Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL NTotCov_SOL NVarCov_SOL dbSNPPopFreq COSMIC_Gene_Freq TRIOBP 11078 hgsc.bcm.edu 37 22 38120876 38120876 + Silent SNP C C A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_001039141 exon7 c.C2313A p.S771S AACATCCTGTACC . 82 3 82 0 . . KLHL1 57626 hgsc.bcm.edu 37 13 70456537 70456537 + Missense_Mutation SNP C C A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 KLHL1,right_lower_lobe,carcinoma,0,1 KLHL1 NM_020866 exon5 c.G1105T p.V369F CAGGAACATTGAC . 24 2 34 0 . 0 PIWIL1 9271 hgsc.bcm.edu;bcgsc.ca 37 12 130832683 130832683 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 PIWIL1,NS,carcinoma,0,2 PIWIL1 NM_004764 exon7 c.G689T p.R230L TTGGACGAAATTA . 81 4 60 0 . 0 TAF3 83860 hgsc.bcm.edu 37 10 8019213 8019213 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 TAF3,NS,carcinoma,0,1 TAF3 NM_031923 exon4 c.G2242T p.E748X AAAGTGGAACCAG . 56 3 65 0 . 0 LNP1 348801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 100170610 100170610 + Silent SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_001085451 exon3 c.G204A p.R68R TAGAAGGCATTCT . 39 4 54 0 . . PDE3B 5140 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 14666369 14666369 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_000922 exon1 c.G748T p.G250C CTCTCCGGCCTGG . 23 6 35 0 . . ZNF648 127665 hgsc.bcm.edu 37 1 182025729 182025729 + Missense_Mutation SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 ZNF648,right_upper_lobe,carcinoma,0,1 ZNF648 NM_001009992 exon2 c.G1417A p.E473K GCCTCTCGCCAGT . 14 2 21 0 . 0 PRKCI 5584 hgsc.bcm.edu;bcgsc.ca 37 3 169999040 169999040 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_002740 exon10 c.G969T p.Q323H CTTTCAGACAGAA . 68 4 49 0 . . ZC2HC1A 51101 hgsc.bcm.edu;bcgsc.ca 37 8 79590817 79590817 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_016010 exon3 c.G113T p.C38F CCATTTGCCAGAA . 82 4 93 0 . . FLRT3 23767 hgsc.bcm.edu 37 20 14307246 14307246 + Missense_Mutation SNP G G T rs150799973 alternate_allele TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 FLRT3,colon,carcinoma,0,1 FLRT3 NM_013281 exon2 c.C907A p.R303S TGTTGCGAAGAAT . 45 2 34 0 . 0 GYS1 2997 hgsc.bcm.edu 37 19 49473939 49473939 + Missense_Mutation SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_002103 exon14 c.G1673A p.R558H AGGCTGCGGAACC . 99 3 96 0 . . RPS10 6204 hgsc.bcm.edu 37 6 34392484 34392484 + Missense_Mutation SNP C C G novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 RPS10,colon,carcinoma,0,1 RPS10 NM_001203245 exon3 c.G284C p.R95P CTACGGCGTAGGG . 57 3 58 1 . 0 DRD1 1812 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 174869423 174869423 + Missense_Mutation SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_000794 exon2 c.G680A p.R227H GCAATGCGCCGTA . 33 10 22 0 . . WDR81 124997 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 1628548 1628548 + Missense_Mutation SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_001163809 exon1 c.C295T p.P99S AGGCTGCCTGCCG . 16 6 17 0 . . PRKCSH 5589 hgsc.bcm.edu 37 19 11558341 11558341 + Missense_Mutation SNP G G C novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 .,2 . NM_001001329 exon11 c.G937C p.E313Q CCCACAGAGGAGG . 29 3 22 1 . 55 CUX2 23316 hgsc.bcm.edu 37 12 111747906 111747906 + Silent SNP C C A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_015267 exon15 c.C1320A p.P440P CTACCCCTCCCCT . 73 4 84 0 . . SV2C 22987 hgsc.bcm.edu 37 5 75427856 75427856 + Missense_Mutation SNP A A G novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 SV2C,colon,carcinoma,0,1 SV2C NM_014979 exon2 c.A281G p.Q94R AGTATCAGGGCAT . 28 2 27 0 . 0 DNAH3 55567 hgsc.bcm.edu 37 16 21080893 21080893 + Missense_Mutation SNP C C A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 DNAH3_ENST00000261383,NS,carcinoma,-1,2 DNAH3_ENST00000261383 NM_017539 exon23 c.G3224T p.R1075L TGTATGCGAATTA . 44 2 34 0 . -1 DDX11 1663 hgsc.bcm.edu 37 12 31242358 31242358 + Missense_Mutation SNP G G A rs199585751 TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_030653 exon8 c.G814A p.V272M GAAGACGTGAAAA . 