Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All AATK-AS1 0 genome.wustl.edu 37 17 79152856 79152856 + RNA SNP G G A TCGA-E9-A227-01A-11D-A159-09 TCGA-E9-A227-10A-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 15eb25c4-f4a7-446e-b654-ae39ccd2cf00 1f80b7f1-4b76-4815-9cc7-05318f7fa529 17 79152856 79152856 G A SNP AATK-AS1 ENST00000414089 human ensembl 69_37n +1 known rna NULL NULL 0.000 - - - no_errors AATK-AS1 HGNC ENSG00000225180 23 0 0.00 39 8 17.02 - - - ATP10A 0 genome.wustl.edu 37 15 25966903 25966903 + Missense_Mutation SNP G G C TCGA-E9-A227-01A-11D-A159-09 TCGA-E9-A227-10A-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 15eb25c4-f4a7-446e-b654-ae39ccd2cf00 1f80b7f1-4b76-4815-9cc7-05318f7fa529 15 25966903 25966903 G C SNP ATP10A ENST00000356865 human ensembl 69_37n -1 known missense c.1264 p.Q422E 1.000 superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr - no_errors ATP10A HGNC ENSG00000206190 40 0 0.00 72 23 23.96 - - - CHST2 0 genome.wustl.edu 37 3 142840438 142840438 + Silent SNP G G A TCGA-E9-A227-01A-11D-A159-09 TCGA-E9-A227-10A-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 15eb25c4-f4a7-446e-b654-ae39ccd2cf00 1f80b7f1-4b76-4815-9cc7-05318f7fa529 3 142840438 142840438 G A SNP CHST2 ENST00000309575 human ensembl 69_37n +1 known silent c.780 p.S260 0.092 pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase - no_errors CHST2 HGNC ENSG00000175040 9 0 0.00 8 4 33.33 - - - CLIC3 0 genome.wustl.edu 37 9 139889217 139889217 + Silent SNP C C T TCGA-E9-A227-01A-11D-A159-09 TCGA-E9-A227-10A-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 15eb25c4-f4a7-446e-b654-ae39ccd2cf00 1f80b7f1-4b76-4815-9cc7-05318f7fa529 9 139889217 139889217 C T SNP CLIC3 ENST00000494426 human ensembl 69_37n -1 known silent c.627 p.A209 0.033 superfamily_Glutathione-S-Trfase_C-like superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel - no_errors CLIC3 HGNC ENSG00000169583 16 0 0.00 21 11 34.38 - - - CRIPAK 0 genome.wustl.edu 37 4 1388806 1388807 + Frame_Shift_Ins INS - - CA TCGA-E9-A227-01A-11D-A159-09 TCGA-E9-A227-10A-01D-A159-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 15eb25c4-f4a7-446e-b654-ae39ccd2cf00 1f80b7f1-4b76-4815-9cc7-05318f7fa529 4 1388806 1388807 - CA INS CRIPAK ENST00000324803 human ensembl 69_37n +1 known frame_shift_ins c.507_508 p.C171fs 0.000:0.001 smart_Post-SET_dom smart_Post-SET_dom - no_errors CRIPAK HGNC ENSG00000179979 22 0 0.00 20 4 16.67 - - - CTCF 0 genome.wustl.edu 37 16 67645934 67645934 + Missense_Mutation SNP C C G TCGA-E9-A227-01A-11D-A159-09 TCGA-E9-A227-10A-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 15eb25c4-f4a7-446e-b654-ae39ccd2cf00 1f80b7f1-4b76-4815-9cc7-05318f7fa529 16 67645934 67645934 C G SNP CTCF ENST00000264010 human ensembl 69_37n +1 known missense c.862 p.H288D 1.000 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors CTCF HGNC ENSG00000102974 27 0 0.00 43 32 42.67 - - - DNAH2 0 genome.wustl.edu 37 17 7708590 7708590 + Missense_Mutation SNP G G C TCGA-E9-A227-01A-11D-A159-09 TCGA-E9-A227-10A-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 15eb25c4-f4a7-446e-b654-ae39ccd2cf00 1f80b7f1-4b76-4815-9cc7-05318f7fa529 17 7708590 7708590 G C SNP DNAH2 ENST00000389173 human ensembl 69_37n +1 known missense c.9321 p.K3107N 1.000 NULL pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase - no_errors DNAH2 HGNC ENSG00000183914 35 0 0.00 77 24 23.76 - - - GPR98 0 genome.wustl.edu 37 5 89948176 89948176 + Nonsense_Mutation SNP C C T TCGA-E9-A227-01A-11D-A159-09 TCGA-E9-A227-10A-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 15eb25c4-f4a7-446e-b654-ae39ccd2cf00 1f80b7f1-4b76-4815-9cc7-05318f7fa529 5 89948176 89948176 C T SNP GPR98 ENST00000405460 human ensembl 69_37n +1 known nonsense c.3430 p.R1144* 0.999 NULL pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like - no_errors GPR98 HGNC ENSG00000164199 59 0 0.00 125 45 26.47 - - - HERC1 0 genome.wustl.edu 37 15 64005094 64005094 + Frame_Shift_Del DEL C C - TCGA-E9-A227-01A-11D-A159-09 TCGA-E9-A227-10A-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 15eb25c4-f4a7-446e-b654-ae39ccd2cf00 1f80b7f1-4b76-4815-9cc7-05318f7fa529 15 64005094 64005094 C - DEL HERC1 ENST00000443617 human ensembl 69_37n -1 known frame_shift_del c.4464 p.S1489fs 1.000 NULL pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens - no_errors HERC1 HGNC ENSG00000103657 30 0 0.00 61 21 25.30 - - - MAGEC3 0 genome.wustl.edu 37 X 140983249 140983249 + Silent SNP G G A TCGA-E9-A227-01A-11D-A159-09 TCGA-E9-A227-10A-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 15eb25c4-f4a7-446e-b654-ae39ccd2cf00 1f80b7f1-4b76-4815-9cc7-05318f7fa529 X 140983249 140983249 G A SNP MAGEC3 ENST00000448920 human ensembl 69_37n +1 known silent c.360 p.P120 0.000 NULL NULL - no_errors MAGEC3 HGNC ENSG00000165509 21 0 0.00 31 20 39.22 - - - MARCH10 0 genome.wustl.edu 37 17 60865932 60865932 + Missense_Mutation SNP C C T TCGA-E9-A227-01A-11D-A159-09 TCGA-E9-A227-10A-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 15eb25c4-f4a7-446e-b654-ae39ccd2cf00 1f80b7f1-4b76-4815-9cc7-05318f7fa529 17 60865932 60865932 C T SNP MARCH10 ENST00000311269 human ensembl 69_37n -1 known missense c.119 p.R40K 0.539 NULL pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH - no_errors MARCH10 HGNC ENSG00000173838 55 0 0.00 104 41 28.28 - - - MED19 0 genome.wustl.edu 37 11 57472466 57472467 + Frame_Shift_Ins INS - - C TCGA-E9-A227-01A-11D-A159-09 TCGA-E9-A227-10A-01D-A159-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 15eb25c4-f4a7-446e-b654-ae39ccd2cf00 1f80b7f1-4b76-4815-9cc7-05318f7fa529 11 57472466 57472467 - C INS MED19 ENST00000431606 human ensembl 69_37n -1 known frame_shift_ins c.453_452 p.F152fs 0.999:1.000 pfam_Mediator_Med19_met pfam_Mediator_Med19_met,pfam_DNA-dir_RNA_pol1_su_RPA34 - no_errors MED19 HGNC ENSG00000156603 17 0 0.00 48 19 28.36 - - - NOTCH2 0 genome.wustl.edu 37 1 120458435 120458436 + Frame_Shift_Ins INS - - G TCGA-E9-A227-01A-11D-A159-09 TCGA-E9-A227-10A-01D-A159-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 15eb25c4-f4a7-446e-b654-ae39ccd2cf00 1f80b7f1-4b76-4815-9cc7-05318f7fa529 1 120458435 120458436 - G INS NOTCH2 ENST00000256646 human ensembl 69_37n -1 known frame_shift_ins c.6910_6909 p.I2303fs 0.997:0.957 pirsf_Notch,prints_Notch_2 pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom - no_errors NOTCH2 HGNC ENSG00000134250 13 0 0.00 32 11 25.58 - - - PIK3CA 0 genome.wustl.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A G TCGA-E9-A227-01A-11D-A159-09 TCGA-E9-A227-10A-01D-A159-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 15eb25c4-f4a7-446e-b654-ae39ccd2cf00 1f80b7f1-4b76-4815-9cc7-05318f7fa529 3 178952085 178952085 A G SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.3140 p.H1047R 1.000 superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 26 0 0.00 57 26 31.33 - - - PRR14 0 genome.wustl.edu 37 16 30667597 30667597 + Missense_Mutation SNP G G A TCGA-E9-A227-01A-11D-A159-09 TCGA-E9-A227-10A-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 15eb25c4-f4a7-446e-b654-ae39ccd2cf00 1f80b7f1-4b76-4815-9cc7-05318f7fa529 16 30667597 30667597 G A SNP PRR14 ENST00000300835 human ensembl 69_37n +1 known missense c.1723 p.E575K 0.991 NULL NULL - no_errors PRR14 HGNC ENSG00000156858 12 0 0.00 22 7 24.14 - - - TBC1D4 0 genome.wustl.edu 37 13 75884201 75884201 + Missense_Mutation SNP C C T TCGA-E9-A227-01A-11D-A159-09 TCGA-E9-A227-10A-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 15eb25c4-f4a7-446e-b654-ae39ccd2cf00 1f80b7f1-4b76-4815-9cc7-05318f7fa529 13 75884201 75884201 C T SNP TBC1D4 ENST00000377636 human ensembl 69_37n -1 known missense c.2470 p.E824K 0.832 pfam_DUF3350 pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom - no_errors TBC1D4 HGNC ENSG00000136111 54 0 0.00 119 40 25.16 - - -