Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
HTATSF1	27336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	135593803	135593803	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001163280	exon10	c.1898delC	p.T633fs	GGATACATATGAA	.	65	17	118	0	.	.
SELP	6403	hgsc.bcm.edu	37	1	169564103	169564103	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	SELP,NS,carcinoma,0,1	SELP	NM_003005	exon13	c.C2114A	p.S705X	AGTTCTGAGCATT	.	35	2	107	0	.	0
ITK	3702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156670696	156670696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_005546	exon12	c.G1124T	p.G375V	AATTTGGGTTGGT	.	53	19	68	0	.	.
MYBL2	4605	hgsc.bcm.edu	37	20	42315650	42315650	+	Silent	SNP	C	C	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	MYBL2,NS,carcinoma,0,1	MYBL2	NM_002466	exon5	c.C438A	p.I146I	CATCATCTGCGAG	.	40	2	59	0	.	0
TTC8	123016	hgsc.bcm.edu	37	14	89338781	89338781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	TTC8,colon,carcinoma,0,1	TTC8	NM_144596	exon13	c.G1332T	p.K444N	GCGGAAGGGCCAC	.	44	2	77	0	.	0
SNX13	23161	hgsc.bcm.edu	37	7	17836491	17836491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	SNX13,caecum,carcinoma,0,1	SNX13	NM_015132	exon25	c.C2585A	p.T862K	ACTCTTGTTCTCA	.	43	2	91	0	.	0
HSD17B7	51478	hgsc.bcm.edu	37	1	162769603	162769603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	HSD17B7,NS,carcinoma,0,5	HSD17B7	NM_016371	exon5	c.G518A	p.S173N	CTCGCAGTGCAAG	.	25	2	72	0	.	0
FOLH1	2346	hgsc.bcm.edu	37	11	49175427	49175427	+	Silent	SNP	A	A	G	rs199517010	bycluster	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	FOLH1,mouth,carcinoma,0,1	FOLH1	NM_004476	exon17	c.T1941C	p.S647S	TCTCTCACTGAAC	.	50	2	68	0	0.001	0
ERMP1	79956	hgsc.bcm.edu	37	9	5825098	5825098	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_024896	exon3	c.C762A	p.V254V	TTGCAAGACATTT	.	71	4	126	0	.	.
OR2L8	391190	hgsc.bcm.edu	37	1	248112794	248112794	+	Missense_Mutation	SNP	G	G	C	rs200574966		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	OR2L8,NS,carcinoma,0,2	OR2L8	NM_001001963	exon1	c.G635C	p.G212A	TCATTGGTATTTC	.	42	2	90	1	.	0
ARHGEF40	55701	hgsc.bcm.edu	37	14	21542360	21542360	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	ARHGEF40_ENST00000298694,colon,carcinoma,+1,1	ARHGEF40_ENST00000298694	NM_018071	exon3	c.G471A	p.R157R	GGACCGGCCAACA	.	39	2	53	0	.	+1
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A	rs121912651	bycluster	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	TP53_ENST00000545858,NS,adenocarcinoma,+1,704	TP53_ENST00000545858	NM_000546	exon7	c.C742T	p.R248W	GCCTCCGGTTCAT	.	10	5	48	0	.	+1
SLC22A5	6584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	131729481	131729481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_003060	exon9	c.G1564A	p.D522N	ACCATTGACCAGA	.	31	5	59	0	.	.
PDE7B	27115	hgsc.bcm.edu	37	6	136512843	136512843	+	Silent	SNP	C	C	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	PDE7B,NS,malignant_melanoma,+2,1	PDE7B	NM_018945	exon13	c.C1218A	p.L406L	CCACCTCGCACAC	.	32	2	59	0	.	+2
ZMPSTE24	10269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	40724003	40724003	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_005857	exon1	c.C60T	p.F20F	TATCTTCGGGGCC	.	32	5	26	0	.	.
