.R425C	 FBXW7,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
ARAP2	116984	broad.mit.edu	36	4	35888699	35888699	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015230	exon6	c.C1195T	p.R399X	.	.	.
GABRG1	2565	broad.mit.edu	36	4	45748229	45748229	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173536	exon8	c.C1100G	p.T367S	.	.	.
APC	324	broad.mit.edu	36	5	112144491	112144491	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon5	c.C667T	p.R223X	 APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.
DMXL1	1657	broad.mit.edu	36	5	118473793	118473793	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005509	exon5	c.C413T	p.T138I	.	.	.
RAD50	10111	broad.mit.edu	36	5	132004275	132004275	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005732	exon24	c.C3631T	p.L1211F	.	.	.
ANKHD1-EIF4EBP3	404734	broad.mit.edu	36	5	139799983	139799983	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017747	exon4	c.G713T	p.G238V	.	.	.
PCDHB10	56126	broad.mit.edu	36	5	140553354	140553354	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018930	exon1	c.G1045A	p.V349I	.	.	.
CDH18	1016	broad.mit.edu	36	5	19519377	19519377	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004934	exon12	c.C1672T	p.R558X	.	.	.
AGXT2	64902	broad.mit.edu	36	5	35076513	35076513	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031900	exon2	c.G101A	p.R34Q	.	.	.
ESM1	11082	broad.mit.edu	36	5	54316829	54316829	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007036	exon1	c.T274C	p.F92L	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71528054	71528054	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005909	exon5	c.T3116A	p.M1039K	.	.	.
C5orf49	134121	broad.mit.edu	36	5	7885013	7885013	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001089584	exon3	c.G394T	p.D132Y	.	.	.
ROS1	6098	broad.mit.edu	36	6	117716348	117716348	+	Nonstop_Mutation	SNP	T	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002944	exon43	c.A7044T	p.X2348Y	.	.	.
PCMT1	5110	broad.mit.edu	36	6	150112752	150112752	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005389	exon1	c.G196C	p.A66P	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152725037	152725037	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033071	exon64	c.G10281A	p.A3427A	.	.	.
LPA	4018	broad.mit.edu	36	6	160926118	160926118	+	Silent	SNP	C	G	G	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005577	exon27	c.G4239C	p.S1413S	.	.	.
KIAA0319	9856	broad.mit.edu	36	6	24664933	24664933	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001168377	exon18	c.G2738A	p.C913Y	.	.	.
MUC17	140453	broad.mit.edu	36	7	100467976	100467976	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040105	exon3	c.G6559C	p.D2187H	.	.	.
RELN	5649	broad.mit.edu	36	7	103017331	103017331	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005045	exon28	c.T4093A	p.F1365I	.	.	.
RELN	5649	broad.mit.edu	36	7	103416875	103416875	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005045	exon1	c.G165A	p.V55V	.	.	.
LRRN3	54674	broad.mit.edu	36	7	110550455	110550455	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018334	exon2	c.C391A	p.L131M	.	.	.
ISPD	729920	broad.mit.edu	36	7	16382387	16382387	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001101426	exon3	c.C539T	p.A180V	.	.	.
COBL	23242	broad.mit.edu	36	7	51062935	51062935	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015198	exon10	c.C3352T	p.H1118Y	.	.	.
CDK14	5218	broad.mit.edu	36	7	90214996	90214996	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012395	exon3	c.C380G	p.S127C	.	.	.
LHFPL3	375612	broad.mit.edu	36	7	103756735	103756735	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199000	exon1	c.272delG	p.R91fs	.	.	.
ABRA	137735	broad.mit.edu	36	8	107842900	107842900	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139166	exon2	c.G687A	p.E229E	.	.	.
TRHR	7201	broad.mit.edu	36	8	110169503	110169503	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003301	exon1	c.T586G	p.F196V	.	.	.
KCNT1	57582	broad.mit.edu	36	9	137804527	137804527	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020822	exon19	c.C2154G	p.D718E	.	.	.
SMARCA2	6595	broad.mit.edu	36	9	2044607	2044607	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139045	exon6	c.C1057T	p.R353C	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32621850	32621850	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153809	exon1	c.G3728A	p.R1243Q	.	.	.
UBE2R2	54926	broad.mit.edu	36	9	33907140	33907140	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017811	exon5	c.G622A	p.D208N	.	.	.
KIAA1432	57589	broad.mit.edu	36	9	5737357	5737357	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020829	exon11	c.G1067A	p.G356E	.	.	.
SH2D1A	4068	broad.mit.edu	36	X	123308222	123308222	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001114937	exon1	c.G49A	p.E17K	.	.	.
FMR1NB	158521	broad.mit.edu	36	X	146870624	146870624	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152578	exon1	c.C10T	p.H4Y	.	.	.
DMD	1756	broad.mit.edu	36	X	31860139	31860139	+	De_novo_Start_OutOfFrame	SNP	T	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004011	exon18	c.A2718T	p.K906N	.	.	.