Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ATRX 546 genome.wustl.edu 37 X 76814318 76814318 + Splice_Site SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 X 76814318 76814318 C T SNP ATRX ENST00000373344 human ensembl 70_37 -1 known splice_site c.6327-1 e29-1 1.000 - - - no_errors ATRX HGNC ATRX 546 genome.wustl.edu 37 X 76814318 76814318 + Splice_Site SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 X 76814318 76814318 C T SNP ATRX ENST00000373344 human ensembl 70_37 -1 known splice_site c.6327-1 e29-1 1.000 - - - no_errors ATRX HGNC BAI1 575 genome.wustl.edu 37 8 143545680 143545680 + Missense_Mutation SNP G G A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 8 143545680 143545680 G A SNP BAI1 ENST00000323289 human ensembl 70_37 +1 known missense c.121 p.E41K 0.879 NULL pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like - no_errors BAI1 HGNC C10orf113 387638 genome.wustl.edu 37 10 21435341 21435344 + Frame_Shift_Del DEL CACT CACT - TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 CACT CACT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 10 21435341 21435344 CACT - DEL C10orf113 ENST00000534331 human ensembl 70_37 -1 known frame_shift_del c.97_94 p.S32fs 0.006:0.007:0.007:0.008 NULL NULL - no_errors C10orf113 HGNC C11orf63 79864 genome.wustl.edu 37 11 122774915 122774915 + Silent SNP G G T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 11 122774915 122774915 G T SNP C11orf63 ENST00000227349 human ensembl 70_37 +1 known silent c.627 p.P209 0.000 NULL NULL - no_errors C11orf63 HGNC C9orf153 389766 genome.wustl.edu 37 9 88836483 88836483 + RNA SNP C C A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 9 88836483 88836483 C A SNP C9orf153 ENST00000469914 human ensembl 70_37 -1 known rna NULL NULL 0.000 - - - no_errors C9orf153 HGNC CCDC144B 284047 genome.wustl.edu 37 17 18454926 18454927 + RNA INS - - C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 17 18454926 18454927 - C INS CCDC144B ENST00000446853 human ensembl 70_37 -1 known rna NULL NULL 0.001:0.001 - - - no_errors CCDC144B HGNC CDH6 1004 genome.wustl.edu 37 5 31318086 31318086 + Missense_Mutation SNP A A G TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 5 31318086 31318086 A G SNP CDH6 ENST00000514738 human ensembl 70_37 +1 putative missense c.1772 p.Y591C 0.999 NULL pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH6 HGNC CDH6 1004 genome.wustl.edu 37 5 31318086 31318086 + Missense_Mutation SNP A A G TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 5 31318086 31318086 A G SNP CDH6 ENST00000514738 human ensembl 70_37 +1 putative missense c.1772 p.Y591C 0.999 NULL pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH6 HGNC CEACAMP3 1092 genome.wustl.edu 37 19 42111668 42111668 + RNA SNP G G C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 19 42111668 42111668 G C SNP CEACAMP3 ENST00000473762 human ensembl 70_37 +1 known rna NULL NULL 0.001 - - - no_errors CEACAMP3 HGNC CEP250 11190 genome.wustl.edu 37 20 34054842 34054842 + Missense_Mutation SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 20 34054842 34054842 C T SNP CEP250 ENST00000397527 human ensembl 70_37 +1 known missense c.544 p.R182W 1.000 NULL superfamily_Prefoldin - no_errors CEP250 HGNC CGN 57530 genome.wustl.edu 37 1 151508792 151508792 + Missense_Mutation SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 1 151508792 151508792 C T SNP CGN ENST00000271636 human ensembl 70_37 +1 known missense c.3277 p.R1093W 0.966 pfam_Myosin_tail pfam_Myosin_tail - no_errors CGN HGNC CGN 57530 genome.wustl.edu 37 1 151508792 151508792 + Missense_Mutation SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 1 151508792 151508792 C T SNP CGN ENST00000271636 human ensembl 70_37 +1 known missense c.3277 p.R1093W 0.966 pfam_Myosin_tail pfam_Myosin_tail - no_errors CGN HGNC COL8A1 1295 genome.wustl.edu 37 3 99514229 99514229 + Missense_Mutation SNP G G C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 3 99514229 99514229 G C SNP COL8A1 ENST00000261037 human ensembl 70_37 +1 known missense c.1484 p.G495A 1.000 pfam_Collagen pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q - no_errors COL8A1 HGNC CTBS 1486 genome.wustl.edu 37 1 85040024 85040024 + Silent SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 1 85040024 85040024 C T SNP CTBS ENST00000370630 human ensembl 70_37 -1 known silent c.75 p.L25 0.006 NULL pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II - no_errors CTBS HGNC CXXC1P1 392459 genome.wustl.edu 37 X 47612412 47612412 + RNA SNP C C A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 X 47612412 47612412 C A SNP CXXC1P1 ENST00000589302 human ensembl 70_37 +1 known rna NULL NULL 0.106 - - - no_errors CXXC1P1 HGNC DCAF8L2 347442 genome.wustl.edu 37 X 27766524 27766524 + Silent SNP C C A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 X 27766524 27766524 C A SNP DCAF8L2 ENST00000451261 human ensembl 70_37 +1 known silent c.1512 p.I504 0.014 superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors DCAF8L2 