Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ZBTB7C	201501	hgsc.bcm.edu	36	18	43821072	43821073	+	Frame_Shift_Ins	INS	-	-	TTGA	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001039360	exon2	c.405_406insTCAA	p.E135fs	.	.	.
TRA2A	29896	hgsc.bcm.edu	36	7	23512380	23512380	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013293	exon6	c.C672T	p.G224G	.	.	.
NPSR1	387129	hgsc.bcm.edu	36	7	34817968	34817968	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_207172	exon4	c.C446T	p.A149V	.	.	.
KCNH2	3757	hgsc.bcm.edu	36	7	150275046	150275046	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_172057	exon10	c.C2162T	p.A721V	.	.	.
TASP1	55617	hgsc.bcm.edu	36	20	13462769	13462769	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017714	exon9	c.T695A	p.L232X	.	.	.
NINL	22981	hgsc.bcm.edu	36	20	25382251	25382251	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025176	exon24	c.C3985T	p.L1329L	.	.	.
FERMT1	55612	hgsc.bcm.edu	36	20	6036233	6036233	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017671	exon6	c.795delT	p.D265fs	.	.	.
RNASE1	6035	hgsc.bcm.edu	36	14	20339881	20339881	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002933	exon2	c.A187G	p.M63V	.	.	.
DAAM1	23002	hgsc.bcm.edu	36	14	58851762	58851762	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014992	exon4	c.A285G	p.E95E	.	.	.
SERPINA10	51156	hgsc.bcm.edu	36	14	93826174	93826174	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_016186	exon2	c.G510A	p.K170K	.	.	.
WDR25	79446	hgsc.bcm.edu	36	14	99917669	99917669	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001161476	exon2	c.G655C	p.E219Q	.	.	.
DNMT1	1786	hgsc.bcm.edu	36	19	10152211	10152211	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001130823	exon4	c.A260G	p.N87S	.	.	.
RTBDN	83546	hgsc.bcm.edu	36	19	12801707	12801707	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031429	exon3	c.A183T	p.G61G	.	.	.
OR10H1	26539	hgsc.bcm.edu	36	19	15779177	15779177	+	Missense_Mutation	SNP	G	G	T	rs62619246	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013940	exon1	c.C671A	p.A224D	.	.	.
NWD1	284434	hgsc.bcm.edu	36	19	16779828	16779828	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001007525	exon18	c.C4168T	p.R1390X	.	.	.
SIN3B	23309	hgsc.bcm.edu	36	19	16801618	16801618	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015260	exon2	c.C137T	p.T46I	.	.	.
ZNF71	58491	hgsc.bcm.edu	36	19	61825526	61825526	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021216	exon3	c.G1059C	p.P353P	.	.	.
OR7G3	390883	hgsc.bcm.edu	36	19	9098557	9098557	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001001958	exon1	c.C70T	p.Q24X	.	.	.
ZNF266	10781	hgsc.bcm.edu	36	19	9386382	9386382	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006631	exon11	c.C219T	p.N73N	.	.	.
OLFM2	93145	hgsc.bcm.edu	36	19	9828532	9828532	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_058164	exon5	c.G638A	p.R213H	.	.	.
TOP1MT	116447	hgsc.bcm.edu	36	8	144469594	144469594	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_052963	exon11	c.C1408T	p.R470X	.	.	.
SCRIB	23513	hgsc.bcm.edu	36	8	144964845	144964845	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015356	exon12	c.G1403A	p.R468Q	.	.	.
DPYSL2	1808	hgsc.bcm.edu	36	8	26540067	26540067	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001386	exon5	c.G496A	p.V166M	.	.	.
CPA6	57094	hgsc.bcm.edu	36	8	68558604	68558604	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020361	exon8	c.G791A	p.R264H	.	.	.
TEX15	56154	hgsc.bcm.edu	36	8	30825365	30825365	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_031271	exon1	c.G711T	p.K237N	.	.	.
