Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL NTotCov_SOL NVarCov_SOL dbSNPPopFreq COSMIC_Gene_Freq KRCC1 51315 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 88328025 88328027 + In_Frame_Del DEL TAA TAA - novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 TAA TAA . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_016618 exon4 c.57_59del p.19_20del GTACTTTAATATA . 43 10 32 0 . . IFRD1 3475 hgsc.bcm.edu 37 7 112102177 112102178 + Frame_Shift_Ins INS - - A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 - - . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_001007245 exon8 c.740_741insA p.A247fs TTCTTGCATGGAC . 85 18 102 0 . . CHMP1A 5119 hgsc.bcm.edu 37 16 89712424 89712425 + Frame_Shift_Ins INS - - CCTT novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 - - . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_001083314 exon6 c.621_622insAAGG p.G207fs ACAGGAGCCTTCC . 89 12 99 0 . . SNX9 51429 hgsc.bcm.edu 37 6 158288657 158288716 + Frame_Shift_Del DEL ACAAATCCGGTAAGAGAACTGTACATTCGAGTCTGATTGTCCCATGTGGACTTATTTTTA ACAAATCCGGTAAGAGAACTGTACATTCGAGTCTGATTGTCCCATGTGGACTTATTTTTA - novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 ACAAATCCGGTAAGAGAACTGTACATTCGAGTCTGATTGTCCCATGTGGACTTATTTTTA ACAAATCCGGTAAGAGAACTGTACATTCGAGTCTGATTGTCCCATGTGGACTTATTTTTA . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_016224 exon2 c.90_99del p.30_33del ACAATCACAAATC . 94 0 71 0 . . FKRP 79147 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 47258782 47258782 + Silent SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_024301 exon4 c.G75A p.S25S TGTCTCGTGGCTG . 78 15 110 0 . . GZF1 64412 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 23349409 23349409 + Silent SNP T T C novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_022482 exon3 c.T1470C p.P490P AAGACCTTTTATG . 87 36 112 0 . . PEX11B 8799 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 145518133 145518133 + Missense_Mutation SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_003846 exon3 c.G235A p.D79N CTATCAGATGTTG . 51 17 48 0 . . CPS1 1373 hgsc.bcm.edu 37 2 211464283 211464283 + Missense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 CPS1,NS,carcinoma,0,1 CPS1 NM_001122633 exon15 c.G1565T p.C522F TGAACTGTGGTGA . 42 2 40 0 . 0 RTBDN 83546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 12939521 12939521 + Silent SNP T T C novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_001270440 exon5 c.A411G p.L137L CCCCAATAGCCGC . 23 7 36 0 . . MED16 10025 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 875282 875282 + Missense_Mutation SNP T T C novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_005481 exon10 c.A1733G p.D578G AGCCGGTCGCCGG . 89 28 105 0 . . DUSP18 150290 hgsc.bcm.edu 37 22 31059695 31059695 + Missense_Mutation SNP C C T rs200346696 bycluster TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 DUSP18,caecum,carcinoma,0,1 DUSP18 NM_152511 exon2 c.G296A p.R99H AAAGTACGGCCCT . 34 3 40 0 0.001 0 OTUD7A 161725 hgsc.bcm.edu 37 15 31794022 31794022 + Missense_Mutation SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 OTUD7A,NS,malignant_melanoma,0,1 OTUD7A NM_130901 exon8 c.G1021A p.G341R TCCCTCCGAATGG . 34 2 41 0 . 0 BMP7 655 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 55777538 55777538 + Silent SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_001719 exon3 c.G753A p.T251T ATCCAGCGTCTCC . 21 4 23 0 . . PARP4 143 hgsc.bcm.edu 37 13 25064843 25064843 + Missense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 PARP4,NS,carcinoma,0,1 PARP4 NM_006437 exon10 c.C1177A p.L393I CCCTGAGAAATTC . 70 3 106 0 . 0 RRN3P1 730092 hgsc.bcm.edu 37 16 21821976 21821976 + RNA SNP C C A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . TGGATACAAAAAA . 30 4 37 0 . . CADM4 199731 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 44130107 44130107 + Missense_Mutation SNP C C A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_145296 exon6 c.G711T p.E237D GTCTCCCTCCCTC . 