HGNC DGKB 1607 genome.wustl.edu 37 7 14661096 14661096 + Missense_Mutation SNP C C A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 7 14661096 14661096 C A SNP DGKB ENST00000258767 human ensembl 70_37 -1 known missense c.1194 p.K398N 1.000 NULL pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd - no_errors DGKB HGNC DLEU2 8847 genome.wustl.edu 37 13 50618817 50618817 + RNA SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 13 50618817 50618817 C T SNP DLEU2 ENST00000235290 human ensembl 70_37 -1 known rna NULL NULL 0.000 - - - no_errors DLEU2 HGNC ENOSF1 55556 genome.wustl.edu 37 18 690729 690730 + Frame_Shift_Ins INS - - T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 18 690729 690730 - T INS ENOSF1 ENST00000581475 human ensembl 70_37 -1 known frame_shift_ins c.440_439 p.T147fs 0.009:0.019 NULL pfam_Mandelate_racemase_N - no_errors ENOSF1 HGNC ENSG00000225731 0 genome.wustl.edu 37 21 44154376 44154376 + RNA SNP G G T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 21 44154376 44154376 G T SNP ENSG00000225731 ENST00000437426 human ensembl 70_37 -1 known rna NULL NULL 0.000 - - - no_errors AP001627.1 Clone_based_vega_gene ENSG00000230880 0 genome.wustl.edu 37 1 142619328 142619328 + RNA SNP G G A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 1 142619328 142619328 G A SNP ENSG00000230880 ENST00000411746 human ensembl 70_37 +1 known rna NULL NULL 0.075 - - - no_errors AL583842.3 Clone_based_vega_gene ENSG00000230891 0 genome.wustl.edu 37 3 25913294 25913294 + RNA SNP C C A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 3 25913294 25913294 C A SNP ENSG00000230891 ENST00000496997 human ensembl 70_37 -1 known rna NULL NULL 0.269 - - - no_errors AC103588.1 Clone_based_vega_gene ENSG00000231236 0 genome.wustl.edu 37 21 28732863 28732863 + RNA SNP G G T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 21 28732863 28732863 G T SNP ENSG00000231236 ENST00000420186 human ensembl 70_37 -1 known rna NULL NULL 0.004 - - - no_errors AP001604.3 Clone_based_vega_gene ENSG00000231794 0 genome.wustl.edu 37 7 134884911 134884911 + RNA SNP G G T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 7 134884911 134884911 G T SNP ENSG00000231794 ENST00000412549 human ensembl 70_37 +1 known rna NULL NULL 0.044 - - - no_errors AC009542.2 Clone_based_vega_gene ENSG00000231937 0 genome.wustl.edu 37 X 151332919 151332919 + RNA SNP G G T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 X 151332919 151332919 G T SNP ENSG00000231937 ENST00000453915 human ensembl 70_37 +1 known rna NULL NULL 0.000 - - - no_errors RP11-329E24.6 Clone_based_vega_gene ENSG00000233421 0 genome.wustl.edu 37 1 16861068 16861068 + RNA SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 1 16861068 16861068 C T SNP ENSG00000233421 ENST00000415386 human ensembl 70_37 -1 known rna NULL NULL 0.000 - - - no_errors RP5-875O13.1 Clone_based_vega_gene ENSG00000239471 0 genome.wustl.edu 37 15 20301149 20301149 + RNA SNP G G A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 15 20301149 20301149 G A SNP ENSG00000239471 ENST00000492309 human ensembl 70_37 -1 novel rna NULL NULL 0.078 - - - no_errors Metazoa_SRP RFAM ENSG00000248464 0 genome.wustl.edu 37 5 44413408 44413408 + RNA SNP C C A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 5 44413408 44413408 C A SNP ENSG00000248464 ENST00000502457 human ensembl 70_37 +1 known rna NULL NULL 0.000 - - - no_errors RP11-473L15.2 Clone_based_vega_gene ENSG00000249413 0 genome.wustl.edu 37 4 66864981 66864981 + RNA SNP G G C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 4 66864981 66864981 G C SNP ENSG00000249413 ENST00000508572 human ensembl 70_37 +1 known rna NULL NULL 0.112 - - - no_errors RP11-25H12.1 Clone_based_vega_gene ENSG00000250027 0 genome.wustl.edu 37 4 164040740 164040740 + RNA SNP G G T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 4 164040740 164040740 G T SNP ENSG00000250027 ENST00000503478 human ensembl 70_37 +1 putative rna NULL NULL 0.001 - - - no_errors RP11-563E2.2 Clone_based_vega_gene ENSG00000250383 0 genome.wustl.edu 37 5 108153913 108153913 + RNA SNP G G T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 5 108153913 108153913 G T SNP ENSG00000250383 ENST00000510935 human ensembl 70_37 -1 known rna NULL NULL 0.003 - - - no_errors CTD-2197I11.1 Clone_based_vega_gene ENSG00000250383 0 genome.wustl.edu 37 5 108153944 108153944 + RNA SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 5 108153944 108153944 C T SNP ENSG00000250383 ENST00000510935 human ensembl 70_37 -1 known rna NULL NULL 0.002 - - - no_errors CTD-2197I11.1 Clone_based_vega_gene ENSG00000251445 0 genome.wustl.edu 37 4 169932069 169932069 + RNA SNP C C A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 4 169932069 169932069 C A SNP ENSG00000251445 ENST00000506933 human ensembl 70_37 +1 putative rna NULL NULL 0.000 - - - no_errors RP11-483A20.3 Clone_based_vega_gene ENSG00000254026 0 genome.wustl.edu 37 8 20820383 20820383 + RNA SNP G G A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 8 20820383 