Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All CSPP1 0 genome.wustl.edu 37 8 67988761 67988761 + Silent SNP C C T TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 8 67988761 67988761 C T SNP CSPP1 ENST00000262210 human ensembl 69_37n +1 known silent c.252 p.I84 1.000 NULL NULL - no_errors CSPP1 HGNC ENSG00000104218 44 0 0.00 91 20 18.02 - - - DDX52 0 genome.wustl.edu 37 17 35981486 35981486 + Missense_Mutation SNP C C A TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 17 35981486 35981486 C A SNP DDX52 ENST00000349699 human ensembl 69_37n -1 known missense c.1307 p.G436V 1.000 pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif - no_errors DDX52 HGNC ENSG00000141141 87 0 0.00 81 22 21.36 - - - DGAT1 0 genome.wustl.edu 37 8 145542158 145542158 + Silent SNP C C T TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 8 145542158 145542158 C T SNP DGAT1 ENST00000332324 human ensembl 69_37n -1 known silent c.540 p.A180 0.001 pfam_MBOAT_fam,superfamily_PEP-util_enz_mobile_dom pfam_MBOAT_fam,superfamily_PEP-util_enz_mobile_dom - no_errors DGAT1 HGNC ENSG00000185000 18 0 0.00 25 17 40.48 - - - EIF2AK1 0 genome.wustl.edu 37 7 6084237 6084237 + Missense_Mutation SNP T T A TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 7 6084237 6084237 T A SNP EIF2AK1 ENST00000199389 human ensembl 69_37n -1 known missense c.686 p.Y229F 1.000 pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors EIF2AK1 HGNC ENSG00000086232 26 0 0.00 21 36 63.16 - - - ELMO1 0 genome.wustl.edu 37 7 36934508 36934508 + Missense_Mutation SNP G G A TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 7 36934508 36934508 G A SNP ELMO1 ENST00000310758 human ensembl 69_37n -1 known missense c.1552 p.R518C 1.000 NULL pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold - no_errors ELMO1 HGNC ENSG00000155849 135 0 0.00 93 86 48.04 - - - GNL3L 0 genome.wustl.edu 37 X 54585017 54585017 + Missense_Mutation SNP C C T TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e X 54585017 54585017 C T SNP GNL3L ENST00000336470 human ensembl 69_37n +1 known missense c.1595 p.T532M 0.931 NULL pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,prints_GTP_binding_domain - no_errors GNL3L HGNC ENSG00000130119 42 0 0.00 38 21 35.59 - - - GOLGA8J 0 genome.wustl.edu 37 15 32686875 32686875 + Missense_Mutation SNP G G A TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 15 32686875 32686875 G A SNP GOLGA8J ENST00000512626 human ensembl 69_37n -1 novel missense c.1198 p.P400S 0.917 NULL NULL - no_errors RP13-395E19.1 Clone_based_vega_gene ENSG00000249931 14 0 0.00 12 12 50.00 - - - HLA-DRB1 0 genome.wustl.edu 37 6 32549452 32549452 + Missense_Mutation SNP C C G TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 6 32549452 32549452 C G SNP HLA-DRB1 ENST00000360004 human ensembl 69_37n -1 known missense c.534 p.Q178H 0.016 pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like - no_errors HLA-DRB1 HGNC ENSG00000196126 8 0 0.00 11 6 35.29 - - - ICAM3 0 genome.wustl.edu 37 19 10444840 10444840 + Frame_Shift_Del DEL A A - TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 19 10444840 10444840 A - DEL ICAM3 ENST00000160262 human ensembl 69_37n -1 known frame_shift_del c.1437 p.I479fs 0.031 NULL pfam_ICAM_N,smart_Ig_sub,pfscan_Ig-like,prints_ICAM_VCAM_N,prints_ICAM - no_errors ICAM3 HGNC ENSG00000076662 42 0 0.00 19 15 40.54 - - - KBTBD10 0 genome.wustl.edu 37 2 170366849 170366849 + Silent SNP C C T TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 2 170366849 170366849 C T SNP KBTBD10 ENST00000284669 human ensembl 69_37n +1 known silent c.561 p.S187 1.000 pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like - no_errors KBTBD10 HGNC ENSG00000239474 35 0 0.00 55 27 32.53 - - - KRTAP4-11 0 genome.wustl.edu 37 17 39274455 39274455 + Missense_Mutation SNP G G T TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 17 39274455 39274455 G T SNP KRTAP4-11 ENST00000391413 