48 11 54 0 . . COL20A1 57642 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 61944199 61944199 + Silent SNP C C A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_020882 exon16 c.C1989A p.V663V TGCAGTCCAGCTG . 34 9 32 0 . . TTC28 23331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 28394632 28394632 + Missense_Mutation SNP A A G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_001145418 exon16 c.T5015C p.F1672S GAGTAGAAGGCAT . 35 7 36 0 . . FAM5C 339479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 190068073 190068073 + Missense_Mutation SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_199051 exon8 c.G1376A p.R459H CCGCAGCGGGTGC . 16 6 19 0 . . NT5DC3 51559 hgsc.bcm.edu;bcgsc.ca 37 12 104171615 104171615 + Missense_Mutation SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_001031701 exon14 c.G1639A p.A547T ACTTGGCCTGGGC . 51 4 45 0 . . PEG3 5178 hgsc.bcm.edu 37 19 57335782 57335782 + Missense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 ZIM2_ENST00000326441,right_lower_lobe,carcinoma,0,4 ZIM2_ENST00000326441 NM_001146184 exon3 c.C242A p.T81N TCCTTGGTGCGGG . 32 2 27 0 . 0 TLE1 7088 hgsc.bcm.edu 37 9 84226713 84226713 + Missense_Mutation SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 TLE1,NS,carcinoma,0,1 TLE1 NM_005077 exon13 c.G1225A p.A409T CCACGGCGGCCGC . 56 2 65 0 . 0 KCNK4 50801 hgsc.bcm.edu 37 11 64064727 64064727 + Silent SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 KCNK4,rectum,carcinoma,0,1 KCNK4 NM_033310 exon4 c.C450T p.I150I TGGCATCGGTCAC . 26 3 34 0 . 0 GJA9 81025 hgsc.bcm.edu;bcgsc.ca 37 1 39340249 39340249 + Silent SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_030772 exon2 c.C1522A p.R508R GAACCCGCCTACC . 70 4 67 0 . . MGA 23269 hgsc.bcm.edu 37 15 41961679 41961679 + Missense_Mutation SNP C C A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 MGA,NS,carcinoma,0,2 MGA NM_001080541 exon2 c.C587A p.S196Y TGCACTCTATGCA . 19 2 20 0 . 0 ZNF727 442319 hgsc.bcm.edu 37 7 63529386 63529386 + Missense_Mutation SNP T T G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 ZNF727,NS,carcinoma,0,1 ZNF727 NM_001159522 exon2 c.T121G p.F41V AACCTGTTCTCCT . 90 6 103 1 . 0 RNR1 6052 hgsc.bcm.edu 37 MT 1072 1072 + RNA SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . CAAACTGGGATTA . 60 12 62 0 . . TMEM132E 124842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 32955682 32955682 + Missense_Mutation SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_207313 exon4 c.G829A p.A277T TCAACAGCCACCG . 47 8 46 0 . . UBR3 130507 hgsc.bcm.edu 37 2 170780438 170780438 + Splice_Site SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_172070 exon12 c.1867-1G>T . ATTCCAGCCAGCA . 93 3 67 0 . . ARID1B 57492 hgsc.bcm.edu 37 6 157469954 157469954 + Missense_Mutation SNP G G T rs146077641 alternate_allele TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 ARID1B,NS,carcinoma,0,1 ARID1B NM_020732 exon9 c.G2748T p.M916I CAGCATGACCCCC . 32 3 42 1 . 0 ND4L 0 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 10668 10668 + Missense_Mutation SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . ENST00000361335 exon1 c.G199A p.A67T GTCTTTGCCGCCT . 36 31 47 0 . . THAP3 90326 hgsc.bcm.edu 37 1 6692962 6692962 + Missense_Mutation SNP T T C novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 THAP3_ENST00000054650,NS,carcinoma,0,1 THAP3_ENST00000054650 NM_001195753 exon6 c.T545C p.L182P ATGCCCTTTTGGA . 50 3 71 1 . 0 TRIM51HP 440041 hgsc.bcm.edu 37 11 55062174 55062174 + RNA SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . ACATCTGCTAAAA . 133 35 177 0 . . C8B 732 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 57409394 57409394 + Silent SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_000066 exon8 c.C1209T p.C403C ACCTCTGCATTTG . 62 12 56 0 . . C6orf164 63914 hgsc.bcm.edu;ucsc.edu 37 6 88107925 88107925 + RNA SNP A A G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . TGCTGAATAAAGC . 13 5 21 0 . . SIK2 23235 hgsc.bcm.edu 37 11 111572283 111572283 + Silent SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_015191 exon6 c.G711A p.P237P GATTCCGTATTTC . 