20820383 G A SNP ENSG00000254026 ENST00000519605 human ensembl 70_37 +1 known rna NULL NULL 0.012 - - - no_errors RP11-369E15.2 Clone_based_vega_gene ENSG00000255178 0 genome.wustl.edu 37 11 80473150 80473150 + RNA SNP A A T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 11 80473150 80473150 A T SNP ENSG00000255178 ENST00000526840 human ensembl 70_37 -1 known rna NULL NULL 0.033 - - - no_errors RP11-686G23.2 Clone_based_vega_gene ENSG00000260278 0 genome.wustl.edu 37 4 79695440 79695440 + RNA SNP A A T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 4 79695440 79695440 A T SNP ENSG00000260278 ENST00000564925 human ensembl 70_37 -1 known rna NULL NULL 0.368 - - - no_errors RP11-109G23.3 Clone_based_vega_gene ENSG00000260512 0 genome.wustl.edu 37 11 106546453 106546453 + RNA SNP G G A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 11 106546453 106546453 G A SNP ENSG00000260512 ENST00000561520 human ensembl 70_37 -1 known rna NULL NULL 0.000 - - - no_errors RP13-259F12.2 Clone_based_vega_gene ENSG00000261135 0 genome.wustl.edu 37 1 16842000 16842000 + RNA SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 1 16842000 16842000 C T SNP ENSG00000261135 ENST00000562878 human ensembl 70_37 +1 known rna NULL NULL 0.116 - - - no_errors RP4-798A10.7 Clone_based_vega_gene ENSG00000261478 0 genome.wustl.edu 37 15 90052228 90052228 + RNA SNP T T C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 15 90052228 90052228 T C SNP ENSG00000261478 ENST00000567484 human ensembl 70_37 +1 known rna NULL NULL 0.000 - - - no_errors RP11-429B14.4 Clone_based_vega_gene ENSG00000261478 0 genome.wustl.edu 37 15 90052252 90052252 + RNA SNP G G A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 15 90052252 90052252 G A SNP ENSG00000261478 ENST00000567484 human ensembl 70_37 +1 known rna NULL NULL 0.000 - - - no_errors RP11-429B14.4 Clone_based_vega_gene ENSG00000262415 0 genome.wustl.edu 37 17 80632513 80632514 + RNA INS - - A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 17 80632513 80632514 - A INS ENSG00000262415 ENST00000574080 human ensembl 70_37 -1 known rna NULL NULL 0.172:0.166 - - - no_errors RP11-388C12.2 Clone_based_vega_gene ENSG00000266921 0 genome.wustl.edu 37 19 44502013 44502013 + RNA SNP G G A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 19 44502013 44502013 G A SNP ENSG00000266921 ENST00000586860 human ensembl 70_37 -1 known rna NULL NULL 0.750 - - - no_errors RP11-15A1.7 Clone_based_vega_gene ENSG00000267049 0 genome.wustl.edu 37 19 36261759 36261759 + RNA SNP C C G TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 19 36261759 36261759 C G SNP ENSG00000267049 ENST00000589397 human ensembl 70_37 -1 known rna NULL NULL 0.003 - - - no_errors AC002398.13 Clone_based_vega_gene ENSG00000268621 0 genome.wustl.edu 37 19 46693398 46693398 + RNA SNP G G C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 19 46693398 46693398 G C SNP ENSG00000268621 ENST00000598518 human ensembl 70_37 -1 known rna NULL NULL 0.001 - - - no_errors AC006262.5 Clone_based_vega_gene ENSG00000268802 0 genome.wustl.edu 37 19 54863047 54863047 + RNA SNP C C A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 19 54863047 54863047 C A SNP ENSG00000268802 ENST00000596234 human ensembl 70_37 -1 known rna NULL NULL 0.008 - - - no_errors CTD-2587H19.1 Clone_based_vega_gene EP400 57634 genome.wustl.edu 37 12 132547138 132547138 + Silent SNP A A G TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 12 132547138 132547138 A G SNP EP400 ENST00000333577 human ensembl 70_37 +1 known silent c.8334 p.Q2778 0.021 NULL pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors EP400 HGNC NR2F1-AS1 441094 genome.wustl.edu 37 5 92879247 92879248 + RNA INS - - A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 5 92879247 92879248 - A INS FLJ42709 ENST00000503134 human ensembl 70_37 -1 known rna NULL NULL 0.009:0.001 - - - no_errors RP11-65F13.2 Clone_based_vega_gene NR2F1-AS1 441094 genome.wustl.edu 37 5 92879626 92879626 + RNA SNP C C A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 5 92879626 92879626 C A SNP FLJ42709 ENST00000503134 human ensembl 70_37 -1 known rna NULL NULL 0.060 - - - no_errors RP11-65F13.2 Clone_based_vega_gene FYB 2533 genome.wustl.edu 37 5 39269864 39269864 + RNA SNP A A G TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 5 39269864 39269864 A G SNP FYB ENST00000503065 human ensembl 70_37 -1 known rna NULL NULL 0.029 - - - no_errors FYB HGNC GLI2 2736 genome.wustl.edu 37 2 121744182 121744182 + Missense_Mutation SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 2 121744182 121744182 C T SNP GLI2 ENST00000361492 human ensembl 70_37 +1 known missense c.2285 p.P762L 1.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors GLI2 HGNC GLI2 2736 genome.wustl.edu 37 2 121744182 121744182 + Missense_Mutation SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 2 121744182 121744182 C T SNP GLI2 ENST00000361492 human ensembl 70_37 +1 known missense c.2285 p.P762L 1.