55 4 53 0 . . STRC 161497 hgsc.bcm.edu 37 15 43893654 43893654 + Silent SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 STRC_ENST00000450892,NS,carcinoma,0,1 STRC_ENST00000450892 NM_153700 exon24 c.C4641A p.I1547I CACTAGGATCAGC . 60 3 67 0 . 0 NFASC 23114 hgsc.bcm.edu 37 1 204956669 204956669 + Splice_Site SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 NFASC_ENST00000339876,NS,carcinoma,0,2 NFASC_ENST00000339876 NM_015090 exon23 c.2902+1G>A . TGGCCTGTACGTT . 50 2 57 0 . 0 BCAS3 54828 hgsc.bcm.edu 37 17 59112151 59112151 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_001099432 exon18 c.G1807T p.D603Y GAAAAAGGTATGT . 74 4 47 0 . . CLK1 1195 hgsc.bcm.edu 37 2 201718691 201718691 + Silent SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 CLK1_ENST00000434813,colon,carcinoma,0,2 CLK1_ENST00000434813 NM_001162407 exon12 c.C1372A p.R458R CTAATCGATCGTG . 45 3 55 0 . 0 XAGE3 170626 hgsc.bcm.edu;bcgsc.ca 37 X 52893878 52893878 + Missense_Mutation SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_133179 exon4 c.G239A p.G80D CATTCACCCCCAG . 51 4 31 0 . . SCARA5 286133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 27764677 27764677 + Missense_Mutation SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 SCARA5,caecum,carcinoma,0,1 SCARA5 NM_173833 exon6 c.C1084T p.R362C ACCCACGCATGCC . 30 7 36 0 . 0 BAP1 8314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 52440916 52440916 + Nonsense_Mutation SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 BAP1,NS,carcinoma,-2,1 BAP1 NM_004656 exon8 c.G588A p.W196X CTCCCCCCAGGGC . 24 12 35 0 . -2 UNC5A 90249 hgsc.bcm.edu 37 5 176304913 176304913 + Nonsense_Mutation SNP G G T rs149355192 alternate_allele TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 UNC5A,mouth,carcinoma,0,1 UNC5A NM_133369 exon11 c.G1654T p.E552X CTGGGCGAGGAGG . 34 2 35 0 . 0 C7orf62 219557 hgsc.bcm.edu 37 7 88424178 88424178 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 C7orf62,right_upper_lobe,carcinoma,0,2 C7orf62 NM_152706 exon2 c.C79A p.R27S TGCTACGTGGGAC . 52 3 52 0 . 0 CDC27 996 hgsc.bcm.edu 37 17 45234625 45234625 + Missense_Mutation SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 CDC27_ENST00000531206,NS,carcinoma,0,2 CDC27_ENST00000531206 NM_001114091 exon6 c.G601A p.V201I TAAGAACTGTCTC . 50 6 55 1 . 0 TPRN 286262 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 140093584 140093584 + Missense_Mutation SNP C C A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_001128228 exon1 c.G1580T p.R527L GCCTCCCGTGGCC . 14 5 18 0 . . POU5F1P3 642559 hgsc.bcm.edu 37 12 8287231 8287231 + RNA SNP T T C novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . . . . . ACGCCATCCCCCC . 146 6 157 0 . . NIPBL 25836 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 36961673 36961673 + Missense_Mutation SNP A A C novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_015384 exon5 c.A446C p.H149P TCTCACATAGCCC . 59 14 43 0 . . CHD3 1107 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 17 7798770 7798770 + Silent SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_001005271 exon10 c.C1794T p.P598P ACCCCCCCGTCCT . 27 4 43 0 . . AVIL 10677 hgsc.bcm.edu 37 12 58201157 58201157 + Missense_Mutation SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 AVIL,colon,carcinoma,0,1 AVIL NM_006576 exon12 c.G1448A p.R483H AAGTGGCGTGGCT . 21 3 38 0 . 0 APH1A 51107 hgsc.bcm.edu 37 1 150238956 150238956 + Missense_Mutation SNP C C A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 APH1A,trunk,malignant_melanoma,0,1 APH1A NM_001077628 exon6 c.G710T p.R237L ATACTTCGGAGGG . 48 3 32 0 . 0 SENP7 57337 hgsc.bcm.edu 37 3 101049208 101049208 + Silent SNP C C A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 SENP7,rectum,carcinoma,0,1 SENP7 NM_020654 exon20 c.G2721T p.S907S CAGTGTCGAAGTA . 50 2 76 0 . 