91 4 107 0 . . RPSAP58 388524 hgsc.bcm.edu 37 19 24010294 24010294 + RNA SNP C C G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 RPSAP58_ENST00000496398,NS,carcinoma,0,40 RPSAP58_ENST00000496398 . . . . ACTAACCAGATCC . 41 2 45 0 . 0 ERVK13-1 100507321 hgsc.bcm.edu 37 16 2712543 2712543 + RNA SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . GGAGCCCAATCAA . 62 6 67 0 . . C16orf86 388284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 67702138 67702138 + Missense_Mutation SNP G G A rs369814761 TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_001012984 exon4 c.G589A p.V197I CAGTACGTCAACT . 33 8 38 0 . . TTN 7273 hgsc.bcm.edu 37 2 179569097 179569097 + Silent SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 TTN_ENST00000342992,NS,carcinoma,0,1 TTN_ENST00000342992 NM_001267550 exon106 c.G30000A p.L10000L TTCTTTCAGAGTC . 48 2 36 0 . 0 ADD2 119 hgsc.bcm.edu 37 2 70933527 70933527 + Missense_Mutation SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 ADD2_ENST00000264436,colon,carcinoma,0,2 ADD2_ENST00000264436 NM_001185055 exon2 c.C62T p.T21M GGGACCGTCTCTT . 39 2 62 0 . 0 SUGT1 10910 hgsc.bcm.edu 37 13 53250435 53250435 + Missense_Mutation SNP C C T rs371011852 TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_001130912 exon12 c.C794T p.T265M TGCCTACGCCAAA . 48 4 43 0 . . NET1 10276 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 5496410 5496410 + Silent SNP A A G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_001047160 exon9 c.A951G p.K317K AGTCAAATACCCT . 55 8 60 0 . . CYP2S1 29785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 41709463 41709463 + Missense_Mutation SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_030622 exon7 c.G1085A p.R362Q CGCAGCGGCTGCT . 71 11 85 0 . . PLCL1 5334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 198950711 198950711 + Missense_Mutation SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_006226 exon2 c.C2470T p.R824W GGATATCGGCATG . 67 14 87 0 . . ASB7 140460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 101170164 101170164 + Missense_Mutation SNP A A G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_024708 exon5 c.A734G p.Y245C GGAACTATGAAGG . 73 21 77 0 . . ZNF418 147686 hgsc.bcm.edu;bcgsc.ca 37 19 58437921 58437921 + Missense_Mutation SNP C C A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_133460 exon4 c.G1628T p.C543F TTTCCACATTCTC . 61 4 50 0 . . ZNF12 7559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 6731851 6731851 + Missense_Mutation SNP T T C rs367716418 TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_016265 exon5 c.A722G p.Y241C CACTTATAGGGCT . 57 8 54 0 . . EHMT2 10919 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 31855598 31855598 + Missense_Mutation SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_006709 exon14 c.G1886A p.R629Q GCCTCCCGGCCTG . 22 6 32 0 . . TRAK1 22906 hgsc.bcm.edu 37 3 42260987 42260987 + Silent SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 TRAK1_ENST00000543338,lower_third,carcinoma,0,2 TRAK1_ENST00000543338 NM_001042646 exon15 c.G1965A p.A655A TTTAGCGCACCAT . 43 2 58 0 . 0 GPR17 2840 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 128407628 128407628 + Silent SNP A A G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_005291 exon2 c.A42G p.P14P GCCCCCAAGAGAG . 88 27 103 0 . . NIPBL 25836 hgsc.bcm.edu;bcgsc.ca 37 5 37007576 37007576 + Missense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_015384 exon18 c.G4239T p.Q1413H TCTTCAGGTAAGA . 70 4 59 0 . . ZNF703 80139 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 37555950 37555950 + Missense_Mutation SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_025069 exon2 c.G1531A p.A511T GCCGCCGCCGCCG . 35 9 30 0 . . ITGA9 3680 hgsc.bcm.edu 37 3 37670693 37670693 + Missense_Mutation SNP G G A rs369282174 TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 ITGA9,NS,carcinoma,0,1 ITGA9 NM_002207 exon16 c.G1705A p.V569I CAGGACGTCATCA . 