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors GLI2 HGNC COLGALT1 79709 genome.wustl.edu 37 19 17666677 17666677 + Missense_Mutation SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 19 17666677 17666677 C T SNP GLT25D1 ENST00000252599 human ensembl 70_37 +1 known missense c.155 p.P52L 1.000 NULL pfam_Glyco_trans_25 - no_errors GLT25D1 HGNC GRASP 160622 genome.wustl.edu 37 12 52408605 52408605 + Silent SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 12 52408605 52408605 C T SNP GRASP ENST00000293662 human ensembl 70_37 +1 known silent c.810 p.R270 0.797 NULL pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors GRASP HGNC HBP1 26959 genome.wustl.edu 37 7 106826854 106826854 + Missense_Mutation SNP G G T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 7 106826854 106826854 G T SNP HBP1 ENST00000222574 human ensembl 70_37 +1 known missense c.589 p.D197Y 1.000 NULL pfam_Ataxin-1_HBP1,pfam_HMG_superfamily,superfamily_Ataxin-1_HBP1,superfamily_HMG_superfamily,smart_Ataxin_AXH_dom,smart_HMG_superfamily,pfscan_Ataxin-1_HBP1,pfscan_HMG_superfamily - no_errors HBP1 HGNC HPCAL1 3241 genome.wustl.edu 37 2 10566867 10566867 + Missense_Mutation SNP G G C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 2 10566867 10566867 G C SNP HPCAL1 ENST00000307845 human ensembl 70_37 +1 known missense c.502 p.E168Q 1.000 pfam_EF-hand,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin pfam_EF-hand,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin - no_errors HPCAL1 HGNC HPCAL1 3241 genome.wustl.edu 37 2 10566867 10566867 + Missense_Mutation SNP G G C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 2 10566867 10566867 G C SNP HPCAL1 ENST00000307845 human ensembl 70_37 +1 known missense c.502 p.E168Q 1.000 pfam_EF-hand,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin pfam_EF-hand,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin - no_errors HPCAL1 HGNC IDO2 169355 genome.wustl.edu 37 8 39836100 39836100 + RNA SNP T T C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 8 39836100 39836100 T C SNP IDO2 ENST00000421393 human ensembl 70_37 +1 known rna NULL NULL 0.000 - - - no_errors IDO2 HGNC KCNQ1OT1 10984 genome.wustl.edu 37 11 2694379 2694379 + RNA SNP G G C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 11 2694379 2694379 G C SNP KCNQ1OT1 ENST00000597346 human ensembl 70_37 -1 known rna NULL NULL 0.000 - - - no_errors KCNQ1OT1 HGNC KCNQ1OT1 10984 genome.wustl.edu 37 11 2696602 2696602 + RNA SNP G G C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 11 2696602 2696602 G C SNP KCNQ1OT1 ENST00000597346 human ensembl 70_37 -1 known rna NULL NULL 0.004 - - - no_errors KCNQ1OT1 HGNC KIRREL3-AS3 283165 genome.wustl.edu 37 11 126873015 126873016 + RNA INS - - A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 11 126873015 126873016 - A INS KIRREL3-AS3 ENST00000525678 human ensembl 70_37 +1 known rna NULL NULL 0.001:0.021 - - - no_errors KIRREL3-AS3 HGNC LILRB3 11025 genome.wustl.edu 37 19 54722725 54722725 + RNA SNP G G C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 19 54722725 54722725 G C SNP LILRB3 ENST00000469273 human ensembl 70_37 -1 known rna NULL NULL 0.008 - - - no_errors LILRB3 HGNC LILRB3 11025 genome.wustl.edu 37 19 54722725 54722725 + RNA SNP G G C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 19 54722725 54722725 G C SNP LILRB3 ENST00000469273 human ensembl 70_37 -1 known rna NULL NULL 0.008 - - - no_errors LILRB3 HGNC LIN54 132660 genome.wustl.edu 37 4 83905636 83905636 + Nonsense_Mutation SNP G G T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 4 83905636 83905636 G T SNP LIN54 ENST00000340417 human ensembl 70_37 -1 known nonsense c.362 p.S121* 1.000 NULL pfam_CRC - no_errors LIN54 HGNC LOC100133077 100133077 genome.wustl.edu 37 9 140785159 140785159 + RNA SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 9 140785159 140785159 C T SNP LOC100133077 ENST00000371390 human ensembl 70_37 -1 known rna NULL NULL 0.034 - - - no_errors RP11-188C12.3 Clone_based_vega_gene LOC100996524 100996524 genome.wustl.edu 37 22 50117569 50117570 + RNA INS - - TATA TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 22 50117569 50117570 - TATA INS LOC100996524 ENST00000447372 human ensembl 70_37 -1 known rna NULL NULL 0.001:0.001 - - - no_errors RP5-983L19.2 Clone_based_vega_gene LOC101060037 101060037 genome.wustl.edu 37 21 47612703 47612703 + Missense_Mutation SNP T T C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 21 47612703 47612703 T C SNP LOC101060037 ENST00000424538 human ensembl 70_37 -1 known missense c.610 p.T204A 0.067 superfamily_WD40_repeat_dom superfamily_WD40_repeat_dom - no_errors AP001468.1 Clone_based_ensembl_gene LOC645752 645752 genome.wustl.edu 37 15 78208261 78208261 + RNA SNP G G A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 15 78208261 78208261 G A SNP LOC645752 ENST00000563349 human ensembl 70_37 -1 known rna NULL NULL 0.004 - - - no_errors RP11-114H24.2 Clone_based_vega_gene LRFN1 57622 genome.wustl.edu 37 19 39805231 39805231 + Missense_Mutation SNP A A C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 