IVL	3713	hgsc.bcm.edu	36	1	151150331	151150331	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005547	exon2	c.C1434A	p.G478G	.	.	.
NES	10763	hgsc.bcm.edu	36	1	154907573	154907573	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006617	exon4	c.G3031A	p.E1011K	.	.	.
POGK	57645	hgsc.bcm.edu	36	1	165086100	165086100	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017542	exon5	c.G1660A	p.A554T	.	.	.
CDC73	79577	hgsc.bcm.edu	36	1	191485621	191485621	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024529	exon16	c.A1556G	p.D519G	.	.	.
MYBPH	4608	hgsc.bcm.edu	36	1	201405026	201405026	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004997	exon8	c.G1208A	p.C403Y	.	.	.
NID1	4811	hgsc.bcm.edu	36	1	234256033	234256033	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002508	exon8	c.G1770A	p.T590T	.	.	.
NUDC	10726	hgsc.bcm.edu	36	1	27141986	27141986	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_006600	exon6	c.G584A	p.G195E	.	.	.
SESN2	83667	hgsc.bcm.edu	36	1	28472542	28472542	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031459	exon6	c.C837T	p.S279S	.	.	.
DHCR24	1718	hgsc.bcm.edu	36	1	55092456	55092456	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014762	exon7	c.C1060T	p.L354F	.	.	.
C8B	732	hgsc.bcm.edu	36	1	57167685	57167685	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000066	exon12	c.G1756C	p.E586Q	.	.	.
NEGR1	257194	hgsc.bcm.edu	36	1	72173409	72173409	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173808	exon2	c.C350T	p.T117M	.	.	.
ACTN2	88	hgsc.bcm.edu	36	1	234992409	234992409	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001103	exon21	c.G2552A	p.R851H	.	.	.
VWA5A	4013	hgsc.bcm.edu	36	11	123521203	123521203	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014622	exon17	c.A2204G	p.H735R	.	.	.
RICS	9743	hgsc.bcm.edu	36	11	128345107	128345107	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014715	exon13	c.C4122T	p.D1374D	.	.	.
PRRG4	79056	hgsc.bcm.edu	36	11	32814932	32814932	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024081	exon3	c.G256T	p.E86X	.	.	.
SLC1A2	6506	hgsc.bcm.edu	36	11	35259061	35259061	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004171	exon9	c.G1350A	p.M450I	.	.	.
TRIM44	54765	hgsc.bcm.edu	36	11	35704273	35704273	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017583	exon3	c.G973T	p.E325X	.	.	.
AHNAK	79026	hgsc.bcm.edu	36	11	62053026	62053026	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001620	exon5	c.G5439A	p.P1813P	.	.	.
USP45	85015	hgsc.bcm.edu	36	6	100021297	100021297	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080481	exon11	c.G1079T	p.S360I	.	.	.
C6orf204	387119	hgsc.bcm.edu	36	6	118919617	118919617	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_206921	exon6	c.A1362C	p.E454D	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152807331	152807331	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033071	exon30	c.A3766C	p.I1256L	.	.	.
IGF2R	3482	hgsc.bcm.edu	36	6	160370617	160370617	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000876	exon7	c.T822C	p.F274F	.	.	.
MAS1L	116511	hgsc.bcm.edu	36	6	29563301	29563301	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_052967	exon1	c.G358C	p.V120L	.	.	.
BRPF3	27154	hgsc.bcm.edu	36	6	36289842	36289842	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015695	exon8	c.G2690A	p.R897H	.	.	.
FILIP1	27145	hgsc.bcm.edu	36	6	76080379	76080379	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015687	exon5	c.A1889C	p.K630T	.	.	.
TMEM132E	124842	hgsc.bcm.edu	36	17	29983957	29983957	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_207313	exon7	c.C1334A	p.P445H	.	.	.
MRC2	9902	hgsc.bcm.edu	36	17	58107612	58107612	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006039	exon11	c.C1822T	p.R608W	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0	.	.