40 2 45 0 . 0 AAK1 22848 hgsc.bcm.edu 37 2 69741780 69741780 + Missense_Mutation SNP C C G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 AAK1_ENST00000409085,NS,carcinoma,0,2 AAK1_ENST00000409085 NM_014911 exon13 c.G1599C p.Q533H CTGCTGCTGGTAG . 45 3 43 1 . 0 MEI1 150365 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 42191438 42191438 + Silent SNP T T C novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_152513 exon29 c.T3558C p.S1186S TAGCAGTGTCCTC . 96 26 102 0 . . EXD1 161829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 41483652 41483652 + Silent SNP T T C novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_152596 exon8 c.A678G p.Q226Q TAGTTTTTGTCTC . 318 72 289 0 . . LRRC15 131578 hgsc.bcm.edu;broad.mit.edu 37 3 194080098 194080098 + Missense_Mutation SNP C C T rs372437949 TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 LRRC15_ENST00000439944,NS,carcinoma,0,2 LRRC15_ENST00000439944 NM_001135057 exon3 c.G1693A p.V565I AGCCGACGCAGGC . 18 3 20 0 . 0 KLHL20 27252 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 173743534 173743534 + Silent SNP A A G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_014458 exon9 c.A1386G p.L462L GTTCTTATATGCT . 110 6 94 0 . . RPSAP58 388524 hgsc.bcm.edu 37 19 24010099 24010099 + RNA SNP A A G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 RPSAP58_ENST00000496398,NS,carcinoma,0,2 RPSAP58_ENST00000496398 . . . . GATGGCATCTATA . 39 2 37 0 . 0 PSMA5 5686 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 109964511 109964511 + Nonsense_Mutation SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_002790 exon2 c.C67T p.Q23X CCACTTGAAATAA . 57 15 64 0 . . CYP4F3 4051 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 15758064 15758064 + Missense_Mutation SNP C C T rs200536182 bycluster TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 CYP4F3,NS,malignant_melanoma,0,1 CYP4F3 NM_001199209 exon5 c.C455T p.T152M TGCTGACGCCTGC . 57 9 85 0 . 0 DLGAP2 9228 hgsc.bcm.edu 37 8 1616531 1616531 + Missense_Mutation SNP C C T rs370388753 TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_004745 exon6 c.C1607T p.P536L CCCCACCGGTGCC . 93 5 110 0 . . SV2C 22987 hgsc.bcm.edu 37 5 75428097 75428097 + Silent SNP C C T rs370011561 TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 SV2C,NS,adenocarcinoma,0,3 SV2C NM_014979 exon2 c.C522T p.F174F TGGCTTCGTGTTA . 48 2 39 0 . 0 FERD3L 222894 hgsc.bcm.edu 37 7 19184752 19184752 + Silent SNP C C T rs73079402 TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 FERD3L,NS,carcinoma,0,1 FERD3L NM_152898 exon1 c.G234A p.E78E CTCTTCCTCCTCC . 14 2 25 0 . 0 TPTE2P6 374491 hgsc.bcm.edu 37 13 25163341 25163341 + RNA SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . TAATTGGTGAGAC . 72 4 87 0 . . COL27A1 85301 hgsc.bcm.edu 37 9 116931158 116931158 + Silent SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 COL27A1,NS,carcinoma,0,1 COL27A1 NM_032888 exon3 c.G1323T p.R441R CACCCGGCCCCTA . 42 2 52 0 . 0 EPHA8 2046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 22915663 22915663 + Missense_Mutation SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_020526 exon5 c.C1279T p.R427W CCCCGCCGGGCCG . 57 11 77 0 . . BIRC2 329 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 102221620 102221620 + Missense_Mutation SNP G G C novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_001256163 exon3 c.G941C p.R314T GCTTGAGGTGTTG . 72 17 91 0 . . FBN3 84467 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 8150345 8150345 + Missense_Mutation SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_032447 exon55 c.G6989A p.R2330Q CAGCCCCGGCCAC . 34 9 32 0 . . PHF3 23469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 64394977 64394977 + Missense_Mutation SNP A A C novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_015153 exon3 c.A1354C p.N452H CAGTTGAATGCTA . 73 18 78 0 . . ITGB8 3696 hgsc.bcm.edu;bcgsc.ca 37 7 20441344 20441344 + Missense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_002214 exon10 c.G1282T p.V428F ATTTAGGTTCTTT . 