ABCB5	340273	hgsc.bcm.edu	37	7	20778674	20778674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	ABCB5_ENST00000404938,right_upper_lobe,carcinoma,0,2	ABCB5_ENST00000404938	NM_001163941	exon24	c.C2936A	p.S979Y	AATATTCCAAAGC	.	53	3	75	0	.	0
TUBGCP3	10426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113200144	113200144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	TUBGCP3,NS,carcinoma,0,2	TUBGCP3	NM_006322	exon11	c.G1204A	p.A402T	TGTAGGCGTGGAC	.	29	4	48	0	.	0
HAUS4	54930	hgsc.bcm.edu	37	14	23424312	23424312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	HAUS4,NS,carcinoma,0,1	HAUS4	NM_001166270	exon2	c.C52A	p.Q18K	TACCTTGTTGAAG	.	47	3	54	0	.	0
PTCHD1	139411	hgsc.bcm.edu;bcgsc.ca	37	X	23411591	23411591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_173495	exon3	c.G1956T	p.K652N	GGCCAAGACCATG	.	75	4	114	0	.	.
STAG2	10735	hgsc.bcm.edu	37	X	123220534	123220534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001042749	exon30	c.G3191A	p.S1064N	GAATCAGCAGCCG	.	80	4	92	0	.	.
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651251	1651251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	KRTAP5-5,NS,carcinoma,0,2	KRTAP5-5	NM_001001480	exon1	c.G181A	p.G61S	GGCTCCGGCTGCT	.	38	2	77	1	.	0
HEG1	57493	hgsc.bcm.edu	37	3	124732804	124732804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	HEG1,colon,carcinoma,0,1	HEG1	NM_020733	exon6	c.G1619A	p.G540D	GCTGTGCCACGCA	.	28	2	48	0	.	0
ANKRD34A	284615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145473924	145473924	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001039888	exon4	c.T596G	p.M199R	GTGGGATGTTATC	.	28	7	50	0	.	.
WASF1	8936	hgsc.bcm.edu	37	6	110423269	110423269	+	Silent	SNP	A	A	G	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	WASF1,colon,carcinoma,0,1	WASF1	NM_001024935	exon9	c.T1044C	p.P348P	AGGGGGAGGAGTT	.	22	4	32	1	.	0
LRRC9	341883	hgsc.bcm.edu;bcgsc.ca	37	14	60398337	60398337	+	RNA	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	.	.	.	.	TTTTAGGGTTTGC	.	87	4	130	0	.	.
DAGLB	221955	hgsc.bcm.edu;bcgsc.ca	37	7	6487440	6487440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_139179	exon1	c.G34A	p.A12T	CGATGGCCCAGCG	.	75	4	96	0	.	.
CALN1	83698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	71868298	71868298	+	Silent	SNP	G	G	A	rs376303075		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_031468	exon2	c.C57T	p.D19D	TCCTCCGTCCCCC	.	97	35	156	0	.	.
MCAM	4162	hgsc.bcm.edu	37	11	119181068	119181068	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	MCAM,caecum,carcinoma,0,1	MCAM	NM_006500	exon15	c.G1902A	p.P634P	GTCTCCCGGAGCC	.	42	2	54	0	.	0
DNAJC11	55735	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	6713011	6713011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_018198	exon6	c.G508A	p.A170T	AGGGTGCCTAAAA	.	34	4	58	0	.	.
PTMA	5757	hgsc.bcm.edu	37	2	232577559	232577559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	PTMA,NS,carcinoma,0,2	PTMA	NM_001099285	exon5	c.T334C	p.X112Q	GATGACTAGACAG	.	45	2	86	1	.	0
CEACAM5	1048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42222257	42222257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_004363	exon6	c.C1448T	p.A483V	ACTCAGCCAGTGG	.	33	4	59	0	.	.
FLNA	2316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153595859	153595859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001456	exon5	c.G774T	p.M258I	GTAGGTCATGACA	.	87	22	114	0	.	.
ZP4	57829	hgsc.bcm.edu;broad.mit.edu	37	1	238048735	238048735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	ZP4,right_lower_lobe,carcinoma,0,1	ZP4	NM_021186	exon8	c.C1116A	p.S372R	GTCAGTGCTGGGT	.	42	3	68	0	.	0
C7orf33	202865	hgsc.bcm.edu	37	7	148288051	148288051	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	C7orf33,colon,carcinoma,0,1	C7orf33	NM_145304	exon1	c.G34T	p.E12X	CTTGAAGAGTGTC	.	37	2	73	0	.	0
CADPS	8618	hgsc.bcm.edu	37	3	62477973	62477973	+	Missense_Mutation	SNP	C	C	T	rs376315928		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	CADPS_ENST00000383710,NS,carcinoma,0,2	CADPS_ENST00000383710	NM_183394	exon19	c.G2906A	p.R969H	TCAGTACGGAGAA	.	37	2	72	0	.	0
IQCK	124152	hgsc.bcm.edu	37	16	19745076	19745076	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	IQCK,colon,carcinoma,0,1	IQCK	NM_153208	exon4	c.G303T	p.P101P	TTTTCCGGTTTCC	.	52	3	88	0	.	0
CCDC136	64753	hgsc.bcm.edu	37	7	128446399	128446399	+	Silent	SNP	C	C	A	rs368845976	alternate_allele	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	CCDC136,NS,carcinoma,0,1	CCDC136	NM_022742	exon8	c.C1198A	p.R400R	GAGCTCCGGCAGC	.	16	2	27	0	.	0
ATAD3A	55210	hgsc.bcm.edu;broad.mit.edu	37	1	1458913	1458913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_018188	exon9	c.G1073A	p.R358Q	TCAGTCGACCCCA	.	55	4	95	0	.	.