0 MAML2 84441 hgsc.bcm.edu 37 11 95825221 95825221 + Silent SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 MAML2,NS,carcinoma,0,1 MAML2 NM_032427 exon2 c.G1974A p.Q658Q CTGCTGCTGTTGT . 31 2 45 0 . 0 OR2A12 346525 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 143792858 143792858 + Missense_Mutation SNP A A T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_001004135 exon1 c.A658T p.I220F TTGCACATCCTGG . 41 18 25 0 . . CEP290 80184 hgsc.bcm.edu 37 12 88530507 88530507 + Nonsense_Mutation SNP G G T rs370725951 alternate_allele TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_025114 exon6 c.C354A p.C118X AAGTTGGCAAATT . 80 4 83 0 . . NDRG3 57446 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 35315979 35315979 + Missense_Mutation SNP T T C novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_032013 exon5 c.A236G p.D79G TGCATATCCTCAA . 62 25 53 0 . . CLIP4 79745 hgsc.bcm.edu 37 2 29380187 29380187 + Missense_Mutation SNP C C A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 CLIP4,colon,carcinoma,0,1 CLIP4 NM_024692 exon11 c.C1373A p.P458H AAAGCCCTTCCCT . 56 3 69 0 . 0 OTX2 5015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 57268926 57268926 + Missense_Mutation SNP G G A rs376333965 alternate_allele TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_001270525 exon3 c.C421T p.P141S AGGGGGGAGTGAA . 31 12 31 0 . . COPS2 9318 hgsc.bcm.edu 37 15 49420221 49420221 + Nonsense_Mutation SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 COPS2,NS,carcinoma,0,1 COPS2 NM_001143887 exon13 c.C1279T p.R427X TATATCGTGCACC . 40 2 37 0 . 0 ABCA13 154664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 48314511 48314511 + Missense_Mutation SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_152701 exon17 c.C5248T p.L1750F TATGTGCTTCCTC . 54 10 53 0 . . USPL1 10208 hgsc.bcm.edu 37 13 31205413 31205413 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_005800 exon4 c.G670T p.A224S CCCCAGGCTTTAT . 74 3 58 0 . . GPS2 2874 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 7216703 7216703 + Missense_Mutation SNP C C G novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_004489 exon8 c.G720C p.Q240H ACCTGTCTGAGTG . 28 14 41 0 . . RNU5F-1 26828 hgsc.bcm.edu 37 1 220284124 220284124 + RNA SNP A A T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . . . . . TTTTTTAAAGTTA . 77 4 52 0 . . GRIN1 2902 hgsc.bcm.edu 37 9 140053112 140053112 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 GRIN1,NS,carcinoma,0,1 GRIN1 NM_001185091 exon9 c.G1216T p.E406X GGCGGAGAGACAG . 68 3 74 0 . 0 NR2E1 7101 hgsc.bcm.edu 37 6 108501554 108501554 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 NR2E1,caecum,carcinoma,0,1 NR2E1 NM_003269 exon6 c.G670T p.E224X TGGAGAGAACTGT . 39 2 53 0 . 0 ANPEP 290 hgsc.bcm.edu 37 15 90335685 90335685 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_001150 exon17 c.C2358A p.N786K TCACGGGTTATTA . 47 4 65 0 . . RAD54L2 23132 hgsc.bcm.edu 37 3 51696927 51696927 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 RAD54L2,colon,carcinoma,0,1 RAD54L2 NM_015106 exon22 c.G3895T p.V1299F CCACCCGTCTCCT . 32 2 34 0 . 0 GPS2 2874 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 7216573 7216573 + Missense_Mutation SNP C C A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_004489 exon9 c.G762T p.K254N CATCTGCTTTTGC . 38 19 33 0 . . ZNF45 7596 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 44417593 44417593 + Silent SNP A A G novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_003425 exon10 c.T1995C p.D665D ACCCTCATCATCA . 53 22 37 0 . . NETO2 81831 hgsc.bcm.edu 37 16 47117434 47117434 + Missense_Mutation SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 NETO2,colon,carcinoma,0,1 NETO2 NM_018092 exon9 c.C1276T p.R426W AGCGCCGCATCTT . 39 2 42 0 . 0 ZDHHC21 340481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 14619079 14619079 + Missense_Mutation SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_178566 exon10 c.C683T p.P228L TGCCATGGCTTTC . 18 9 16 0 . . POLE 5426 hgsc.bcm.edu;bcgsc.ca 37 12 133233951 133233951 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_006231 exon28 c.C3443A p.P1148H GCCGCAGGGATGG . 