48 4 45 0 . . DOCK10 55619 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 225704784 225704784 + Missense_Mutation SNP T T A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_014689 exon24 c.A2667T p.L889F ATTCAATAAGTTC . 73 6 67 0 . . PPP1R15A 23645 hgsc.bcm.edu 37 19 49377974 49377974 + Missense_Mutation SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_014330 exon2 c.C1484T p.A495V AGGAAGCTGCTGA . 64 4 83 0 . . ZAK 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 174085956 174085956 + Missense_Mutation SNP A A T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_133646 exon12 c.A1066T p.M356L GCAGAGATGTCAT . 28 5 43 0 . . CACNA1D 776 hgsc.bcm.edu 37 3 53810928 53810928 + Missense_Mutation SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 CACNA1D_ENST00000350061,NS,carcinoma,0,2 CACNA1D_ENST00000350061 NM_000720 exon38 c.G4592A p.R1531H TTCGACGCATCCA . 72 3 77 0 . 0 ALMS1P 200420 hgsc.bcm.edu 37 2 73900918 73900918 + RNA SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . CTCTCTCTTTTTT . 21 4 25 0 . . FNDC3A 22862 hgsc.bcm.edu 37 13 49719949 49719949 + Silent SNP C C A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_001079673 exon8 c.C855A p.T285T ACTTACCTGGTCA . 93 3 91 0 . . CCDC178 374864 hgsc.bcm.edu 37 18 30926184 30926184 + Missense_Mutation SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 C18orf34_ENST00000383096,rectum,carcinoma,+1,2 C18orf34_ENST00000383096 NM_001105528 exon8 c.G649A p.V217M TCTGCACAGCCAA . 74 3 96 0 . +1 ZNF208 7757 hgsc.bcm.edu 37 19 22155346 22155346 + Silent SNP T T C novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 ZNF208_ENST00000428290,NS,carcinoma,0,3 ZNF208_ENST00000428290 NM_007153 exon4 c.A2490G p.E830E GGGCTTTTCTCCA . 71 4 61 0 . 0 RPSAP58 388524 hgsc.bcm.edu 37 19 24010116 24010116 + RNA SNP C C G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 RPSAP58_ENST00000496398,NS,carcinoma,0,2 RPSAP58_ENST00000496398 . . . . AAATCTCAAGAGG . 45 2 46 0 . 0 FAXDC2 10826 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 154202045 154202045 + Missense_Mutation SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_032385 exon7 c.C665T p.P222L TCTATAGGGTGGG . 76 21 75 0 . . SPTAN1 6709 hgsc.bcm.edu 37 9 131348107 131348107 + Nonsense_Mutation SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 SPTAN1,colon,carcinoma,0,1 SPTAN1 NM_003127 exon19 c.C2641T p.Q881X GCTTCCCAGCGTC . 23 2 35 0 . 0 CDKN2A 1029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 21971003 21971003 + Missense_Mutation SNP C C G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 CDKN2A_ENST00000498124,bladder,carcinoma,0,13 CDKN2A_ENST00000498124 NM_058195 exon2 c.G398C p.X133S GCTCCTCAGCCAG . 23 9 25 0 . 0 SEC14L4 284904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 30888052 30888052 + Missense_Mutation SNP G G A rs369641628 TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_001161368 exon9 c.C755T p.P252L CACTTGGGGTTGC . 61 17 54 0 . . FAM208A 23272 hgsc.bcm.edu 37 3 56658514 56658514 + Silent SNP C C T rs150032629 TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 FAM208A,NS,carcinoma,0,4 FAM208A NM_001112736 exon23 c.G4476A p.S1492S TGACTGCGACTCA . 73 3 92 0 0.000 0 GNPTAB 79158 hgsc.bcm.edu 37 12 102147186 102147186 + Missense_Mutation SNP C C T rs141007019 bycluster TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 GNPTAB,NS,carcinoma,0,3 GNPTAB NM_024312 exon19 c.G3566A p.R1189Q CGGTTTCGATACT . 46 2 40 0 0.000 0 STOX2 56977 hgsc.bcm.edu 37 4 184932087 184932087 + Missense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 STOX2_ENST00000308497,colon,carcinoma,0,1 STOX2_ENST00000308497 NM_020225 exon3 c.G2096T p.S699I TATTTAGCAAAGA . 49 2 45 0 . 0 CAMSAP1 157922 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 138703285 138703285 + Nonsense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_015447 exon17 c.C4679A p.S1560X CGGTCTGAGCTGT . 