19 39805231 39805231 A C SNP LRFN1 ENST00000248668 human ensembl 70_37 -1 known missense c.746 p.F249C 1.000 NULL pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors LRFN1 HGNC LRFN1 57622 genome.wustl.edu 37 19 39805231 39805231 + Missense_Mutation SNP A A C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 19 39805231 39805231 A C SNP LRFN1 ENST00000248668 human ensembl 70_37 -1 known missense c.746 p.F249C 1.000 NULL pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors LRFN1 HGNC LTN1 26046 genome.wustl.edu 37 21 30339080 30339080 + Missense_Mutation SNP G G T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 21 30339080 30339080 G T SNP LTN1 ENST00000361371 human ensembl 70_37 -1 known missense c.1733 p.S578Y 0.000 NULL pfam_Znf_C3HC4_RING-type,superfamily_ARM-type_fold,smart_Znf_RING-CH,pfscan_Znf_RING - no_errors LTN1 HGNC LINC00948 100507027 genome.wustl.edu 37 10 61498880 61498881 + RNA INS - - A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 10 61498880 61498881 - A INS M1 ENST00000598384 human ensembl 70_37 -1 known rna NULL NULL 0.064:0.062 - - - no_errors RP11-59J5.1 Clone_based_vega_gene MAP3K6 9064 genome.wustl.edu 37 1 27684232 27684232 + Missense_Mutation SNP C C G TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 1 27684232 27684232 C G SNP MAP3K6 ENST00000357582 human ensembl 70_37 -1 known missense c.3051 p.E1017D 0.091 NULL pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors MAP3K6 HGNC MAP3K6 9064 genome.wustl.edu 37 1 27684232 27684232 + Missense_Mutation SNP C C G TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 1 27684232 27684232 C G SNP MAP3K6 ENST00000357582 human ensembl 70_37 -1 known missense c.3051 p.E1017D 0.091 NULL pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors MAP3K6 HGNC MEOX2 4223 genome.wustl.edu 37 7 15725798 15725800 + In_Frame_Del DEL TGG TGG - TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 TGG TGG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 7 15725798 15725800 TGG - DEL MEOX2 ENST00000262041 human ensembl 70_37 -1 known in_frame_del c.230_228 p.H80in_frame_del 1.000:1.000:1.000 NULL pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa - no_errors MEOX2 HGNC MRPL3 11222 genome.wustl.edu 37 3 131220486 131220486 + Missense_Mutation SNP C C G TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 3 131220486 131220486 C G SNP MRPL3 ENST00000264995 human ensembl 70_37 -1 known missense c.166 p.E56Q 1.000 superfamily_Transl_elong_init/rib_B-barrel pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Ribosomal_L3_bac/org-type - no_errors MRPL3 HGNC MRPL3 11222 genome.wustl.edu 37 3 131220486 131220486 + Missense_Mutation SNP C C G TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 3 131220486 131220486 C G SNP MRPL3 ENST00000264995 human ensembl 70_37 -1 known missense c.166 p.E56Q 1.000 superfamily_Transl_elong_init/rib_B-barrel pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Ribosomal_L3_bac/org-type - no_errors MRPL3 HGNC MS4A14 84689 genome.wustl.edu 37 11 60172024 60172024 + Missense_Mutation SNP C C A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 11 60172024 60172024 C A SNP MS4A14 ENST00000525397 human ensembl 70_37 +1 known missense c.474 p.F158L 0.004 NULL pfam_CD20-like - no_errors MS4A14 HGNC MSRB2 22921 genome.wustl.edu 37 10 23384552 23384552 + Silent SNP C C G TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 10 23384552 23384552 C G SNP MSRB2 ENST00000376510 human ensembl 70_37 +1 known silent c.15 p.L5 0.012 NULL pfam_Met_Sox_Rdtase_MsrB,superfamily_Mss4-like,tigrfam_Met_Sox_Rdtase_MsrB - no_errors MSRB2 HGNC MYH9 4627 genome.wustl.edu 37 22 36689418 36689419 + In_Frame_Ins INS - - CCT TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 22 36689418 36689419 - CCT INS MYH9 ENST00000216181 human ensembl 70_37 -1 known in_frame_ins c.4052_4051 p.1351in_frame_insE 1.000:1.000 pfam_Myosin_tail pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYH9 HGNC MYH9 4627 genome.wustl.edu 37 22 36689418 36689419 + In_Frame_Ins INS - - CCT TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 22 36689418 36689419 - CCT INS MYH9 ENST00000216181 human ensembl 70_37 -1 known in_frame_ins c.4052_4051 p.1351in_frame_insE 1.000:1.000 pfam_Myosin_tail pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYH9 HGNC NLGN3 54413 genome.wustl.edu 37 X 70390007 70390008 + RNA INS - - CA TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 X 70390007 70390008 - CA INS NLGN3 ENST00000476589 human ensembl 70_37 +1 known rna NULL NULL 0.001:0.422 - - - no_errors NLGN3 HGNC NSD1 64324 genome.wustl.edu 37 5 176636673 176636673 + Missense_Mutation SNP G G T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 5 176636673 176636673 G T SNP NSD1 ENST00000439151 human ensembl 70_37 +1 known missense c.1273 p.V425F 1.000 NULL pfam_PWWP,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger - no_errors NSD1 HGNC OBP2A 29991 genome.wustl.edu 37 9 138439087 138439087 + Missense_Mutation SNP C C