Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL NTotCov_SOL NVarCov_SOL dbSNPPopFreq COSMIC_Gene_Freq RSC1A1 6248 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 15987540 15987540 + Frame_Shift_Del DEL A A - novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_006511 exon1 c.1176delT p.I392fs AGTATTAAAGACC . 38 14 41 0 . . ELF3 1999 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 201980321 201980334 + Frame_Shift_Del DEL CAGCTCGGAGGACT CAGCTCGGAGGACT - novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 CAGCTCGGAGGACT CAGCTCGGAGGACT . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_004433 exon2 c.56_69del p.19_23del GATGTACAGCTCG . 29 10 28 0 . . FNBP4 23360 hgsc.bcm.edu;broad.mit.edu 37 11 47754203 47754203 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_015308 exon11 c.G1706A p.R569Q CCTTCCCGCCAGT . 98 4 69 0 . . SLC26A7 115111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 92346590 92346590 + Missense_Mutation SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_134266 exon6 c.G710A p.S237N TGCTGAGCATTGT . 158 68 62 0 . . UNC45B 146862 hgsc.bcm.edu 37 17 33504088 33504088 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 UNC45B,NS,carcinoma,0,1 UNC45B NM_173167 exon16 c.C2084T p.A695V AGGCAGCCCACGC . 47 2 28 0 . 0 SF3A2 8175 hgsc.bcm.edu 37 19 2248134 2248134 + Silent SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_007165 exon9 c.G984A p.G328G CTCTGGGGTCCAC . 23 4 12 0 . . KATNAL2 83473 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 44579415 44579415 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_031303 exon2 c.C71T p.T24I CAGACACAGGTAC . 60 23 45 0 . . ADAM32 203102 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 39114753 39114753 + Missense_Mutation SNP C C A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_145004 exon19 c.C2053A p.L685I TGGCTTCTAGGTT . 98 10 38 0 . . LCN12 286256 hgsc.bcm.edu 37 9 139846784 139846784 + Missense_Mutation SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_178536 exon1 c.G5T p.R2M GGATGAGGCTGCT . 65 3 55 0 . . FTH1 2495 hgsc.bcm.edu 37 11 61734852 61734852 + Missense_Mutation SNP C C A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 FTH1,NS,malignant_melanoma,0,1 FTH1 NM_002032 exon1 c.G46T p.D16Y CTGAGTCCTGGTG . 43 2 22 0 . 0 APPL1 26060 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 57272144 57272144 + Missense_Mutation SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_012096 exon4 c.G285T p.E95D AGATGAGGTAAAC . 71 4 57 0 . . PRSS58 136541 hgsc.bcm.edu;ucsc.edu 37 7 141954901 141954901 + Missense_Mutation SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_001001317 exon4 c.C410A p.T137N CTCCAGGTAGAGA . 26 4 11 0 . . ISYNA1 51477 hgsc.bcm.edu 37 19 18548727 18548727 + Silent SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_001170938 exon2 c.C63T p.I21I CGCCTCGATGGCC . 27 4 13 0 . . GCNT1 2650 hgsc.bcm.edu 37 9 79117954 79117954 + Missense_Mutation SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 GCNT1,NS,malignant_melanoma,0,2 GCNT1 NM_001490 exon4 c.G657T p.M219I TGGTATGGATTTT . 43 2 37 0 . 0 POLR3B 55703 hgsc.bcm.edu 37 12 106853126 106853126 + Missense_Mutation SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_018082 exon22 c.G2550T p.Q850H ACCACAGTACAAA . 88 4 31 0 . . KCNU1 157855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 36793039 36793039 + Silent SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_001031836 exon27 c.G3051T p.V1017V GTTTGTGATCACC . 57 9 24 0 . . CPT1C 126129 hgsc.bcm.edu 37 19 50214055 50214055 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 CPT1C,caecum,carcinoma,-1,1 CPT1C NM_001199752 exon16 c.C1807T p.R603W ACGGTGCGGTCTT . 33 2 25 0 . -1 BBS2 583 hgsc.bcm.edu 37 16 56535283 56535283 + Missense_Mutation SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 BBS2,NS,carcinoma,+1,1 BBS2 NM_031885 exon10 c.C1207T p.R403C AAATGCGTAATTC . 73 3 30 0 . +1 TTC9B 148014 hgsc.bcm.edu 37 19 40722126 40722126 + Missense_Mutation SNP T T C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 TTC9B,NS,carcinoma,0,1 TTC9B NM_152479 exon3 c.A664G p.S222G GGAGGCTGCAACG . 37 2 27 0 . 