45 4 33 0 . . ENAM 10117 hgsc.bcm.edu 37 4 71510219 71510219 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 ENAM_ENST00000396073,NS,carcinoma,0,1 ENAM_ENST00000396073 NM_031889 exon9 c.G3076T p.E1026X CCTGATGAAGGCT . 32 2 41 0 . 0 SHROOM3 57619 hgsc.bcm.edu 37 4 77700128 77700128 + Missense_Mutation SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 SHROOM3,NS,carcinoma,0,1 SHROOM3 NM_020859 exon11 c.C5789T p.T1930M AGTCCACGCTCCT . 21 2 34 0 . 0 HLA-B 3106 hgsc.bcm.edu 37 6 31322910 31322910 + Missense_Mutation SNP G G A rs74189305 bycluster TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 HLA-B,NS,carcinoma,-1,4 HLA-B NM_005514 exon5 c.C986T p.A329V ATCACAGCAGCGA . 54 3 53 2 . -1 ARSI 340075 hgsc.bcm.edu 37 5 149678175 149678175 + Missense_Mutation SNP C C A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_001012301 exon2 c.G312T p.R104S CTGGTACCTGGTG . 34 4 20 0 . . KPNA5 3841 hgsc.bcm.edu 37 6 117045494 117045494 + Missense_Mutation SNP A A G novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 KPNA5,caecum,carcinoma,-2,1 KPNA5 NM_002269 exon10 c.A955G p.R319G GCATTAAGGGCAG . 48 2 52 0 . -2 CD36 948 hgsc.bcm.edu 37 7 80302680 80302680 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 CD36_ENST00000447544,NS,carcinoma,0,8 CD36_ENST00000447544 NM_001127444 exon11 c.G1209T p.K403N ATTAAAGAATCTG . 50 2 77 0 . 0 MGA 23269 hgsc.bcm.edu 37 15 42046766 42046766 + Splice_Site SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 MGA,NS,carcinoma,0,1 MGA NM_001080541 exon17 c.6512+1G>A . ACAGCCGTAAGTC . 44 2 44 0 . 0 PCDHA4 56144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140188703 140188703 + Missense_Mutation SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 PCDHA4_ENST00000530339,NS,carcinoma,0,2 PCDHA4_ENST00000530339 NM_031500 exon1 c.G1931A p.R644H CTCCGCGCCACCG . 63 20 58 1 . 0 ZNF100 163227 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 21910728 21910728 + Missense_Mutation SNP T T A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_173531 exon5 c.A386T p.E129V ATCGCTTCTTGAA . 45 21 78 0 . . DIAPH3 81624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 60435664 60435664 + Missense_Mutation SNP C C A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_001042517 exon22 c.G2614T p.D872Y TTGTGTCCTTTAG . 89 9 75 0 . . ANKRD62P1-PARP4P3 23783 hgsc.bcm.edu 37 22 17135026 17135026 + RNA SNP T T C novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . . . . . GTAATGTGGTACT . 33 4 21 0 . . MYH13 8735 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 17 10215287 10215287 + Missense_Mutation SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_003802 exon32 c.C4472T p.A1491V TCATAGGCATTCC . 33 4 36 0 . . GPR144 347088 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 127239301 127239301 + Silent SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_001161808 exon20 c.C2814T p.S938S GCACAGCCTGCCT . 61 10 66 0 . . MYO1C 4641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 1384109 1384109 + Missense_Mutation SNP C C A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_001080779 exon6 c.G698T p.G233V CGCTCCCCATGAT . 68 33 79 0 . . GPR37 2861 hgsc.bcm.edu 37 7 124404434 124404434 + Silent SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_005302 exon1 c.G597A p.K199K GGCCGTCTTGGAC . 79 3 90 0 . . BRD2 6046 hgsc.bcm.edu 37 6 32945701 32945701 + Missense_Mutation SNP G G T rs200978040 bycluster TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 BRD2_ENST00000395289,uveal_tract,malignant_melanoma,0,1 BRD2_ENST00000395289 NM_005104 exon9 c.G1497T p.E499D AGATGAGGAGGAC . 23 4 36 1 . 0 DOCK2 1794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 169509839 169509839 + Missense_Mutation SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_004946 exon52 c.G5470A p.D1824N ATCCCAGACTCGC . 54 18 37 0 . . OGDHL 55753 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 50960205 50960205 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_018245 exon5 c.C568A p.L190M CCCGCAGAGAGAG . 