human ensembl 69_37n -1 known missense c.113 p.T38N 0.002 pfam_Keratin-assoc pfam_Keratin-assoc - no_errors KRTAP4-11 HGNC ENSG00000212721 33 0 0.00 92 23 20.00 - - - PCDHB12 0 genome.wustl.edu 37 5 140590325 140590325 + Missense_Mutation SNP G G A TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 5 140590325 140590325 G A SNP PCDHB12 ENST00000239450 human ensembl 69_37n +1 known missense c.1846 p.G616S 0.092 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB12 HGNC ENSG00000120328 13 0 0.00 17 8 32.00 - - - PMVK 0 genome.wustl.edu 37 1 154897637 154897637 + Missense_Mutation SNP T T A TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 1 154897637 154897637 T A SNP PMVK ENST00000368467 human ensembl 69_37n -1 known missense c.547 p.N183Y 0.018 pirsf_Pmev_kin_anim,tigrfam_Pmev_kin_anim pfam_Pmev_kin_anim,pirsf_Pmev_kin_anim,tigrfam_Pmev_kin_anim - no_errors PMVK HGNC ENSG00000163344 48 0 0.00 72 30 29.41 - - - PPP5C 0 genome.wustl.edu 37 19 46891947 46891947 + Missense_Mutation SNP C C T TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 19 46891947 46891947 C T SNP PPP5C ENST00000478046 human ensembl 69_37n +1 known missense c.1310 p.T437M 0.969 smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,prints_Ser/Thr-sp_prot-phosphatase pfam_Metallo_PEstase_dom,pfam_PPP_dom,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,prints_Ser/Thr-sp_prot-phosphatase,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region PPP5C HGNC ENSG00000011485 57 0 0.00 43 16 27.12 - - - PXDN 0 genome.wustl.edu 37 2 1687851 1687851 + Splice_Site SNP C C A TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 2 1687851 1687851 C A SNP PXDN ENST00000252804 human ensembl 69_37n -1 known splice_site c.488+1 e5+1 1.000 - - - no_errors PXDN HGNC ENSG00000130508 52 0 0.00 30 15 33.33 - - - SLC19A2 0 genome.wustl.edu 37 1 169446894 169446894 + Silent SNP T T G TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 1 169446894 169446894 T G SNP SLC19A2 ENST00000236137 human ensembl 69_37n -1 known silent c.306 p.L102 0.981 pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier - no_errors SLC19A2 HGNC ENSG00000117479 16 0 0.00 32 8 20.00 - - - SRPX2 0 genome.wustl.edu 37 X 99920275 99920275 + Missense_Mutation SNP C C T TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e X 99920275 99920275 C T SNP SRPX2 ENST00000373004 human ensembl 69_37n +1 known missense c.568 p.R190C 1.000 pfam_Hyalin,pfscan_Hyalin pfam_Hyalin,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,superfamily_Thioredoxin-like_fold,smart_Sushi_SCR_CCP,pfscan_Hyalin,pfscan_Sushi_SCR_CCP - no_errors SRPX2 HGNC ENSG00000102359 72 0 0.00 45 25 35.71 - - - TNC 0 genome.wustl.edu 37 9 117808755 117808755 + Missense_Mutation SNP C C T TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 9 117808755 117808755 C T SNP TNC ENST00000350763 human ensembl 69_37n -1 known missense c.5059 p.E1687K 1.000 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3 - no_errors TNC HGNC ENSG00000041982 87 0 0.00 51 23 31.08 - - - ZFP36L1 0 genome.wustl.edu 37 14 69257168 69257169 + Frame_Shift_Ins INS - - C TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 14 69257168 69257169 - C INS ZFP36L1 ENST00000336440 human ensembl 69_37n -1 known frame_shift_ins c.99_98 p.C34fs 0.993:0.997 pfam_Tis11B_N pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH - no_errors ZFP36L1 HGNC ENSG00000185650 25 0 0.00 15 8 34.78 - - - ZNF625 0 genome.wustl.edu 37 19 12251081 12251081 + Missense_Mutation SNP A A C TCGA-GM-A2DC-01A-11D-A18P-09 TCGA-GM-A2DC-10C-01D-A18P-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c38c65b0-3e79-4351-badc-922a01dbb9ce ca5e8f90-befe-401c-8897-34209b1b6e2e 19 12251081 12251081 A C SNP ZNF625 ENST00000430024 human ensembl 69_37n -1 known missense c.326 p.L109R 0.000 NULL pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box - no_errors ZNF625 HGNC ENSG00000213297 20 0 0.00 9 15 62.50 - - -