Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
CCT8L2	150160	hgsc.bcm.edu	36	22	15452282	15452283	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_014406	exon1	c.1159_1160insG	p.S387fs	.	.	.
NCRNA00174	285908	hgsc.bcm.edu	36	7	65479978	65479979	+	Frame_Shift_Ins	INS	-	-	AT	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	.	.	.	.	.	.	.
SDK1	221935	hgsc.bcm.edu	36	7	4023366	4023366	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152744	exon17	c.C2458T	p.R820W	.	.	.
C20orf160	140706	hgsc.bcm.edu	36	20	30081216	30081216	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_080625	exon8	c.G1252A	p.G418R	.	.	.
TEP1	7011	hgsc.bcm.edu	36	14	19918283	19918283	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007110	exon34	c.C4954T	p.H1652Y	.	.	.
RPS6KL1	83694	hgsc.bcm.edu	36	14	74457839	74457839	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_031464	exon2	c.G159A	p.A53A	.	.	.
WARS2	10352	hgsc.bcm.edu	36	1	119377266	119377266	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015836	exon6	c.C874T	p.R292C	.	.	.
MRPL20	55052	hgsc.bcm.edu	36	1	1327400	1327400	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017971	exon4	c.G376A	p.E126K	.	.	.
HMCN1	83872	hgsc.bcm.edu	36	1	184425508	184425508	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_031935	exon107	c.C16783T	p.R5595X	.	.	.
KIF17	57576	hgsc.bcm.edu	36	1	20903633	20903633	+	Silent	SNP	C	C	T	rs2296226	byCluster;byFrequency	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001122819	exon5	c.G1017A	p.P339P	.	.	.
GCNT2	2651	hgsc.bcm.edu	36	6	10694294	10694294	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_145655	exon1	c.C86T	p.P29L	.	.	.
TFEB	7942	hgsc.bcm.edu	36	6	41765491	41765491	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007162	exon5	c.G505A	p.D169N	.	.	.
BMP6	654	hgsc.bcm.edu	36	6	7825315	7825315	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001718	exon6	c.C1374T	p.H458H	.	.	.
PHF12	57649	hgsc.bcm.edu	36	17	24275075	24275075	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001033561	exon4	c.G693C	p.L231L	.	.	.
CTNS	1497	hgsc.bcm.edu	36	17	3505069	3505069	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004937	exon6	c.C254G	p.S85C	.	.	.
ASB16	92591	hgsc.bcm.edu	36	17	39610531	39610531	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_080863	exon4	c.G1091A	p.R364Q	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518937	7518937	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon6	c.C637T	p.R213X	TP53,central_nervous_system,brain,Substitution - Missense,+1	.	.
SON	6651	hgsc.bcm.edu	36	21	33849185	33849185	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032195	exon3	c.T5778C	p.S1926S	.	.	.
ACSM5	54988	hgsc.bcm.edu	36	16	20337086	20337086	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017888	exon3	c.C409T	p.R137W	.	.	.
SRCAP	10847	hgsc.bcm.edu	36	16	30643227	30643227	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006662	exon25	c.C4981G	p.Q1661E	.	.	.
TMEM43	79188	hgsc.bcm.edu	36	3	14151346	14151346	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024334	exon8	c.G659A	p.R220H	.	.	.
MSRB3	253827	hgsc.bcm.edu	36	12	64008593	64008593	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001193461	exon4	c.C206T	p.T69I	.	.	.
PPIB	5479	hgsc.bcm.edu	36	15	62239449	62239449	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000942	exon3	c.A250G	p.K84E	.	.	.
DRP2	1821	hgsc.bcm.edu	36	X	100379315	100379315	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001939	exon5	c.T333A	p.L111L	.	.	.
FHL1	2273	hgsc.bcm.edu	36	X	135116350	135116350	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001159702	exon3	c.C93T	p.C31C	.	.	.
TNFRSF19	55504	hgsc.bcm.edu	36	13	23140834	23140834	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_148957	exon9	c.C843T	p.N281N	.	.	.
FLT1	2321	hgsc.bcm.edu	36	13	27902198	27902198	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002019	exon8	c.G1095A	p.P365P	.	.	.
APC	324	hgsc.bcm.edu	36	5	112192485	112192485	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon12	c.C1606T	p.R536X	APC,ovary,NS,Substitution - Nonsense,0	.	.
PCDHB2	56133	hgsc.bcm.edu	36	5	140455333	140455333	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018936	exon1	c.G775A	p.V259I	.	.	.
SPEF2	79925	hgsc.bcm.edu	36	5	35664372	35664372	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024867	exon2	c.C112G	p.L38V	.	.	.
ADCY2	108	hgsc.bcm.edu	36	5	7819897	7819897	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020546	exon17	c.C2192T	p.A731V	.	.	.