30 7 43 0 . . PCNXL2 80003 hgsc.bcm.edu 37 1 233275579 233275579 + Silent SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 .,1 . NM_014801 exon20 c.C3540T p.F1180F TCTTTCGAACCAC . 76 3 85 0 . 204 WEE2 494551 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 141429375 141429375 + Missense_Mutation SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_001105558 exon11 c.C1580T p.T527I GATATACCCATCA . 54 9 46 0 . . ZDHHC6 64429 hgsc.bcm.edu 37 10 114190585 114190585 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 ZDHHC6,NS,carcinoma,0,1 ZDHHC6 NM_022494 exon11 c.G1219T p.E407X CCCCCTCTGGGGC . 47 2 68 0 . 0 BRWD3 254065 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 79941034 79941034 + Missense_Mutation SNP C C G novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_153252 exon36 c.G4007C p.G1336A TGATGACCCTATT . 51 34 36 0 . . SASH1 23328 hgsc.bcm.edu 37 6 148792601 148792601 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 SASH1,NS,carcinoma,0,2 SASH1 NM_015278 exon6 c.G476T p.R159L ACTTCCGAAAGAA . 75 3 124 0 . 0 SH3PXD2A 9644 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 105526913 105526913 + Missense_Mutation SNP A A T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_014631 exon3 c.T168A p.D56E AAACTTATCCAAA . 18 4 48 0 . . SNX21 90203 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 44463735 44463735 + Missense_Mutation SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_033421 exon3 c.G427A p.D143N GTCAAGGACCCGC . 26 8 19 0 . . OR10H4 126541 hgsc.bcm.edu 37 19 16060516 16060516 + Silent SNP C C T rs370722157 TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 OR10H4,NS,carcinoma,0,1 OR10H4 NM_001004465 exon1 c.C699T p.A233A CTCTGCCGAAGGC . 41 2 30 0 . 0 FAM105A 54491 hgsc.bcm.edu;bcgsc.ca 37 5 14601188 14601188 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_019018 exon2 c.G179T p.C60F CCATCTGCTACTT . 47 4 47 0 . . DNAJC6 9829 hgsc.bcm.edu 37 1 65855273 65855273 + Silent SNP C C T rs139447717 TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 DNAJC6,NS,carcinoma,0,1 DNAJC6 NM_001256864 exon11 c.C1431T p.Y477Y GCATTACGGACAA . 48 2 37 0 0.000 0 RBP2 5948 hgsc.bcm.edu 37 3 139173596 139173596 + Missense_Mutation SNP C C A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 RBP2,NS,carcinoma,0,1 RBP2 NM_004164 exon3 c.G329T p.W110L TCAATCCACTGCT . 25 2 37 0 . 0 MRAP2 112609 hgsc.bcm.edu 37 6 84772626 84772626 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_138409 exon3 c.G142T p.G48X GTGATTGGATTTT . 52 4 56 0 . . PCDHA9 9752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140230059 140230059 + Missense_Mutation SNP C C G novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_031857 exon1 c.C1979G p.T660R CGCTGACGGCCAC . 70 21 50 0 . . LONRF1 91694 hgsc.bcm.edu 37 8 12586483 12586483 + Missense_Mutation SNP C C A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 LONRF1,NS,carcinoma,0,1 LONRF1 NM_152271 exon10 c.G1937T p.R646L CTAAACCGCTTTC . 34 3 48 0 . 0 RPSAP58 388524 hgsc.bcm.edu 37 19 24010294 24010294 + RNA SNP C C G novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 RPSAP58_ENST00000496398,NS,carcinoma,0,40 RPSAP58_ENST00000496398 . . . . ACTAACCAGATCC . 25 2 34 0 . 0 ADAM30 11085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 120438659 120438659 + Missense_Mutation SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 ADAM30,hand,carcinoma,0,1 ADAM30 NM_021794 exon1 c.G301A p.E101K GATCCTCCAGCAG . 44 14 37 0 . 0 ZP1 22917 hgsc.bcm.edu;bcgsc.ca 37 11 60638604 60638604 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_207341 exon5 c.G1001T p.G334V ACTGTGGAACCAC . 48 4 49 0 . . GRIK2 2898 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 102124680 102124680 + Splice_Site SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_175768 exon4 c.723+1G>T . AAACAGGTAACCT . 