Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ARNT 0 genome.wustl.edu 37 1 150786681 150786681 + Missense_Mutation SNP G G T TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 1 150786681 150786681 G T SNP ARNT ENST00000358595 human ensembl 69_37n -1 known missense c.1985 p.T662N 0.975 NULL pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_Nuc_translocat,tigrfam_PAS - no_errors ARNT HGNC ENSG00000143437 38 0 0.00 36 4 10.00 - - - ASTE1 0 genome.wustl.edu 37 3 130733046 130733047 + Frame_Shift_Ins INS - - T TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 3 130733046 130733047 - T INS ASTE1 ENST00000264992 human ensembl 69_37n -1 known frame_shift_ins c.1895_1894 p.R632fs 0.003:0.014 NULL pfam_XPG_DNA_repair_N - no_errors ASTE1 HGNC ENSG00000034533 53 0 0.00 27 5 15.62 - - - CARTPT 0 genome.wustl.edu 37 5 71015730 71015732 + In_Frame_Del DEL GAA GAA - TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 GAA GAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 5 71015730 71015732 GAA - DEL CARTPT ENST00000296777 human ensembl 69_37n +1 known in_frame_del c.183_185 p.K63in_frame_del 1.000:1.000:1.000 pfam_CART pfam_CART,superfamily_CART - no_errors CARTPT HGNC ENSG00000164326 44 0 0.00 24 6 20.00 - - - DLGAP5 0 genome.wustl.edu 37 14 55647930 55647930 + Splice_Site SNP C C A TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 14 55647930 55647930 C A SNP DLGAP5 ENST00000247191 human ensembl 69_37n -1 known splice_site c.580+1 e4+1 1.000 - - - no_errors DLGAP5 HGNC ENSG00000126787 216 0 0.00 97 50 34.01 - - - DOCK11 0 genome.wustl.edu 37 X 117722171 117722171 + Nonsense_Mutation SNP G G T TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d X 117722171 117722171 G T SNP DOCK11 ENST00000276202 human ensembl 69_37n +1 known nonsense c.1867 p.E623* 1.000 NULL pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology - no_errors DOCK11 HGNC ENSG00000147251 128 0 0.00 56 42 42.86 - - - FAM135B 0 genome.wustl.edu 37 8 139190894 139190894 + Missense_Mutation SNP T T C TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 8 139190894 139190894 T C SNP FAM135B ENST00000395297 human ensembl 69_37n -1 known missense c.913 p.K305E 0.998 NULL pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like - no_errors FAM135B HGNC ENSG00000147724 61 0 0.00 57 8 12.31 - - - FAM194A 0 genome.wustl.edu 37 3 150421569 150421569 + Silent SNP T T C TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 3 150421569 150421569 T C SNP FAM194A ENST00000295910 human ensembl 69_37n -1 known silent c.117 p.E39 0.000 NULL NULL - no_errors FAM194A HGNC ENSG00000163645 14 0 0.00 17 9 34.62 - - - GATA3 0 genome.wustl.edu 37 10 8115928 8115929 + Frame_Shift_Ins INS - - AT TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 10 8115928 8115929 - AT INS GATA3 ENST00000379328 human ensembl 69_37n +1 known frame_shift_ins c.1277_1278 p.S427fs 0.981:0.204 pirsf_TF_GATA-1/2/3 pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA - no_errors GATA3 HGNC ENSG00000107485 41 0 0.00 17 7 29.17 - - - GLB1 0 genome.wustl.edu 37 3 33110406 33110406 + Missense_Mutation SNP T T C TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 3 33110406 33110406 T C SNP GLB1 ENST00000445488 human ensembl 69_37n -1 known missense c.446 p.D149G 0.996 pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35 - no_errors GLB1 HGNC ENSG00000170266 47 0 0.00 32 7 17.95 - - - IL32 0 genome.wustl.edu 37 16 3119020 