Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All BAP1 0 genome.wustl.edu 37 3 52440862 52440862 + Missense_Mutation SNP G G C TCGA-HN-A2OB-01A-21D-A27P-09 TCGA-HN-A2OB-10B-01D-A27P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c888118-477d-4f12-afb7-653f05afa824 d739bf12-a886-410b-bc7b-22edf99c393d 3 52440862 52440862 G C SNP BAP1 ENST00000460680 human ensembl 69_37n -1 known missense c.642 p.I214M 0.109 pfam_Peptidase_C12 pfam_Peptidase_C12,prints_Peptidase_C12 - no_errors BAP1 HGNC ENSG00000163930 58 0 0.00 38 12 24.00 - - - C1GALT1C1 0 genome.wustl.edu 37 X 119760370 119760370 + Missense_Mutation SNP A A T TCGA-HN-A2OB-01A-21D-A27P-09 TCGA-HN-A2OB-10B-01D-A27P-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c888118-477d-4f12-afb7-653f05afa824 d739bf12-a886-410b-bc7b-22edf99c393d X 119760370 119760370 A T SNP C1GALT1C1 ENST00000304661 human ensembl 69_37n -1 known missense c.652 p.S218T 0.953 NULL NULL - no_errors C1GALT1C1 HGNC ENSG00000171155 69 0 0.00 59 7 10.61 - - - DNTT 0 genome.wustl.edu 37 10 98092260 98092260 + Missense_Mutation SNP G G T TCGA-HN-A2OB-01A-21D-A27P-09 TCGA-HN-A2OB-10B-01D-A27P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c888118-477d-4f12-afb7-653f05afa824 d739bf12-a886-410b-bc7b-22edf99c393d 10 98092260 98092260 G T SNP DNTT ENST00000371174 human ensembl 69_37n +1 known missense c.1266 p.Q422H 0.975 smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase pfam_DNA_pol_lambd_fingers_domain,pfam_BRCT_dom,pfam_Nucleotidyltransferase,superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase,pfscan_BRCT_dom,prints_DNA_nucleotidylexotransferase,prints_DNA_pol_X,prints_DNA_pol_X_beta-like - no_errors DNTT HGNC ENSG00000107447 62 0 0.00 62 7 10.14 - - - FADS1 0 genome.wustl.edu 37 11 61582572 61582572 + RNA SNP G G A TCGA-HN-A2OB-01A-21D-A27P-09 TCGA-HN-A2OB-10B-01D-A27P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c888118-477d-4f12-afb7-653f05afa824 d739bf12-a886-410b-bc7b-22edf99c393d 11 61582572 61582572 G A SNP FADS1 ENST00000541683 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors FADS1 HGNC ENSG00000149485 114 0 0.00 59 22 27.16 - - - HTT 0 genome.wustl.edu 37 4 3221994 3221994 + Missense_Mutation SNP A A C TCGA-HN-A2OB-01A-21D-A27P-09 TCGA-HN-A2OB-10B-01D-A27P-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c888118-477d-4f12-afb7-653f05afa824 d739bf12-a886-410b-bc7b-22edf99c393d 4 3221994 3221994 A C SNP HTT ENST00000355072 human ensembl 69_37n +1 known missense c.7328 p.K2443T 1.000 NULL pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin - no_errors HTT HGNC ENSG00000197386 47 0 0.00 41 13 24.07 - - - OR52B2 0 genome.wustl.edu 37 11 6191379 6191379 + Missense_Mutation SNP G G A TCGA-HN-A2OB-01A-21D-A27P-09 TCGA-HN-A2OB-10B-01D-A27P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c888118-477d-4f12-afb7-653f05afa824 d739bf12-a886-410b-bc7b-22edf99c393d 11 6191379 6191379 G A SNP OR52B2 ENST00000530810 human ensembl 69_37n -1 known missense c.178 p.P60S 1.000 pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam - no_errors OR52B2 HGNC ENSG00000255307 63 0 0.00 61 10 14.08 - - - OR7D2 0 genome.wustl.edu 37 19 9297079 9297080 + Frame_Shift_Ins INS - - T TCGA-HN-A2OB-01A-21D-A27P-09 TCGA-HN-A2OB-10B-01D-A27P-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c888118-477d-4f12-afb7-653f05afa824 d739bf12-a886-410b-bc7b-22edf99c393d 