46 23 59 0 . . HIST3H2A 92815 hgsc.bcm.edu 37 1 228645259 228645259 + Missense_Mutation SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_033445 exon1 c.C260T p.A87V CGGATGGCCAGCT . 81 4 75 0 . . ZNF208 7757 hgsc.bcm.edu 37 19 22154452 22154452 + Silent SNP A A G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 ZNF208_ENST00000428290,right_lower_lobe,carcinoma,0,6 ZNF208_ENST00000428290 NM_007153 exon4 c.T3384C p.L1128L TTTAGTAAGGATT . 45 2 54 1 . 0 GPD2 2820 hgsc.bcm.edu;broad.mit.edu 37 2 157427724 157427724 + Missense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 GPD2,right_lower_lobe,carcinoma,0,1 GPD2 NM_001083112 exon13 c.G1687T p.V563F CTAAATGTCCAGG . 88 4 87 0 . 0 BAI1 575 hgsc.bcm.edu 37 8 143570419 143570419 + Missense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 BAI1,right_lower_lobe,carcinoma,0,1 BAI1 NM_001702 exon14 c.G2476T p.V826L GTGTTTGTGGTGG . 40 2 40 0 . 0 SNX29 92017 hgsc.bcm.edu 37 16 12136879 12136879 + Nonsense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 RUNDC2A,NS,carcinoma,0,2 RUNDC2A NM_032167 exon5 c.G373T p.E125X CTCAACGAACACT . 42 2 50 0 . 0 ARHGAP24 83478 hgsc.bcm.edu 37 4 86921760 86921760 + Missense_Mutation SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_001025616 exon10 c.C2132T p.A711V AAGATGCCGAGAA . 81 3 103 0 . . ZNF136 7695 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 12297963 12297963 + Missense_Mutation SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_003437 exon4 c.G770A p.C257Y AGGTATGTGGGAA . 68 8 60 0 . . ALPK3 57538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 85400849 85400849 + Silent SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_020778 exon6 c.G3486A p.L1162L TTCCCTGAAGAAC . 30 4 35 0 . . PA2G4 5036 hgsc.bcm.edu 37 12 56503676 56503676 + Missense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 PA2G4,NS,carcinoma,0,1 PA2G4 NM_006191 exon7 c.G586T p.D196Y GTCATCGATGGAG . 42 2 33 0 . 0 KCNIP4 80333 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 20736336 20736336 + Missense_Mutation SNP A A G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_025221 exon5 c.T392C p.I131T AGCAAAATGGAAA . 102 24 100 0 . . HMGCL 3155 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 24140684 24140684 + Missense_Mutation SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_000191 exon5 c.C493T p.R165W ACCCCCGCACAGA . 20 5 38 0 . . LRRC9 341883 hgsc.bcm.edu 37 14 60394514 60394514 + RNA SNP T T C novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . ATACTATGTGAAG . 33 11 41 0 . . RFWD2 64326 hgsc.bcm.edu 37 1 175956191 175956191 + Missense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_022457 exon18 c.C2021A p.T674N AGCAAAGTCTTAG . 44 4 48 0 . . DENND4B 9909 broad.mit.edu 37 1 153907303 153907303 + Silent SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 DENND4B_ENST00000361217,bladder,carcinoma,0,2 DENND4B NM_014856 exon18 c.G2706A p.Q902Q CTGCTGCTGTTGC . 26 3 26 0 . 210 GBP1 2633 broad.mit.edu 37 1 89528730 89528730 + Missense_Mutation SNP T T C novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 GBP1,middle_lobe,carcinoma,0,1 GBP1 NM_002053 exon2 c.A188G p.K63R TCACCCTTTTTCT . 92 3 94 1 . 68 GPN2 54707 broad.mit.edu 37 1 27210710 27210710 + Missense_Mutation SNP C C A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 GPN2,bladder,carcinoma,-2,1 GPN2 NM_018066 exon4 c.G801T p.E267D TCGCTGCTCTTGG . 13 3 26 0 . 18 MACF1 23499 broad.mit.edu 37 1 39798190 39798190 + Missense_Mutation SNP A A G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . MACF1 . . . . TGCAAAATGGACA . 20 3 23 0 . 909 RD3 343035 broad.mit.edu;bcgsc.ca 37 1 211652604 211652604 + Missense_Mutation SNP A A G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . RD3 NM_183059 exon3 c.T362C p.V121A TGCAGCACCGAGC . 20 4 30 0 . 26 FLJ31813 0 broad.mit.edu 37 10 51826259 51826259 + RNA DEL A A - novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . AAAAGCAAAAAAA . 12 5 8 0 . . OR51A4 401666 broad.mit.edu 37 11 4967989 4967989 + Silent SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . OR51A4 NM_001005329 exon1 c.C342A p.S114S GACTGAGGACTCC . 