A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 9 138439087 138439087 C A SNP OBP2A ENST00000340780 human ensembl 70_37 +1 known missense c.270 p.F90L 0.006 pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland - no_errors OBP2A HGNC OPA1-AS1 100873941 genome.wustl.edu 37 3 193337406 193337406 + RNA SNP C C G TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 3 193337406 193337406 C G SNP OPA1-AS1 ENST00000433105 human ensembl 70_37 -1 known rna NULL NULL 0.000 - - - no_errors OPA1-AS1 HGNC PCDHA11 56138 genome.wustl.edu 37 5 140249108 140249108 + Silent SNP G G T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 5 140249108 140249108 G T SNP PCDHA11 ENST00000398640 human ensembl 70_37 +1 known silent c.420 p.L140 0.336 superfamily_Cadherin-like pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHA11 HGNC PCDHB12 56124 genome.wustl.edu 37 5 140589682 140589682 + Nonsense_Mutation SNP C C A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 5 140589682 140589682 C A SNP PCDHB12 ENST00000239450 human ensembl 70_37 +1 known nonsense c.1203 p.Y401* 0.650 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB12 HGNC PDZRN4 29951 genome.wustl.edu 37 12 41582515 41582515 + Silent SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 12 41582515 41582515 C T SNP PDZRN4 ENST00000402685 human ensembl 70_37 +1 known silent c.258 p.R86 1.000 superfamily_TRAF-like pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING - no_errors PDZRN4 HGNC PDZRN4 29951 genome.wustl.edu 37 12 41582515 41582515 + Silent SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 12 41582515 41582515 C T SNP PDZRN4 ENST00000402685 human ensembl 70_37 +1 known silent c.258 p.R86 1.000 superfamily_TRAF-like pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING - no_errors PDZRN4 HGNC PHLDB1 23187 genome.wustl.edu 37 11 118478396 118478397 + RNA INS - - C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 11 118478396 118478397 - C INS PHLDB1 ENST00000530708 human ensembl 70_37 +1 known rna NULL NULL 0.000:0.004 - - - no_errors PHLDB1 HGNC PLCB2-AS1 100874186 genome.wustl.edu 37 15 40592974 40592975 + RNA INS - - C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 15 40592974 40592975 - C INS PLCB2-AS1 ENST00000559520 human ensembl 70_37 +1 known rna NULL NULL 0.000:0.000 - - - no_errors PLCB2-AS1 HGNC POLR3F 10621 genome.wustl.edu 37 20 18464304 18464304 + RNA SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 20 18464304 18464304 C T SNP POLR3F ENST00000462997 human ensembl 70_37 +1 known rna NULL NULL 1.000 - - - no_errors POLR3F HGNC POTEE 445582 genome.wustl.edu 37 2 132022031 132022031 + Silent SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 2 132022031 132022031 C T SNP POTEE ENST00000356920 human ensembl 70_37 +1 known silent c.3003 p.G1001 1.000 pfam_Actin-like,smart_Actin-like pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-like - no_errors POTEE Uniprot_genename PRELID2 153768 genome.wustl.edu 37 5 145133734 145133734 + RNA SNP C C A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 5 145133734 145133734 C A SNP PRELID2 ENST00000515161 human ensembl 70_37 -1 putative rna NULL NULL 0.001 - - - no_errors PRELID2 HGNC PRRC2B 84726 genome.wustl.edu 37 9 134366255 134366255 + RNA SNP C C G TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 9 134366255 134366255 C G SNP PRRC2B ENST00000465931 human ensembl 70_37 +1 known rna NULL NULL 0.001 - - - no_errors PRRC2B HGNC PSG10P 653492 genome.wustl.edu 37 19 43348532 43348532 + RNA SNP A A G TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 19 43348532 43348532 A G SNP PSG10P ENST00000597171 human ensembl 70_37 -1 known rna NULL NULL 0.001 - - - no_errors PSG10P HGNC PSG10P 653492 genome.wustl.edu 37 19 43348532 43348532 + RNA SNP A A G TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 19 43348532 43348532 A G SNP PSG10P ENST00000597171 human ensembl 70_37 -1 known rna NULL NULL 0.001 - - - no_errors PSG10P HGNC RHOBTB3 22836 genome.wustl.edu 37 5 95067706 95067706 + Missense_Mutation SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 5 95067706 95067706 C T SNP RHOBTB3 ENST00000379982 human ensembl 70_37 +1 known missense c.146 p.T49M 0.999 NULL pfam_BTB_POZ,pfam_Small_GTPase,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like - no_errors RHOBTB3 HGNC RHOBTB3 22836 genome.wustl.edu 37 5 95067751 95067751 + Missense_Mutation SNP G G T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 5 95067751 95067751 G T SNP RHOBTB3 ENST00000379982 human ensembl 70_37 +1 known missense c.191 p.G64V 1.000 NULL pfam_BTB_POZ,pfam_Small_GTPase,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like - no_errors RHOBTB3 HGNC ROBO1 6091 genome.wustl.edu 37 3 78987932 78987932 + Missense_Mutation SNP C C G TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 3 78987932 78987932 C G SNP ROBO1 ENST00000464233 human ensembl 70_37 -1 known missense c.318 p.E106D 1.000 pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors ROBO1 HGNC ROBO1 6091 genome.wustl.edu 37 3 78987932 78987932 + Missense_Mutation SNP C C G TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 3 78987932 78987932 C G SNP ROBO1 ENST00000464233 human ensembl 70_37 -1 known missense c.318 p.E106D 1.000 pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors ROBO1 HGNC SGSM1 129049 genome.wustl.edu 37 22 25320198 25320198 + Missense_Mutation SNP G G A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 22 25320198 25320198 G A SNP SGSM1 ENST00000400359 human ensembl 70_37 +1 known missense c.3404 p.R1135Q 1.000 superfamily_Rab-GTPase-TBC_dom pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom - no_errors SGSM1 HGNC SGSM1 129049 genome.wustl.edu 37 22 25320198 25320198 + Missense_Mutation SNP G G A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 22 25320198 25320198 G A SNP SGSM1 ENST00000400359 human ensembl 70_37 +1 known missense c.3404 p.R1135Q 1.000 superfamily_Rab-GTPase-TBC_dom pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom - no_errors SGSM1 HGNC SNTG2 54221 genome.wustl.edu 37 2 1271203 1271203 + Missense_Mutation SNP G G A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 2 1271203 1271203 G A SNP SNTG2 ENST00000308624 human ensembl 70_37 +1 known missense c.1144 p.E382K 0.926 NULL pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors SNTG2 HGNC SNTG2 54221 genome.wustl.edu 37 2 1271203 1271203 + Missense_Mutation SNP G G A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 2 1271203 1271203 G A SNP SNTG2 ENST00000308624 human ensembl 70_37 +1 known missense c.1144 p.E382K 0.926 NULL pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors SNTG2 HGNC SRRT 51593 genome.wustl.edu 37 7 100482420 100482420 + Silent SNP G G A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 7 100482420 100482420 G A SNP SRRT ENST00000388793 human ensembl 70_37 +1 known silent c.1002 p.K334 1.000 NULL pfam_Arsenite-R_2,pfam_DUF3546 - no_errors SRRT HGNC TAF7L 54457 genome.wustl.edu 37 X 100538563 100538563 + Missense_Mutation SNP G G A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 X 100538563 100538563 G A SNP TAF7L ENST00000372907 human ensembl 70_37 -1 known missense c.412 p.R138C 0.910 pfam_TAFII55_prot_cons_reg pfam_TAFII55_prot_cons_reg - no_errors TAF7L HGNC TAF7L 54457 genome.wustl.edu 37 X 100538563 100538563 + Missense_Mutation SNP G G A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 X 100538563 100538563 G A SNP TAF7L ENST00000372907 human ensembl 70_37 -1 known missense c.412 p.R138C 0.910 pfam_TAFII55_prot_cons_reg pfam_TAFII55_prot_cons_reg - no_errors TAF7L HGNC TDRD1 56165 genome.wustl.edu 37 10 115985841 115985841 + Missense_Mutation SNP G G A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 10 115985841 115985841 G A SNP TDRD1 ENST00000251864 human ensembl 70_37 +1 known missense c.3041 p.G1014E 0.015 pfam_Tudor,smart_Tudor,pfscan_Tudor pfam_Tudor,pfam_Znf_MYND,smart_Tudor,pfscan_Tudor,pfscan_Znf_MYND - no_errors TDRD1 HGNC TMEM198B 440104 genome.wustl.edu 37 12 56226768 56226768 + RNA SNP G G A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 12 56226768 56226768 G A SNP TMEM198B ENST00000471276 human ensembl 70_37 +1 known rna NULL NULL 1.000 - - - no_errors TMEM198B HGNC TRA2A 29896 genome.wustl.edu 37 7 23552514 23552514 + Missense_Mutation SNP T T C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 7 23552514 23552514 T C SNP TRA2A ENST00000297071 human ensembl 70_37 -1 known missense c.524 p.E175G 1.000 pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors TRA2A HGNC TRA2A 29896 genome.wustl.edu 37 7 23552514 23552514 + Missense_Mutation SNP T T C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 7 23552514 23552514 T C SNP TRA2A ENST00000297071 human ensembl 70_37 -1 known missense c.524 p.E175G 1.000 pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors TRA2A HGNC TRAPPC9 83696 genome.wustl.edu 37 8 140893937 140893937 + RNA SNP C C G TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 8 140893937 140893937 C G SNP TRAPPC9 ENST00000522504 human ensembl 70_37 -1 putative rna NULL NULL 0.129 - - - no_errors TRAPPC9 HGNC UBE4A 9354 genome.wustl.edu 37 11 118267042 118267042 + Missense_Mutation SNP C C A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 11 118267042 118267042 C A SNP UBE4A ENST00000431736 human ensembl 70_37 +1 known missense c.3109 p.P1037T 1.000 pfam_Ubox_domain,smart_Ubox_domain pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain - no_errors UBE4A HGNC UNG 7374 genome.wustl.edu 37 12 109537062 109537062 + Silent SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 12 109537062 109537062 C T SNP UNG ENST00000242576 human ensembl 70_37 +1 known silent c.408 p.T136 0.304 superfamily_Uracil-DNA_glycosylase-like,tigrfam_Ura_DNA_glycsylse pfam_Uracil-DNA_glycosylase-like,superfamily_Uracil-DNA_glycosylase-like,tigrfam_Ura_DNA_glycsylse - no_errors UNG HGNC UNG 7374 genome.wustl.edu 37 12 109537062 109537062 + Silent SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 12 109537062 109537062 C T SNP UNG ENST00000242576 human ensembl 70_37 +1 known