0 XIRP2 129446 hgsc.bcm.edu 37 2 168099965 168099965 + Missense_Mutation SNP A A G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 XIRP2,NS,carcinoma,0,2 XIRP2 NM_152381 exon9 c.A2063G p.D688G GGGGGGATGTCAA . 40 3 14 0 . 0 SHKBP1 92799 hgsc.bcm.edu 37 19 41086736 41086736 + Silent SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_138392 exon9 c.G738T p.R246R AGCCCGGGTGCAT . 65 4 42 0 . . FBN2 2201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 127641262 127641262 + Missense_Mutation SNP C C A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_001999 exon44 c.G5615T p.G1872V TAACTACCAGGAC . 45 22 23 0 . . SCP2D1 140856 hgsc.bcm.edu 37 20 18794574 18794574 + Silent SNP C C T rs142475609 TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 C20orf79,NS,malignant_melanoma,0,1 C20orf79 NM_178483 exon1 c.C115T p.L39L CTAGAGCTGTCAG . 36 3 15 0 . 0 PLCB1 23236 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 8703060 8703060 + Missense_Mutation SNP A A C rs138851178 bycluster;alternate_allele TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_015192 exon15 c.G1573C p.E525Q TCTTCAATGGATG . 104 42 62 0 . . MRPS35 60488 hgsc.bcm.edu 37 12 27863845 27863845 + Silent SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 MRPS35,NS,neuroblastoma,0,1 MRPS35 NM_001190864 exon1 c.C69T p.S23S ATTCTCCACTGCC . 73 3 30 0 . 0 KCNB2 9312 hgsc.bcm.edu;broad.mit.edu 37 8 73849914 73849914 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 KCNB2,NS,carcinoma,0,1 KCNB2 NM_004770 exon3 c.C2324T p.A775V TTTCAGCGCCTTG . 28 3 9 0 . 0 RHOBTB3 22836 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 95099223 95099223 + Missense_Mutation SNP T T G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_014899 exon7 c.T1060G p.W354G TTTCAGTGGGAAG . 128 7 46 0 . . PBRM1 55193 hgsc.bcm.edu;broad.mit.edu 37 3 52651496 52651496 + Nonsense_Mutation SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 PBRM1_ENST00000296302,NS,carcinoma,0,1 PBRM1_ENST00000296302 NM_018313 exon15 c.C1600T p.R534X GCTCTCGAGCTTC . 24 3 20 0 . 0 CCDC102B 79839 hgsc.bcm.edu 37 18 66721302 66721302 + Missense_Mutation SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 CCDC102B,NS,malignant_melanoma,0,2 CCDC102B NM_001093729 exon10 c.G1470T p.Q490H GCTCCAGAGGTCT . 41 2 36 0 . 0 NPY1R 4886 hgsc.bcm.edu 37 4 164246817 164246817 + Silent SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 NPY1R,NS,carcinoma,0,1 NPY1R NM_000909 exon3 c.C793T p.L265L AGAGCAGCATGAT . 28 2 17 0 . 0 FRG1B 284802 hgsc.bcm.edu 37 20 29628423 29628423 + RNA SNP T T G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . TCACTTTAAAGAT . 174 7 103 0 . . CYP4B1 1580 hgsc.bcm.edu 37 1 47264867 47264867 + Silent SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 CYP4B1,NS,carcinoma,0,1 CYP4B1 NM_000779 exon1 c.G114A p.T38T GCAGACGTTGGCT . 29 2 20 0 . 0 DAOA 267012 hgsc.bcm.edu;ucsc.edu 37 13 106142521 106142521 + RNA SNP G G C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . TGTCTGGGACCCA . 24 12 10 0 . . DPYSL4 10570 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 134006179 134006179 + Missense_Mutation SNP T T C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_006426 exon3 c.T146C p.L49P AAAACCTCATCGT . 45 5 37 0 . . SF3A2 8175 hgsc.bcm.edu 37 19 2248149 2248149 + Silent SNP T T C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 SF3A2,colon,carcinoma,0,1 SF3A2 NM_007165 exon9 c.T999C p.A333A CCCAGCTCCTGGA . 24 7 13 1 . 0 TMEFF2 23671 hgsc.bcm.edu 37 2 192815056 192815056 + Missense_Mutation SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 TMEFF2,colon,carcinoma,0,1 TMEFF2 NM_016192 exon10 c.C1106A p.A369E GTGGACGCTCTTG . 35 2 18 0 . 0 KIAA0922 23240 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 4 154525556 154525556 + Missense_Mutation SNP T T G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_001131007 exon25 c.T3392G p.L1131W CAGACTTGCCAGA . 60 6 42 0 . . GANC 2595 hgsc.bcm.edu 37 15 42644326 42644326 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 GANC,colon,carcinoma,0,1 GANC NM_198141 exon24 c.C2734T p.R912C GAGGTCCGCATCA . 19 2 19 0 . 0 TTN-AS1 100506866 hgsc.bcm.edu;ucsc.edu 37 2 179448317 179448317 + RNA SNP A A G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . TATAATACTCAGC . 