42 3 58 0 . 73 OR5D16 390144 broad.mit.edu;bcgsc.ca 37 11 55606662 55606662 + Missense_Mutation SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 OR5D16,NS,carcinoma,+2,1 OR5D16 NM_001005496 exon1 c.G435A p.M145I TGCCATGCTGGTG . 60 5 38 0 . 94 POC1B 282809 broad.mit.edu 37 12 89891025 89891025 + Missense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . POC1B NM_172240 exon3 c.C195A p.S65R CTGCACGCTGGTT . 53 3 40 0 . 41 . 0 broad.mit.edu 37 14 65733835 65733838 + RNA DEL CTTT CTTT - rs370367895 bycluster TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . TTCCTGCTTTCTT . 7 2 5 0 . . . 0 broad.mit.edu 37 15 102297875 102297875 + RNA SNP A A G rs75560924 TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . ACTCGCATGGGAA . 38 4 27 0 G|1.000;|0.000 . OR10H1 26539 broad.mit.edu 37 19 15918259 15918259 + Missense_Mutation SNP C C T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . OR10H1 NM_013940 exon1 c.G589A p.A197T CTTTGGCCACCAC . 71 3 80 0 . 59 SCN2A 6326 broad.mit.edu 37 2 166231253 166231253 + Missense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . SCN2A NM_001040143 exon21 c.G4031T p.C1344F TGGTTTGTCTGAT . 54 4 56 1 . 589 RBBP8NL 140893 broad.mit.edu 37 20 60991830 60991830 + Missense_Mutation SNP C C T rs371268446 TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 C20orf151,colon,carcinoma,-1,1 . NM_080833 exon5 c.G299A p.R100H AAGATGCGCTGCA . 41 3 47 0 . . TPTEP1 0 broad.mit.edu 37 22 17128576 17128576 + RNA SNP A A C rs2381064 TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . GCCCGTAGTTTTG . 45 4 46 1 . . BAP1 8314 broad.mit.edu 37 3 52436651 52436667 + Frame_Shift_Del DEL TGAACTCATCGTAGTTG TGAACTCATCGTAGTTG - novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . BAP1 NM_004656 exon16 c.2007_2023del p.669_675del TGCAGATGAACTC . 9 4 12 0 . 371 . 0 broad.mit.edu 37 3 22424366 22424366 + RNA SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . TTTGTTGACATTC . 38 5 39 0 . . KBTBD8 84541 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 67054577 67054577 + Missense_Mutation SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . KBTBD8 NM_032505 exon3 c.G1186A p.G396R GCAATCGGAGGTC . 38 13 72 1 . 101 SLC9C1 285335 broad.mit.edu 37 3 111985124 111985124 + Missense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_183061 exon8 c.C839A p.T280K AAACTTGTAGAAT . 304 5 370 2 . . ACTR3C 653857 broad.mit.edu 37 7 149990455 149990455 + Silent SNP T T C rs2689611 TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 Q9C0K3_HUMAN,NS,carcinoma,0,1 . NM_001164459 exon3 c.A99G p.T33T CGTTAATGTACGT . 81 5 86 0 . . DPY19L2P2 0 broad.mit.edu 37 7 102898150 102898150 + RNA SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . ATGTGCGATACCA . 165 4 154 1 . . NOS3 4846 broad.mit.edu 37 7 150704218 150704218 + Missense_Mutation SNP G G A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 NOS3,NS,carcinoma,-2,1 NOS3 NM_000603 exon17 c.G1966A p.A656T TCCCGGGCATACC . 43 3 50 0 . 131 BTN2A2 10385 ucsc.edu 37 6 26393052 26393052 + Missense_Mutation SNP A A T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 A A Unknown Untested Somatic WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . BTN2A2 NM_006995 exon8 c.A1429T p.T477S GCCTTTACTGTGC . 41 8 26 2 . 87 BTN2A2 10385 ucsc.edu 37 6 26393054 26393054 + Silent SNP T T C novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 T T Unknown Untested Somatic WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . BTN2A2 NM_006995 exon8 c.T1431C p.T477T CTTTACTGTGCCT . 40 8 26 2 . 87 EPN2 22905 ucsc.edu;bcgsc.ca 37 17 19186722 19186722 + Missense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . EPN2 NM_148921 exon3 c.G290T p.R97L AGTGCCGGGAGAA . 32 4 39 0 . 52 GRIN2D 2906 ucsc.edu;bcgsc.ca 37 19 48925062 48925062 + Missense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . GRIN2D NM_000836 exon10 c.G2112T p.Q704H GGAGCAGTACCCG . 32 4 36 0 . 