53 21 62 0 . . TRHR 7201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 110131447 110131447 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_003301 exon2 c.C960A p.Y320X GATTTACAATCTC . 51 14 41 0 . . TPR 7175 hgsc.bcm.edu 37 1 186304588 186304588 + Missense_Mutation SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 TPR_ENST00000367478,NS,carcinoma,-1,2 TPR_ENST00000367478 NM_003292 exon34 c.G4793A p.R1598H GTAATGCGAACAT . 40 2 43 0 . -1 CLK3 1198 hgsc.bcm.edu 37 15 74922183 74922183 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 CLK3_ENST00000454830,NS,carcinoma,0,2 CLK3_ENST00000454830 NM_001130028 exon13 c.G1876T p.E626X ACCCCTGAGGAGC . 24 2 26 0 . 0 GRM1 2911 hgsc.bcm.edu 37 6 146720582 146720582 + Missense_Mutation SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 GRM1_ENST00000392299,NS,carcinoma,0,2 GRM1_ENST00000392299 NM_000838 exon8 c.C2407T p.P803S TTTGTGCCCATTT . 34 2 24 0 . 0 SLCO2A1 6578 hgsc.bcm.edu 37 3 133657273 133657273 + Missense_Mutation SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 SLCO2A1,NS,carcinoma,0,1 SLCO2A1 NM_005630 exon12 c.G1690A p.A564T ACTTACCCAGCAA . 31 2 47 0 . 0 PTPN2 5771 hgsc.bcm.edu 37 18 12802116 12802116 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 PTPN2,colon,carcinoma,0,1 PTPN2 NM_001207013 exon9 c.C962A p.S321Y GCAGGAGATAAGT . 49 3 46 0 . 0 PKHD1L1 93035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 110431382 110431382 + Missense_Mutation SNP C C A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_177531 exon22 c.C2417A p.T806K CTGGGACAAATGT . 53 17 36 0 . . PLA2G4C 8605 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 48565379 48565379 + Missense_Mutation SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_001159322 exon14 c.G1163A p.R388Q TGCTTCCGGCTGC . 35 5 27 0 . . OSBP 5007 hgsc.bcm.edu 37 11 59369134 59369134 + Missense_Mutation SNP C C G novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 OSBP,colon,carcinoma,0,1 OSBP NM_002556 exon4 c.G1000C p.G334R CATTGCCAGGAGT . 35 2 32 0 . 0 CDCA7 83879 hgsc.bcm.edu;bcgsc.ca 37 2 174231093 174231093 + Missense_Mutation SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_031942 exon8 c.G1118A p.G373D TTCGAGGCCAGTT . 56 4 76 0 . . HDLBP 3069 hgsc.bcm.edu 37 2 242189360 242189360 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 HDLBP,NS,carcinoma,+1,1 HDLBP NM_005336 exon12 c.C1408A p.R470S GGATGCGCACGGA . 45 2 41 0 . +1 TSC2 7249 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 16 2126499 2126499 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_001114382 exon25 c.G2750T p.R917L GCCTGCGGTCCAA . 22 4 28 0 . . ATP9A 10079 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 50290700 50290700 + Silent SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 ATP9A,NS,malignant_melanoma,0,2 ATP9A NM_006045 exon11 c.C1029T p.I343I AATGGGGATGATG . 39 8 35 0 . 0 FMN2 56776 broad.mit.edu;bcgsc.ca 37 1 240371322 240371322 + Silent SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . FMN2 NM_020066 exon5 c.C3210T p.P1070P TCTACCCGGAGCG . 62 10 54 0 . 451 STIL 6491 broad.mit.edu 37 1 47770618 47770618 + Missense_Mutation SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . STIL NM_003035 exon3 c.C95T p.A32V CAAAGTGCACATT . 163 4 145 0 . 91 OR5M11 219487 broad.mit.edu 37 11 56309838 56309838 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . OR5M11 NM_001005245 exon1 c.C896A p.A299D TTCAAGGCCTGCT . 28 3 34 0 . 60 SPTBN2 6712 broad.mit.edu;bcgsc.ca 37 11 66460137 66460137 + Missense_Mutation SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . SPTBN2 NM_006946 exon25 c.G5060A p.R1687Q CGCTCCCGCCGCT . 8 4 22 0 . 188 PPP1R1A 5502 broad.mit.edu 37 12 54976556 54976556 + Silent SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 PPP1R1A_ENST00000257905,NS,carcinoma,-2,2 PPP1R1A NM_006741 exon4 c.G207A p.R69R CCGTTGCCGTGGA . 50 3 66 0 . 18 RFC3 5983 broad.mit.edu;bcgsc.ca 37 13 34398073 34398073 + Missense_Mutation SNP T T A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . RFC3 NM_002915 exon3 c.T245A p.I82N AAAAAATTGAAAT . 212 6 217 0 . 