44 24 20 0 . . CHL1 10752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 440009 440009 + Missense_Mutation SNP C C G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_006614 exon25 c.C3194G p.T1065S TAATGACTAAGAA . 57 40 35 0 . . NEURL2 140825 hgsc.bcm.edu 37 20 44518856 44518856 + RNA SNP A A C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . ACACTGAGCCAGG . 19 6 11 0 . . UBE3B 89910 hgsc.bcm.edu 37 12 109927743 109927743 + Silent SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 UBE3B,bladder,carcinoma,+1,1 UBE3B NM_001270451 exon8 c.G564T p.A188A ACCAGCGATGAAC . 46 2 19 0 . +1 WIZ 58525 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 15536231 15536231 + Missense_Mutation SNP A A C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_021241 exon5 c.T1430G p.L477R AGGCTGAGCTCAC . 41 16 13 0 . . FAM86FP 653113 hgsc.bcm.edu 37 12 8388423 8388423 + RNA SNP C C A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . ATAAACCATGACA . 68 9 49 0 . . SCN4A 6329 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 62020345 62020345 + Nonsense_Mutation SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_000334 exon23 c.C4129T p.Q1377X GGCTCTGGTTGTC . 27 5 17 0 . . FMNL1 752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 43322776 43322776 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_005892 exon22 c.C2885T p.T962M GCAAGACGGCTCA . 37 9 26 0 . . MMACHC 25974 hgsc.bcm.edu 37 1 45966021 45966021 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_015506 exon1 c.C17T p.A6V AAGTCGCAGAGCT . 88 4 45 0 . . VCP 7415 hgsc.bcm.edu 37 9 35060888 35060888 + Silent SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_007126 exon12 c.G1392A p.L464L TTCCCGCAGTGCT . 85 3 45 0 . . CAPN12 147968 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 39229091 39229091 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_144691 exon7 c.G857A p.G286D ACGCAGCCCCATG . 74 8 62 0 . . CHD6 84181 hgsc.bcm.edu 37 20 40161871 40161871 + Silent SNP C C T rs61756303 TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_032221 exon3 c.G372A p.P124P CTCTTTCGGTTCT . 100 4 46 0 . . NLRX1 79671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 119050623 119050623 + Silent SNP C C G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_024618 exon7 c.C1893G p.L631L GCTTCTCTCTGCC . 19 7 17 0 . . ME1 4199 hgsc.bcm.edu 37 6 84061833 84061833 + Silent SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 ME1,mucosal,malignant_melanoma,0,1 ME1 NM_002395 exon4 c.C388A p.R130R GCCCTCGATCGTG . 25 2 12 0 . 0 BAP1 8314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 52439916 52439916 + Missense_Mutation SNP T T G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_004656 exon10 c.A796C p.T266P GCTGTGTTACTCT . 18 11 17 0 . . ELANE 1991 hgsc.bcm.edu 37 19 853306 853306 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_001972 exon3 c.C269T p.S90L ACCTCTCGCGGCG . 9 5 6 0 . . RPS6KA2 6196 hgsc.bcm.edu 37 6 166918040 166918040 + Missense_Mutation SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 RPS6KA2_ENST00000503859,NS,carcinoma,+1,2 RPS6KA2_ENST00000503859 NM_001006932 exon7 c.C544A p.H182N GGAGATGGTCTAA . 38 2 27 0 . +1 TSG101 7251 hgsc.bcm.edu 37 11 18536390 18536390 + Splice_Site SNP T T A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 TSG101,NS,carcinoma,0,1 TSG101 NM_006292 exon5 c.194-2A>T . ATTACCTGAAAAA . 84 4 45 0 . 0 PLXNA4 91584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 131888134 131888134 + Missense_Mutation SNP C C G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_020911 exon11 c.G2343C p.L781F GACTGTCAACTCC . 48 11 32 0 . . CSN1S2AP 286828 hgsc.bcm.edu 37 4 70939774 70939774 + RNA SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . AATTATGTAGAGA . 71 4 35 0 . . RNU5F-1 26828 hgsc.bcm.edu 37 1 220269438 220269438 + RNA SNP T T A rs201594568 TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . TTTTTTTAAAACA . 84 4 31 0 0.001 . SF3A2 8175 hgsc.bcm.edu 37 19 2248143 2248143 + Silent SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_007165 exon9 c.C993T p.P331P CCACCCCCCAGCT . 