SPATA20	64847	hgsc.bcm.edu	36	17	45981461	45981461	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022827	exon6	c.C575T	p.P192L	.	.	.
TAOK2	9344	hgsc.bcm.edu	36	16	29905776	29905776	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016151	exon16	c.A2682T	p.A894A	.	.	.
NMRAL1	57407	hgsc.bcm.edu	36	16	4459369	4459369	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020677	exon3	c.C139T	p.L47L	.	.	.
ZFHX3	463	hgsc.bcm.edu	36	16	71385732	71385732	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006885	exon9	c.C8350T	p.P2784S	.	.	.
GLG1	2734	hgsc.bcm.edu	36	16	73057108	73057108	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145666	exon18	c.C2601G	p.Y867X	.	.	.
LDHD	197257	hgsc.bcm.edu	36	16	73703787	73703787	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153486	exon11	c.C1492A	p.Q498K	.	.	.
MED12L	116931	hgsc.bcm.edu	36	3	152566334	152566334	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_053002	exon21	c.C3087T	p.N1029N	.	.	.
MASP1	5648	hgsc.bcm.edu	36	3	188444063	188444063	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_139125	exon9	c.G1131T	p.L377L	.	.	.
ZCWPW2	152098	hgsc.bcm.edu	36	3	28451702	28451702	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001040432	exon3	c.G430A	p.D144N	.	.	.
UTP20	27340	hgsc.bcm.edu	36	12	100203496	100203496	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014503	exon3	c.T144C	p.F48F	.	.	.
ACAD10	80724	hgsc.bcm.edu	36	12	110659146	110659146	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025247	exon12	c.C1669T	p.R557C	.	.	.
BCL7A	605	hgsc.bcm.edu	36	12	120981410	120981410	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020993	exon6	c.G654C	p.K218N	.	.	.
ZNF664	144348	hgsc.bcm.edu	36	12	123063286	123063286	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152437	exon6	c.G642C	p.L214L	.	.	.
UBC	7316	hgsc.bcm.edu	36	12	123963974	123963974	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021009	exon2	c.C297T	p.I99I	.	.	.
ZNF10	7556	hgsc.bcm.edu	36	12	132242287	132242287	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015394	exon5	c.G382A	p.E128K	.	.	.
PTPRO	5800	hgsc.bcm.edu	36	12	15564457	15564457	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002848	exon10	c.C1835T	p.T612M	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
TUBA1C	84790	hgsc.bcm.edu	36	12	47952419	47952419	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032704	exon4	c.G492A	p.K164K	.	.	.
KCNA1	3736	hgsc.bcm.edu	36	12	4892051	4892051	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000217	exon2	c.C1246T	p.H416Y	.	.	.
KRT80	144501	hgsc.bcm.edu	36	12	50853767	50853767	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_182507	exon5	c.G715A	p.G239S	.	.	.
EEA1	8411	hgsc.bcm.edu	36	12	91737314	91737314	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003566	exon14	c.A1629G	p.E543E	.	.	.
KRT81	3887	hgsc.bcm.edu	36	12	50966529	50966529	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002281	exon9	c.G1295A	p.R432Q	.	.	.
EDC3	80153	hgsc.bcm.edu	36	15	72714891	72714891	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142444	exon7	c.G1104T	p.L368L	.	.	.
NTRK3	4916	hgsc.bcm.edu	36	15	86480138	86480138	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001007156	exon8	c.C903G	p.V301V	.	.	.
USP38	84640	hgsc.bcm.edu	36	4	144354533	144354533	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032557	exon9	c.G1954A	p.G652S	.	.	.
NPY2R	4887	hgsc.bcm.edu	36	4	156354575	156354575	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000910	exon2	c.C34A	p.Q12K	.	.	.
GUCY1A3	2982	hgsc.bcm.edu	36	4	156837574	156837574	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130682	exon3	c.A105G	p.G35G	.	.	.
NFXL1	152518	hgsc.bcm.edu	36	4	47595758	47595758	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152995	exon7	c.T963G	p.H321Q	.	.	.