RBMXL3	139804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	114426604	114426604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001145346	exon1	c.G2600A	p.R867H	GAGGCCGCTCGCA	.	82	20	115	0	.	.
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151891214	151891214	+	Splice_Site	SNP	C	C	G	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	MLL3_ENST00000355193,bladder,carcinoma,0,2	MLL3_ENST00000355193	NM_170606	exon32	c.4541-1G>C	.	CAAGCTCTAGGAG	.	50	9	88	0	.	0
ELMO1	9844	hgsc.bcm.edu	37	7	36910057	36910057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	ELMO1,NS,carcinoma,0,2	ELMO1	NM_014800	exon20	c.G1846T	p.V616L	TCACCACGGCTTT	.	42	2	38	0	.	0
NSUN5	55695	hgsc.bcm.edu;bcgsc.ca	37	7	72722459	72722459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_148956	exon2	c.C185A	p.A62E	TTCTCCGCACGGA	.	46	4	70	0	.	.
WWOX	51741	hgsc.bcm.edu	37	16	78420808	78420808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	WWOX_ENST00000408984,NS,carcinoma,0,3	WWOX_ENST00000408984	NM_016373	exon6	c.G568T	p.V190L	CGTAGCGTGCAGC	.	28	2	32	0	.	0
ANKRD16	54522	hgsc.bcm.edu	37	10	5925099	5925099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	ANKRD16,caecum,carcinoma,0,1	ANKRD16	NM_001009943	exon5	c.C719T	p.A240V	GCCTGGGCACCCA	.	16	2	16	0	.	0
GABRA1	2554	hgsc.bcm.edu	37	5	161324315	161324315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	GABRA1,NS,carcinoma,0,1	GABRA1	NM_001127643	exon11	c.G1258T	p.D420Y	AAAATTGACCGAC	.	41	3	67	0	.	0
ZNF334	55713	hgsc.bcm.edu	37	20	45130856	45130856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	ZNF334,NS,carcinoma,0,1	ZNF334	NM_018102	exon5	c.G1122T	p.E374D	TGGCTTCTCTCCT	.	38	2	51	0	.	0
KDM2B	84678	hgsc.bcm.edu	37	12	121881589	121881589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	KDM2B_ENST00000377071,rectum,carcinoma,0,2	KDM2B_ENST00000377071	NM_032590	exon17	c.C2459T	p.S820L	TGAAGCGATGAGG	.	24	2	44	0	.	0
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28268848	28268848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_198529	exon1	c.C34A	p.P12T	CTCAGACCTGCTC	.	30	7	55	0	.	.
COX2	5743	hgsc.bcm.edu;bcgsc.ca	37	MT	7827	7827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	ENST00000361739	exon1	c.T242C	p.L81P	CATCCCTACGCAT	.	437	51	2160	2	.	.
ERMP1	79956	hgsc.bcm.edu	37	9	5810057	5810057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	ERMP1,colon,carcinoma,0,1	ERMP1	NM_024896	exon8	c.C1502A	p.A501D	ATTTTGGCTACAG	.	38	2	64	1	.	0
OTUD6B	51633	hgsc.bcm.edu	37	8	92096314	92096314	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	OTUD6B,colon,carcinoma,0,2	OTUD6B	NM_016023	exon6	c.G859T	p.E287X	GGTGAAGAATATT	.	49	2	68	0	.	0
MIR548G	100313938	hgsc.bcm.edu	37	3	99524505	99524505	+	RNA	SNP	C	C	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	.	.	.	.	AAGCAGCCAGGCC	.	21	4	18	0	.	.