25 7 12 0 . . BAP1 8314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 52439930 52439930 + Splice_Site SNP T T C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 BAP1,colon,carcinoma,0,3 BAP1 NM_004656 exon11 c.784-2A>G . ATCAGCTAACAAC . 20 12 16 0 . 0 RNF14 9604 hgsc.bcm.edu 37 5 141353306 141353306 + Silent SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 RNF14,NS,carcinoma,0,1 RNF14 NM_001201365 exon3 c.C153T p.S51S TGTGAGCGGTTAG . 95 4 48 0 . 0 SSX6 280657 hgsc.bcm.edu 37 X 47972356 47972356 + RNA SNP A A C rs201636851 bycluster TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . GGTTTAACCCCAT . 37 0 15 0 . . SNED1 25992 hgsc.bcm.edu 37 2 241979571 241979571 + Silent SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 SNED1,NS,carcinoma,0,1 SNED1 NM_001080437 exon7 c.C1125T p.C375C TGTGTGCCAGGCC . 39 2 24 0 . 0 CTTNBP2NL 55917 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 112999056 112999056 + Silent SNP A A G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_018704 exon6 c.A942G p.T314T CCAAACAGAGAGT . 20 4 15 0 . . YAF2 10138 hgsc.bcm.edu;bcgsc.ca 37 12 42555512 42555512 + Missense_Mutation SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_001190979 exon4 c.C280T p.P94S TAGGAGGCACAAA . 85 5 32 0 . . ISLR2 57611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 74425467 74425467 + Silent SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 ISLR2,NS,carcinoma,0,1 ISLR2 NM_001130138 exon4 c.G372A p.A124A GAGCGCGCTGCAG . 15 4 17 0 . 0 ZNF99 7652 hgsc.bcm.edu;bcgsc.ca 37 19 22952120 22952120 + Silent SNP A A G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_001080409 exon2 c.T10C p.L4L ATGTCAACGATCC . 91 4 52 0 . . MUC4 4585 hgsc.bcm.edu 37 3 195506579 195506579 + Missense_Mutation SNP T T C rs71291866 alternate_allele TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 MUC4_ENST00000463781,NS,carcinoma,0,1 MUC4_ENST00000463781 NM_018406 exon2 c.A11872G p.T3958A AGGAAGTGTCGGT . 15 5 12 1 . 0 SRPR 6734 hgsc.bcm.edu 37 11 126134923 126134923 + Missense_Mutation SNP T T C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 SRPR,NS,carcinoma,0,1 SRPR NM_003139 exon11 c.A1456G p.M486V GCACCATGGTGCG . 43 2 36 0 . 0 COL5A1 1289 hgsc.bcm.edu 37 9 137582891 137582891 + Silent SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 COL5A1,NS,carcinoma,0,1 COL5A1 NM_000093 exon2 c.G243A p.A81A AGACGCGCAGCTC . 41 3 22 0 . 0 SNORA71B 26776 hgsc.bcm.edu 37 20 37053904 37053904 + RNA SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . GGGAAGCGCTTTC . 76 4 39 0 . . ZCWPW1 55063 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 100014767 100014767 + Missense_Mutation SNP G G A rs370621347 TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 ZCWPW1,NS,carcinoma,0,1 ZCWPW1 NM_001258008 exon6 c.C401T p.A134V GGCTGGGCACAAG . 67 4 35 0 . 0 GNA15 2769 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 3157762 3157762 + Missense_Mutation SNP A A G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_002068 exon6 c.A781G p.I261V GGGACTATCCTGG . 113 7 64 0 . . KIAA1751 85452 hgsc.bcm.edu 37 1 1920371 1920371 + Missense_Mutation SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 KIAA1751,NS,carcinoma,0,1 KIAA1751 NM_001080484 exon3 c.C109A p.L37I GTAGAAGACATTT . 64 2 67 0 . 0 TRAF3IP1 26146 hgsc.bcm.edu 37 2 239242655 239242655 + Nonsense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_015650 exon7 c.C1042T p.R348X AAACGGCGATCCA . 94 3 59 0 . . FLG 2312 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 152283924 152283924 + Silent SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_002016 exon3 c.C3438T p.H1146H CTGCTCGTGGTGG . 110 44 51 0 . . RNU6-76 100873777 hgsc.bcm.edu 37 16 33504517 33504517 + RNA SNP A A G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . CGACAAAGTCATA . 137 24 76 0 . . ADK 132 hgsc.bcm.edu;bcgsc.ca 37 10 76285055 76285055 + Silent SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_006721 exon7 c.G597T p.V199V AAAGGTGGCTCAC . 49 4 26 0 . . NCKAP1L 3071 hgsc.bcm.edu 37 12 54917650 54917650 + Missense_Mutation SNP C C A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_005337 exon20 c.C2066A p.T689K CACTGACAATGAA . 64 4 26 0 . . NUP210 23225 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 13383292 13383292 + Missense_Mutation SNP T T G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_024923 exon23 c.A3184C p.N1062H CTTTATTGGTCAC . 