Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All CDH1 0 genome.wustl.edu 37 16 68849641 68849642 + In_Frame_Ins INS - - ATA TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 16 68849641 68849642 - ATA INS CDH1 ENST00000261769 human ensembl 69_37n +1 known in_frame_ins c.1544_1545 p.FME516in_frame_ins* 0.000:0.000 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH1 HGNC ENSG00000039068 72 0 0.00 51 13 20.31 - - - CDR1 0 genome.wustl.edu 37 X 139865867 139865867 + Missense_Mutation SNP C C T TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea X 139865867 139865867 C T SNP CDR1 ENST00000370532 human ensembl 69_37n -1 known missense c.665 p.G222E 0.999 NULL NULL - no_errors CDR1 HGNC ENSG00000184258 94 0 0.00 107 17 13.71 - - - COMT 0 genome.wustl.edu 37 22 19956088 19956088 + Silent SNP G G T TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 22 19956088 19956088 G T SNP COMT ENST00000361682 human ensembl 69_37n +1 known silent c.645 p.V215 1.000 pfam_O-MeTrfase_3,pirsf_Catechol_O-MeTrfase_euk pfam_O-MeTrfase_3,pirsf_Catechol_O-MeTrfase_euk - no_errors COMT HGNC ENSG00000093010 40 0 0.00 35 4 10.26 - - - EPAS1 0 genome.wustl.edu 37 2 46524981 46524981 + RNA SNP G G A TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 2 46524981 46524981 G A SNP EPAS1 ENST00000467888 human ensembl 69_37n +1 putative rna NULL NULL 0.243 - - - no_errors EPAS1 HGNC ENSG00000116016 45 0 0.00 32 5 13.51 - - - EPB41 0 genome.wustl.edu 37 1 29445598 29445598 + RNA SNP A A G TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 1 29445598 29445598 A G SNP EPB41 ENST00000460378 human ensembl 69_37n +1 known rna NULL NULL 0.000 - - - no_errors EPB41 HGNC ENSG00000159023 9 0 0.00 5 4 44.44 - - - EXOC3L2 0 genome.wustl.edu 37 19 45735069 45735069 + Silent SNP G G A TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 19 45735069 45735069 G A SNP EXOC3L2 ENST00000252482 human ensembl 69_37n -1 known silent c.42 p.S14 0.339 pfam_Sec6 pfam_Sec6,superfamily_Tet_transcr_reg_TetR-rel_C - no_errors EXOC3L2 HGNC ENSG00000130201 53 0 0.00 71 20 21.98 - - - GABBR1 0 genome.wustl.edu 37 6 29598304 29598304 + Missense_Mutation SNP G G A TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 6 29598304 29598304 G A SNP GABBR1 ENST00000377034 human ensembl 69_37n -1 known missense c.406 p.H136Y 1.000 pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_Sushi_SCR_CCP,pfscan_GPCR_3_C - no_errors GABBR1 HGNC ENSG00000204681 45 0 0.00 24 9 27.27 - - - KIF20B 0 genome.wustl.edu 37 10 91474824 91474824 + Missense_Mutation SNP C C G TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 10 91474824 91474824 C G SNP KIF20B ENST00000416354 human ensembl 69_37n +1 known missense c.825 p.F275L 1.000 pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom - no_errors KIF20B HGNC ENSG00000138182 43 0 0.00 42 6 12.50 - - - LMBRD1 0 genome.wustl.edu 37 6 70500244 70500244 + Silent SNP G G A TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 6 70500244 70500244 G A SNP LMBRD1 ENST00000370577 human ensembl 69_37n -1 known silent c.190 p.L64 1.000 pfam_LMBR1-like_membr_prot pfam_LMBR1-like_membr_prot - no_errors LMBRD1 HGNC ENSG00000168216 56 0 0.00 56 11 16.42 - - - LRRC4B 0 genome.wustl.edu 37 19 51021608 51021608 + Silent SNP C C T TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 19 51021608 51021608 C T SNP LRRC4B ENST00000389201 human ensembl 69_37n -1 known silent c.1362 p.S454 0.967 smart_Ig_sub pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like - no_errors LRRC4B HGNC ENSG00000131409 50 0 0.00 77 13 14.44 - - - MYOF 0 genome.wustl.edu 37 10 95088666 95088666 + Missense_Mutation SNP G G C TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 10 95088666 95088666 G C SNP MYOF ENST00000359263 human ensembl 69_37n -1 known missense c.4985 p.S1662C 1.000 superfamily_C2_Ca/lipid-bd_dom_CaLB pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting - no_errors MYOF HGNC ENSG00000138119 87 0 0.00 89 20 18.35 - - - NSL1 0 genome.wustl.edu 37 1 212965024 212965024 + Missense_Mutation SNP C C G TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 1 212965024 212965024 C G SNP NSL1 ENST00000366977 human ensembl 69_37n -1 known missense c.82 p.V28L 0.005 NULL pfam_Kinetochore_Mis14 - no_errors NSL1 HGNC ENSG00000117697 81 0 0.00 91 18 16.51 - - - NXF2 0 genome.wustl.edu 37 X 101576790 101576790 + Missense_Mutation SNP C C T TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea X 101576790 101576790 C T SNP NXF2 ENST00000330252 human ensembl 69_37n +1 known missense c.1286 p.P429L 0.005 pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk pfam_Tap_RNA-bd,pfam_TAP_C_dom,pfam_NTF2,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk - no_errors NXF2 HGNC ENSG00000185554 82 0 0.00 91 20 18.02 - - - RDH8 0 genome.wustl.edu 37 19 10124259 10124259 + Missense_Mutation SNP C C T TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 19 10124259 10124259 C T SNP RDH8 ENST00000591589 human ensembl 69_37n +1 known missense c.146 p.P49L 0.493 pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pirsf_17beta_DH,prints_DHB_DH pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pirsf_17beta_DH,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH - no_errors RDH8 HGNC ENSG00000080511 38 0 0.00 37 7 15.91 - - - RUNX1 0 genome.wustl.edu 37 21 36164851 36164852 + Frame_Shift_Ins INS - - G TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 21 36164851 36164852 - G INS RUNX1 ENST00000300305 human ensembl 69_37n -1 known frame_shift_ins c.1024_1023 p.I341fs 1.000:1.000 pirsf_TF_Runt-rel_RUNX pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt - no_errors RUNX1 HGNC ENSG00000159216 16 0 0.00 28 7 20.00 - - - STAMBP 0 genome.wustl.edu 37 2 74072326 74072326 + Missense_Mutation SNP A A C TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 2 74072326 74072326 A C SNP STAMBP ENST00000339566 human ensembl 69_37n +1 known missense c.312 p.E104D 1.000 NULL pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1 - no_errors STAMBP HGNC ENSG00000124356 63 0 0.00 47 7 12.96 - - - TDRD9 0 genome.wustl.edu 37 14 104470647 104470647 + Missense_Mutation SNP C C G TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 14 104470647 104470647 C G SNP TDRD9 ENST00000409874 human ensembl 69_37n +1 known missense c.1556 p.P519R 0.966 pfscan_Helicase_C pfam_Helicase-assoc_dom,pfam_Tudor,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,smart_Tudor,pfscan_Tudor,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors TDRD9 HGNC ENSG00000156414 98 0 0.00 91 14 13.33 - - - UBA5 0 genome.wustl.edu 37 3 132389818 132389818 + Silent SNP G G C TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 3 132389818 132389818 G C SNP UBA5 ENST00000356232 human ensembl 69_37n +1 known silent c.504 p.G168 0.298 pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB - no_errors UBA5 HGNC ENSG00000081307 68 0 0.00 55 10 15.38 - - - USP12 0 genome.wustl.edu 37 13 27664065 27664065 + Missense_Mutation SNP T T C TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 13 27664065 27664065 T C SNP USP12 ENST00000282344 human ensembl 69_37n -1 known missense c.689 p.K230R 1.000 pfam_Peptidase_C19,pfscan_Peptidase_C19 pfam_Peptidase_C19,pfscan_Peptidase_C19 - no_errors USP12 HGNC ENSG00000152484 17 0 0.00 21 8 27.59 - - - ZNF532 0 genome.wustl.edu 37 18 56587855 56587855 + Missense_Mutation SNP C C T TCGA-E9-A3X8-01A-31D-A22X-09 TCGA-E9-A3X8-10B-01D-A22X-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 66af5537-ae26-4931-826c-1a1e1366a61c 504c075a-6994-4a8e-8e61-503d82e241ea 18 56587855 56587855 C T SNP ZNF532 ENST00000336078 human ensembl 69_37n +1 known missense c.2336 p.T779M 0.998 pfscan_Znf_C2H2 smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF532 HGNC ENSG00000074657 43 0 0.00 36 5 12.20 - - -