RAN	5901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	131359125	131359125	+	Silent	SNP	G	G	A	rs1802283	alternate_allele	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	RAN,NS,carcinoma,0,1	RAN	NM_006325	exon5	c.G282A	p.S94S	AACATCGAGAGTT	.	38	13	95	1	.	0
NOTCH3	4854	hgsc.bcm.edu	37	19	15272347	15272347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	NOTCH3_ENST00000263388,NS,carcinoma,0,2	NOTCH3_ENST00000263388	NM_000435	exon33	c.G6092A	p.R2031H	GGGCTGCGGGGCC	.	15	2	16	0	.	0
EML5	161436	hgsc.bcm.edu	37	14	89171303	89171303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_183387	exon13	c.C1952A	p.P651H	AGCTGAGGTAGAT	.	60	4	79	0	.	.
NAA35	60560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	88631517	88631517	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_024635	exon18	c.A1632T	p.Q544H	CTCTCAAATGGCA	.	27	18	60	0	.	.
CAST	831	hgsc.bcm.edu	37	5	96073607	96073607	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	CAST,NS,carcinoma,0,1	CAST	NM_001042440	exon9	c.G631T	p.E211X	CCTGAAGAAACTG	.	39	2	67	0	.	0
BACE1	23621	hgsc.bcm.edu	37	11	117186290	117186290	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	BACE1,right_upper_lobe,carcinoma,0,1	BACE1	NM_138972	exon1	c.C222A	p.G74G	GTAGTAGCCCTGC	.	56	3	84	0	.	0
SYT9	143425	hgsc.bcm.edu	37	11	7334708	7334708	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.,1	.	NM_175733	exon3	c.G580T	p.G194X	TTGACTGGAATTG	.	47	2	60	0	.	91
SLC25A17	10478	hgsc.bcm.edu	37	22	41173096	41173096	+	Missense_Mutation	SNP	G	G	A	rs371543259		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	SLC25A17,caecum,carcinoma,0,1	SLC25A17	NM_006358	exon7	c.C641T	p.A214V	GCAATCGCTTTGG	.	40	2	41	0	.	0
KIAA0368	23392	hgsc.bcm.edu	37	9	114133913	114133913	+	Silent	SNP	C	C	T	rs372133962	alternate_allele	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	KIAA0368,NS,carcinoma,0,1	KIAA0368	NM_001080398	exon44	c.G5259A	p.T1753T	TGCCCACGTTCTT	.	44	2	81	0	.	0
RNF38	152006	hgsc.bcm.edu	37	9	36376031	36376031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	RNF38,NS,carcinoma,0,1	RNF38	NM_022781	exon3	c.C256A	p.P86T	CCCATGGTCGCAT	.	45	2	92	0	.	0
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	63511084	63511084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_004361	exon7	c.C1018T	p.R340W	ACGCTACGGATAG	.	43	16	60	0	.	.
C9orf135	138255	hgsc.bcm.edu;bcgsc.ca	37	9	72501779	72501779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001010940	exon5	c.G475T	p.D159Y	TCAGAAGATTATG	.	42	4	97	0	.	.
LMLN	89782	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	197703534	197703534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001136049	exon5	c.G497T	p.C166F	GGGAGTGTGCCGC	.	50	4	97	0	.	.
HFM1	164045	hgsc.bcm.edu	37	1	91784927	91784927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	HFM1,NS,carcinoma,0,1	HFM1	NM_001017975	exon24	c.G2603T	p.G868V	ATGCATCCTAGTT	.	69	3	133	0	.	0
LAMA2	3908	hgsc.bcm.edu	37	6	129777488	129777488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_000426	exon48	c.G6716T	p.R2239I	CTGGGAGAAATGG	.	45	4	74	0	.	.
FLG	2312	hgsc.bcm.edu;bcgsc.ca	37	1	152281163	152281163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	FLG,NS,carcinoma,0,1	FLG	NM_002016	exon3	c.C6199T	p.P2067S	GATGGGGCCCAGC	.	67	4	121	0	.	0
AP2A1	160	hgsc.bcm.edu	37	19	50303257	50303257	+	Silent	SNP	C	C	T	rs201906388		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	AP2A1,colon,carcinoma,0,1	AP2A1	NM_130787	exon11	c.C1305T	p.Y435Y	GAAGTACGCCGTG	.	41	2	62	0	0.002	0
NEURL4	84461	hgsc.bcm.edu;broad.mit.edu	37	17	7232439	7232439	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001005408	exon1	c.C193T	p.Q65X	CCGGCTGCTGCCG	.	10	5	25	0	.	.