40 . 0 broad.mit.edu;bcgsc.ca 37 14 22616076 22616076 + RNA SNP T T C novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . . . . . ATTCTTTGGATTC . 45 5 43 0 . . ERVK13-1 0 broad.mit.edu 37 16 2712543 2712543 + RNA SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . . . . . GGAGCCCAATCAA . 62 6 69 1 . . GPS2 2874 broad.mit.edu;bcgsc.ca 37 17 7216378 7216378 + Missense_Mutation SNP C C G novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . GPS2 NM_004489 exon10 c.G870C p.Q290H AGGGAGCTGGGGG . 7 3 18 0 . 44 TTC27 55622 broad.mit.edu 37 2 32891802 32891802 + Silent SNP T T C novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . TTC27 NM_017735 exon7 c.T906C p.T302T ATTCACTCCAGCA . 64 3 52 0 . 71 BMP2 650 broad.mit.edu 37 20 6759625 6759625 + Silent SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . BMP2 NM_001200 exon3 c.C1080T p.C360C GGCATGCTGTGTC . 29 3 41 0 . 45 MUC4 4585 broad.mit.edu 37 3 195508902 195508902 + Silent SNP C C G rs79929234 TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 MUC4_ENST00000463781,NS,malignant_melanoma,-1,2 MUC4 NM_018406 exon2 c.G9549C p.T3183T AAGAGGCGTGGTG . 131 6 87 0 C|0.500;G|0.500 1505 LOC201651 0 broad.mit.edu 37 3 151491023 151491023 + RNA DEL T T - rs372396689 TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . . . . . CTTTACTTTTTTT . 6 2 5 0 . . . 0 broad.mit.edu 37 5 179121146 179121151 + RNA DEL AAAAAA AAAAAA - novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . . . . . CGTCTCAAAAAAA . 8 1 6 0 . . CYP3A43 64816 broad.mit.edu 37 7 99445221 99445221 + Missense_Mutation SNP G G T rs373256715 alternate_allele TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . CYP3A43 NM_057096 exon5 c.G429T p.K143N ATTCAAGGAAGTA . 52 3 62 1 . 52 HAS2 3037 broad.mit.edu 37 8 122626911 122626911 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . HAS2 NM_005328 exon4 c.C1097A p.A366E CACATTGCATTGT . 40 3 53 0 . 87 TUBBP5 0 broad.mit.edu 37 9 141069223 141069223 + RNA SNP T T C novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . . . . . AAGACGTGGGAGG . 52 5 44 1 . . RNR2 0 broad.mit.edu 37 MT 2534 2534 + RNA SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . . . . . GTATTAGAGGCAC . 964 7 263 0 . . FAT1 2195 ucsc.edu;bcgsc.ca 37 4 187539158 187539158 + Missense_Mutation SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . FAT1 NM_005245 exon10 c.C8582T p.A2861V TTAATGGCAAAGG . 33 4 39 0 . 500 PHF15 0 ucsc.edu 37 5 133871604 133871604 + Silent SNP C C T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . PHF15 NM_015288 exon2 c.C57T p.D19D CACTGACAGTAAG . 39 4 35 0 . 60 EEF1A1 1915 ucsc.edu 37 6 74227940 74227940 + Silent SNP A A C rs71481399 bycluster TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 A A Unknown Untested Somatic WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 EEF1A1,bladder,carcinoma,-2,1 EEF1A1 NM_001402 exon7 c.T1077G p.P359P CAATACAGGGGCA . 44 6 49 1 C|1.000;|0.000 56 RORB 6096 ucsc.edu;bcgsc.ca 37 9 77300435 77300435 + Silent SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . RORB NM_006914 exon10 c.G1281T p.L427L GAAGCTGCAGGTA . 39 4 29 0 . 89 USP8 9101 ucsc.edu 37 15 50785016 50785016 + Missense_Mutation SNP A A G rs41475144 bycluster TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 A A Unknown Untested Somatic WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 USP8,NS,carcinoma,0,3 USP8 NM_001128610 exon15 c.A2353G p.T785A GGAAATACTTGTT . 37 9 25 1 G|1.000;|0.000 90 USP8 9101 ucsc.edu 37 15 50785054 50785054 + Silent SNP C C T rs199814360 TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . USP8 NM_001128610 exon15 c.C2391T p.N797N ATGTAACGCTCCA . 34 8 24 0 . 90 ITGB3 3690 ucsc.edu 37 17 45368459 45368459 + Missense_Mutation SNP G G T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . ITGB3 . . . . CGGTGAGGTGGGC . 25 4 33 0 . 157 ATP13A1 57130 ucsc.edu;bcgsc.ca 37 19 19765461 19765461 + Silent SNP G G A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . ATP13A1 NM_020410 exon13 c.C1704T p.H568H GGCCCGGTGTGTT . 