silent c.408 p.T136 0.304 superfamily_Uracil-DNA_glycosylase-like,tigrfam_Ura_DNA_glycsylse pfam_Uracil-DNA_glycosylase-like,superfamily_Uracil-DNA_glycosylase-like,tigrfam_Ura_DNA_glycsylse - no_errors UNG HGNC WASH3P 374666 genome.wustl.edu 37 15 102516413 102516413 + RNA SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 15 102516413 102516413 C T SNP WASH3P ENST00000557932 human ensembl 70_37 +1 known rna NULL NULL 0.999 - - - no_errors WASH3P HGNC WDR17 116966 genome.wustl.edu 37 4 177046324 177046324 + Missense_Mutation SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 4 177046324 177046324 C T SNP WDR17 ENST00000280190 human ensembl 70_37 +1 known missense c.680 p.T227M 0.999 superfamily_WD40_repeat_dom,smart_WD40_repeat pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors WDR17 HGNC WDR17 116966 genome.wustl.edu 37 4 177046324 177046324 + Missense_Mutation SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 4 177046324 177046324 C T SNP WDR17 ENST00000280190 human ensembl 70_37 +1 known missense c.680 p.T227M 0.999 superfamily_WD40_repeat_dom,smart_WD40_repeat pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors WDR17 HGNC WDR27 253769 genome.wustl.edu 37 6 169959695 169959695 + RNA SNP C C A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 6 169959695 169959695 C A SNP WDR27 ENST00000546525 human ensembl 70_37 -1 known rna NULL NULL 0.004 - - - no_errors WDR27 HGNC WDR49 151790 genome.wustl.edu 37 3 167196719 167196719 + Missense_Mutation SNP C C A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 3 167196719 167196719 C A SNP WDR49 ENST00000308378 human ensembl 70_37 -1 known missense c.2041 p.A681S 1.000 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors WDR49 HGNC WDR49 151790 genome.wustl.edu 37 3 167196719 167196719 + Missense_Mutation SNP C C A TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 3 167196719 167196719 C A SNP WDR49 ENST00000308378 human ensembl 70_37 -1 known missense c.2041 p.A681S 1.000 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors WDR49 HGNC WNT10A 80326 genome.wustl.edu 37 2 219764059 219764060 + RNA INS - - T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 2 219764059 219764060 - T INS WNT10A ENST00000489887 human ensembl 70_37 +1 putative rna NULL NULL 0.001:0.048 - - - no_errors WNT10A HGNC WWC1 23286 genome.wustl.edu 37 5 167881043 167881045 + In_Frame_Del DEL GGA GGA - TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 GGA GGA Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 5 167881043 167881045 GGA - DEL WWC1 ENST00000265293 human ensembl 70_37 +1 known in_frame_del c.2596_2598 p.G866in_frame_del 0.441:0.365:0.522 NULL pfam_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP - no_errors WWC1 HGNC ZDHHC23 254887 genome.wustl.edu 37 3 113681778 113681778 + RNA SNP T T C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 3 113681778 113681778 T C SNP ZDHHC23 ENST00000488129 human ensembl 70_37 +1 putative rna NULL NULL 0.271 - - - no_errors ZDHHC23 HGNC ZFHX4 79776 genome.wustl.edu 37 8 77766275 77766275 + Missense_Mutation SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 8 77766275 77766275 C T SNP ZFHX4 ENST00000521891 human ensembl 70_37 +1 known missense c.7118 p.A2373V 0.999 NULL pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2 - no_errors ZFHX4 HGNC ZFHX4 79776 genome.wustl.edu 37 8 77766275 77766275 + Missense_Mutation SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 8 77766275 77766275 C T SNP ZFHX4 ENST00000521891 human ensembl 70_37 +1 known missense c.7118 p.A2373V 0.999 NULL pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2 - no_errors ZFHX4 HGNC ZNF334 55713 genome.wustl.edu 37 20 45130587 45130587 + Missense_Mutation SNP T T C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 20 45130587 45130587 T C SNP ZNF334 ENST00000347606 human ensembl 70_37 -1 known missense c.1391 p.N464S 0.000 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF334 HGNC ZNF334 55713 genome.wustl.edu 37 20 45130587 45130587 + Missense_Mutation SNP T T C TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 20 45130587 45130587 T C SNP ZNF334 ENST00000347606 human ensembl 70_37 -1 known missense c.1391 p.N464S 0.000 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF334 HGNC ZNF404 342908 genome.wustl.edu 37 19 44378036 44378036 + Missense_Mutation SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 19 44378036 44378036 C T SNP ZNF404 ENST00000587539 human ensembl 70_37 -1 known missense c.330 p.M110I 0.000 NULL pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF404 HGNC ZNF404 342908 genome.wustl.edu 37 19 44378036 44378036 + Missense_Mutation SNP C C T TCGA-C5-A0TN-01A-21D-A14W-08 TCGA-C5-A0TN-10B-01D-A14W-08 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 1a006bbb-6b95-4d82-8d1f-1b416a803c06 7a14d340-4758-457c-8fb0-6239640621b8 19 44378036 44378036 C T SNP ZNF404 ENST00000587539 human ensembl 70_37 -1 known missense c.330 p.M110I 0.000 NULL pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF404 HGNC