DLG5	9231	hgsc.bcm.edu	37	10	79613209	79613209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	DLG5,NS,carcinoma,0,1	DLG5	NM_004747	exon5	c.G767A	p.R256Q	CGCTCCCGCAGCA	.	28	2	60	0	.	0
JAK3	3718	hgsc.bcm.edu	37	19	17951082	17951082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	JAK3_ENST00000458235,colon,carcinoma,0,2	JAK3_ENST00000458235	NM_000215	exon9	c.G1211A	p.S404N	TGGGGGCTGCGGC	.	24	2	28	0	.	0
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	21468306	21468306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	SP4,colon,carcinoma,0,1	SP4	NM_003112	exon2	c.G19A	p.E7K	AAGAAGGAGGAGG	.	39	5	67	1	.	0
FRG1	2483	hgsc.bcm.edu	37	4	190884267	190884267	+	Missense_Mutation	SNP	G	G	A	rs373037319		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	FRG1,middle_lobe,carcinoma,0,1	FRG1	NM_004477	exon9	c.G760A	p.D254N	AAAGCCGACAGAT	.	34	3	77	1	.	0
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	C	G	rs121913530	bycluster	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	KRAS_ENST00000256078,NS,adenocarcinoma,+1,6023	KRAS_ENST00000256078	NM_004985	exon2	c.G34C	p.G12R	CGCCACCAGCTCC	.	45	9	56	0	.	+1
ITGA6	3655	hgsc.bcm.edu	37	2	173349546	173349546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	ITGA6_ENST00000409080,NS,carcinoma,0,2	ITGA6_ENST00000409080	NM_000210	exon12	c.G1586T	p.R529I	AAAGAAGAAAATC	.	39	2	102	0	.	0
RPL10A	4736	hgsc.bcm.edu	37	6	35438392	35438392	+	Missense_Mutation	SNP	G	G	T	rs1061530	alternate_allele	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	RPL10A,colon,carcinoma,0,1	RPL10A	NM_007104	exon6	c.G519T	p.K173N	CGTGAAGATGACA	.	53	2	122	0	.	0
FAM118B	79607	hgsc.bcm.edu;bcgsc.ca	37	11	126131328	126131328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_024556	exon8	c.G991T	p.V331L	GGGATGGTGAGAG	.	69	4	81	0	.	.
CKS1B	1163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154950570	154950570	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001826	exon2	c.A167T	p.H56L	GGGTCCATTATAT	.	73	15	148	0	.	.
TNFRSF21	27242	hgsc.bcm.edu	37	6	47251781	47251781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	TNFRSF21,right_lower_lobe,carcinoma,0,1	TNFRSF21	NM_014452	exon3	c.A1136G	p.K379R	GGCCCCTTTTTCA	.	29	2	55	0	.	0
A1CF	29974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	52601740	52601740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	NM_001198820	exon6	c.T271C	p.Y91H	TTTCATAAATTTT	.	41	17	88	0	.	.
MIER1	57708	hgsc.bcm.edu	37	1	67411833	67411833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	MIER1_ENST00000401041,bladder,carcinoma,0,2	MIER1_ENST00000401041	NM_001077700	exon4	c.G194T	p.G65V	TACCAGGAGGTTC	.	62	3	133	0	.	0
PLK3	1263	broad.mit.edu	37	1	45266806	45266806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	PLK3	NM_004073	exon3	c.G417T	p.L139F	TTTCTTGGAGCTC	.	25	3	48	0	.	41
WDFY4	57705	broad.mit.edu	37	10	49982677	49982677	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	WDFY4	NM_020945	exon14	c.G2728T	p.E910X	ATCTTTGAGAAGC	.	27	9	47	0	.	205
PTPN21	11099	broad.mit.edu;bcgsc.ca	37	14	88946343	88946343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	PTPN21	NM_007039	exon13	c.G1432A	p.G478S	AGCTGCCGATGTT	.	13	4	21	0	.	113
CHD2	1106	broad.mit.edu	37	15	93552420	93552420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	CHD2	NM_001271	exon35	c.G4459T	p.D1487Y	CAGCTCGACAAAC	.	37	3	62	0	.	280
.	0	broad.mit.edu	37	16	32126964	32126964	+	RNA	DEL	T	T	-	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	.	.	.	.	CCCCCCTGCCGCC	.	6	2	4	0	.	.