26 4 29 0 . 82 GPR32 2854 ucsc.edu 37 19 51274851 51274851 + Missense_Mutation SNP A A C rs78840344 bycluster TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 A A Unknown Untested Somatic WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 GPR32,NS,carcinoma,0,5 GPR32 NM_001506 exon1 c.A994C p.T332P TCTTTGACTTCTG . 45 5 52 1 . 68 PNPT1 87178 bcgsc.ca 37 2 55874589 55874589 + Splice_Site SNP C A A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . PNPT1 NM_033109 exon20 c.1496-1G>T . GAACCCCTATAAT . 148 5 144 0 . 68 DGKG 1608 bcgsc.ca 37 3 186038225 186038225 + Silent SNP G T T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . DGKG NM_001346 exon2 c.C24A p.S8S AGTGAGGGAGACC . 59 4 72 0 . 98 LOC647323 0 bcgsc.ca 37 3 193677710 193677710 + RNA SNP G T T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . . . . . TCCTGGGAGGTGA . 39 4 52 0 . . NAF1 92345 bcgsc.ca 37 4 164050118 164050118 + Silent SNP A G G novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . NAF1 NM_138386 exon8 c.T1416C p.P472P AGGGGGAGGGGGT . 25 12 69 1 . 69 NAF1 92345 bcgsc.ca 37 4 164050124 164050124 + Silent SNP T G G novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . NAF1 NM_138386 exon8 c.A1410C p.P470P AGGGGGTGGGGGT . 28 13 67 2 . 69 . 0 bcgsc.ca 37 6 112937924 112937924 + RNA SNP T C C novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . . . . . TCATTTTCTTCTA . 30 4 47 0 . . PRSS1 5644 bcgsc.ca 37 7 142460339 142460339 + Missense_Mutation SNP G A A rs200973660 bycluster TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . PRSS1 NM_002769 exon4 c.G512A p.C171Y CTAAGTGTGAAGC . 89 13 92 2 . 68 . 389626 bcgsc.ca 37 8 11786595 11786595 + RNA SNP A G G novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . . . . . GGAAAAAGGACAC . 65 4 81 0 . . CSPP1 79848 bcgsc.ca 37 8 68028315 68028315 + Missense_Mutation SNP G T T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . CSPP1 NM_024790 exon11 c.G1439T p.R480L ATTTGCGCAGTGG . 57 4 64 0 . 129 . 120824 bcgsc.ca 37 11 49002943 49002943 + RNA SNP A G G novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . . . . . CAGAACATCTCCT . 83 19 115 0 . . ANKRD13D 338692 bcgsc.ca 37 11 67068427 67068427 + Missense_Mutation SNP G T T rs368733850 alternate_allele TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . ANKRD13D . . . . CCAGCCGTGCCTC . 23 3 35 0 . 71 OR6X1 390260 bcgsc.ca 37 11 123624820 123624820 + Missense_Mutation SNP C T T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . OR6X1 NM_001005188 exon1 c.G407A p.S136N AGTTTGCTGGTCA . 17 3 28 0 . 54 TMEM260 54916 bcgsc.ca 37 14 57114069 57114069 + Missense_Mutation SNP C A A novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . . NM_017799 exon16 c.C1978A p.P660T GCAGATCCTGAAG . 32 3 51 0 . . KIAA0317 0 bcgsc.ca 37 14 75179687 75179687 + Silent SNP G T T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . KIAA0317 . . . . TGGGAAGGGGCGG . 36 4 54 0 . 68 ZNF271 10778 bcgsc.ca 37 18 32889539 32889539 + RNA SNP G T T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . ZNF271 . . . . ACTGAAGGACAGG . 22 3 40 0 . 16 PRKCSH 5589 bcgsc.ca 37 19 11560245 11560245 + Splice_Site SNP T G G novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . PRKCSH NM_002743 exon17 c.1603+2T>G . CAGAGGTGGGCGG . 16 12 22 2 . 55 CSE1L 1434 bcgsc.ca 37 20 47712955 47712955 + Missense_Mutation SNP G T T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . CSE1L NM_001316 exon25 c.G2896T p.A966S CAGGCAGCCAGTG . 49 4 30 0 . 83 CARD10 29775 bcgsc.ca 37 22 37888537 37888537 + Missense_Mutation SNP G T T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . CARD10 NM_014550 exon18 c.C2656A p.L886M GGCACAGTTCCTC . 59 4 56 0 . 55 GPC3 2719 bcgsc.ca 37 X 133119350 133119350 + Missense_Mutation SNP G T T novel TCGA-W5-AA31-01A-11D-A417-09 TCGA-W5-AA31-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d14106d7-8efd-42d5-b203-5e2ede2aa7d8 619671b3-2530-4b47-bd7a-eaaa2c6e9e23 . GPC3 NM_001164617 exon1 c.C127A p.Q43K GTCTCTGGAAGAA . 57 4 60 0 . 88