32 19 25 0 . . ASPHD1 253982 hgsc.bcm.edu 37 16 29912808 29912808 + Silent SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_181718 exon1 c.C516T p.G172G GGGTGGCCCAGGC . 117 7 36 0 . . TMEM206 55248 hgsc.bcm.edu 37 1 212538674 212538674 + Silent SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 TMEM206,colon,carcinoma,0,1 TMEM206 NM_001198862 exon9 c.C1119A p.G373G GAAGGCGCCACAG . 40 2 6 0 . 0 CCDC96 257236 hgsc.bcm.edu 37 4 7044539 7044539 + Missense_Mutation SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_153376 exon1 c.C127A p.L43M ACTCCAGCTCCCC . 19 4 10 0 . . DCP1B 196513 hgsc.bcm.edu 37 12 2062323 2062323 + Silent SNP T T C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 .,4 . NM_152640 exon7 c.A783G p.Q261Q CTTCTCTTGCTGC . 35 2 15 0 . 63 CAMK1G 57172 hgsc.bcm.edu 37 1 209785272 209785272 + Missense_Mutation SNP C C A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 CAMK1G,NS,malignant_melanoma,0,1 CAMK1G NM_020439 exon11 c.C1051A p.P351T AGCTCCCCTGAGA . 42 2 37 0 . 0 FMN2 56776 hgsc.bcm.edu;broad.mit.edu 37 1 240371625 240371625 + Silent SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_020066 exon5 c.G3513A p.A1171A CGGAGCGGGCATA . 124 5 69 0 . . FMN2 56776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 240374462 240374462 + Nonsense_Mutation SNP T T A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_020066 exon6 c.T3992A p.L1331X AGGAATTATTTTC . 56 22 26 0 . . POLA2 23649 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 65046272 65046272 + Missense_Mutation SNP A A G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_002689 exon6 c.A533G p.Q178R TAGCACAGGGAGT . 56 4 50 0 . . LRP1 4035 hgsc.bcm.edu;ucsc.edu 37 12 57586977 57586977 + Missense_Mutation SNP G G A rs143045870 TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_002332 exon46 c.G7574A p.R2525Q CTTGCCGAGCACA . 24 11 13 0 0.000 . LTN1 26046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 30332965 30332965 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_015565 exon12 c.G2365A p.E789K ATTTCTCACCAAG . 74 31 50 0 . . RYR1 6261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 39006851 39006851 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_001042723 exon65 c.C9679T p.R3227W CGGGAGCGGGCCA . 89 42 56 0 . . TNFRSF14 8764 hgsc.bcm.edu 37 1 2493248 2493248 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_003820 exon6 c.C688T p.P230S AGAAAGCCAAGGG . 76 4 73 0 . . SLC24A1 9187 hgsc.bcm.edu 37 15 65918176 65918176 + Silent SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 .,1 . NM_004727 exon2 c.C1758T p.S586S GGAGAGCCTGCTG . 33 3 23 0 . 58 GPR98 84059 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 89999578 89999578 + Missense_Mutation SNP T T A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_032119 exon35 c.T8252A p.F2751Y TCAATTTTGCTAA . 124 6 74 0 . . PHIP 55023 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 79679836 79679836 + Missense_Mutation SNP G G C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_017934 exon26 c.C3052G p.L1018V AGCAAAGGGTAGG . 67 47 43 0 . . SPAG16 79582 hgsc.bcm.edu 37 2 214794782 214794782 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_024532 exon12 c.C1313T p.A438V GCCGCGCAGTGTG . 81 4 59 0 . . PAX3 5077 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 223161877 223161877 + Missense_Mutation SNP G G T rs104893652 bycluster;alternate_allele TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_181457 exon2 c.C141A p.N47K CCTGCCGTTGATA . 43 25 23 0 . . TTC14 151613 hgsc.bcm.edu 37 3 180320910 180320910 + Splice_Site SNP A A T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_001042601 exon3 c.287-2A>T . TTTTTTAGATCAT . 75 6 40 0 . . CLTCL1 8218 hgsc.bcm.edu 37 22 19213069 19213069 + Missense_Mutation SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_001835 exon13 c.C2035A p.L679I GCTGAAGGTTCTG . 26 4 17 0 . . CACNA1G-AS1 253962 hgsc.bcm.edu 37 17 48639364 48639364 + RNA SNP A A G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . AGCTGGACGCCCT . 