Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ARL6IP6 0 genome.wustl.edu 37 2 153575506 153575508 + In_Frame_Del DEL TCC TCC - TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 TCC TCC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 2 153575506 153575508 TCC - DEL ARL6IP6 ENST00000326446 human ensembl 69_37n +1 known in_frame_del c.368_370 p.L125in_frame_del 0.946:0.969:0.994 NULL NULL - no_errors ARL6IP6 HGNC ENSG00000177917 100 0 0.00 79 37 31.62 - - - CASS4 0 genome.wustl.edu 37 20 55021046 55021046 + Missense_Mutation SNP G G A TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 20 55021046 55021046 G A SNP CASS4 ENST00000360314 human ensembl 69_37n +1 known missense c.550 p.V184M 0.000 NULL pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain - no_errors CASS4 HGNC ENSG00000087589 54 0 0.00 42 82 66.13 - - - CCP110 0 genome.wustl.edu 37 16 19556523 19556523 + Silent SNP C C G TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 16 19556523 19556523 C G SNP CCP110 ENST00000381396 human ensembl 69_37n +1 known silent c.2694 p.L898 1.000 NULL NULL - no_errors CCP110 HGNC ENSG00000103540 120 0 0.00 63 18 22.22 - - - CHD1 0 genome.wustl.edu 37 5 98240749 98240749 + Missense_Mutation SNP G G C TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 5 98240749 98240749 G C SNP CHD1 ENST00000284049 human ensembl 69_37n -1 known missense c.107 p.S36C 1.000 NULL pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow - no_errors CHD1 HGNC ENSG00000153922 74 0 0.00 52 28 35.00 - - - CYBASC3 0 genome.wustl.edu 37 11 61120579 61120579 + Missense_Mutation SNP G G C TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 11 61120579 61120579 G C SNP CYBASC3 ENST00000540755 human ensembl 69_37n -1 known missense c.217 p.L73V 1.000 NULL NULL - no_errors CYBASC3 HGNC ENSG00000162144 33 0 0.00 23 10 30.30 - - - FAM157B 0 genome.wustl.edu 37 9 141107536 141107537 + RNA INS - - GCA TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 9 141107536 141107537 - GCA INS FAM157B ENST00000446912 human ensembl 69_37n +1 known rna NULL NULL 0.033:0.036 - - - no_errors FAM157B HGNC ENSG00000233013 47 0 0.00 52 17 24.64 - - - FOXA3 0 genome.wustl.edu 37 19 46376175 46376175 + Silent SNP C C T TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 19 46376175 46376175 C T SNP FOXA3 ENST00000302177 human ensembl 69_37n +1 known silent c.912 p.F304 1.000 pfam_Forkhead_box_C pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head - no_errors FOXA3 HGNC ENSG00000170608 44 0 0.00 13 5 27.78 - - - FXR2 0 genome.wustl.edu 37 17 7496417 7496417 + Silent SNP C C T TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 17 7496417 7496417 C T SNP FXR2 ENST00000250113 human ensembl 69_37n -1 known silent c.1413 p.R471 0.981 pfam_Frag_X_MRP_fam pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1 - no_errors FXR2 HGNC ENSG00000129245 25 0 0.00 22 10 31.25 - - - GEMIN2 0 genome.wustl.edu 37 14 39584053 39584053 + Nonsense_Mutation SNP C C T TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 14 39584053 39584053 C T SNP GEMIN2 ENST00000527381 human ensembl 69_37n +1 novel nonsense c.157 p.Q53* 1.000 NULL NULL - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region GEMIN2 HGNC ENSG00000092208 160 0 0.00 114 52 31.33 - - - HEATR5B 0 genome.wustl.edu 37 2 37306265 37306265 + Silent SNP T T C TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 2 37306265 37306265 T C SNP HEATR5B ENST00000233099 human ensembl 69_37n -1 known silent c.336 p.K112 1.000 superfamily_ARM-type_fold superfamily_ARM-type_fold - no_errors HEATR5B HGNC ENSG00000008869 66 0 0.00 54 20 27.03 - - - HEPACAM 0 genome.wustl.edu 37 11 124794753 124794753 + Nonsense_Mutation SNP G G A TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 11 124794753 124794753 G A SNP HEPACAM ENST00000298251 human ensembl 69_37n -1 known nonsense c.298 p.R100* 0.950 pfam_Ig_V-set,smart_Ig_sub pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like - no_errors HEPACAM HGNC ENSG00000165478 64 0 0.00 21 11 33.33 - - - MMACHC 0 genome.wustl.edu 