Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ADAM2 0 genome.wustl.edu 37 8 39695678 39695678 + Silent SNP G G A TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 8 39695678 39695678 G A SNP ADAM2 ENST00000265708 human ensembl 69_37n -1 known silent c.27 p.S9 0.001 NULL pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin - no_errors ADAM2 HGNC ENSG00000104755 59 0 0.00 65 10 13.33 - - - ARPP21 0 genome.wustl.edu 37 3 35833914 35833914 + Silent SNP C C A TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 3 35833914 35833914 C A SNP ARPP21 ENST00000417925 human ensembl 69_37n +1 known silent c.2076 p.G692 0.982 NULL pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd - no_errors ARPP21 HGNC ENSG00000172995 60 0 0.00 33 15 31.25 - - - CELSR2 0 genome.wustl.edu 37 1 109814957 109814957 + Missense_Mutation SNP T T C TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 1 109814957 109814957 T C SNP CELSR2 ENST00000271332 human ensembl 69_37n +1 known missense c.7984 p.S2662P 1.000 NULL pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like - no_errors CELSR2 HGNC ENSG00000143126 15 0 0.00 4 8 66.67 - - - CREBL2 0 genome.wustl.edu 37 12 12788868 12788868 + Missense_Mutation SNP G G T TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 12 12788868 12788868 G T SNP CREBL2 ENST00000228865 human ensembl 69_37n +1 known missense c.173 p.R58L 0.999 pfam_bZIP_2,pfam_bZIP_1 pfam_bZIP_2,pfam_bZIP_1 - no_errors CREBL2 HGNC ENSG00000111269 18 0 0.00 16 11 40.74 - - - DMBX1 0 genome.wustl.edu 37 1 46977791 46977791 + Silent SNP G G A TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 1 46977791 46977791 G A SNP DMBX1 ENST00000371956 human ensembl 69_37n +1 known silent c.774 p.S258 0.031 NULL pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain - no_errors DMBX1 HGNC ENSG00000197587 41 0 0.00 4 5 55.56 - - - DNAH1 0 genome.wustl.edu 37 3 52404645 52404645 + Missense_Mutation SNP C C A TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 3 52404645 52404645 C A SNP DNAH1 ENST00000420323 human ensembl 69_37n +1 known missense c.6411 p.N2137K 0.000 NULL pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA - no_errors DNAH1 HGNC ENSG00000114841 31 0 0.00 16 10 38.46 - - - GALNT8 0 genome.wustl.edu 37 12 4874615 4874615 + Missense_Mutation SNP G G A TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 12 4874615 4874615 G A SNP GALNT8 ENST00000252318 human ensembl 69_37n +1 known missense c.1664 p.R555H 0.132 pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin - no_errors GALNT8 HGNC ENSG00000130035 77 0 0.00 43 8 15.69 - - - GHRHR 0 genome.wustl.edu 37 7 31013744 31013744 + Missense_Mutation SNP G G A TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 7 31013744 31013744 G A SNP GHRHR ENST00000326139 human ensembl 69_37n +1 known missense c.742 p.A248T 0.820 pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_GHRH_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt_1 - no_errors GHRHR HGNC ENSG00000106128 31 0 0.00 10 16 61.54 - - - GOLGA8IP 0 genome.wustl.edu 37 15 23259835 23259835 + Missense_Mutation SNP C C T TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 15 23259835 23259835 C T SNP GOLGA8IP ENST00000450802 human ensembl 69_37n +1 known missense c.505 p.R169C 0.288 NULL NULL - no_errors GOLGA8IP HGNC ENSG00000153666 8 0 0.00 6 6 50.00 - - - GPC3 0 genome.wustl.edu 37 X 132887946 132887946 + Nonsense_Mutation SNP G G A TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 X 132887946 132887946 G A SNP GPC3 ENST00000394299 human ensembl 69_37n -1 known nonsense c.595 p.R199* 1.000 pfam_Glypican pfam_Glypican - no_errors GPC3 HGNC ENSG00000147257 139 0 0.00 126 