108 3 66 0 . . C1orf198 84886 hgsc.bcm.edu 37 1 230979495 230979495 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 C1orf198,NS,carcinoma,0,1 C1orf198 NM_032800 exon3 c.G532A p.A178T CCAGGGCGTCCAG . 48 3 14 0 . 0 IREB2 3658 hgsc.bcm.edu 37 15 78765723 78765723 + Missense_Mutation SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_004136 exon8 c.G1023T p.K341N TACAAAGGTAAGT . 84 3 60 0 . . TICAM1 148022 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 4816516 4816516 + Missense_Mutation SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_182919 exon2 c.C1874T p.P625L CACCCCGGCCAAG . 48 24 23 0 . . ZFP1 162239 hgsc.bcm.edu 37 16 75203971 75203971 + Missense_Mutation SNP G G T rs375737032 alternate_allele TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 ZFP1,NS,carcinoma,0,1 ZFP1 NM_153688 exon4 c.G963T p.E321D GGGGGAGAAACGC . 84 4 41 0 . 0 NID1 4811 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 236205367 236205367 + Silent SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_002508 exon4 c.C978T p.Y326Y CACACTGTATGTG . 24 10 10 0 . . ECI2 10455 hgsc.bcm.edu;broad.mit.edu 37 6 4133832 4133832 + Missense_Mutation SNP T T C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 ECI2_ENST00000380118,NS,malignant_melanoma,0,2 ECI2_ENST00000380118 NM_206836 exon2 c.A164G p.K55R GGATCCTTTTTCA . 89 4 45 1 . 0 YTHDC1 91746 hgsc.bcm.edu 37 4 69179995 69179995 + Missense_Mutation SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 YTHDC1,caecum,carcinoma,0,1 YTHDC1 NM_001031732 exon17 c.C2006A p.A669D ACAACAGCTTGTG . 30 2 13 0 . 0 TRIM36 55521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 114506912 114506912 + Missense_Mutation SNP T T C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_001017397 exon2 c.A71G p.D24G CTCCAATCCGGCA . 38 4 30 0 . . MPDZ 8777 hgsc.bcm.edu 37 9 13176150 13176150 + Silent SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 MPDZ_ENST00000541718,NS,carcinoma,0,2 MPDZ_ENST00000541718 NM_003829 exon20 c.C2916A p.P972P TGAATCGGGTAGC . 59 3 34 0 . 0 ZDHHC17 23390 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 77208948 77208948 + Missense_Mutation SNP A A G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_015336 exon6 c.A566G p.N189S ATCAGAATGGAAT . 109 18 44 0 . . HID1 283987 hgsc.bcm.edu;bcgsc.ca 37 17 72950350 72950350 + Missense_Mutation SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_030630 exon14 c.C1747T p.R583W GTGTCCGCCGGCG . 57 4 36 0 . . NYAP2 57624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 226447614 226447614 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_020864 exon4 c.C1481T p.T494I TGAACACCTACGG . 45 17 25 0 . . GCM1 8521 hgsc.bcm.edu 37 6 52993290 52993290 + Missense_Mutation SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 GCM1,rectum,carcinoma,0,1 GCM1 NM_003643 exon6 c.C1025A p.P342Q TCCAATGGAAGCT . 56 3 24 0 . 0 ACTB 60 hgsc.bcm.edu 37 7 5567663 5567663 + Missense_Mutation SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_001101 exon5 c.C956T p.A319V GCCAGGGCAGTGA . 53 4 37 0 . . PCDHA4 56144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140188641 140188641 + Silent SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 PCDHA4_ENST00000530339,NS,carcinoma,0,4 PCDHA4_ENST00000530339 NM_031500 exon1 c.C1869T p.R623R GTTCCGCGTGGGG . 80 8 44 0 . 0 SLC22A4 6583 hgsc.bcm.edu 37 5 131630429 131630429 + Silent SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_003059 exon1 c.G120T p.V40V AGTCGTGTTCCTG . 47 4 19 0 . . PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A T rs121913279 bycluster TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 PIK3CA_ENST00000263967,NS,adenocarcinoma,0,2044 PIK3CA_ENST00000263967 NM_006218 exon21 c.A3140T p.H1047L ATGCACATCATGG . 30 12 12 0 . 0 YARS 8565 hgsc.bcm.edu 37 1 33246690 33246690 + Silent SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 YARS,caecum,carcinoma,0,1 YARS NM_003680 exon10 c.C1099A p.R367R CCAGCCGGGATGG . 50 2 34 0 . 0 AMBRA1 55626 hgsc.bcm.edu 37 11 46564499 46564499 + Silent SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 AMBRA1_ENST00000458649,colon,carcinoma,0,2 AMBRA1_ENST00000458649 NM_001267783 exon8 c.G798A p.S266S CGTTGACGAGGCC . 32 2 24 0 . 