37 1 45974548 45974548 + Silent SNP G G A TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 1 45974548 45974548 G A SNP MMACHC ENST00000401061 human ensembl 69_37n +1 known silent c.510 p.E170 0.999 NULL NULL - no_errors MMACHC HGNC ENSG00000132763 86 0 0.00 60 20 25.00 - - - NUP98 0 genome.wustl.edu 37 11 3803284 3803284 + Missense_Mutation SNP T T C TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 11 3803284 3803284 T C SNP NUP98 ENST00000324932 human ensembl 69_37n -1 known missense c.64 p.T22A 1.000 NULL pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59 - no_errors NUP98 HGNC ENSG00000110713 109 0 0.00 57 24 29.63 - - - OSBPL6 0 genome.wustl.edu 37 2 179213982 179213982 + Missense_Mutation SNP G G A TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 2 179213982 179213982 G A SNP OSBPL6 ENST00000315022 human ensembl 69_37n +1 known missense c.1031 p.R344H 1.000 NULL pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology - no_errors OSBPL6 HGNC ENSG00000079156 145 0 0.00 108 32 22.86 - - - PIK3CA 0 genome.wustl.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A G TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 3 178952085 178952085 A G SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.3140 p.H1047R 1.000 superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 73 0 0.00 46 9 16.36 - - - PLK4 0 genome.wustl.edu 37 4 128804491 128804491 + Silent SNP G G A TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 4 128804491 128804491 G A SNP PLK4 ENST00000270861 human ensembl 69_37n +1 known silent c.201 p.L67 1.000 pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom - no_errors PLK4 HGNC ENSG00000142731 82 0 0.00 41 22 34.92 - - - PSTPIP2 0 genome.wustl.edu 37 18 43579418 43579418 + Missense_Mutation SNP G G A TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 18 43579418 43579418 G A SNP PSTPIP2 ENST00000409746 human ensembl 69_37n -1 known missense c.500 p.P167L 0.078 NULL pfam_FCH,smart_FCH,pfscan_FCH - no_errors PSTPIP2 HGNC ENSG00000152229 161 0 0.00 111 35 23.81 - - - RTN3 0 genome.wustl.edu 37 11 63525654 63525654 + Missense_Mutation SNP C C T TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 11 63525654 63525654 C T SNP RTN3 ENST00000377819 human ensembl 69_37n +1 known missense c.3080 p.A1027V 1.000 pfscan_Reticulon pfam_Reticulon,pfscan_Reticulon - no_errors RTN3 HGNC ENSG00000133318 70 0 0.00 51 11 17.74 - - - SARDH 0 genome.wustl.edu 37 9 136531950 136531950 + Silent SNP G G T TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 9 136531950 136531950 G T SNP SARDH ENST00000371872 human ensembl 69_37n -1 known silent c.2538 p.G846 0.876 pfam_GCV_T_C pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C - no_errors SARDH HGNC ENSG00000123453 46 0 0.00 29 11 27.50 - - - SPTA1 0 genome.wustl.edu 37 1 158583566 158583566 + Nonsense_Mutation SNP C C A TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 1 158583566 158583566 C A SNP SPTA1 ENST00000368148 human ensembl 69_37n -1 known nonsense c.6934 p.E2312* 1.000 NULL pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3 - no_errors SPTA1 HGNC ENSG00000163554 44 0 0.00 45 18 28.57 - - - TNP2 0 genome.wustl.edu 37 16 11362818 11362818 + Missense_Mutation SNP C C T TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 16 11362818 11362818 C T SNP TNP2 ENST00000312693 human ensembl 69_37n -1 known missense c.302 p.R101H 0.036 pfam_TP2 pfam_TP2 - no_errors TNP2 HGNC ENSG00000178279 208 0 0.00 149 64 30.05 - - - TRPV2 0 genome.wustl.edu 37 17 16335490 16335492 + In_Frame_Del DEL TGC TGC - TCGA-E9-A229-01A-31D-A17G-09 TCGA-E9-A229-10B-01D-A159-09 TGC TGC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx a27fa57d-d1ad-4534-a933-0fdcc5f06a8c 32df7bac-7bb4-4538-800f-893a1ab3d28c 17 16335490 16335492 TGC - DEL TRPV2 ENST00000338560 human ensembl 69_37n +1 known in_frame_del c.1865_1867 p.L626in_frame_del 1.000:1.000:1.000 tigrfam_TRP_channel pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel - no_errors TRPV2 HGNC ENSG00000187688 45 0 0.00 23 3 11.54 - - -