31 19.75 - - - IGHG4 0 genome.wustl.edu 37 14 106092401 106092401 + Silent SNP A A G TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 14 106092401 106092401 A G SNP IGHG4 ENST00000390543 human ensembl 69_37n -1 known silent c.3 p.A1 0.002 NULL pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like - no_start_codon IGHG4 HGNC ENSG00000211892 17 0 0.00 16 6 27.27 - - - LBH 0 genome.wustl.edu 37 2 30457271 30457271 + Silent SNP C C T TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 2 30457271 30457271 C T SNP LBH ENST00000395323 human ensembl 69_37n +1 known silent c.27 p.C9 1.000 pirsf_LBH pirsf_LBH,prints_LBH - no_errors LBH HGNC ENSG00000213626 65 0 0.00 34 12 26.09 - - - MAGEA12 0 genome.wustl.edu 37 X 151900138 151900138 + Missense_Mutation SNP G G C TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 X 151900138 151900138 G C SNP MAGEA12 ENST00000357916 human ensembl 69_37n -1 known missense c.663 p.I221M 0.014 pfam_MAGE,pfscan_MAGE pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE - no_errors MAGEA12 HGNC ENSG00000213401 116 0 0.00 75 9 10.59 - - - MYT1L 0 genome.wustl.edu 37 2 1926290 1926290 + Silent SNP C C T TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 2 1926290 1926290 C T SNP MYT1L ENST00000399161 human ensembl 69_37n -1 known silent c.1251 p.S417 0.141 NULL pfam_Myelin_TF,pfam_Znf_C2HC - no_errors MYT1L HGNC ENSG00000186487 74 0 0.00 20 17 45.95 - - - OR51E2 0 genome.wustl.edu 37 11 4703421 4703421 + Missense_Mutation SNP G G A TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 11 4703421 4703421 G A SNP OR51E2 ENST00000396950 human ensembl 69_37n -1 known missense c.521 p.S174L 0.006 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR51E2 HGNC ENSG00000167332 11 0 0.00 20 16 44.44 - - - PIK3CA 0 genome.wustl.edu 37 3 178928086 178928087 + Frame_Shift_Ins INS - - G TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 3 178928086 178928087 - G INS PIK3CA ENST00000263967 human ensembl 69_37n +1 known frame_shift_ins c.1364_1365 p.L456fs 1.000:1.000 pfam_PI3K_C2_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 95 0 0.00 40 5 11.11 - - - SF3B1 0 genome.wustl.edu 37 2 198266834 198266834 + Missense_Mutation SNP T T C TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 2 198266834 198266834 T C SNP SF3B1 ENST00000335508 human ensembl 69_37n -1 known missense c.2098 p.K700E 1.000 superfamily_ARM-type_fold pfam_SF3b_su1,superfamily_ARM-type_fold - no_errors SF3B1 HGNC ENSG00000115524 24 0 0.00 8 13 61.90 - - - TBC1D3P5 0 genome.wustl.edu 37 17 25752519 25752519 + RNA SNP C C T TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 17 25752519 25752519 C T SNP TBC1D3P5 ENST00000586223 human ensembl 69_37n +1 known rna NULL NULL 0.001 - - - no_errors TBC1D3P5 HGNC ENSG00000266433 60 0 0.00 31 6 16.22 - - - USH1C 0 genome.wustl.edu 37 11 17518353 17518353 + Missense_Mutation SNP A A C TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 11 17518353 17518353 A C SNP USH1C ENST00000005226 human ensembl 69_37n -1 known missense c.2498 p.I833S 0.998 superfamily_PDZ,smart_PDZ pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors USH1C HGNC ENSG00000006611 33 0 0.00 15 5 25.00 - - - WDR66 0 genome.wustl.edu 37 12 122359385 122359385 + Frame_Shift_Del DEL C C - TCGA-EW-A1P5-01A-11D-A142-09 TCGA-EW-A1P5-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 84b4da42-9b73-4448-9185-a12857ab422f a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 12 122359385 122359385 C - DEL WDR66 ENST00000288912 human ensembl 69_37n +1 known frame_shift_del c.174 p.E59fs 0.000 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDR66 HGNC ENSG00000158023 25 0 0.00 18 5 20.83 - - -