0 ATP13A3 79572 hgsc.bcm.edu 37 3 194167665 194167665 + Silent SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_024524 exon13 c.C1488T p.C496C GTCAAAGCAAACA . 86 4 22 0 . . STAB2 55576 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 104126866 104126866 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_017564 exon51 c.C5366T p.A1789V TCCATGCCCTACC . 15 8 14 0 . . VAPB 9217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 57016107 57016107 + Missense_Mutation SNP C C A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_004738 exon5 c.C541A p.Q181K GAAGTTCAGAGGC . 56 27 38 0 . . HAL 3034 hgsc.bcm.edu 37 12 96379885 96379885 + Missense_Mutation SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 HAL,NS,malignant_melanoma,0,2 HAL NM_001258334 exon13 c.C1105T p.R369W GTGACCGAAACCG . 58 4 35 0 . 0 OR13F1 138805 hgsc.bcm.edu 37 9 107267255 107267255 + Missense_Mutation SNP T T C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_001004485 exon1 c.T712C p.F238L AAAGCCTTTTCAA . 52 4 32 0 . . OR2G2 81470 hgsc.bcm.edu 37 1 247752208 247752208 + Nonsense_Mutation SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 OR2G2,NS,carcinoma,0,1 OR2G2 NM_001001915 exon1 c.G547T p.E183X ATCTGCGAGGTCC . 42 2 24 0 . 0 FAM65A 79567 hgsc.bcm.edu 37 16 67572725 67572725 + Silent SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_001193523 exon3 c.G315T p.L105L GGGCCTGACGTGA . 97 4 57 0 . . POU4F2 5458 hgsc.bcm.edu 37 4 147560457 147560457 + Silent SNP T T C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_004575 exon1 c.T165C p.G55G TGGTGGTGGCGGC . 16 0 6 0 . . ARID1A 8289 broad.mit.edu 37 1 27099298 27099318 + Splice_Site DEL TGGAGCAGGAGCAATTCAGTT TGGAGCAGGAGCAATTCAGTT - novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . ARID1A NM_139135 exon14 c.3540_3555del p.1180_1185del TCACTCTGGAGCA . 17 3 12 0 . 842 NBPF1 55672 broad.mit.edu 37 1 16892237 16892237 + Missense_Mutation SNP A A C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . TGAATAACATCTA . 48 6 50 0 . . MIR548AP 0 broad.mit.edu 37 1 84259365 84259366 + RNA DEL TT TT - rs142355605 bycluster TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . AGGTCATTTTTTT . 12 5 4 0 . . ARFGAP2 84364 broad.mit.edu 37 11 47188426 47188426 + Missense_Mutation SNP C C T rs200794218 TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . ARFGAP2 NM_032389 exon13 c.G1217A p.R406Q TCCCTCCGGTTTG . 28 3 13 0 . 43 FAM111B 374393 broad.mit.edu 37 11 58893430 58893430 + Silent SNP A A G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . FAM111B NM_198947 exon4 c.A1860G p.V620V TAATGTATACTGT . 75 3 43 1 . 84 ORAI1 84876 broad.mit.edu 37 12 122079347 122079347 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . ORAI1 NM_032790 exon2 c.C710T p.A237V AGGCAGCTGCCAT . 47 3 42 0 . 66 IRF2BPL 64207 broad.mit.edu 37 14 77493648 77493650 + In_Frame_Del DEL GCG GCG - rs371633333 bycluster TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . IRF2BPL NM_024496 exon1 c.486_488del p.162_163del ACCGCAGCGGCGG . 16 6 4 0 . 40 KHNYN 23351 broad.mit.edu 37 14 24900976 24900976 + Frame_Shift_Del DEL C C - novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . KHNYN NM_015299 exon3 c.509delC p.S170fs TGCAGTCCCCGGG . 6 2 17 0 . 46 DVL2 1856 broad.mit.edu 37 17 7129307 7129307 + Silent SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . DVL2 NM_004422 exon15 c.G2088A p.V696V AGGCTGCACTGCT . 32 3 26 0 . 49 POTEC 388468 broad.mit.edu 37 18 14513734 14513734 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 POTEC,NS,carcinoma,0,2 POTEC NM_001137671 exon10 c.G1460A p.G487E GATATTCCAGTGT . 401 4 183 1 . 129 LOC728323 0 broad.mit.edu 37 2 243037116 243037116 + RNA SNP T T A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . GAAGAATTGTGAA . 85 9 35 1 . . ANKRD30BL 554226 broad.mit.edu 37 2 132919070 132919070 + Missense_Mutation SNP G G C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . ANKRD30BL . . . . TTCTTCGCATCTC . 74 6 38 1 . 36 ANKRD36BP2 0 broad.mit.edu;ucsc.edu 37 2 89076054 89076054 + RNA SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . AAAGTAGCCATAA . 86 9 41 1 . . ANKRD36BP2 0 broad.mit.edu 37 2 89076056 89076056 + RNA SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . AGTAGCCATAAGA . 86 5 42 1 . . . 