76 RBMX 27316 ucsc.edu 37 X 135958704 135958704 + Missense_Mutation SNP G G C rs112089728 bycluster TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . RBMX NM_002139 exon5 c.C499G p.P167A CTGAAGGTGCAGA . 52 14 34 4 . 149 CEP104 9731 bcgsc.ca 37 1 3750520 3750520 + Missense_Mutation SNP G A A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . CEP104 NM_014704 exon12 c.C1565T p.T522I TGAGCTGTTTCAA . 54 4 77 0 . 79 LOC100129138 0 bcgsc.ca 37 1 104615792 104615792 + RNA SNP C T T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . GGGGGCCGGAGAG . 27 8 22 0 . . . 127608 bcgsc.ca 37 1 248098009 248098009 + Silent SNP A G G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . CAAAAAAATGAAT . 38 10 46 0 . . LMAN2L 81562 bcgsc.ca 37 2 97373516 97373516 + Missense_Mutation SNP G T T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . LMAN2L NM_001142292 exon8 c.C872A p.P291Q TCTTCTGGGGTTC . 48 4 64 0 . 27 TMEM184C 55751 bcgsc.ca 37 4 148539206 148539206 + Silent SNP C T T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . TMEM184C NM_018241 exon1 c.C99T p.C33C CCTATGCGTGTGG . 67 4 94 0 . 25 . 0 bcgsc.ca 37 5 2787892 2787892 + RNA SNP G T T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . CCCACAGTATTGG . 52 7 37 0 . . DNAH5 1767 bcgsc.ca 37 5 13830277 13830277 + Missense_Mutation SNP C T T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 DNAH5,colon,carcinoma,-1,1 DNAH5 NM_001369 exon37 c.G6107A p.R2036H TCAATACGGTTAA . 64 4 39 0 . 868 SLC36A1 206358 bcgsc.ca 37 5 150853233 150853233 + Splice_Site SNP G T T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . SLC36A1 NM_078483 exon8 c.724-1G>T . CTTTCAGAGGATC . 49 4 48 0 . 50 PNLDC1 154197 bcgsc.ca 37 6 160225658 160225658 + Missense_Mutation SNP G T T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . PNLDC1 NM_173516 exon6 c.G417T p.W139C GAACTGGAGAGTT . 70 5 76 0 . 66 . 441420 bcgsc.ca 37 9 45376206 45376206 + RNA SNP A C C rs372171742 TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . GGACCAAACCAAC . 41 7 51 2 . . SNX15 29907 bcgsc.ca 37 11 64799964 64799964 + Missense_Mutation SNP A G G novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . SNX15 NM_147777 exon3 c.A197G p.H66R ACACCCACCGCAA . 46 5 63 0 . 35 POLE 5426 bcgsc.ca 37 12 133253969 133253969 + Missense_Mutation SNP C T T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . POLE NM_006231 exon8 c.G781A p.D261N GGTCATCTCGGCG . 55 4 56 0 . 416 . 401730 bcgsc.ca 37 13 23411988 23411988 + RNA SNP A C C novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . TTATTAAATTTAT . 33 5 54 0 . . . 0 bcgsc.ca 37 15 20450232 20450232 + RNA SNP G A A rs375441502 TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . . . . . GGGAGCGTTCCTG . 114 10 124 0 . . UBE2Q2 92912 bcgsc.ca 37 15 76183298 76183298 + Missense_Mutation SNP G A A novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . UBE2Q2 NM_173469 exon11 c.G972A p.M324I CATCATGCAAATA . 52 4 66 0 . 26 PIEZO2 63895 bcgsc.ca 37 18 10718203 10718203 + Missense_Mutation SNP C T T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_022068 exon34 c.G4910A p.G1637E CCTGGTCCATCGG . 35 4 35 0 . . ZNF534 147658 bcgsc.ca 37 19 52941105 52941105 + Missense_Mutation SNP G T T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . ZNF534 NM_001143939 exon4 c.G431T p.G144V TTTATGGATGTAA . 47 4 45 0 . 105 TMEM257 9142 bcgsc.ca 37 X 144909307 144909307 + Silent SNP C T T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 . . NM_004709 exon1 c.C112T p.L38L TCCCCACTGACTA . 79 4 70 0 . . KCNMB1 3779 hgsc.bcm.edu 37 5 169805956 169805956 + Missense_Mutation SNP C C T rs2301149 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 KCNMB1,NS,carcinoma,0,1 KCNMB1 NM_004137 exon4 c.G328A p.E110K TGTCCACGCTGCC . 59 3 53 0 . 0 PCDH15 65217 hgsc.bcm.edu 37 10 55566583 55566583 + Missense_Mutation SNP G G T novel TCGA-3X-AAVE-01A-11D-A417-09 TCGA-3X-AAVE-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 57584133-036a-4eab-9c63-c0fdd134ae42 36d5f070-dd59-4be0-85b4-ce3e1cb99d06 PCDH15_ENST00000414778,NS,carcinoma,0,1 PCDH15_ENST00000414778 . p.S1604Y . . TCAGTAGAAAATG . 38 2 45 0 . 0