19 9297079 9297080 - T INS OR7D2 ENST00000344248 human ensembl 69_37n +1 known frame_shift_ins c.622_623 p.P210fs 0.001:0.001 pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam - no_errors OR7D2 HGNC ENSG00000188000 65 0 0.00 34 9 20.93 - - - PIK3CA 0 genome.wustl.edu 37 3 178936082 178936082 + Missense_Mutation SNP G G A TCGA-HN-A2OB-01A-21D-A27P-09 TCGA-HN-A2OB-10B-01D-A27P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c888118-477d-4f12-afb7-653f05afa824 d739bf12-a886-410b-bc7b-22edf99c393d 3 178936082 178936082 G A SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.1624 p.E542K 1.000 pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 53 0 0.00 48 17 26.15 - - - RGS12 0 genome.wustl.edu 37 4 3319691 3319691 + Silent SNP G G A TCGA-HN-A2OB-01A-21D-A27P-09 TCGA-HN-A2OB-10B-01D-A27P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c888118-477d-4f12-afb7-653f05afa824 d739bf12-a886-410b-bc7b-22edf99c393d 4 3319691 3319691 G A SNP RGS12 ENST00000344733 human ensembl 69_37n +1 known silent c.1794 p.P598 0.128 NULL pfam_Raf-like_ras-bd,pfam_Regulat_G_prot_signal,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTyr_interaction_dom,smart_Regulat_G_prot_signal,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTyr_interaction_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal - no_errors RGS12 HGNC ENSG00000159788 56 0 0.00 35 4 10.26 - - - RNF170 0 genome.wustl.edu 37 8 42729139 42729139 + Missense_Mutation SNP G G C TCGA-HN-A2OB-01A-21D-A27P-09 TCGA-HN-A2OB-10B-01D-A27P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c888118-477d-4f12-afb7-653f05afa824 d739bf12-a886-410b-bc7b-22edf99c393d 8 42729139 42729139 G C SNP RNF170 ENST00000527424 human ensembl 69_37n -1 known missense c.148 p.Q50E 1.000 NULL pfam_DUF1232,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING - no_errors RNF170 HGNC ENSG00000120925 57 0 0.00 55 8 12.70 - - - SPON1 0 genome.wustl.edu 37 11 14281248 14281248 + Splice_Site SNP G G A TCGA-HN-A2OB-01A-21D-A27P-09 TCGA-HN-A2OB-10B-01D-A27P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c888118-477d-4f12-afb7-653f05afa824 d739bf12-a886-410b-bc7b-22edf99c393d 11 14281248 14281248 G A SNP SPON1 ENST00000310358 human ensembl 69_37n +1 known splice_site c.NULL NULL 1.000 - - - no_errors SPON1 HGNC ENSG00000152268 91 0 0 59 9 13.24 - - - SPON1 0 genome.wustl.edu 37 11 14281248 14281248 + Splice_Site SNP G G A TCGA-HN-A2OB-01A-21D-A27P-09 TCGA-HN-A2OB-10B-01D-A27P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c888118-477d-4f12-afb7-653f05afa824 d739bf12-a886-410b-bc7b-22edf99c393d 11 14281248 14281248 G A SNP SPON1 ENST00000310358 human ensembl 69_37n +1 known splice_site c.NULL NULL 1.000 - - - no_errors SPON1 HGNC ENSG00000152268 91 0 0.00 59 9 13.24 - - - SRM 0 genome.wustl.edu 37 1 11116774 11116774 + Missense_Mutation SNP G G A TCGA-HN-A2OB-01A-21D-A27P-09 TCGA-HN-A2OB-10B-01D-A27P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c888118-477d-4f12-afb7-653f05afa824 d739bf12-a886-410b-bc7b-22edf99c393d 1 11116774 11116774 G A SNP SRM ENST00000376957 human ensembl 69_37n -1 known missense c.422 p.A141V 1.000 pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase,tigrfam_Spermidine/spermine_synthase pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase,tigrfam_Spermidine/spermine_synthase - no_errors SRM HGNC ENSG00000116649 65 0 0.00 50 14 21.88 - - -