400986 broad.mit.edu 37 2 96555601 96555601 + Missense_Mutation SNP T T C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . CAGAATTTTCCTT . 138 7 83 0 . . BAGE 85319 broad.mit.edu 37 21 11066244 11066249 + RNA DEL CAAAAA CAAAAA - rs201145462 alternate_allele TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . CCATCTCAAAAAC . 6 2 5 0 . . ETV5 2119 broad.mit.edu 37 3 185798929 185798929 + Missense_Mutation SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . ETV5 NM_004454 exon6 c.C268T p.R90W GCTCCCGTTTGAT . 39 3 22 0 . 106 DPY19L2P2 0 broad.mit.edu 37 7 102825947 102825947 + RNA SNP A A G novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . CTTGACACTTGCC . 69 5 26 0 . . . 0 broad.mit.edu 37 7 65948385 65948387 + RNA DEL AAA AAA - rs370057886 TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . AACAACAAAAAAA . 9 5 4 0 . . TUBBP5 0 broad.mit.edu 37 9 141069495 141069495 + RNA SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . TGGCCACGAGGGA . 41 7 43 2 . . COX1 4512 broad.mit.edu 37 MT 6825 6825 + Missense_Mutation SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . ENST00000361624 exon1 c.G922A p.A308T ACCTCCGCTACCA . 14 12 27 0 . . CNKSR2 22866 broad.mit.edu 37 X 21534642 21534642 + Missense_Mutation SNP G G C novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . CNKSR2 NM_001168647 exon9 c.G850C p.E284Q CTACGAGAGGACC . 109 4 45 1 . 158 OBSCN 84033 ucsc.edu 37 1 228503595 228503595 + Missense_Mutation SNP G G T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . OBSCN NM_001271223 exon61 c.G15931T p.G5311C CTGGAGGGCGGCG . 40 4 39 0 . 2142 ITGA8 8516 ucsc.edu 37 10 15649688 15649688 + Silent SNP G G A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . ITGA8 NM_003638 exon17 c.C1752T p.I584I GTAAACGATGAAA . 37 4 17 0 . 230 C2CD4A 145741 ucsc.edu;bcgsc.ca 37 15 62359940 62359940 + Missense_Mutation SNP C C T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . C2CD4A NM_207322 exon2 c.C128T p.P43L TCACTCCGGACCG . 42 4 28 0 . 3 . 647696 bcgsc.ca 37 2 133020576 133020576 + RNA SNP G A A rs78170507 TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . CTATTAGGGCGAG . 89 9 47 1 G|0.500;A|0.500 . STRADB 55437 bcgsc.ca 37 2 202344886 202344886 + Silent SNP C T T rs146098224 TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . STRADB NM_018571 exon12 c.C1245T p.Y415Y CTCATACTGGGAA . 81 7 39 0 . 33 . 0 bcgsc.ca 37 4 49552258 49552258 + RNA SNP A G G rs10440605 TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . TAGTGAACTACAA . 241 42 152 7 . . MUC21 394263 bcgsc.ca 37 6 30954572 30954572 + Missense_Mutation SNP C T T rs146037191 bycluster TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 MUC21,NS,malignant_melanoma,0,2 MUC21 NM_001010909 exon2 c.C620T p.A207V GTGGGGCCAGCAC . 99 8 72 2 C|0.998;T|0.002 98 GARS 2617 bcgsc.ca 37 7 30662040 30662040 + Silent SNP C T T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . GARS NM_002047 exon12 c.C1575T p.C525C TGAGTGCTACATT . 58 4 41 0 . 52 ABCB1 5243 bcgsc.ca 37 7 87229482 87229482 + Missense_Mutation SNP G T T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . ABCB1 NM_000927 exon3 c.C19A p.R7S CATTGCGGTCCCC . 54 4 28 0 . 263 LOC642236 0 bcgsc.ca 37 9 68433564 68433564 + RNA SNP C A A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . CATTTTCCCCTAA . 207 9 141 3 . . MIA2 117153 bcgsc.ca 37 14 39703322 39703322 + Missense_Mutation SNP G A A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . MIA2 NM_054024 exon1 c.G4A p.A2T AGCATGGCAAAAT . 52 4 57 0 . 82 . 0 bcgsc.ca 37 17 67945017 67945017 + RNA SNP C A A novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . . . . . TTGGTGCAAATGT . 71 6 43 0 . . XBP1 7494 bcgsc.ca 37 22 29195030 29195030 + Silent SNP C T T novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . XBP1 . . . . TTTGACCTTAAGT . 22 4 27 0 . 37 KIAA0922 23240 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 4 154525558 154525559 + Missense_Mutation DNP CC CC AA novel TCGA-4G-AAZT-01A-11D-A417-09 TCGA-4G-AAZT-10A-01D-A41A-09 CC CC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 24c3dc90-d1f2-4256-9909-0d0c939c178f e75e6102-170d-49e4-89e6-7687cad1f6b6 . . NM_001131007 exon25 c.C3395A p.P1132K ACTTGCCAGAAAT . 58 6 39 0 . .