PLIN4	729359	broad.mit.edu	37	19	4510665	4510665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	PLIN4	NM_001080400	exon3	c.C3265A	p.P1089T	GCTCCGGGCCTAC	.	38	3	76	0	.	191
ZNF837	116412	broad.mit.edu	37	19	58879979	58879979	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	ZNF837	NM_138466	exon3	c.721delC	p.Q241fs	CCGCCTGCTGCTG	.	7	2	8	0	.	16
SULT4A1	25830	broad.mit.edu	37	22	44229568	44229568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	SULT4A1	NM_014351	exon5	c.C555A	p.H185Q	CATGCGGTGCTCC	.	17	3	40	0	.	26
CPNE9	151835	broad.mit.edu;bcgsc.ca	37	3	9746275	9746275	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	CPNE9	.	.	.	.	AGGAACCTGCTAG	.	19	8	49	0	.	45
C5orf60	285679	broad.mit.edu	37	5	179069979	179069979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	C5orf60	NM_001142306	exon4	c.C574A	p.L192M	AGCTCAGGGATGA	.	39	3	71	0	.	24
HSP90AB1	3326	broad.mit.edu	37	6	44221231	44221231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	HSP90AB1,colon,carcinoma,-1,1	HSP90AB1	NM_007355	exon12	c.G2071T	p.D691Y	GGTATTGATGAAG	.	34	3	38	0	.	83
ACHE	43	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100490325	100490325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	ACHE	NM_000665	exon3	c.C1183T	p.R395W	CGACCCGCACCCC	.	116	16	102	1	.	80
GAGE12J	729396	broad.mit.edu	37	X	49179682	49179682	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	GAGE12J	NM_001098406	exon2	c.C10T	p.R4X	AGTTGGCGAGGAA	.	597	8	888	0	.	6
FLNB	2317	ucsc.edu	37	3	58090844	58090844	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	FLNB	NM_001457	exon11	c.C1648T	p.Q550X	GGTATGCAGAAAG	.	40	4	70	0	.	430
NAMPT	10135	ucsc.edu;bcgsc.ca	37	7	105894816	105894816	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	NAMPT	NM_005746	exon9	c.C1224A	p.G408G	CCCAAGGCCATTA	.	36	4	70	0	.	37
STAT6	6778	ucsc.edu;bcgsc.ca	37	12	57498569	57498569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	STAT6	NM_001178079	exon10	c.C1029A	p.N343K	CACAGTGTTGTTG	.	12	4	25	0	.	69
ARG2	384	ucsc.edu;bcgsc.ca	37	14	68114848	68114848	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	ARG2	NM_001172	exon7	c.G807T	p.G269G	TGTCGGGGGACTA	.	43	4	53	0	.	20
ISLR2	57611	ucsc.edu	37	15	74427081	74427081	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	ISLR2	NM_001130138	exon4	c.C1986T	p.G662G	AGGCGGCGAGGCG	.	34	4	88	0	.	78
CYP2A6	1548	ucsc.edu	37	19	41355849	41355849	+	Silent	SNP	A	A	G	rs2302990	bycluster	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	CYP2A6	NM_000762	exon2	c.T217C	p.L73L	GCCCCAAGTGAAT	.	52	8	64	5	.	69
SNRNP200	23020	bcgsc.ca	37	2	96962808	96962808	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	SNRNP200	NM_014014	exon12	c.C1378A	p.Q460K	GCAGTTGCTAGAA	.	21	3	34	0	.	195
NMUR1	10316	bcgsc.ca	37	2	232393062	232393062	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	NMUR1	NM_006056	exon2	c.C670A	p.P224T	CCCGTGGGCGGAC	.	12	3	34	0	.	46
COPS7B	64708	bcgsc.ca	37	2	232653436	232653436	+	Silent	SNP	G	T	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	COPS7B	NM_022730	exon2	c.G156T	p.V52V	CAACGTGCAGGAG	.	64	4	107	0	.	14
DMXL1	1657	bcgsc.ca	37	5	118580098	118580098	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	DMXL1	NM_005509	exon42	c.C8686A	p.P2896T	TATGCTCCAAAAC	.	61	4	92	0	.	268