AASDH	132949	hgsc.bcm.edu	36	4	56910573	56910573	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_181806	exon11	c.C2101T	p.H701Y	.	.	.
WDFY3	23001	hgsc.bcm.edu	36	4	85971629	85971629	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014991	exon8	c.C730T	p.R244C	.	.	.
MAPK10	5602	hgsc.bcm.edu	36	4	87169380	87169380	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138981	exon8	c.C811G	p.P271A	.	.	.
EVC2	132884	hgsc.bcm.edu	36	4	5684569	5684571	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	TCT	TCT	TCT	-	TCT	TCT	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001166136	exon11	c.1320_1322del	p.440_441del	.	.	.
ANAPC4	29945	hgsc.bcm.edu	36	4	24999455	24999455	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013367	exon6	c.A462G	p.K154K	.	.	.
COL4A5	1287	hgsc.bcm.edu	36	X	107810823	107810823	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033380	exon44	c.G4055A	p.R1352Q	.	.	.
AMOT	154796	hgsc.bcm.edu	36	X	111941215	111941215	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133265	exon4	c.A228G	p.K76K	.	.	.
IL13RA1	3597	hgsc.bcm.edu	36	X	117759031	117759031	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001560	exon2	c.T112G	p.L38V	.	.	.
CD40LG	959	hgsc.bcm.edu	36	X	135569086	135569086	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000074	exon5	c.C632A	p.T211N	.	.	.
GABRA3	2556	hgsc.bcm.edu	36	X	151087472	151087472	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000808	exon10	c.G1363A	p.V455I	.	.	.
CDKL5	6792	hgsc.bcm.edu	36	X	18556539	18556539	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003159	exon18	c.G2624A	p.R875Q	.	.	.
MAGEB18	286514	hgsc.bcm.edu	36	X	26067521	26067521	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173699	exon2	c.A498C	p.E166D	.	.	.
PHF8	23133	hgsc.bcm.edu	36	X	53987377	53987377	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001184898	exon21	c.A2513C	p.K838T	.	.	.
TAF1	6872	hgsc.bcm.edu	36	X	70514184	70514184	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138923	exon6	c.C718T	p.R240C	.	.	.
ATP7A	538	hgsc.bcm.edu	36	X	77132088	77132088	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000052	exon4	c.G1314T	p.M438I	.	.	.
HECW2	57520	hgsc.bcm.edu	36	2	196891981	196891981	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020760	exon9	c.C1878T	p.S626S	.	.	.
TTC27	55622	hgsc.bcm.edu	36	2	32899395	32899395	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001193509	exon20	c.T2268C	p.F756F	.	.	.
CCDC108	255101	hgsc.bcm.edu	36	2	219604166	219604166	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_194302	exon8	c.T921A	p.F307L	.	.	.
TNC	3371	hgsc.bcm.edu	36	9	116828691	116828691	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002160	exon26	c.G6274A	p.V2092M	.	.	.
PTGS1	5742	hgsc.bcm.edu	36	9	124183584	124183584	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000962	exon6	c.T610A	p.F204I	.	.	.
S1PR3	1903	hgsc.bcm.edu	36	9	90806686	90806686	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005226	exon2	c.G751A	p.V251M	.	.	.
F10	2159	hgsc.bcm.edu	36	13	112851355	112851355	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000504	exon8	c.C990A	p.T330T	.	.	.
C6	729	hgsc.bcm.edu	36	5	41237566	41237566	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000065	exon3	c.G151C	p.V51L	.	.	.
RAB3C	115827	hgsc.bcm.edu	36	5	58057678	58057678	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138453	exon3	c.A345G	p.E115E	.	.	.
ADCY2	108	hgsc.bcm.edu	36	5	7467806	7467806	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020546	exon2	c.T331G	p.L111V	.	.	.
RASGRF2	5924	hgsc.bcm.edu	36	5	80424437	80424437	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006909	exon10	c.G1452A	p.S484S	.	.	.