3119020 + Silent SNP A A G TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 16 3119020 3119020 A G SNP IL32 ENST00000396890 human ensembl 69_37n +1 known silent c.369 p.R123 0.000 NULL NULL - no_errors IL32 HGNC ENSG00000008517 18 0 0.00 7 4 36.36 - - - INCA1 0 genome.wustl.edu 37 17 4892728 4892728 + Silent SNP G G T TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 17 4892728 4892728 G T SNP INCA1 ENST00000396829 human ensembl 69_37n -1 known silent c.390 p.I130 0.993 NULL NULL - no_errors INCA1 HGNC ENSG00000196388 41 0 0.00 28 4 12.50 - - - KRTAP5-4 0 genome.wustl.edu 37 11 1642989 1642989 + Missense_Mutation SNP C C A TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 11 1642989 1642989 C A SNP KRTAP5-4 ENST00000399682 human ensembl 69_37n -1 known missense c.335 p.G112V 1.000 NULL NULL - no_errors KRTAP5-4 HGNC ENSG00000241598 39 0 0.00 43 11 20.37 - - - MUC5B 0 genome.wustl.edu 37 11 1261520 1261520 + Silent SNP C C A TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 11 1261520 1261520 C A SNP MUC5B ENST00000447027 human ensembl 69_37n +1 known silent c.3894 p.I1298 0.007 NULL pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C - no_errors MUC5B HGNC ENSG00000117983 16 0 0.00 10 6 37.50 - - - N4BP1 0 genome.wustl.edu 37 16 48596338 48596338 + Silent SNP G G T TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 16 48596338 48596338 G T SNP N4BP1 ENST00000262384 human ensembl 69_37n -1 known silent c.216 p.I72 1.000 NULL pfam_RNase_Zc3h12 - no_errors N4BP1 HGNC ENSG00000102921 35 0 0.00 26 4 13.33 - - - PIP5K1B 0 genome.wustl.edu 37 9 71509406 71509406 + Missense_Mutation SNP C C T TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 9 71509406 71509406 C T SNP PIP5K1B ENST00000478500 human ensembl 69_37n +1 known missense c.743 p.T248M 0.996 pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub - no_errors PIP5K1B HGNC ENSG00000107242 37 0 0.00 10 7 41.18 - - - SP3 0 genome.wustl.edu 37 2 174777831 174777831 + Missense_Mutation SNP C C A TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 2 174777831 174777831 C A SNP SP3 ENST00000310015 human ensembl 69_37n -1 known missense c.1996 p.D666Y 1.000 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,superfamily_Galactose-bd-like,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors SP3 HGNC ENSG00000172845 88 0 0.00 57 10 14.93 - - - TMEM251 0 genome.wustl.edu 37 14 93652791 93652791 + Silent SNP C C T TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 14 93652791 93652791 C T SNP TMEM251 ENST00000415050 human ensembl 69_37n +1 known silent c.285 p.H95 1.000 NULL NULL - no_errors TMEM251 HGNC ENSG00000153485 173 0 0.00 92 15 14.02 - - - VPS13D 0 genome.wustl.edu 37 1 12409220 12409220 + Splice_Site SNP G G A TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 1 12409220 12409220 G A SNP VPS13D ENST00000358136 human ensembl 69_37n +1 known splice_site c.9221-1 e45-1 1.000 - - - no_errors VPS13D HGNC ENSG00000048707 48 0 0.00 32 18 35.29 - - - ZC3H12A 0 genome.wustl.edu 37 1 37948869 37948869 + Missense_Mutation SNP C C G TCGA-E9-A245-01A-22D-A16D-09 TCGA-E9-A245-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bdd591f9-21d1-4ce5-bfde-30e7ac3d440a 5238df31-1273-4814-98cc-e8f1c180ee3d 1 37948869 37948869 C G SNP ZC3H12A ENST00000373082 human ensembl 69_37n +1 known missense c.1457 p.A486G 0.028 NULL pfam_RNase_Zc3h12 - no_errors ZC3H12A HGNC ENSG00000163874 15 0 0.00 7 7 50.00 - - -