TMCO6	55374	bcgsc.ca	37	5	140024571	140024571	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	TMCO6	NM_018502	exon12	c.C1370T	p.A457V	CCTAGGCTGTTCA	.	13	3	19	0	.	30
XPO5	57510	bcgsc.ca	37	6	43501688	43501688	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	XPO5	NM_020750	exon21	c.C2399A	p.T800N	GCCTTGGTGAAAG	.	22	3	33	0	.	79
SGK1	6446	bcgsc.ca	37	6	134492266	134492266	+	Missense_Mutation	SNP	G	T	T	rs78176488	bycluster	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	SGK1_ENST00000528577,NS,carcinoma,0,5	SGK1	NM_001143676	exon12	c.C1218A	p.N406K	AGGCTTGTTCAGA	.	37	15	53	1	.	387
TBX20	57057	bcgsc.ca	37	7	35242184	35242184	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	TBX20	NM_001077653	exon8	c.C1202T	p.A401V	GCAATGGCCGATG	.	47	4	77	0	.	96
POLM	27434	bcgsc.ca	37	7	44113248	44113248	+	Silent	SNP	G	A	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	POLM	NM_013284	exon10	c.C1374T	p.S458S	CCCATGGCTGTTC	.	33	4	64	0	.	50
.	0	bcgsc.ca	37	9	90038777	90038777	+	RNA	SNP	G	A	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	.	.	.	.	ATTACAGCAAACT	.	12	3	30	0	.	.
MUC2	4583	bcgsc.ca	37	11	1093312	1093312	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	MUC2	NM_002457	exon30	c.C5131G	p.P1711A	CCAACCCCAACAC	.	279	18	487	17	.	614
PHF21A	51317	bcgsc.ca	37	11	45986887	45986887	+	Missense_Mutation	SNP	G	T	T	rs188195248	bycluster	TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	PHF21A	NM_016621	exon9	c.C975A	p.S325R	TGGCTTGCTAAGC	.	43	13	55	6	G|0.999;T|0.001	107
TRPM1	4308	bcgsc.ca	37	15	31355481	31355481	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	TRPM1	NM_001252020	exon7	c.G856A	p.V286M	GGGGCACGCCCTG	.	22	3	27	0	.	183
CTDSPL2	51496	bcgsc.ca	37	15	44807020	44807020	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	CTDSPL2	NM_016396	exon10	c.G1090T	p.D364Y	ATACTAGACCCTA	.	45	4	102	0	.	31
FAM20A	54757	bcgsc.ca	37	17	66538202	66538202	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	FAM20A	NM_017565	exon7	c.C1033A	p.P345T	GGGACGGCAGGAA	.	24	3	56	0	.	35
RPTOR	57521	bcgsc.ca	37	17	78811735	78811735	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	RPTOR	NM_001163034	exon10	c.C1150A	p.L384M	TGGGACCTGGCTG	.	22	3	37	0	.	122
KDM4B	23030	bcgsc.ca	37	19	5041222	5041222	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	KDM4B_ENST00000381759,NS,carcinoma,0,2	KDM4B	NM_015015	exon5	c.C392A	p.P131Q	TCTCCCCGATCTA	.	43	4	43	0	.	120
ZNF208	7757	bcgsc.ca	37	19	22154193	22154193	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	ZNF208_ENST00000428290,NS,carcinoma,+2,3	ZNF208	NM_007153	exon4	c.C3643A	p.H1215N	TCTTGTGATATCT	.	29	3	46	0	.	817
.	6465	bcgsc.ca	37	X	63652534	63652534	+	RNA	SNP	G	A	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	.	.	.	.	AGCCAGGAAGGGC	.	11	4	23	0	.	.
.	642812	bcgsc.ca	37	X	115238617	115238617	+	RNA	SNP	G	A	A	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	.	.	.	.	.	AAATCTGGATGTT	.	68	18	139	0	.	.
ELF4	2000	bcgsc.ca	37	X	129205393	129205393	+	Silent	SNP	G	T	T	novel		TCGA-3X-AAVB-01A-31D-A417-09	TCGA-3X-AAVB-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3b4557a5-53c5-475e-81e1-945411375b6f	d7040563-8449-489d-9155-a19f0819a6c7	.	ELF4	NM_001421	exon6	c.C534A	p.I178I	CTTCCGGACTATG	.	8	3	19	0	.	67